10.1186/s12864-021-07763-3

Transcriptome analysis reveals Vernalization is independent of cold acclimation in Arabidopsis
Cited by: 12
Author(s): Fēi Li, Qian Hu, Fadi Chen, Jingle Jiang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-44798-9

Biology and Bias in Cell Type-Specific RNAseq of Nucleus Accumbens Medium Spiny Neurons
Cited by: 23
Author(s): Hope Kronman, Felix Richter, Benoît Labonté, Ramesh Chandra, Shan Zhao, Gabriel E. Hoffman, Mary Kay Lobo, Eric E. Schadt, Eric J. Nestler
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10100747

Common Nevus and Skin Cutaneous Melanoma: Prognostic Genes Identified by Gene Co-Expression Network Analysis
Cited by: 16
Author(s): Lingge Yang, Yu Xu, Yan Yan, Peng Luo, Shiqi Chen, Biqiang Zheng, Wangjun Yan, Yong Chen, Chunmeng Wang
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-021-07557-7

Post-diapause transcriptomic restarts: insight from a high-latitude copepod
Cited by: 5
Author(s): Vittoria Roncalli, Matthew Cieslak, Ann M. Castelfranco, Russell R. Hopcroft, Daniel K. Hartline, Petra H. Lenz
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.16896

Co-expression network analysis identified six hub genes in association with metastasis risk and prognosis in hepatocellular carcinoma
Cited by: 54
Author(s): Pengfei Chen, Fan Wang, Jianhua Feng, Rui Zhou, Ying Chang, Jing Liu, Qiu Zhao
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-019-45744-5

Genome wide identification and comparative analysis of glutathione transferases (GST) family genes in Brassica napus
Cited by: 31
Author(s): Lijuan Wei, Yan Zhu, Ruiying Liu, Aoxiang Zhang, Meicheng Zhu, Wen Xu, Lin Ai, Kun Lu, Jiana Li
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/6140728

Identification of Key Modules, Hub Genes, and Noncoding RNAs in Chronic Rhinosinusitis with Nasal Polyps by Weighted Gene Coexpression Network Analysis
Cited by: 8
Author(s): Xinming Zhou, Xiaoyue Zhen, Yiqing Liu, Zhaoyang Cui, Zhiyong Yue, Anting Xu, Jie Han
Software Mentions: 2
Published: almost 7 years ago

10.18632/aging.102231

TPM2 as a potential predictive biomarker for atherosclerosis
Cited by: 39
Author(s): Ling‐Bing Meng, Mengjie Shan, Yong Qiu, Ruomei Qi, Zemou Yu, Peng Guo, Chen-Yi Di, Tao Gong
Software Mentions: 2
Published: about 7 years ago

10.1155/2020/8824717

Identification of a Set of Genes Improving Survival Prediction in Kidney Renal Clear Cell Carcinoma through Integrative Reanalysis of Transcriptomic Data
Cited by: 4
Author(s): Banlai Ruan, Xianzhen Feng, Xueyi Chen, Zhiwei Dong, Qi Wang, Kai Xu, Jinping Tian, Jie Liu, Ziyin Chen, Wenzhen Shi, Man Wang, Qian Lü, Qianshan Ding
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-017-4005-y

Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico
Cited by: 12
Author(s): Matthew A. Kost, Hugo Perales, Saranga Wijeratne, Asela J. Wijeratne, Eric J. Stockinger, Kristin L. Mercer
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-021-85000-3

Multi-factor mediated functional modules identify novel classification of ulcerative colitis and functional gene panel
Cited by: 6
Author(s): Lijie Lai, Li Hanyang, Qi Feng, Jun Shen, Zhihua Ran
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-72197-y

Experimental autoimmune encephalomyelitis is associated with changes of the microbiota composition in the gastrointestinal tract
Cited by: 32
Author(s): David M. Johanson, Jennifer E. Goertz, Ioana Marin, John Costello, Christopher C. Overall, Alban Gaultier
Software Mentions: 2
Published: about 6 years ago

10.1155/2021/5955343

High-Throughput Screen of Natural Compounds and Biomarkers for NSCLC Treatment by Differential Expression and Weighted Gene Coexpression Network Analysis (WGCNA)
Cited by: 1
Author(s): Ling Kui, Min Li, Xiaonan Yang, Ling Yang, Qinghua Kong, Yunbing Pan, Zetan Xu, Shouling Wang, Dan-Dan Mo, Yang Dong, Yao Liu, Jun Miao
Software Mentions: 2
Published: about 5 years ago

