Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: WGCNA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/WGCNA

Weighted Correlation Network Analysis
52 versions
Latest release: almost 2 years ago
20 dependent packages
9,120 downloads last month

Papers Mentioning WGCNA 3,479

10.1038/s41598-020-76117-y
Analysis of transcriptional modules during human fibroblast ageing
Cited by: 9
Author(s): Yaelim Lee, G. V. Shivashankar
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.117.043679
Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat
Cited by: 52
Author(s): Philippa Borrill, Sophie A Harrington, Cristóbal Uauy
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-020-76750-7
Transcriptome profiling and weighted gene co-expression network analysis of early floral development in Aquilegia coerulea
Cited by: 11
Author(s): Ya Min, Elena M. Kramer
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.117.042408
A Systemic Analysis of Transcriptomic and Epigenomic Data To Reveal Regulation Patterns for Complex Disease
Cited by: 6
Author(s): Chao Xu, Jigang Zhang, Dongdong Lin, Lan Zhang, Hui Shen, Hong‐Wen Deng
Software Mentions: 1
Published: over 7 years ago
10.1093/dnares/dsaa006
Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco
Cited by: 20
Author(s): Pingping Li, Jianxun Luo, Qingyuan Zheng, Qiansi Chen, Zheyu Niu, Shengchun Xu, Yalong Xu, Lifeng Jin, Guoyun Xu, Xin Lü, Guowang Xu, Gangjun Wang, Jianfeng Shao, Haiming Xu, Peijian Cao, Huina Zhou, Xusheng Wang
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.116.033894
Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans
Cited by: 12
Author(s): Veronica Codoni, Yuna Blum, Mete Civelek, Carole Proust, Oscar Franzén, Johan Björkegren, Wilfried Le Goff, François Cambien, Aldons J. Lusis, David‐Alexandre Trégouët
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-020-75217-z
Quantitative comparison of the biomass-degrading enzyme repertoires of five filamentous fungi
Cited by: 46
Author(s): Magnus Ø. Arntzen, Oskar Bengtsson, Anikó Várnai, Francesco Delogu, Geir Mathiesen, Vincent G. H. Eijsink
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.112.004788
Systems-Level Analysis of Genome-Wide Association Data
Cited by: 43
Author(s): Charles R. Farber
Software Mentions: 1
Published: almost 12 years ago
10.1007/s10142-019-00678-z
Global transcriptome analysis uncovers the gene co-expression regulation network and key genes involved in grain development of wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Qing Chi, Lijian Guo, Meng Ma, Lijian Zhang, Hude Mao, Baowei Wu, Xiangli Liu, Ricardo H. Ramírez-González, Cristóbal Uauy, R. Appels, Huixian Zhao
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21207695
Multiple-Purpose Connectivity Map Analysis Reveals the Benefits of Esculetin to Hyperuricemia and Renal Fibrosis
Cited by: 9
Author(s): Yiming Wang, Jie Zhu, Liang Wang, Tianyu Zhang, Baoxin Huang, Jia Meng, Baoxue Yang, Zhengwei Xie, Hong Zhou
Software Mentions: 1
Published: about 4 years ago
10.1007/s10142-018-0607-y
Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection
Cited by: 15
Author(s): Jinfeng Zhang, Wenjuan Zhao, Rong Fu, Chunyan Fu, Lingxia Wang, Huainian Liu, Shuangcheng Li, Qi Deng, Shiquan Wang, Jun Zhu, Yueyang Liang, Ping Li, Aiping Zheng
Software Mentions: 1
Published: over 6 years ago
10.1186/s12983-019-0336-7
Gene expression vs. sequence divergence: comparative transcriptome sequencing among natural Rhinolophus ferrumequinum populations with different acoustic phenotypes
Cited by: 12
Author(s): Hanbo Zhao, Hui Wang, Tong Liu, Sen Liu, Longru Jin, Xiaobin Huang, Wentao Dai, Keping Sun, Jiang Feng
Software Mentions: 1
Published: about 5 years ago
10.1093/dnares/dsz016
Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)
Cited by: 44
Author(s): Kenta Shirasawa, Tomoya Esumi, Hideki Hirakawa, Hideyuki Tanaka, Akihiro Itai, Andrea Ghelfi, Hideki Nagasaki, Sachiko Isobe
