Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: WGCNA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/WGCNA

Weighted Correlation Network Analysis
52 versions
Latest release: almost 2 years ago
20 dependent packages
9,120 downloads last month

Papers Mentioning WGCNA 3,479

10.1111/acel.13349
Epigenetic clock and methylation study of oocytes from a bovine model of reproductive aging
Cited by: 19
Author(s): Paweł Kordowitzki, Amin Haghani, Joseph A. Zoller, Caesar Z. Li, Ken Raj, Matthew L Spangler, Steve Horvath
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-15-730
Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides
Cited by: 18
Author(s): Lourdes Peña‐Castillo, Ryan G. Mercer, Anastasia Gurinovich, Stephen Callister, Aaron Wright, Alexander B. Westbye, J. Thomas Beatty, Andrew S. Lang
Software Mentions: 1
Published: almost 11 years ago
10.1038/s41598-019-50507-3
Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways
Cited by: 18
Author(s): Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 1
Published: about 5 years ago
10.1186/s12864-020-07352-w
Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chloride
Cited by: 8
Author(s): Rongfa Chen, Yanting Fan, Huiwen Zhou, Shanping Mo, Zhongfeng Zhou, Haifeng Yan, Ting Luo, Xing Huang, Mengling Weng, Prakash Lakshmanan, Yang‐Rui Li, Lihang Qiu, Jianming Wu
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-15-33
Sex differences in the human peripheral blood transcriptome
Cited by: 124
Author(s): Ritsert C. Jansen, Sandra Batista, Andrew I. Brooks, Jay A. Tischfield, Gonneke Willemsen, Gerard van Grootheest, Jouke Jan Hottenga, Yuri Milaneschi, Hamdi Mbarek, Vered Madar, Wouter J. Peyrot, Jacqueline M. Vink, C. L. Verweij, Eco J. C. de Geus, Johannes H. Smit, Fred A. Wright, Patrick F. Sullivan, Dorret I. Boomsma, Brenda W. J. H. Penninx
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12864-021-07839-0
Trehalose in pine wood nematode participates in DJ3 formation and confers resistance to low-temperature stress
Cited by: 5
Author(s): Qiaoli Chen, Ruizhi Zhang, Danlei Li, Feng Wang, Shengwei Jiang, Jianan Wang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-5549-9
A modular analysis of microglia gene expression, insights into the aged phenotype
Cited by: 22
Author(s): Christine E. Cho, Sagar S. Damle, Edward V. Wancewicz, Swagatam Mukhopadhyay, Christopher E. Hart, Curt Mazur, Eric E. Swayze, Fredrik Kamme
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-015-1535-z
Poplar trees reconfigure the transcriptome and metabolome in response to drought in a genotype- and time-of-day-dependent manner
Cited by: 52
Author(s): Erin T. Hamanishi, Genoa L H Barchet, Rébecca Dauwe, Shawn D. Mansfield, Malcolm M. Campbell
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-021-07585-3
Aging features of the migratory locust at physiological and transcriptional levels
Cited by: 5
Author(s): Siyuan Guo, Pengcheng Yang, Bo Liang, Feng Zhou, Hou Li, Le Kang, Xianhui Wang
Software Mentions: 1
Published: over 3 years ago
10.1111/acel.12788
Synergistic effects of TGFβ2, WNT9a, and FGFR4 signals attenuate satellite cell differentiation during skeletal muscle development
Cited by: 19
Author(s): Weiya Zhang, Yongming Xu, Lu Zhang, Sheng Wang, Binxu Yin, Zhao Song, Xinyun Li
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-10127-1
Analysis of temporal expression profiles after sciatic nerve injury by bioinformatic method
Cited by: 4
Author(s): Yichong Zhang, Yuanbo Zhan, Ning Han, Yuhui Kou, Xiaofeng Yin, Peixun Zhang
Software Mentions: 1
Published: about 7 years ago