10.1016/j.ebiom.2020.102862

Hematopoietic stem-cell senescence and myocardial repair - Coronary artery disease genotype/phenotype analysis of post-MI myocardial regeneration response induced by CABG/CD133+ bone marrow hematopoietic stem cell treatment in RCT PERFECT Phase 3
Cited by: 18
Author(s): Markus Wolfien, Denise Klatt, Amankeldi A. Salybekov, Masaaki, Miki Komatsu-Horii, Ralf Gaebel, Julia Philippou‐Massier, Eric Schrinner, Hiroshi Akimaru, Erika Akimaru, Róbert Dávid, Jens Garbade, Jan Gummert, Axel Haverich, Holger Hennig, Hiroto Iwasaki, Alexander Kaminski, Atsuhiko Kawamoto, Christian Klopsch, Johannes T. Kowallick, Stefan Krebs, Julia Nesteruk, Hermann Reichenspurner, Christian Ritter, Christof Stamm, Ayumi Tani-Yokoyama, Helmut Blum, Olaf Wolkenhauer, Axel Schambach, Takayuki Asahara, Gustav Steinhoff
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-47218-0

E2F1 Drives Breast Cancer Metastasis by Regulating the Target Gene FGF13 and Altering Cell Migration
Cited by: 48
Author(s): Daniel P. Hollern, Matthew Swiatnicki, Jonathan Rennhack, Sean A. Misek, Brooke C. Matson, Andrew McAuliff, Kathleen A. Gallo, Kathleen M. Caron, Eran R. Andrechek
Software Mentions: 2
Published: over 7 years ago

10.3390/genes11010106

Hormonal and Molecular Regulation of Phallus Differentiation in a Marsupial Tammar Wallaby
Cited by: 0
Author(s): Yu Chen, Marilyn B. Renfree
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.20537

Identification of candidate genes related to pancreatic cancer based on analysis of gene co-expression and protein-protein interaction network
Cited by: 10
Author(s): Tiejun Zhang, Xiaojuan Wang, Z.Q. Yue
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2020.00687

Genome and Transcriptome Analyses Provide Insight Into the Omega-3 Long-Chain Polyunsaturated Fatty Acids Biosynthesis of Schizochytrium limacinum SR21
Cited by: 17
Author(s): Limin Liang, Xinqing Zheng, Wenfang Fan, Duo Chen, Zhen Huang, Jiangtao Peng, Jinmao Zhu, Weiqi Tang, Youqiang Chen, Ting Xue
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20163930

Depicting the Core Transcriptome Modulating Multiple Abiotic Stresses Responses in Sesame (Sesamum indicum L.)
Cited by: 45
Author(s): Komivi Dossa, Marie Ali Mmadi, Rong Zhou, Tianyuan Zhang, Ruqi Su, Yujuan Zhang, Linhai Wang, Jun You
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-48374-z

Dickkopf-related protein 1 is a progestomedin acting on the bovine embryo during the morula-to-blastocyst transition to program trophoblast elongation
Cited by: 14
Author(s): Paula Tríbulo, María Belén Rabaglino, Martin Bonet Bo, Luciano de Rezende Carvalheira, Jeanette V. Bishop, Thomas Hansen, Peter J. Hansen
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-020-6676-z

Identification of potential novel biomarkers to differentiate malignant thyroid nodules with cytological indeterminate
Cited by: 9
Author(s): Dandan Wu, Shudong Hu, Yongzhong Hou, Yingying He, Shubai Liu
Software Mentions: 2
Published: over 6 years ago

10.15252/emmm.201911942

A Parkinson's disease Circ <scp>RNA</scp> s Resource reveals a link between circ <scp>SLC</scp> 8A1 and oxidative stress
Cited by: 59
Author(s): Mor Hanan, Alon Simchovitz, Nadav Yayon, Shani Vaknine, Roni Cohen‐Fultheim, Miriam Karmon, Nimrod Madrer, Talia Miriam Rohrlich, Moria Maman, Estelle R. Bennett, David Greenberg, Eran Meshorer, Erez Y. Levanon, Hermona Soreq, Sebastián Kadener
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-018-5117-8

Genome-wide identification of oil biosynthesis-related long non-coding RNAs in allopolyploid Brassica napus
Cited by: 37
Author(s): Enhui Shen, Xintian Zhu, Shuijin Hua, Hongyu Chen, Chu-Yu Ye, Longhua Zhou, Qing Liu, Qian‐Hao Zhu, Longjiang Fan, Xi Chen
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.01314

Network-Based Analysis of OMICs Data to Understand the HIV–Host Interaction
Cited by: 13
Author(s): Sergey Ivanov, Alexey Lagunin, Dmitry Filimonov, O. Tarasova
Software Mentions: 2
Published: over 6 years ago