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-81509-9
Protein co-expression networks identified from HOT lesions of ER+HER2–Ki-67high luminal breast carcinomas
Cited by: 3
Author(s): Kimito Yamada, Toshihide Nishimura, Midori Wakiya, Eiichi Satoh, Tetsuya Fukuda, Keigo Amaya, Yoshio Bando, Hiroshi Honda, Takashi Ishikawa
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-81303-7
Weighted gene co-expression network analysis identifies molecular pathways and hub genes involved in broiler White Striping and Wooden Breast myopathies
Cited by: 19
Author(s): Martina Bordini, Martina Zappaterra, Francesca Soglia, Massimiliano Petracci, Roberta Davoli
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpsyt.2021.581093
Gene Expression Differences Between Young Adults Based on Trauma History and Post-traumatic Stress Disorder
Cited by: 0
Author(s): Kaitlin Bountress, Vladimir I. Vladimirov, Gowon O. McMichael, Zachary N. Taylor, Gary Hardiman, Dongjun Chung, Zachary W. Adams, Carla Kmett Danielson, Ananda B. Amstadter
Software Mentions: 1
Published: over 3 years ago
10.3389/fpsyt.2020.580307
A Weighted Gene Co-expression Network Analysis Reveals lncRNA Abnormalities in the Peripheral Blood Associated With Ultra-High-Risk for Psychosis
Cited by: 2
Author(s): Yan Ren, Wei Li, Sha Li, Zhi Li, Jiaying Wang, Hong Yang, Yong Xu
Software Mentions: 1
Published: almost 4 years ago
10.1093/dnares/dsu024
Associative Transcriptomics Study Dissects the Genetic Architecture of Seed Glucosinolate Content in Brassica napus
Cited by: 60
Author(s): Guangyuan Lu, Andrea L. Harper, Martin Trick, Colin Morgan, F C Fråser, Carmel M. O’Neill, Ian Bancroft
Software Mentions: 1
Published: over 10 years ago
10.3389/fpsyt.2020.543893
Non-Coding RNAs in Psychiatric Disorders and Suicidal Behavior
Cited by: 38
Author(s): Yuta Yoshino, Yogesh K. Dwivedi
Software Mentions: 1
Published: about 4 years ago
10.3389/fpsyt.2019.00706
Integrated Analysis of Brain Transcriptome Reveals Convergent Molecular Pathways in Autism Spectrum Disorder
Cited by: 12
Author(s): Xiaodan Li, Yuncong Zhang, Luxi Wang, Yunqing Lin, Zhaomin Gao, Xiaolei Zhan, Yan Huang, Chongde Sun, Dong Wang, Shuang Liang, Lijie Wu
Software Mentions: 1
Published: about 5 years ago
10.3389/fpls.2017.00398
Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development in Lilium “Tiny Padhye”
Cited by: 39
Author(s): Liang Xu, Panpan Yang, Yue Feng, Hua Xu, Yuwei Cao, Yuchao Tang, Suxia Yuan, Xinyan Li, Jun Ming
Software Mentions: 1
Published: over 7 years ago
10.1007/s11897-021-00504-3
Single-Cell RNA Sequencing of the Adult Mammalian Heart—State-of-the-Art and Future Perspectives
Cited by: 9
Author(s): Monika M Gladka
Software Mentions: 1
Published: almost 4 years ago
10.1002/ctm2.225
A prognostic stemness biomarker CCDC80 reveals acquired drug resistance and immune infiltration in colorectal cancer
Cited by: 12
Author(s): Weida Wang, G.X. Wu, Kunhao Bai, Lingling Shu, Peidong Chi, Siyuan He, Xin Huang, Qian-Yi Zhang, Li Liang, Dawei Wang, Yong Dai
Software Mentions: 1
Published: about 4 years ago
10.2174/138920209788921029
One Decade Later: What has Gene Expression Profiling Told us About Neuronal Cell Types, Brain Function and Disease?
Cited by: 3
Author(s): Elizabeth Díaz
Software Mentions: 1
Published: over 15 years ago
10.3389/fpls.2018.01155
Shedding Light on Chemically Mediated Tri-Trophic Interactions: A 1H-NMR Network Approach to Identify Compound Structural Features and Associated Biological Activity
Cited by: 10
Author(s): Lora A. Richards, Celso José Bruno de Oliveira, Lee A. Dyer, Arran Rumbaugh, Federico Urbano-Muñoz, Ian S. Wallace, Craig D. Dodson, Christopher S. Jeffrey
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2021.679629
Transcriptome Analysis of Resistance to Fusarium Wilt in Mung Bean (Vigna radiata L.)