10.1186/s12864-019-5708-z
Developmental transcriptomics of Chinese cordyceps reveals gene regulatory network and expression profiles of sexual development-related genes
Cited by: 19
Author(s): Xiao Li, Fen Wang, Qing Liu, Quanping Li, Zhengming Qian, Xiaoling Zhang, Kuan Li, Wenjia Li, Caihong Dong
Software Mentions: 1
Published: over 5 years ago
10.18632/aging.102816
Cancer stem cell-specific expression profiles reveal emerging bladder cancer biomarkers and identify circRNA_103809 as an important regulator in bladder cancer
Cited by: 19
Author(s): Tao Tao, Simin Yuan, Jinjian Liu, Da Shi, Mian Peng, Chong Li, Song Wu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-020-07193-7
Temporal transcriptomic differences between tolerant and susceptible genotypes contribute to rice drought tolerance
Cited by: 8
Author(s): Hui Xia, Xiaoyan Ma, Kai Xu, Lei Wang, Hongyan Liu, Liang Chen, Lijun Luo
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2021.647253
Integrative Analysis of Methylation and Copy Number Variations of Prostate Adenocarcinoma Based on Weighted Gene Co-expression Network Analysis
Cited by: 6
Author(s): Yaxin Hou, Junyi Hu, Lijie Zhou, Lilong Liu, Ke Chen, Xiong Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.641851
Identification of Key Functional Gene Signatures Indicative of Dedifferentiation in Papillary Thyroid Cancer
Cited by: 2
Author(s): Weihua Xu, Cuiwei Li, Ben Ma, Zhongxin Lu, Yuchen Wang, Hongyi Jiang, Yi Luo, Yichen Yang, Xiao Wang, Tian Liao, Qinghai Ji, Yu Wang, Wenjun Wei
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2019.01101
Bladder Cancer Exhibiting High Immune Infiltration Shows the Lowest Response Rate to Immune Checkpoint Inhibitors
Cited by: 31
Author(s): Shen Pan, Yunhong Zhan, Xiaonan Chen, Bin Wu, Bitian Liu
Software Mentions: 1
Published: about 5 years ago
10.3389/fonc.2021.604315
Identification of Hub Genes Associated With Sensitivity of 5-Fluorouracil Based Chemotherapy for Colorectal Cancer by Integrated Bioinformatics Analysis
Cited by: 3
Author(s): Ya Wang, Qunhui Wei, Yuqiao Chen, Shichao Long, Yuanbing Yao, Kai Fu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-016-3176-2
Large-scale gene co-expression network as a source of functional annotation for cattle genes
Cited by: 16
Author(s): Hamid Beiki, A. Nejati‐Javaremi, A. Pakdel, Ali Masoudi‐Nejad, Zhi-Liang Hu, James M. Reecy
Software Mentions: 1
Published: about 8 years ago
10.1186/s40478-020-01109-y
Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain
Cited by: 16
Author(s): Joanna J. Bury, Annabelle Chambers, Paul R. Heath, Paul G. Ince, Pamela J. Shaw, Fiona E. Matthews, Carol Brayne, Julie E. Simpson, Stephen B. Wharton
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2021.670490
Potential Impact of ALKBH5 and YTHDF1 on Tumor Immunity in Colon Adenocarcinoma
Cited by: 18
Author(s): Guanyu Yan, Yi An, Boyang Xu, Ningning Wang, Xiaodi Sun, Mingjun Sun
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-12-S3-S3
Liverome: a curated database of liver cancer-related gene signatures with self-contained context information
Cited by: 40
Author(s): Langho Lee, Kai Wang, Gang Li, Zhi Xie, Yuli Wang, Jiangchun Xu, Shaoxian Sun, David Pocalyko, Jong Bhak, Chulhong Kim, Kee-Ho Lee, Ye Jin Jang, Young Il Yeom, Hyang Sook Yoo, Seungwoo Hwang
Software Mentions: 1
Published: almost 13 years ago
10.1038/s41598-017-14120-6
Early-onset and classical forms of type 2 diabetes show impaired expression of genes involved in muscle branched-chain amino acids metabolism
Cited by: 45