10.3390/jpm11030193

Data-Driven Math Model of FLT3-ITD Acute Myeloid Leukemia Reveals Potential Therapeutic Targets
Cited by: 10
Author(s): David J. Wooten, Melat T. Gebru, Honggang Wang, Réka Albert
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-021-08034-w

Identification of the potential novel biomarkers as susceptibility gene for Wilms tumor
Cited by: 2
Author(s): Li Liu, Zhe Song, Xudong Gao, Xian Chen, Xiaobin Wu, Mi Wang, Yu-De Hong
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11050535

Spatio-Temporal Roles of ASD-Associated Variants in Human Brain Development
Cited by: 3
Author(s): Yujin Kim, Joon Yong An
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20164030

Dynamic Changes in Metabolite Accumulation and the Transcriptome during Leaf Growth and Development in Eucommia ulmoides
Cited by: 21
Author(s): Long Li, Minhao Liu, Kun Shi, Zhiying Yu, Ying Zhou, Ruishen Fan, Qianqian Shi
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-021-07972-9

Identification and validation of a five-lncRNA prognostic signature related to Glioma using bioinformatics analysis
Cited by: 8
Author(s): Chunyu Zhang, Haitao Liu, Pengfei Xu, Yinqiu Tan, Yang Xu, Long Wang, Baohui Liu, Daofeng Tian
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11070784

Differential Alternative Splicing Genes and Isoform Regulation Networks of Rapeseed (Brassica napus L.) Infected with Sclerotinia sclerotiorum
Cited by: 9
Author(s): Jinqi Ma, Wen Xu, Fei Xu, Lin Ai, Wei Sun, Huanhuan Jiang, Kun Lu, Jiana Li, Lijuan Wei
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.02845

Transcriptional Changes on Blight Fruiting Body of Flammulina velutipes Caused by Two New Bacterial Pathogens
Cited by: 8
Author(s): Qing Wang, Mengpei Guo, Ruiping Xu, Jingcheng Zhang, Yinbing Bian, Yang Xiao
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-60231-y

Shared transcriptional responses to con- and heterospecific behavioral antagonists in a wild songbird
Cited by: 10
Author(s): Matthew I. M. Louder, Michael Lafayette, Amber A. Louder, Floria M. K. Uy, Christopher N. Balakrishnan, Ken Yasukawa, Márk E. Hauber
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.6187

Comparative analyses of caste, sex, and developmental stage‐specific transcriptomes in two <i>Temnothorax</i> ants
Cited by: 7
Author(s): Claudia Gstöttl, Marah Stoldt, Evelien Jongepier, Erich Bornberg‐Bauer, Barbara Feldmeyer, Jürgen Heınze, Susanne Foitzik
Software Mentions: 2
Published: over 6 years ago

10.1002/cam4.3047

Identification of cancer stem cell characteristics in liver hepatocellular carcinoma by WGCNA analysis of transcriptome stemness index
Cited by: 69
Author(s): Kunhao Bai, Siyuan He, Lingling Shu, Weida Wang, Sensen Lin, Qian-Yi Zhang, Liang Li, Lei Cheng, Yong Dai
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-16-S3-S4

Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks
Cited by: 99
Author(s): Su-Ping Deng, Lin Zhu, De-Shuang Huang
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12864-019-6002-9

Comparative transcriptomics of early petal development across four diverse species of Aquilegia reveal few genes consistently associated with nectar spur development
Cited by: 18
Author(s): Evangeline S. Ballerini, Elena M. Kramer, Scott A. Hodges
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-021-08604-y

Seven key hub genes identified by gene co-expression network in cutaneous squamous cell carcinoma
Cited by: 13
Author(s): Huizhen Chen, Jiankang Yang, Wenjuan Wu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-6036-z

Comparative transcriptome and coexpression network analysis of carpel quantitative variation in Paeonia rockii
Cited by: 16
Author(s): Na Liu, Fangyun Cheng, Yuan Zhong, Xin Guo
Software Mentions: 2
Published: about 7 years ago

10.1186/s12885-019-5885-9

Epithelial-mesenchymal transition markers screened in a cell-based model and validated in lung adenocarcinoma
Cited by: 27
Author(s): Jing Song, Wenqing Wang, Yingyan Wang, Yongxin Qin, Yingzi Wang, Jian Zhou, Xuelian Wang, Yi Zhang, Qi Wang
Software Mentions: 2
Published: over 7 years ago

10.3390/genes11121457

Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations
Cited by: 3
Author(s): Shinji Ohsawa, Toshiaki Umemura, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13072-019-0310-9