Cited by: 6
Author(s): Yuan‐Jen Chang, Feifei Sun, Shufeng Sun, Lanfen Wang, Jing Wu, Zhendong Zhu
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2016.00497
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System
Cited by: 67
Author(s): Collin M. Timm, Dale A. Pelletier, Sara Jawdy, Lee E. Gunter, Jeremiah A. Henning, Nancy L. Engle, Jayde A. Aufrecht, Emily Gee, Intawat Nookaew, Zamin K. Yang, Tse Yuan S Lu, Timothy J. Tschaplinski, Mitchel J. Doktycz, Gerald A. Tuskan, David J. Weston
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms21030699
Review—Current Concepts in Inflammatory Skin Diseases Evolved by Transcriptome Analysis: In-Depth Analysis of Atopic Dermatitis and Psoriasis
Cited by: 36
Author(s): Julius Schwingen, Mustafa Kaplan, Florian C. Kurschus
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-021-85020-z
Systems-wide effects of short-term feed deprivation in obese mice
Cited by: 2
Author(s): Daniel S. Andersen, Henrik Munch Roager, Li Zhang, Janne Marie Moll, Henrik Lauritz Frandsen, Niels Banhos Danneskiold‐Samsøe, Axel Kornerup Hansen, Karsten Kristiansen, Tine Rask Licht, Susanne Brix
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2020.01256
Transcriptome and Flavonoids Metabolomic Analysis Identifies Regulatory Networks and Hub Genes in Black and White Fruits of Lycium ruthenicum Murray
Cited by: 16
Author(s): Tingting Li, Yunfang Fan, Huan Qin, Guoli Dai, Guo‐Xiu Li, Yanlong Li, Jingjin Wang, Yue Yin, Fang Chen, Xiaoya Qin, Yang Cao, Lin Tang
Software Mentions: 1
Published: over 4 years ago
10.7150/ijbs.51309
CDH1 is Identified as A Therapeutic Target for Skin Regeneration after Mechanical Loading
Cited by: 9
Author(s): Xiaolu Huang, Xiao Liang, Yiwen Zhou, Haizhou Li, Hengyu Du, Yinjun Suo, Wenhui Liu, Rui Jin, Bangda Chai, Ran Duan, Qingfeng Li
Software Mentions: 1
Published: almost 4 years ago
10.7150/ijbs.59559
Upregulation of ATP Binding Cassette Subfamily C Member 5 facilitates Prostate Cancer progression and Enzalutamide resistance via the CDK1-mediated AR Ser81 Phosphorylation Pathway
Cited by: 7
Author(s): Guangjie Ji, Shiming He, Cong Huang, Yanqing Gong, Xuesong Li, Liqun Zhou
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2020.00224
Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Cited by: 11
Author(s): Lauriane Hennet, Angélique Berger, Noemí Trabanco, Emeline Ricciuti, Jean François Dufayard, Stéphanie Bocs, Denis Bastianelli, Laurent Bonnal, Sandrine Roques, Laura Rossini, Delphine Luquet, Nancy Terrier, David Pot
Software Mentions: 1
Published: over 4 years ago
10.1186/s13046-018-1002-1
Classification of triple-negative breast cancers based on Immunogenomic profiling
Cited by: 274
Author(s): Hanlin Yin, Zhongshan Jiang, Chen Cai, Xiaosheng Wang
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms21041445
Cross-Species Root Transcriptional Network Analysis Highlights Conserved Modules in Response to Nitrate between Maize and Sorghum
Cited by: 5
Author(s): Hongyang Du, Lei Ning, Bing He, Yuancong Wang, Min Ge, Jing Xu, Han Zhao
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2018.01139
The Galling Truth: Limited Knowledge of Gall-Associated Volatiles in Multitrophic Interactions
Cited by: 13
Author(s): Renée M. Borges
Software Mentions: 1
Published: over 6 years ago
10.1186/s13046-020-01803-8
Hepatitis B virus P protein initiates glycolytic bypass in HBV-related hepatocellular carcinoma via a FOXO3/miRNA-30b-5p/MINPP1 axis
Cited by: 47
Author(s): Wenbiao Chen, Jingjing Jiang, Lan Gong, Zheyue Shu, Da‐Xiong Xiang, Xujun Zhang, Kefan Bi, Hongyan Diao
Software Mentions: 1
Published: almost 4 years ago
10.1186/s13046-020-01782-w
Alcoholic fatty liver disease inhibited the co-expression of Fmo5 and PPARα to activate the NF-κB signaling pathway, thereby reducing liver injury via inducing gut microbiota disturbance
Cited by: 27
Author(s): Ling Kong, Jing Chen, Xiao li Ji, Qian Qin, Hui Yang, Dan Liú, De liang Li, Mei ling Sun