Author(s): María Isabel Hernández‐Álvarez, Ángels Díaz-Ramos, María Berdasco, Jeff E. Cobb, Evarist Planet, Diane Cooper, Agnieszka Pazderska, Krzystof Wanic, Declan O’Hanlon, Antonio Gómez, Laura Rodríguez de la Ballina, Manel Esteller, Manuel Palacı́n, Donal J. O'Gorman, John J. Nolan, António Zorzano
Software Mentions: 1
Published: about 7 years ago
10.3389/fonc.2021.609334
M2 Macrophage Co-Expression Factors Correlate With Immune Phenotype and Predict Prognosis of Bladder Cancer
Cited by: 10
Author(s): Yutao Wang, Kexin Yan, Jianfeng Wang, Jiaxing Lin, Jianbin Bi
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2020.01648
Aberrant Chloride Intracellular Channel 4 Expression Is Associated With Adverse Outcome in Cytogenetically Normal Acute Myeloid Leukemia
Cited by: 4
Author(s): Sai Huang, Zhi Huang, Ping Chen, Cong Feng
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2020.592413
Ubiquitin-Like Modifier Activating Enzyme 1 as a Novel Diagnostic and Prognostic Indicator That Correlates With Ferroptosis and the Malignant Phenotypes of Liver Cancer Cells
Cited by: 29
Author(s): Yiru Shan, Guang Yang, Haixia Huang, Yehan Zhou, Xiangyu Hu, Qiuhong Lu, Peng Guo, Jun Hou, Li Cao, Fuhua Tian, Qi Pan
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2021.679851
CD86 Molecule Might Be a Novel Immune-Related Prognostic Biomarker for Patients With Bladder Cancer by Bioinformatics and Experimental Assays
Cited by: 4
Author(s): Xin Yan, Guo-Wei Du, Zhao Chun-hua, Tong-Zu Liu, Sheng Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.603634
A Prognostic Signature Based on Immunogenomic Profiling Offers Guidance for Esophageal Squamous Cell Cancer Treatment
Cited by: 8
Author(s): Jianyao Gao, Ting Tang, Baohui Zhang, Guang Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2020.573534
Upregulated Collagen COL10A1 Remodels the Extracellular Matrix and Promotes Malignant Progression in Lung Adenocarcinoma
Cited by: 27
Author(s): Yantao Liang, Wenjie Xia, Te Zhang, Bing Chen, Hui Wang, Xinzhang Song, Zeyu Zhang, Lin Xu, Gaochao Dong, Feng Jiang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2021.591507
Identification of Ten Core Hub Genes as Potential Biomarkers and Treatment Target for Hepatoblastoma
Cited by: 8
Author(s): Rui Sun, Simin Li, Ke Zhao, Mei Diao, Long Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.682998
Radiogenomic Analysis of Papillary Thyroid Carcinoma for Prediction of Cervical Lymph Node Metastasis: A Preliminary Study
Cited by: 12
Author(s): Yuyang Tong, Peixuan Sun, Juanjuan Yong, Hongbo Zhang, Yao Qi Huang, Yi Guo, Jinhua Yu, Shichong Zhou, Yulong Wang, Qinghai Ji, Yuanyuan Wang, Cai Chang
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2019.01465
Prognostic Heterogeneity of MRE11 Based on the Location of Primary Colorectal Cancer Is Caused by Activation of Different Immune Signals
Cited by: 7
Author(s): Cheng Fan, Maria Kopsida, You-Bin Liu, Hong Zhang, Jingfang Gao, Gunnar Arbman, Siyuwei Cao, Yuan Li, Zong‐Guang Zhou, Xiao‐Feng Sun
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2021.693034
The Key Gene Expression Patterns and Prognostic Factors in Malignant Transformation from Enchondroma to Chondrosarcoma
Cited by: 5
Author(s): Jinliang Wu, Yanfang Huang, Chengxuan Yu, Xia Li, Limengmeng Wang, Jundong Hong, Daochao Lin, Xiaoping Han, Guoji Guo, Tianye Hu, He Huang
Software Mentions: 1
Published: about 3 years ago
10.1186/s12864-018-5104-0
Integration of small RNAs and transcriptome sequencing uncovers a complex regulatory network during vernalization and heading stages of orchardgrass (Dactylis glomerata L.)