Virtual methylome dissection facilitated by single-cell analyses
Cited by: 3
Author(s): Liduo Yin, Ye Luo, Xiguang Xu, Shiyu Wen, Xiaowei Wu, Xuemei Lu, Hehuang Xie
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2021.712843

Metagenomic Survey Reveals More Diverse and Abundant Antibiotic Resistance Genes in Municipal Wastewater Than Hospital Wastewater
Cited by: 6
Author(s): Dengwei Zhang, Ye Peng, Chak-Lun Chan, Hilda On, Hogan Kok-Fung Wai, Sandeep Singh Shekhawat, Akhilendra Bhushan Gupta, Alok Varshney, Rungtip Chuanchuen, Xudong Zhou, Yankai Xia, Suisha Liang, Keiji Fukuda, Krishna Mohan Medicherla, Hein Min Tun
Software Mentions: 2
Published: about 5 years ago

10.3390/genes12020180

Identification of Key Pathways and Genes Related to the Development of Hair Follicle Cycle in Cashmere Goats
Cited by: 19
Author(s): Jianfang Wang, Jie Sui, Chao Mao, Xiaorui Li, Xingyi Chen, Chengcheng Liang, Xiaohui Wang, Si-Hu Wang, Caixia Jia
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/9921012

Identification of Macrophage Polarization-Related Genes as Biomarkers of Chronic Obstructive Pulmonary Disease Based on Bioinformatics Analyses
Cited by: 5
Author(s): Yusheng Zhao, Meihua Li, Yumei Yang, Tao Wu, Qingyuan Huang, Qinghua Wu, Chaofeng Ren
Software Mentions: 2
Published: over 5 years ago

10.1186/s40001-020-00443-0

Screening and evaluation of key genes in contributing to pathogenesis of hepatic fibrosis based on microarray data
Cited by: 1
Author(s): Fuqiang Wu, Ning Lv, Ran Zhou, Albert Yuh-Jer Shen
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12030434

Full-Length Transcriptome Sequencing and Comparative Transcriptome Analysis to Evaluate Drought and Salt Stress in Iris lactea var. chinensis
Cited by: 14
Author(s): Lei Ni, Zhiquan Wang, Jinbo Guo, Xiaoxiao Pei, Liangqin Liu, Huogen Li, Yuan Huang, Chao Gu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.695445

Effects of Dietary Energy Levels on Rumen Fermentation, Gastrointestinal Tract Histology, and Bacterial Community Diversity in Fattening Male Hu Lambs
Cited by: 12
Author(s): Qiye Wang, Yutong Zeng, Xiangfang Zeng, Xin Wang, Yancan Wang, Chunpeng Dai, Jianzhong Li, Pengfei Huang, Jing Huang, Tarique Hussain, Mingzhi Zhu, Huansheng Yang
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/5587441

Identification of Molecular Characteristics and New Prognostic Targets for Thymoma by Multiomics Analysis
Cited by: 4
Author(s): Dazhong Liu, Pengfei Zhang, Jichun Zhao, Lei Yang, Wei Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-16-S7-S3

Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data
Cited by: 42
Author(s): Weirong Cui, Yulan Qian, Xiaoke Zhou, Yuxin Lin, Junfeng Jiang, Jiajia Chen, Zhongming Zhao, Bairong Shen
Software Mentions: 2
Published: over 11 years ago

10.1186/s12885-021-08434-y

Comprehensive analysis of suppressor of cytokine signaling proteins in human breast Cancer
Cited by: 9
Author(s): Mingyu Sun, Cheng Tang, Jun Li, Wenli Jiang, Haifeng Yu, Dong Fang, Chun Huang, Youlutuziayi Rixiati
Software Mentions: 2
Published: over 5 years ago

10.1111/eva.13054

Transcriptomic divergence between upland and lowland ecotypes contributes to rice adaptation to a drought‐prone agroecosystem
Cited by: 9
Author(s): Zhi Luo, Jie Xiong, Hui Xia, Xiaoyan Ma, Min Gao, Lei Wang, Guolan Liu, Yu Xing, Lijun Luo
Software Mentions: 2
Published: over 6 years ago

10.3892/or.2015.4038

A novel method to identify pathways associated with renal cell carcinoma based on a gene co-expression network
Cited by: 4
Author(s): Xiyun Ruan, Hongyun Liu, Bo Liu, Jie Chen, Shi‐Bao Zhang, Zeqiang Sun, Shuangqing Liu, Fahai Sun, Qingyong Liu
Software Mentions: 2
Published: over 11 years ago

10.1038/s12276-020-00528-0

Single-cell network biology for resolving cellular heterogeneity in human diseases
Cited by: 66
Author(s): Junha Cha, Insuk Lee
Software Mentions: 2
Published: almost 6 years ago