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2021.668736
Comparison of Transcriptional Response of C3 and C4 Plants to Drought Stress Using Meta-Analysis and Systems Biology Approach
Cited by: 7
Author(s): Ahmad Tahmasebi, Ali Niazi‎
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2017.01371
Phenotypic and Comparative Transcriptome Analysis of Different Ploidy Plants in Dendrocalamus latiflorus Munro
Cited by: 11
Author(s): Guirong Qiao, Mingying Liu, Kunlin Song, Haiying Li, Haiming Yang, Yafang Yin, Renying Zhuo
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2017.00092
De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues
Cited by: 19
Author(s): Shi-Fang Wu, Jing Liu, Guoju Chen, Hancai Chen, Bihao Cao, Changming Chen
Software Mentions: 1
Published: almost 8 years ago
10.3390/jof6030108
Modeling Approaches Reveal New Regulatory Networks in Aspergillus fumigatus Metabolism
Cited by: 2
Author(s): Enzo Acerbi, Marcela Hortová-Kohoutková, Tsokyi Choera, Nancy P. Keller, Jan Frič, Fabio Stella, Luigina Romani, Teresa Zelante
Software Mentions: 1
Published: over 4 years ago
10.3390/jof7040270
Identifying Conserved Generic Aspergillus spp. Co-Expressed Gene Modules Associated with Germination Using Cross-Platform and Cross-Species Transcriptomics
Cited by: 4
Author(s): Tim J. H. Baltussen, Jordy P. M. Coolen, Paul E. Verweij, Jan Dijksterhuis, Willem J. G. Melchers
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.705321
A Tissue-Specific Landscape of Alternative Polyadenylation, lncRNAs, TFs, and Gene Co-expression Networks in Liriodendron chinense
Cited by: 9
Author(s): Zhonghua Tu, Yu-Fang Shen, Shaoying Wen, Huanhuan Liu, Lingmin Wei, Huogen Li
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/9827349
The Effect of Inflammation on the Formation of Thyroid Nodules
Cited by: 4
Author(s): Zexin Li, Yiteng Huang, Xiang Cheng, Chiju Wei, Peixuan Yang, Weilai Xu
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2020.604849
Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection
Cited by: 11
Author(s): Alline Sekiya, Felipe Garbelini Marques, Thiago Falda Leite, Thaís Regiani Cataldi, Fabrício Edgar de Moraes, Ana Lúcia Mendes Pinheiro, Mônica Teresa Veneziano Labate, Carlos Alberto Labate
Software Mentions: 1
Published: almost 4 years ago
10.1007/s12170-012-0280-y
Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular Diseases
Cited by: 47
Author(s): Qingying Meng, Ville-Petteri Mäkinen, Helen Luk, Xia Yang
Software Mentions: 1
Published: about 12 years ago
10.3389/fpls.2015.00829
Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach
Cited by: 16
Author(s): Wenchuan Xie, Junfeng Huang, Yang Liu, Rao Jianan, Da Luo, Miao He
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2020.528108
Comparative Genomics of Spatholobus suberectus and Insight Into Flavonoid Biosynthesis
Cited by: 5
Author(s): Shuangshuang Qin, Kunhua Wei, Zhan-Hu Cui, Ying Liang, Mingjie Li, Li Gu, Chuyun Yang, Xiaolei Zhou, Linxuan Li, Wei Xü, Can Liu, Miao Jin, Zhongyi Zhang
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2020.616338
Interspecific Variation in the Unsaturation Level of Seed Oils Were Associated With the Expression Pattern Shifts of Duplicated Desaturase Genes and the Potential Role of Other Regulatory Genes
Cited by: 3
Author(s): Mengli Wang, Lexuan Gao, Gengyun Li, Chengchuan Zhou, Jinjing Jian, Zhen Xing, Yuguo Wang, Wenju Zhang, Song Zhang, Yonghong Hu, Ji Hyun Yang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2021.624319
Grafting Delays Watermel on Fruit Ripening by Altering Gene Expression of ABA Centric Phytohormone Signaling
Cited by: 5
Author(s): Sheng Guo, Honghe Sun, Jiaxing Tian, Guoyu Zhang, Guoyi Gong, Yi Ren, Jie Zhang, Maoying Li, Haiying Zhang, Haizhen Li, Yong Xu
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2014.00565
Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Cited by: 38