Cited by: 13
Author(s): Guangyan Feng, Lei Xu, Jianping Wang, Gang Nie, B. Shaun Bushman, Wengang Xie, Haidong Yan, Zhongfu Yang, Hao Guan, Linkai Huang, Xinquan Zhang
Software Mentions: 1
Published: about 6 years ago
10.3389/fonc.2021.681280
N6-Methyladenosine RNA Demethylase FTO Promotes Gastric Cancer Metastasis by Down-Regulating the m6A Methylation of ITGB1
Cited by: 22
Author(s): Duo Wang, Xiujuan Qu, Wenqing Lü, Yizhe Wang, Yue Jin, Kezuo Hou, Bowen Yang, Ce Li, Jianfei Qi, Jiawen Xiao, Xiaofang Che, Yunpeng Liu
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2021.688545
The Identification of Stemness-Related Genes in the Risk of Head and Neck Squamous Cell Carcinoma
Cited by: 2
Author(s): Guanying Feng, Feifei Xue, Yingzheng He, Tianxiao Wang, Hua Yuan
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2016.01155
Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds
Cited by: 33
Author(s): Haifeng Geng, Mary Bao Tran-Gyamfi, Todd W. Lane, Kenneth L. Sale, Eizadora T. Yu
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2019.00352
Alterations of the Mice Gut Microbiome via Schistosoma japonicum Ova-Induced Granuloma
Cited by: 29
Author(s): Yanqing Zhao, Shuxu Yang, Bei Li, Wei Li, Jue Wang, Zongyun Chen, Jing Yang, Huabing Tan, Jian Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-020-07250-1
Deficiencies in the formation and regulation of anther cuticle and tryphine contribute to male sterility in cotton PGMS line
Cited by: 5
Author(s): Meng Zhang, Ji Liu, Qiang Ma, Yuan Qin, Hantao Wang, Pengyun Chen, Liang Ma, Xiaokang Fu, Longfu Zhu, Hengling Wei, Shuang Yu
Software Mentions: 1
Published: about 4 years ago
10.3389/fonc.2020.00638
Identification Hub Genes in Colorectal Cancer by Integrating Weighted Gene Co-Expression Network Analysis and Clinical Validation in vivo and vitro
Cited by: 31
Author(s): Yihang Yuan, Ji Chen, Jue Wang, Ming Xu, Yunpeng Zhang, Peng Sun, Leilei Liang
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2015.00487
Identification of a transporter Slr0982 involved in ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803
Cited by: 25
Author(s): Yanan Zhang, Xiangfeng Niu, Mengliang Shi, Guangsheng Pei, Xiaoqing Zhang, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 9 years ago
10.3389/fonc.2018.00450
Emerging Biomarkers in Bladder Cancer Identified by Network Analysis of Transcriptomic Data
Cited by: 44
Author(s): Matteo Giulietti, Giulia Occhipinti, Alessandra Righetti, Massimo Bracci, Alessandro Conti, Annamaria Ruzzo, Elisabetta Cerigioni, Tiziana Cacciamani, Giovanni Principato, Francesco Piva
Software Mentions: 1
Published: about 6 years ago
10.3389/fmed.2020.584747
Integrating Tumor Stroma Biomarkers With Clinical Indicators for Colon Cancer Survival Stratification
Cited by: 4
Author(s): Yong Chen, Wenlong Wang, Bo Jiang, Lei Yao, Fada Xia, Xinying Li
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-019-5424-8
Transcriptional regulatory networks controlling taste and aroma quality of apricot (Prunus armeniaca L.) fruit during ripening
Cited by: 36
Author(s): Qiuyun Zhang, Chao Feng, Wenhui Li, Zehui Qu, Ming Zeng, Wanpeng Xi
Software Mentions: 1
Published: almost 6 years ago
10.3389/fimmu.2020.592084
Therapeutic Potential of Triptolide as an Anti-Inflammatory Agent in Dextran Sulfate Sodium-Induced Murine Experimental Colitis
Cited by: 31
Author(s): Bufu Tang, Jinyu Zhu, Baohui Zhang, Fazong Wu, Yajie Wang, Qiaoyou Weng, Shiji Fang, Zheng Lu, Yang Yang, Rongfang Qiu, Minjiang Chen, Min Xu, Zhongwei Zhao, Jiansong Ji
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2020.01070
Human Monocyte Subset Distinctions and Function: Insights From Gene Expression Analysis
Cited by: 48
Author(s): Sarah Cormican, Matthew D. Griffin
Software Mentions: 1
Published: over 4 years ago
10.18632/aging.103054
A novel immune-related genes prognosis biomarker for melanoma: associated with tumor microenvironment
Cited by: 73
Author(s): Rongzhi Huang, Min Mao, Yong Lu, Qingliang Yu, Liang Liao