10.1155/2019/7859121

Gene Expression Pattern and Regulatory Network of α-Toxin Treatment in Bombyx mori
Cited by: 0
Author(s): Tieshan Feng, Ping Lin, Jiao Gong, Chen Dong, Xi Yang, Quan Zhang, Tingcai Cheng
Software Mentions: 2
Published: over 7 years ago

10.12688/f1000research.15271.1

Regulatory network characterization in development: challenges and opportunities
Cited by: 4
Author(s): Guangdun Peng, Jing‐Dong J. Han
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-51626-7

Gene and lncRNA co-expression network analysis reveals novel ceRNA network for triple-negative breast cancer
Cited by: 27
Author(s): Kehao Le, Hui Guo, Qiulei Zhang, Xiaojuan Huang, Ming Xu, Ziwei Huang, Pengfei Yi
Software Mentions: 2
Published: about 7 years ago

10.1186/s12870-018-1430-2

The key genes and pathways related to male sterility of eggplant revealed by comparative transcriptome analysis
Cited by: 28
Author(s): Yan Yang, Shengyou Bao, Xiaohui Zhou, Jun Li, Yun Zhuang
Software Mentions: 2
Published: about 8 years ago

10.1186/s40478-017-0424-x

A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis
Cited by: 54
Author(s): Johnathan Cooper‐Knock, Claire Green, Gabriel Altschuler, Wenbin Wei, Joanna J. Bury, Paul R. Heath, Matthew Wyles, Catherine Gelsthorpe, J. Robin Highley, Alejandro Lorente-Pons, Tim Beck, Kathryn Doyle, Karel Otero, Bryan J. Traynor, Janine Kirby, Pamela J. Shaw, Winston Hide
Software Mentions: 2
Published: over 9 years ago

10.3389/fgene.2021.709340

Molecular Characteristics of Choledochal Cysts in Children: Transcriptome Sequencing
Cited by: 3
Author(s): Yong Mei Lv, Xiaoyan Xie, Lihui Pu, Qi Wang, Siyu Pu, Chengbo Ai, Yi Liu, Jing Chen, Bo Xiang
Software Mentions: 2
Published: about 5 years ago

10.3390/genes12081242

Transcriptome Analysis of Post-Mortem Brain Tissue Reveals Up-Regulation of the Complement Cascade in a Subgroup of Schizophrenia Patients
Cited by: 8
Author(s): Eva Carlström, Adnan Niazi, Mitra Etemadikhah, Jonatan Halvardson, Stefan Enroth, Craig A. Stockmeier, Grażyna Rajkowska, Bo Nilsson, Lars Feuk
Software Mentions: 2
Published: about 5 years ago

10.1038/s41416-019-0477-7

Transcriptional and metabolic rewiring of colorectal cancer cells expressing the oncogenic KRASG13D mutation
Cited by: 32
Author(s): Theodosia Charitou, Sriganesh Srihari, Miriam A. Lynn, Mohamed Ali Jarboui, Erik Fasterius, Max Moldovan, Senji Shirasawa, Toshiyuki Tsunoda, Marius Ueffing, Jianling Xie, Xin Jin, Xuemin Wang, Christopher G. Proud, Karsten Boldt, Cristina Al‐Khalili Szigyarto, Walter Kölch, David J. Lynn
Software Mentions: 2
Published: over 7 years ago

10.1186/s12936-017-2029-z

Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques
Cited by: 20
Author(s): Yan Tang, Chester J. Joyner, Mónica Cabrera-Mora, Celia L. Saney, Stacey A. Lapp, Mustafa V. Nural, Suman B. Pakala, Jeremy D. DeBarry, Stephanie R. Soderberg, Jessica C. Kissinger, Tracey J. Lamb, Mary R. Galinski, Mark P. Styczynski
Software Mentions: 2
Published: about 9 years ago