Author(s): Heidi M. Appel, Howard W. Fescemyer, Jürgen Ehlting, David J. Weston, Erin MacNeal Rehrig, Trupti Joshi, Dong Xu, Jöerg Bohlmann, Jack C. Schultz
Software Mentions: 1
Published: about 10 years ago
10.7150/ijms.61771
PD-L1 correlated gene expression profiles and tumor infiltrating lymphocytes in pancreatic cancer
Cited by: 2
Author(s): Jiajin Li, Lu Yin, Yumei Chen, Shuxian An, Yi Xiong, Gang Huang, Jianjun Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2018.00137
A Systems Biology Study in Tomato Fruit Reveals Correlations between the Ascorbate Pool and Genes Involved in Ribosome Biogenesis, Translation, and the Heat-Shock Response
Cited by: 9
Author(s): Rebecca Stevens, Piérre Baldet, Jean‐Paul Bouchet, Mathilde Causse, Catherine Deborde, Claire Deschodt, Mireille Faurobert, Cécile Garchery, Virginie Garcia, Hélène Gautier, Barbara Gouble, Mickaël Maucourt, Annick Moing, David L. Page, J. Petit, Jean‐Luc Poëssel, Vincent Truffault, Christophe Rothan
Software Mentions: 1
Published: almost 7 years ago
10.3389/fphys.2019.00662
Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks
Cited by: 28
Author(s): Wu Shi, Rongjun Zou, Minglei Yang, Lei Mai, Jiangnan Ren, Ji Wen, Zhaoshi Liu, Renxu Lai
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21051824
The Role of Gibberellins in Regulation of Nitrogen Uptake and Physiological Traits in Maize Responding to Nitrogen Availability
Cited by: 20
Author(s): Yubin Wang, Qizheng Yao, Yushi Zhang, Yuexia Zhang, Jiapeng Xing, Benzhou Yang, Guohua Mi, Zhaohu Li, Mingcai Zhang
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21051675
Genetic Identification and Transcriptome Analysis of Lintless and Fuzzless Traits in Gossypium arboreum L.
Cited by: 18
Author(s): Xueying Liu, Philippe Moncuquet, Qian Zhu, Warwick N. Stiller, Zhengsheng Zhang, Iain W. Wilson
Software Mentions: 1
Published: over 4 years ago
10.22038/IJBMS.2018.29498.7123
Gene co-expression network analysis identifies BRCC3 as a key regulator in osteogenic differentiation of osteoblasts through a β-catenin signaling dependent pathway.
Cited by: 0
Author(s): Lixiong Cai, Zhiqian Huo, Huiling Yang, HE Feng-chun, Zheng-lin Cao, Feng Wu, Lianjun Liu, Bing‐Yin Sun
Software Mentions: 1
Published: almost 6 years ago
10.3389/fphys.2019.00275
Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis
Cited by: 36
Author(s): Hao Gu, Min Yang, Jia Guo, Zhang Chao, Lu-Lu Lin, Yang Liu, Renxiong Wei
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/6664791
Coexpressed Genes That Promote the Infiltration of M2 Macrophages in Melanoma Can Evaluate the Prognosis and Immunotherapy Outcome
Cited by: 13
Author(s): Kexin Yan, Yutao Wang, Yuxiu Lu, Zhangyong Yan
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2018.01841
Biological Pathways Leading From ANGPTL8 to Diabetes Mellitus–A Co-expression Network Based Analysis
Cited by: 7
Author(s): Amnah Siddiqa, Elisa Cirillo, Samar Tareen, Amjad Ali, Martina Kutmon, Lars Eijssen, Jamil Ahmad, Chris T. Evelo, Susan L. Coort
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2016.01155
Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds
Cited by: 33
Author(s): Haifeng Geng, Mary Bao Tran-Gyamfi, Todd W. Lane, Kenneth L. Sale, Eizadora T. Yu
Software Mentions: 1
Published: over 8 years ago
10.1002/ctm2.330
Forty‐three key gene expressions involved in the effect of indoleamine 2,3‐dioxygenase 1 expression on cancer prognosis may be a potential indoleamine 2,3‐dioxygenase 1 inhibitor biomarker
Cited by: 0
Author(s): Weirui Li, Leilei Guo, Zikang Xing, Xin Fang, Heng Liang, Shengnan Zhang, Lei Shi, Chunxiang Kuang, Leming Shi, Yuanting Zheng, Yue‐Qing Hu, Qing Yang
Software Mentions: 1
Published: almost 4 years ago
10.1155/2021/5518908
Screening Prognosis-Related lncRNAs Based on WGCNA to Establish a New Risk Score for Predicting Prognosis in Patients with Hepatocellular Carcinoma