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2020.603337
Identifying Potential Candidate Hub Genes and Functionally Enriched Pathways in the Immune Responses to Quadrivalent Inactivated Influenza Vaccines in the Elderly Through Co-Expression Network Analysis
Cited by: 1
Author(s): Jing Yang, Jiayou Zhang, Renfeng Fan, Wei Zhao, Han Tian, Kai Duan, Xinguo Li, Peiyu Zeng, Jinglong Deng, Jikai Zhang, Xiaoming Yang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2020.01281
Identification of Immune-Related Genes Contributing to the Development of Glioblastoma Using Weighted Gene Co-expression Network Analysis
Cited by: 30
Author(s): Yahui Kong, Zichao Feng, Yulin Zhang, Xiaofei Liu, Yuan Ma, Zhimin Zhao, Bin Huang, An-Jing Chen, Di Zhang, Frits Thorsen, Jian Wang, Ning Yang, Xingang Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2021.730300
Integration of Molecular Inflammatory Interactome Analyses Reveals Dynamics of Circulating Cytokines and Extracellular Vesicle Long Non-Coding RNAs and mRNAs in Heroin Addicts During Acute and Protracted Withdrawal
Cited by: 7
Author(s): Zunyue Zhang, Hongjin Wu, Qingyan Peng, Zhenrong Xie, Fengrong Chen, Yuru Ma, Yizhi Zhang, Yong Zhou, Jun Yang, Cheng Chen, Shaoyou Li, Yongjin Zhang, Wen Tian, Yuan Wang, Yu Xu, Huayou Luo, Mei Zhu, Yi‐Qun Kuang, Juehua Yu, Kunhua Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2020.00616
A Signaling Pathway to Mediate the Combined Immunomodulation of Acetylcholine and Enkephalin in Oyster Crassostrea gigas
Cited by: 3
Author(s): Zhaoqun Liu, Zhi Zhou, Lingling Wang, Yukun Zhang, Yanan Zong, Yan Zheng, Meijia Li, Weilin Wang, Linsheng Song
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2020.01194
Expression of S100A Alarmins in Cord Blood Monocytes Is Highly Associated With Chorioamnionitis and Fetal Inflammation in Preterm Infants
Cited by: 12
Author(s): Veronika Golubinskaya, Henri Puttonen, Ing‐Marie Fyhr, Halfdan Rydbeck, Ann Hellström, Bo Jacobsson, Holger Nilsson, Carina Mallard, Karin Sävman
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-019-5773-3
A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryos
Cited by: 11
Author(s): Michelle M. Bertke, Kyle M. Dubiak, Laura Cronin, Erliang Zeng, Paul W. Huber
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2021.739514
Circulating Metabolomic Signature in Generalized Pustular Psoriasis Blunts Monocyte Hyperinflammation by Triggering Amino Acid Response
Cited by: 7
Author(s): Na Yu, Peng Chen, Wenjuan Chen, Zengqi Sun, Jianfeng Zheng, Shujie Zhang, Yangfeng Ding, Yujun Shi
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2019.00402
Transcriptional Analysis of the Human IgE-Expressing Plasma Cell Differentiation Pathway
Cited by: 10
Author(s): Faruk Ramadani, H. J. M. Bowen, Hannah Gould, David Fear
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2019.01459
A Combined Transcriptomic and Genomic Analysis Identifies a Gene Signature Associated With the Response to Anti-TNF Therapy in Rheumatoid Arthritis
Cited by: 22
Author(s): Adrià Aterido, Juan D. Cañete, Jesús Tornero, Francisco J. Blanco, Benjamín Fernández‐Gutiérrez, Carolina Pérez, Mercedes Alperi-López, A Olivé, Hèctor Corominas, Víctor M. Martínez‐Taboada, Inmaculada Fernández González, Antonio Fernández‐Nebro, Alba Erra, María López-Lasanta, Mireia López-Corbeto, Núria Palau, Sara Marsal, Antonio Julià
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2020.01795
Multiple Processes May Involve in the IgG4-RD Pathogenesis: An Integrative Study via Proteomic and Transcriptomic Analysis
Cited by: 8
Author(s): Shaozhe Cai, Yu Chen, Shaochong Lin, Cong Ye, Fang Zheng, Lingli Dong
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-016-3201-5
Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
Cited by: 14
Author(s): Taylor P. Frazier, Nathan A. Palmer, Fuliang Xie, Christian M. Tobias, Teresa Donze-Reiner, Aureliano Bombarely, Kevin L. Childs, Shengqiang Shu, Jerry Jenkins, Jeremy Schmutz, Baohong Zhang, Gautam Sarath, Bingyu Zhao