10.1093/brain/awaa217

Dystonia genes functionally converge in specific neurons and share neurobiology with psychiatric disorders
Cited by: 45
Author(s): Niccolò E. Mencacci, Regina H Reynolds, Sonia García-Ruiz, Jana Vandrovcová, Paola Forabosco, Álvaro Sánchez‐Ferrer, Viola Volpato, Juan A. Botía, Karishma D’Sa, Paola Forabosco, Sebastian Guelfi, John Hardy, Jana Vandrovcová, Chris-Ann Mackenzie, Adaikalavan Ramasamy, Mina Ryten, Colin Smith, Daniah Trabzuni, Michael E. Weale, Alastair Noyce, Rauan Kaiyrzhanov, Ben Middlehurst, Demis A. Kia, Manuela Tan, Henry Houlden, Huw R. Morris, Hélène Plun‐Favreau, Peter Holmans, John Hardy, Daniah Trabzuni, José Brás, John P. Quinn, Kin Y. Mok, Kerri J. Kinghorn, Kimberley Billingsley, Nicholas W. Wood, Patrick A. Lewis, Rita Guerreiro, Ruth C. Lovering, Lea R’Bibo, Claudia Manzoni, Mie Rizig, Mina Ryten, Sebastian Guelfi, Valentina Escott‐Price, Viorica Chelban, Thomas Foltynie, Nigel Williams, Chingiz Shashakin, Nazira Zharkinbekova, Elena Zholdybayeva, Akbota Aitkulova, Kirsten Harvey, Michael E. Weale, Kailash P. Bhatia, Caleb Webber, John Hardy, Juan A. Botía, Mina Ryten
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-019-6261-5

Identification of key genes and regulators associated with carotenoid metabolism in apricot (Prunus armeniaca) fruit using weighted gene coexpression network analysis
Cited by: 25
Author(s): Lina Zhang, Qiuyun Zhang, Wenhui Li, Shikui Zhang, Wanpeng Xi
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-72986-5

Inoculation of Ensifer fredii strain LP2/20 immobilized in agar results in growth promotion and alteration of bacterial community structure of Chinese kale planted soil
Cited by: 15
Author(s): Neelawan Pongsilp, Pongrawee Nimnoi
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12091351

Identification of Key Transcription Factors Related to Bacterial Spot Resistance in Pepper through Regulatory Network Analyses
Cited by: 6
Author(s): Qingquan Zhu, Shenghua Gao, Wenli Zhang
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12964

LMTK3 promotes tumorigenesis in bladder cancer via the ERK/MAPK pathway
Cited by: 15
Author(s): Tao Jiang, Xia Lu, Feiya Yang, Mingshuai Wang, Hua Yang, Nianzeng Xing
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-018-4979-0

Comparative transcriptomics reveals suppressed expression of genes related to auxin and the cell cycle contributes to the resistance of cucumber against Meloidogyne incognita
Cited by: 21
Author(s): Xing Wang, Chunyan Cheng, Kaijing Zhang, Zhen Tian, Jian Xu, Shuqiong Yang, Qunfeng Lou, Ji Li
Software Mentions: 2
Published: about 8 years ago

10.1002/fsn3.2283

Chain length‐dependent inulin alleviates diet‐induced obesity and metabolic disorders in mice
Cited by: 9
Author(s): Liangkui Li, Lu Zhang, Linkang Zhou, Meijun Jin, Li Xu
Software Mentions: 2
Published: over 5 years ago

10.1093/bib/bbt034

Supervised, semi-supervised and unsupervised inference of gene regulatory networks
Cited by: 129
Author(s): Stefan Maetschke, Piyush B. Madhamshettiwar, Melissa J. Davis, Mark A. Ragan
Software Mentions: 2
Published: over 13 years ago

10.3390/ijms20194838

Transcriptome Sequencing and Metabolome Analysis Reveal Genes Involved in Pigmentation of Green-Colored Cotton Fibers
Cited by: 32
Author(s): Jie Sun, Xingjiang Xiong, Qian‐Hao Zhu, Yanjun Li
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-019-5433-7

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis
Cited by: 0
Author(s): Michael Fraser, Yuqi Long, Guoli Ji, Yangfeng Su, Pengchao Ye, Hongjuan Fu, Xiaohui Wu
Software Mentions: 2
Published: almost 8 years ago

10.1155/2021/5511507

The Identification of Childhood Asthma Progression-Related lncRNAs and mRNAs Suitable as Biomarkers Using Weighted Gene Coexpression Network Analysis
Cited by: 4
Author(s): Min Hao, Jinling Zan
Software Mentions: 2
Published: over 5 years ago

10.3389/fnagi.2018.00153

Integrative Analysis of Hippocampus Gene Expression Profiles Identifies Network Alterations in Aging and Alzheimer’s Disease
Cited by: 53
Author(s): Vinay Lanke, S.T.R. Moolamalla, Dipanjan Roy, P. Vinod
Software Mentions: 2
Published: over 8 years ago

10.3389/fnagi.2020.605961

Co-expression Network Analysis Reveals Novel Genes Underlying Alzheimer’s Disease Pathogenesis
Cited by: 16
Author(s): Ruiting Hu, Qian Yu, Shao-Dan Zhou, Yuqing Yin, Rui-guang Hu, Hai-peng Lu, Bang-li Hu
Software Mentions: 2
Published: almost 6 years ago