Cited by: 4
Author(s): Xueliang Zhou, Mengmeng Dou, Zaoqu Liu, Dechao Jiao, Zhaonan Li, Jianjian Chen, Jing Li, Yuan Yao, Lifeng Li, Yahua Li, Xinwei Han
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2019.00352
Alterations of the Mice Gut Microbiome via Schistosoma japonicum Ova-Induced Granuloma
Cited by: 29
Author(s): Yanqing Zhao, Shuxu Yang, Bei Li, Wei Li, Jue Wang, Zongyun Chen, Jing Yang, Huabing Tan, Jian Li
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2015.00487
Identification of a transporter Slr0982 involved in ethanol tolerance in cyanobacterium Synechocystis sp. PCC 6803
Cited by: 25
Author(s): Yanan Zhang, Xiangfeng Niu, Mengliang Shi, Guangsheng Pei, Xiaoqing Zhang, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 9 years ago
10.3389/fmed.2020.584747
Integrating Tumor Stroma Biomarkers With Clinical Indicators for Colon Cancer Survival Stratification
Cited by: 4
Author(s): Yong Chen, Wenlong Wang, Bo Jiang, Lei Yao, Fada Xia, Xinying Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2020.592084
Therapeutic Potential of Triptolide as an Anti-Inflammatory Agent in Dextran Sulfate Sodium-Induced Murine Experimental Colitis
Cited by: 31
Author(s): Bufu Tang, Jinyu Zhu, Baohui Zhang, Fazong Wu, Yajie Wang, Qiaoyou Weng, Shiji Fang, Zheng Lu, Yang Yang, Rongfang Qiu, Minjiang Chen, Min Xu, Zhongwei Zhao, Jiansong Ji
Software Mentions: 1
Published: about 4 years ago
10.1038/s41388-020-1379-0
Targeting the MAPK7/MMP9 axis for metastasis in primary bone cancer
Cited by: 21
Author(s): Darrell Green, Heather Eyre, Archana Archana, Jessica Taylor, Jason Chu, Lee Jeys, Vaiyapuri P. Sumathi, Aman S. Coonar, Doris M. Rassl, Muhammad Babur, Duncan Forster, Saba Alzabin, Frida Ponthan, Adam McMahon, Brian Bigger, Tristan A. Reekie, Kaye J. Williams, Tamás Dalmay, William D. Fraser, Katherine G. Finegan
Software Mentions: 1
Published: over 4 years ago
10.1038/s41388-021-01859-6
LncRNA MIR17HG promotes colorectal cancer liver metastasis by mediating a glycolysis-associated positive feedback circuit
Cited by: 39
Author(s): Senlin Zhao, Bingjie Guan, Yushuai Mi, Debing Shi, Ping Wei, Yanzi Gu, Sanjun Cai, Ye Xu, Xinxiang Li, Dongwang Yan, Mingzhu Huang, Dawei Li
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms21228618
Identification and Characterization of the Intra-Articular Microbiome in the Osteoarthritic Knee
Cited by: 11
Author(s): Joseph C. Tsai, Grant Casteneda, Abby Lee, Kypros Dereschuk, Wei Tse Li, Jaideep Chakladar, Alecio F. Lombardi, Weg M. Ongkeko, Eric Y. Chang
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2020.01070
Human Monocyte Subset Distinctions and Function: Insights From Gene Expression Analysis
Cited by: 48
Author(s): Sarah Cormican, Matthew D. Griffin
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2020.603337
Identifying Potential Candidate Hub Genes and Functionally Enriched Pathways in the Immune Responses to Quadrivalent Inactivated Influenza Vaccines in the Elderly Through Co-Expression Network Analysis
Cited by: 1
Author(s): Jing Yang, Jiayou Zhang, Renfeng Fan, Wei Zhao, Han Tian, Kai Duan, Xinguo Li, Peiyu Zeng, Jinglong Deng, Jikai Zhang, Xiaoming Yang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2020.01281
Identification of Immune-Related Genes Contributing to the Development of Glioblastoma Using Weighted Gene Co-expression Network Analysis
Cited by: 30
Author(s): Yahui Kong, Zichao Feng, Yulin Zhang, Xiaofei Liu, Yuan Ma, Zhimin Zhao, Bin Huang, An-Jing Chen, Di Zhang, Frits Thorsen, Jian Wang, Ning Yang, Xingang Li
Software Mentions: 1
Published: over 4 years ago
10.1155/2021/5533483
Altered Gene Expression in the Testis of Infertile Patients with Nonobstructive Azoospermia
Cited by: 3
Author(s): Zhiqiang Wang, Zhongjun Ding, Yan Guan, Chunhui Liu, Linjun Wang, Wen-Sheng Shan, Jie Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.730300