Software Mentions: 1
Published: about 8 years ago
10.3389/fimmu.2021.702733
Transcriptome Analysis of CCR9+ T Helper Cells From Primary Sjögren’s Syndrome Patients Identifies CCL5 as a Novel Effector Molecule
Cited by: 8
Author(s): Anneline C. Hinrichs, Sofie L M Blokland, Ana P Lopes, Catharina G K Wichers, Aike A. Kruize, Aridaman Pandit, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.624614
Predicted Disease-Specific Immune Infiltration Patterns Decode the Potential Mechanisms of Long Non-Coding RNAs in Primary Sjogren’s Syndrome
Cited by: 6
Author(s): Caiqi Cheng, Jun Zhou, Ruiying Chen, Yo Shibata, Ryouichi Tanaka, Jun Wang, Jiaming Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.659193
SDF4 Is a Prognostic Factor for 28-Days Mortality in Patients With Sepsis via Negatively Regulating ER Stress
Cited by: 10
Author(s): Tingting Zhu, Qun Su, Cuili Wang, Lingling Shen, Hongjun Chen, Shi Feng, Xing Peng, Siyu Chen, Yucheng Wang, Hong Jiang, Jianghua Chen
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00857
Identification of Gene Signatures for Diagnosis and Prognosis of Hepatocellular Carcinomas Patients at Early Stage
Cited by: 14
Author(s): Xiaoning Gan, Yue Luo, Guanqi Dai, Junhao Lin, Xinhui Liu, Zhang Xiang-qun, Aimin Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.00981
Identification of KIAA0513 and Other Hub Genes Associated With Alzheimer Disease Using Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Min Zhu, Longfei Jia, Fangyu Li, Jianping Jia
Software Mentions: 1
Published: about 4 years ago
10.18632/aging.202285
Identification of key modules and genes associated with breast cancer prognosis using WGCNA and ceRNA network analysis
Cited by: 44
Author(s): Xin Yin, Pei Wang, Tianshu Yang, Gen Li, Xu Teng, Wei Huang, Hefen Yu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2018.00102
Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Cheng Zou, Li Long, Xiangdong Cheng, Cencen Li, Yuhua Fu, Fang Cui, Changchun Li
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-18287-w
Integrated transcriptional analysis unveils the dynamics of cellular differentiation in the developing mouse hippocampus
Cited by: 6
Author(s): Giovanni Iacono, Marco Benevento, Aline Dubos, Yann Hérault, Hans van Bokhoven, Nael Nadif Kasri, Hendrik G. Stunnenberg
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2164-11-589
Is human blood a good surrogate for brain tissue in transcriptional studies?
Cited by: 101
Author(s): Chaochao Cai, Peter Langfelder, Tova Fuller, Michael C. Oldham, Rui Luo, Leonard H van den Berg, Roel A. Ophoff, Steve Horvath
Software Mentions: 1
Published: about 14 years ago
10.3389/fgene.2020.00378
Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
Cited by: 4
Author(s): Jiongliang Wang, Xuelian Ma, Jiaotong Yang, Yanan Hui, Jiajie She, Tian Tian, Zhongqiu Li, Wenying Xu, Zhimin Gao, Zhen Su, Hansheng Zhao
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.00342
Identification of Crucial Genes Associated With Immune Cell Infiltration in Hepatocellular Carcinoma by Weighted Gene Co-expression Network Analysis
Cited by: 42
Author(s): Dengchuan Wang, Jun Li, Shengshuo Liu, Wenli Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fphar.2021.725341
An Integrated Metabolomic Study of Osteoporosis: Discovery and Quantification of Hyocholic Acids as Candidate Markers
Cited by: 13
Author(s): Dawei Deng, Pan Chen, Zeming Wu, Yanan Sun, Chang Liu, Hong Xiang, Peiyuan Yin, Dong Shang
Software Mentions: 1
Published: over 3 years ago
10.3389/fphar.2020.01112
Construction and Analysis of the Tumor-Specific mRNA–miRNA–lncRNA Network in Gastric Cancer
Cited by: 27
Author(s): Xiaohao Zheng, Xiaohui Wang, Li Zheng, Hao Zhao, Wenbin Li, Bingzhi Wang, Liyan Xue, Yantao Tian, Yibin Xie
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2019.01408
Identification of Prognostic Genes in Leiomyosarcoma by Gene Co-Expression Network Analysis
Cited by: 4