10.1002/cam4.4132

Identification of a competing endogenous RNA axis “SVIL‐AS1/miR‐103a/ICE1” associated with chemoresistance in lung adenocarcinoma by comprehensive bioinformatics analysis
Cited by: 5
Author(s): Lili Guo, Ling Ding, Jiaguang Tang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-4871-y

Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits
Cited by: 33
Author(s): Aline Silva Mello Cesar, Luciana Correia de Almeida Regitano, James M. Reecy, Mirele Daiana Poleti, P. S. N. Oliveira, Guilherme Bueno de Oliveira, Gabriel Costa Monteiro Moreira, Maurício A. Mudadu, P. C. Tizioto, James E. Koltes, Eric R. Fritz-Waters, Luke M. Kramer, Dorian J. Garrick, Hamid Beiki, Ludwig Geistlinger, Gérson Barreto Mourão, Adhemar Zerlotini
Software Mentions: 2
Published: over 8 years ago

10.3389/fendo.2020.00510

Identification of a Prognostic 3-Gene Risk Prediction Model for Thyroid Cancer
Cited by: 8
Author(s): Haiping Zhao, Shiwei Zhang, Shijie Shao, Haixing Fang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-016-3188-y

Network analysis of psoriasis reveals biological pathways and roles for coding and long non-coding RNAs
Cited by: 63
Author(s): Richard Ahn, Rashmi Gupta, Kevin Lai, Nitin Chopra, Sarah T. Arron, Wilson Liao
Software Mentions: 2
Published: about 10 years ago

10.3389/frai.2021.674370

Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissues
Cited by: 6
Author(s): Vy Tran, Robert Kim, Mikhail Maertens, Thomas Hartung, Alexandra Maertens
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.687760

m6A-Related lncRNAs Are Potential Biomarkers for the Prognosis of Metastatic Skin Cutaneous Melanoma
Cited by: 16
Author(s): Suyang Huang, Shanshan Lyu, Zhe Gao, Weifeng Zha, Ping Wang, Yuxi Shan, Jianzhong He, Yang Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-015-2057-4

The WRKY transcription factor family and senescence in switchgrass
Cited by: 51
Author(s): Charles I Rinerson, Erin D. Scully, Nathan A. Palmer, Teresa Donze-Reiner, Roel C. Rabara, Prateek Tripathi, Qi Shen, Scott E. Sattler, Jai S. Rohila, Gautam Sarath, Paul J. Rushton
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13046-019-1318-5

A positive feedback between IDO1 metabolite and COL12A1 via MAPK pathway to promote gastric cancer metastasis
Cited by: 75
Author(s): Zhen Xiang, Jun Li, Shuzheng Song, Jiexuan Wang, Wei Cai, Wenjun Hu, Jun Ji, Zhenggang Zhu, Lu Zang, Ranlin Yan, Yingyan Yu
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-020-06854-x

Maternal dietary resistant starch does not improve piglet’s gut and liver metabolism when challenged with a high fat diet
Cited by: 2
Author(s): Martine Schroyen, Julie Leblois, Julie Uerlings, Bing Li, Ester Arévalo Sureda, Sébastien Massart, José Wavreille, Jérôme Bindelle, Nadia Everaert
Software Mentions: 2
Published: over 6 years ago

10.3389/fbioe.2014.00048

Protein Network Signatures Associated with Exogenous Biofuels Treatments in Cyanobacterium Synechocystis sp. PCC 6803
Cited by: 11
Author(s): Guangsheng Pei, Lei Chen, Jiangxin Wang, Jianjun Qiao, Weiwen Zhang
Software Mentions: 2
Published: almost 12 years ago

10.3389/fbioe.2020.00729

OASL as a Diagnostic Marker for Influenza Infection Revealed by Integrative Bioinformatics Analysis With XGBoost
Cited by: 7
Author(s): Yang Li, Hongjie Liu, Quan Xu, Rui Wu, Yi Zhang, Naizhe Li, Xiaozhou He, Mengjie Yang, Mifang Liang, Xuejun Ma
Software Mentions: 2
Published: over 6 years ago

10.3389/fbioe.2020.00031

Transcriptomic Analyses for Identification and Prioritization of Genes Associated With Alzheimer’s Disease in Humans
Cited by: 17
Author(s): Yuchen Shi, Hui Liu, Changbo Yang, Kang Xu, Yangyang Cai, Zhao Wang, Zheng Zhao, Tingting Shao, Yixue Li
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-15-756

Transcriptional profiles of bovine in vivo pre-implantation development
Cited by: 134
Author(s): Zongliang Jiang, Jianfang Sun, Hong Dai, Oscar Junhong Luo, Xinbao Zheng, Craig Obergfell, Yong Tang, Jinbo Bi, Rachel J. O’Neill, Yijun Ruan, Jingbo Chen, X. Cindy Tian
Software Mentions: 2
Published: about 12 years ago