Integration of Molecular Inflammatory Interactome Analyses Reveals Dynamics of Circulating Cytokines and Extracellular Vesicle Long Non-Coding RNAs and mRNAs in Heroin Addicts During Acute and Protracted Withdrawal
Cited by: 7
Author(s): Zunyue Zhang, Hongjin Wu, Qingyan Peng, Zhenrong Xie, Fengrong Chen, Yuru Ma, Yizhi Zhang, Yong Zhou, Jun Yang, Cheng Chen, Shaoyou Li, Yongjin Zhang, Wen Tian, Yuan Wang, Yu Xu, Huayou Luo, Mei Zhu, Yi‐Qun Kuang, Juehua Yu, Kunhua Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2020.00616
A Signaling Pathway to Mediate the Combined Immunomodulation of Acetylcholine and Enkephalin in Oyster Crassostrea gigas
Cited by: 3
Author(s): Zhaoqun Liu, Zhi Zhou, Lingling Wang, Yukun Zhang, Yanan Zong, Yan Zheng, Meijia Li, Weilin Wang, Linsheng Song
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2020.01194
Expression of S100A Alarmins in Cord Blood Monocytes Is Highly Associated With Chorioamnionitis and Fetal Inflammation in Preterm Infants
Cited by: 12
Author(s): Veronika Golubinskaya, Henri Puttonen, Ing‐Marie Fyhr, Halfdan Rydbeck, Ann Hellström, Bo Jacobsson, Holger Nilsson, Carina Mallard, Karin Sävman
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2021.739514
Circulating Metabolomic Signature in Generalized Pustular Psoriasis Blunts Monocyte Hyperinflammation by Triggering Amino Acid Response
Cited by: 7
Author(s): Na Yu, Peng Chen, Wenjuan Chen, Zengqi Sun, Jianfeng Zheng, Shujie Zhang, Yangfeng Ding, Yujun Shi
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2019.00402
Transcriptional Analysis of the Human IgE-Expressing Plasma Cell Differentiation Pathway
Cited by: 10
Author(s): Faruk Ramadani, H. J. M. Bowen, Hannah Gould, David Fear
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/5584684
RAMRSGL: A Robust Adaptive Multinomial Regression Model for Multicancer Classification
Cited by: 0
Author(s): Lei Wang, Juntao Li, Juanfang Liu, Mingming Chang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2019.01459
A Combined Transcriptomic and Genomic Analysis Identifies a Gene Signature Associated With the Response to Anti-TNF Therapy in Rheumatoid Arthritis
Cited by: 22
Author(s): Adrià Aterido, Juan D. Cañete, Jesús Tornero, Francisco J. Blanco, Benjamín Fernández‐Gutiérrez, Carolina Pérez, Mercedes Alperi-López, A Olivé, Hèctor Corominas, Víctor M. Martínez‐Taboada, Inmaculada Fernández González, Antonio Fernández‐Nebro, Alba Erra, María López-Lasanta, Mireia López-Corbeto, Núria Palau, Sara Marsal, Antonio Julià
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2020.01795
Multiple Processes May Involve in the IgG4-RD Pathogenesis: An Integrative Study via Proteomic and Transcriptomic Analysis
Cited by: 8
Author(s): Shaozhe Cai, Yu Chen, Shaochong Lin, Cong Ye, Fang Zheng, Lingli Dong
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2021.702733
Transcriptome Analysis of CCR9+ T Helper Cells From Primary Sjögren’s Syndrome Patients Identifies CCL5 as a Novel Effector Molecule
Cited by: 8
Author(s): Anneline C. Hinrichs, Sofie L M Blokland, Ana P Lopes, Catharina G K Wichers, Aike A. Kruize, Aridaman Pandit, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.624614
Predicted Disease-Specific Immune Infiltration Patterns Decode the Potential Mechanisms of Long Non-Coding RNAs in Primary Sjogren’s Syndrome
Cited by: 6
Author(s): Caiqi Cheng, Jun Zhou, Ruiying Chen, Yo Shibata, Ryouichi Tanaka, Jun Wang, Jiaming Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.659193
SDF4 Is a Prognostic Factor for 28-Days Mortality in Patients With Sepsis via Negatively Regulating ER Stress
Cited by: 10
Author(s): Tingting Zhu, Qun Su, Cuili Wang, Lingling Shen, Hongjun Chen, Shi Feng, Xing Peng, Siyu Chen, Yucheng Wang, Hong Jiang, Jianghua Chen
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00857
Identification of Gene Signatures for Diagnosis and Prognosis of Hepatocellular Carcinomas Patients at Early Stage
Cited by: 14