Author(s): Jun Yang, Cuili Li, Jianyi Zhou, Xiaoquan Liu, Shaohua Wang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2021.695399
Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Cited by: 14
Author(s): Katie Ovens, B. Frank Eames, Ian McQuillan
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00764
Comprehensive Construction of a Circular RNA-Associated Competing Endogenous RNA Network Identified Novel Circular RNAs in Hypertrophic Cardiomyopathy by Integrated Analysis
Cited by: 14
Author(s): Qi Guo, Junjie Wang, Rong Sun, Zhijian He, Qian Chen, Wenhao Liu, Maoxiong Wu, Jigang Bao, Zhaoyu Liu, Jingfeng Wang, Yuling Zhang
Software Mentions: 1
Published: over 4 years ago
10.3389/fphar.2021.474267
The Advantages of Connectivity Map Applied in Traditional Chinese Medicine
Cited by: 9
Author(s): Huimin Jiang, Cheng Hu, Meijuan Chen
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-10-327
Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells
Cited by: 189
Author(s): Mike J. Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath
Software Mentions: 1
Published: over 15 years ago
10.1038/s41598-017-18084-5
A Global View of Transcriptome Dynamics During Male Floral Bud Development in Populus tomentosa
Cited by: 25
Author(s): Zhong Chen, Pian Rao, Xiaoyu Yang, Xiaoxing Su, Tianyun Zhao, Kai Gao, Xiong Yang, Xinmin An
Software Mentions: 1
Published: almost 7 years ago
10.3389/fphar.2020.00881
Integrated PPI- and WGCNA-Retrieval of Hub Gene Signatures Shared Between Barrett's Esophagus and Esophageal Adenocarcinoma
Cited by: 54
Author(s): Asma Sindhoo Nangraj, Gurudeeban Selvaraj, Satyavani Kaliamurthi, Aman Chandra Kaushik, William C. Cho, Dong Wei
Software Mentions: 1
Published: over 4 years ago
10.1186/s12863-015-0311-z
Gene expression in large pedigrees: analytic approaches
Cited by: 5
Author(s): Rita M. Cantor, Heather J. Cordell
Software Mentions: 1
Published: almost 9 years ago
10.18632/aging.102309
Hypermethylated long noncoding RNA MEG3 promotes the progression of gastric cancer
Cited by: 15
Author(s): Lei Ding, Yuan Tian, Ling Wang, Miaomiao Bi, Dengke Teng, Sen Hong
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2019.00874
Data Integration in Poplar: ‘Omics Layers and Integration Strategies
Cited by: 13
Author(s): Deborah Weighill, Timothy J. Tschaplinski, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.202713
LncRNA-mRNA co-expression analysis discovered the diagnostic and prognostic biomarkers and potential therapeutic agents for myocardial infarction
Cited by: 6
Author(s): Xiaocong Zhang, Ziqi Chen, Jiabin Zang, Chun Yao, Jian Shi, Ruqiong Nie, Guifu Wu
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.608017
Identification of Core Genes Related to Progression and Prognosis of Hepatocellular Carcinoma and Small-Molecule Drug Predication
Cited by: 5
Author(s): Nan Jiang, Xinzhuo Zhang, Da‐Lian Qin, Jing Yang, Anguo Wu, Long Wang, Yueshan Sun, Hong Li, Xianfeng Shen, Jing Lin, Fahsai Kantawong, Jianming Wu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2018.00508
Weighted Gene Correlation Network Analysis (WGCNA) Reveals Novel Transcription Factors Associated With Bisphenol A Dose-Response
Cited by: 32
Author(s): Alexandra Maertens, Vy Tran, André Kleensang, Thomas Hartung
Software Mentions: 1
Published: about 6 years ago
10.1186/s12863-018-0648-1
Epigenetics, heritability and longitudinal analysis
Cited by: 5
Author(s): Haakon E. Nustad, Marcio Almeida, Angelo J. Canty, Marissa LeBlanc, Christian M. Page, Phillip E. Melton
Software Mentions: 1
Published: about 6 years ago
10.3389/fgene.2019.01398
Identification of the Key Factors Related to Bladder Cancer by lncRNA-miRNA-mRNA Three-Layer Network
Cited by: 13
Author(s): Xiaoxia Wang, Yanrui Ding, Jie Wang, Yanyan Wu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fphys.2017.00594
Murine Myocardial Transcriptome Analysis Reveals a Critical Role of COPS8 in the Gene Expression of Cullin-RING Ligase Substrate Receptors and Redox and Vesicle Trafficking Pathways