10.3389/fbioe.2018.00151

Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in Trichoderma reesei RUT-30
Cited by: 19
Author(s): Gustavo Pagotto Borin, Marcelo Falsarella Carazzolle, Renato Augusto Corrêa dos Santos, Diego Mauricio Riaño‐Pachón, Juliana Velasco de Castro Oliveira
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.22769

Identify clear cell renal cell carcinoma related genes by gene network
Cited by: 2
Author(s): Fangrong Yan, Yue Wang, Chunhui Liu, Hang Zhao, Liya Zhang, Xiaofan Lu, Chen Chen, Yaoyan Wang, Tao Lü, Fei Wang
Software Mentions: 2
Published: almost 9 years ago

10.1155/2019/5742608

Identification of Candidate Genes and MicroRNAs for Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis
Cited by: 18
Author(s): Yan Li, Xiao Nan He, Chao Li, Ling Gong, Min Liu
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.17098

Identification of a RNA-Seq based prognostic signature with five lncRNAs for lung squamous cell carcinoma
Cited by: 46
Author(s): Rongjiang Tang, Wenjie Chen, Rong‐Quan He, Jiang‐Hui Zeng, Liang Liang, Shikang Li, Jie Ma, Dan Luo, Gang Chen
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms22105291

Genome-Wide Analysis of nsLTP Gene Family and Identification of SiLTPs Contributing to High Oil Accumulation in Sesame (Sesamum indicum L.)
Cited by: 17
Author(s): Shengnan Song, Jun You, Lisong Shi, Sheng Chen, Wangyi Zhou, Senouwa Segla Koffi Dossou, Komivi Dossa, Linhai Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fcvm.2021.647953

The Integrative Analysis of Competitive Endogenous RNA Regulatory Networks in Coronary Artery Disease
Cited by: 3
Author(s): Yuyao Ji, Tao Yan, Shijie Zhu, Runda Wu, Miao Zhu, Yangyang Zhang, Changfa Guo, Kang Yao
Software Mentions: 2
Published: about 5 years ago

10.3389/fcvm.2020.631775

Integrative Identification of Hub Genes Associated With Immune Cells in Atrial Fibrillation Using Weighted Gene Correlation Network Analysis
Cited by: 9
Author(s): Tao Yan, Shijie Zhu, Miao Zhu, Chunsheng Wang, Changfa Guo
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.202303

Knockdown of CENPF inhibits the progression of lung adenocarcinoma mediated by ERβ2/5 pathway
Cited by: 8
Author(s): Huiping Tang, Yuquan Bai, Lei Xiong, Yanhong Wei, Li Shen, Weidong Hu, Meifeng Xu, Xuefeng Zhou, Guoqing Pan, Zhang Li, Minghua Zhu, Zheng Tang, Zhaohui Yang, Zhijie Xiao, Yi Cai, Michael Lanuti, Jinping Zhao
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-021-07709-9

Dual species dynamic transcripts reveal the interaction mechanisms between Chrysanthemum morifolium and Alternaria alternata
Cited by: 5
Author(s): Lina Liu, Fadi Chen, Sumei Chen, Weimin Fang, Ye Liu, Zhiyong Guan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-021-01118-w

An increase of phosphatidylcholines in follicular fluid implies attenuation of embryo quality on day 3 post-fertilization
Cited by: 6
Author(s): Ju Wang, Wei Zheng, Shuoping Zhang, Kunlun Yan, Miao Jin, Huiling Hu, Zhen Ma, Fei Gong, Guangxiu Lu, Yan Ren, Liang Lin, Ge Lin, Liang Hu, Siqi Liu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-021-07537-x

Comparative transcriptomic analysis of the different developmental stages of ovary in red swamp crayfish Procambarus clarkii
Cited by: 5
Author(s): Yang Zhong, Wei Zhao, Tang ZhangSheng, Liming Huang, Xiao-feng Zhu, Xiang Liang, Aifen Yan, Lu ZhiFa, Yanling Yu, Dongsheng Tang, Dapeng Wang, Zhuan-Ling Lu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20205120

Using Transcriptome Analysis to Screen for Key Genes and Pathways Related to Cytoplasmic Male Sterility in Cotton (Gossypium hirsutum L.)
Cited by: 14
Author(s): Yuqing Li, Tengfei Qin, Chunyan Wei, Jialiang Sun, Tingting Dong, Ran Zhou, Quanjia Chen, Qinglian Wang
Software Mentions: 2
Published: about 7 years ago