Author(s): Xiaoning Gan, Yue Luo, Guanqi Dai, Junhao Lin, Xinhui Liu, Zhang Xiang-qun, Aimin Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.00981
Identification of KIAA0513 and Other Hub Genes Associated With Alzheimer Disease Using Weighted Gene Coexpression Network Analysis
Cited by: 20
Author(s): Min Zhu, Longfei Jia, Fangyu Li, Jianping Jia
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22010454
RNA-Seq Provides New Insights into the Molecular Events Involved in “Ball-Skin versus Bladder Effect” on Fruit Cracking in Litchi
Cited by: 10
Author(s): Jun Wang, Xuehong Wu, Yong Tang, Jian Guo Li, Ming Zhao
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2018.00102
Identification and Functional Analysis of Long Intergenic Non-coding RNAs Underlying Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Cheng Zou, Li Long, Xiangdong Cheng, Cencen Li, Yuhua Fu, Fang Cui, Changchun Li
Software Mentions: 1
Published: over 6 years ago
10.3390/ijms21249417
Activation of the Ion Channel TRPV4 Induces Epithelial to Mesenchymal Transition in Breast Cancer Cells
Cited by: 20
Author(s): Iman Azimi, Mélanie Robitaille, Kaela Armitage, Choon Leng So, Michael J. G. Milevskiy, Korinne Northwood, Huai Fang Lim, Erik W. Thompson, Sarah J. Roberts‐Thomson, Gregory R. Monteith
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2020.00378
Coexpression Analysis Reveals Dynamic Modules Regulating the Growth and Development of Cirri in the Rattans (Calamus simplicifolius and Daemonorops jenkinsiana)
Cited by: 4
Author(s): Jiongliang Wang, Xuelian Ma, Jiaotong Yang, Yanan Hui, Jiajie She, Tian Tian, Zhongqiu Li, Wenying Xu, Zhimin Gao, Zhen Su, Hansheng Zhao
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.00342
Identification of Crucial Genes Associated With Immune Cell Infiltration in Hepatocellular Carcinoma by Weighted Gene Co-expression Network Analysis
Cited by: 42
Author(s): Dengchuan Wang, Jun Li, Shengshuo Liu, Wenli Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2019.01408
Identification of Prognostic Genes in Leiomyosarcoma by Gene Co-Expression Network Analysis
Cited by: 4
Author(s): Jun Yang, Cuili Li, Jianyi Zhou, Xiaoquan Liu, Shaohua Wang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fgene.2021.695399
Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Cited by: 14
Author(s): Katie Ovens, B. Frank Eames, Ian McQuillan
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00764
Comprehensive Construction of a Circular RNA-Associated Competing Endogenous RNA Network Identified Novel Circular RNAs in Hypertrophic Cardiomyopathy by Integrated Analysis
Cited by: 14
Author(s): Qi Guo, Junjie Wang, Rong Sun, Zhijian He, Qian Chen, Wenhao Liu, Maoxiong Wu, Jigang Bao, Zhaoyu Liu, Jingfeng Wang, Yuling Zhang
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2019.00874
Data Integration in Poplar: ‘Omics Layers and Integration Strategies
Cited by: 13
Author(s): Deborah Weighill, Timothy J. Tschaplinski, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2021.608017
Identification of Core Genes Related to Progression and Prognosis of Hepatocellular Carcinoma and Small-Molecule Drug Predication
Cited by: 5
Author(s): Nan Jiang, Xinzhuo Zhang, Da‐Lian Qin, Jing Yang, Anguo Wu, Long Wang, Yueshan Sun, Hong Li, Xianfeng Shen, Jing Lin, Fahsai Kantawong, Jianming Wu
Software Mentions: 1
Published: almost 4 years ago
10.1002/ctm2.343
Clinical significance and immune landscapes of stemness‐related and immune gene set‐based signature in oral cancer
Cited by: 12
Author(s): Xian Lin, Xiong-Zhou Zheng, Baichun Yang, Jian Chen, Qin Xu, Qingwen Wang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fnagi.2018.00259
Gene Expression Analysis Reveals Novel Gene Signatures Between Young and Old Adults in Human Prefrontal Cortex
Cited by: 25
Author(s): Huanming Yang, Pan Jiang, Ying Xin, Xiang-Nan Mi, Jiahui Wang, Qin Gao, Hongyu Luo
Software Mentions: 1
Published: over 6 years ago