Cited by: 7
Author(s): Ammara Abdullah, Kathleen M. Eyster, Travis Bjordahl, Xiao Peng, Erliang Zeng, Xuejun Wang
Software Mentions: 1
Published: over 7 years ago
10.3389/fphys.2020.623190
Transcriptomic Coupling of PKP2 With Inflammatory and Immune Pathways Endogenous to Adult Cardiac Myocytes
Cited by: 11
Author(s): Marta Pérez-Hernández, Grecia M Marrón-Liñares, Florencia Schlamp, Adriana Heguy, Chantal J.M. van Opbergen, Valeria Mezzano, Mingliang Zhang, Feng-Xia Liang, Marina Cerrone, Mario Delmar
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphys.2017.00822
Alternation of Gut Microbiota in Patients with Pulmonary Tuberculosis
Cited by: 102
Author(s): Moulun Luo, Yong Liu, Pengfei Wu, Dongxia Luo, Qun Sun, Han Zheng, Richard Hu, Stephen J. Pandol, Qingfeng Li, Yuan‐Ping Han, Yilan Zeng
Software Mentions: 1
Published: about 7 years ago
10.1186/s12876-017-0637-2
miR-363-5p as potential prognostic marker for hepatocellular carcinoma indicated by weighted co-expression network analysis of miRNAs and mRNA
Cited by: 18
Author(s): Jun Zhang, Jia Fan, Chongming Zhou, Yanyu Qi
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-21524-5
Consequences of VHL Loss on Global DNA Methylome
Cited by: 14
Author(s): Claire M. Robinson, François Lefebvre, Betty Poon, Aurélie Bousard, Xiaojun Fan, Mark Lathrop, Jörg Tost, William Y. Kim, Yasser Riazalhosseini, Michael Ohh
Software Mentions: 1
Published: almost 7 years ago
10.3389/fgene.2018.00406
De novo Mutations (DNMs) in Autism Spectrum Disorder (ASD): Pathway and Network Analysis
Cited by: 37
Author(s): Aitana Alonso-González, Cristina Rodríguez-Fontenla, Ángel Carracedo
Software Mentions: 1
Published: about 6 years ago
10.1186/s12862-017-1036-6
Annotating long intergenic non-coding RNAs under artificial selection during chicken domestication
Cited by: 12
Author(s): Yun-Mei Wang, Haibo Xu, Mingshan Wang, Newton O. Otecko, Lingqun Ye, Dongdong Wu, Yaping Zhang
Software Mentions: 1
Published: over 7 years ago
10.3389/fgene.2021.615284
Comparative Analyses of Full-Length Transcriptomes Reveal Gnetum luofuense Stem Developmental Dynamics
Cited by: 7
Author(s): Chen Hou, Huiming Lian, Yanling Cai, Yingli Wang, Dongcheng Liang, Boxiang He
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2018.01841
Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis
Cited by: 7
Author(s): Amnah Siddiqa, Elisa Cirillo, Samar Tareen, Amjad Ali, Martina Kutmon, Lars Eijssen, Jamil Ahmad, Chris T. Evelo, Susan L. Coort
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2021.680120
Transcriptome Co-expression Network Analysis Identifies Key Genes Regulating Conchosporangia Maturation of Pyropia haitanensis
Cited by: 3
Author(s): Yi-Sheng Lin, Kai Xu, Yan Xu, Dehua Ji, Changsheng Chen, Wenlei Wang, Chaotian Xie
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.695625
Translational Proteomics Analysis of Anthracycline-Induced Cardiotoxicity From Cardiac Microtissues to Human Heart Biopsies
Cited by: 11
Author(s): Nhan Nguyen, Tancredo Augusto Feitosa de Souza, Marcha Verheijen, Hans Gmuender, Nathalie Selevsek, Ralph Schlapbach, Jos Kleinjans, Danyel Jennen
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2019.00275
Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis
Cited by: 36
Author(s): Hao Gu, Min Yang, Jia Guo, Zhang Chao, Lu-Lu Lin, Yang Liu, Renxiong Wei
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2019.01359
Transcriptome Changes of Mycobacterium marinum in the Process of Resuscitation From Hypoxia-Induced Dormancy
Cited by: 6
Author(s): Jun Jiang, Lin Chen, Junli Zhang, Yuchen Wang, Lianfang Shen, Kun Yang, Wenjun Xiao, Li Yao, Lu Zhang, Jun Liu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fendo.2020.570604
Immune Cell Confrontation in the Papillary Thyroid Carcinoma Microenvironment
Cited by: 56
Author(s): Zhenyu Xie, Xin Li, Yuzhen He, Song Wu, Shiyue Wang, Jing Sun, Yuchen He, Yu Lun, Jian Zhang
Software Mentions: 1
Published: about 4 years ago