cran: WGCNA | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0118466

Ancestry Dependent DNA Methylation and Influence of Maternal Nutrition
Cited by: 40
Author(s): Khyobeni Mozhui, Alicia K. Smith, Frances A. Tylavsky
Software Mentions: 2
Published: over 11 years ago

Repetitive in vivo manual loading of the spine elicits cellular responses in porcine annuli fibrosi
Cited by: 1
Author(s): John R. Matyas, Claudia Klein, Dragana Ponjevic, Neil A. Duncan, Gregory N. Kawchuk
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.670971

Identification of Inflammation-Related Biomarker Lp-PLA2 for Patients With COPD by Comprehensive Analysis
Cited by: 21
Author(s): Mingming Deng, Yan Yin, Qin Zhang, Xiaoming Zhou, Gang Hou
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.609900

Predicting Non-Alcoholic Fatty Liver Disease Progression and Immune Deregulations by Specific Gene Expression Patterns
Cited by: 16
Author(s): Fanhong Zeng, Yue Zhang, Xu Han, Min Zeng, Yi Gao, Jun Weng
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0243507

Using WGCNA (weighted gene co-expression network analysis) to identify the hub genes of skin hair follicle development in fetus stage of Inner Mongolia cashmere goat
Cited by: 10
Author(s): Zhihong Wu, Erhan Hai, Zhengyang Di, Rong Ma, Fangzheng Shang, Yu Wang, Min Wang, Lili Liang, Youjun Rong, Jianfeng Pan, Wenbin Wu, Rui Su, Zhiying Wang, Ruijun Wang, Yanjun Zhang, Jinquan Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.727104

The Role of graRS in Regulating Virulence and Antimicrobial Resistance in Methicillin-Resistant Staphylococcus aureus
Cited by: 4
Author(s): Le Chen, Zihui Wang, Tao Xu, Hongfei Ge, Fang Zhou, Xiaoyi Zhu, Xianhui Li, Di Qu, Cheng Zheng, Yang Wu, Keqing Zhao
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.02613

Different Selectivity in Fungal Communities Between Manure and Mineral Fertilizers: A Study in an Alkaline Soil After 30 Years Fertilization
Cited by: 20
Author(s): Ying Wang, Hongfei Ji, Yaxian Hu, Rui Wang, Junpeng Rui, Shengli Guo
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2020.554051

Fungal Composition and Diversity of the Tobacco Leaf Phyllosphere During Curing of Leaves
Cited by: 28
Author(s): Qianli Chen, Lin Cai, Han-Cheng Wang, Lun Cai, Paul H. Goodwin, Ma Jun, Feng Wang, Li Zhong
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.02123

Dramatic Remodeling of the Gut Microbiome Around Parturition and Its Relationship With Host Serum Metabolic Changes in Sows
Cited by: 20
Author(s): Xiaowan Huang, Jun Gao, Yuanzhang Zhao, Maozhang He, Shanlin Ke, Jinyuan Wu, Yunyan Zhou, Hao Fu, Hui Yang, Congying Chen, Lusheng Huang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0170458

Transcriptome-wide co-expression analysis identifies LRRC2 as a novel mediator of mitochondrial and cardiac function
Cited by: 10
Author(s): Chris McDermott-Roe, Marion Leleu, Glenn C. Rowe, Oleg Palygin, John D. Bukowy, Judy Kuo, Monika Rech, Steffie Hermans-Beijnsberger, S. Schaefer, Eleonora Adami, Esther E. Creemers, Matthias Heinig, Blanche Schroen, Zoltàn Arany, Enrico Petretto, Aron M. Geurts
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.02365

Temporal Dynamics of the Soil Metabolome and Microbiome During Simulated Anaerobic Soil Disinfestation
Cited by: 44
Author(s): Shashika S. Hewavitharana, Emmi Klarer, Andrew J. Reed, Rachel Leisso, Brenton C. Poirier, Loren Honaas, David R. Rudell, Mark Mazzola
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21051707

Co-Expression Network Analysis of Spleen Transcriptome in Rock Bream (Oplegnathus fasciatus) Naturally Infected with Rock Bream Iridovirus (RBIV)
Cited by: 15
Author(s): Ahran Kim, Dahye Yoon, Yunjin Lim, Heyong Jin Roh, Suhkmann Kim, Chan-Il Park, Heui‐Soo Kim, Hee‐Jae Cha, You‐Jin Jeon, Do-Hyung Kim
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21082908

Precision Medicine in Childhood Asthma: Omic Studies of Treatment Response
Cited by: 7
Author(s): Javier Pérez-García, Esther Herrera‐Luis, Fabián Lorenzo-Díaz, Mario González, Olaia Sardón, Jesús Villar, Maria Pino‐Yanes
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.581313

The Mosaic Architecture of NRPS-PKS in the Arbuscular Mycorrhizal Fungus Gigaspora margarita Shows a Domain With Bacterial Signature
Cited by: 7
Author(s): Francesco Venice, Alessandro Desirò, Gladstone Alves da Silva, Alessandra Salvioli, Paola Bonfante
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.00520

Weighted Gene Co-expression Network Analysis Identifies Critical Genes for the Production of Cellulase and Xylanase in Penicillium oxalicum
Cited by: 20
Author(s): Chengxi Li, Shuai Zhao, Xi Luo, Jia‐Xun Feng
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.601864

Episodic Decrease in Temperature Increases mcy Gene Transcription and Cellular Microcystin in Continuous Cultures of Microcystis aeruginosa PCC 7806
Cited by: 20
Author(s): Robbie M. Martin, Mohammad Moniruzzaman, Gwendolyn F. Stark, Eric R. Gann, Dominique S. Derminio, Bofan Wei, Ferdi L. Hellweger, Ameet J. Pinto, Gregory L. Boyer, Steven W. Wilhelm
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2021.656649

Whitefly Network Analysis Reveals Gene Modules Involved in Host Plant Selection, Development and Evolution
Cited by: 6
Author(s): Jiahui Tian, Hao Zhan, Youssef Dewer, Biyun Zhang, Cheng Qu, Chen Luo, Fengqi Li, Shiyong Yang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0253012

Investigation of lncRNA-mRNA co-expression network in ETV6-RUNX1-positive pediatric B-cell acute lymphoblastic leukemia
Cited by: 1
Author(s): Wei-Juan Yu, Weihua Wang, Xiumei Yu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21093288

Comparative Transcriptome Analysis Combining SMRT- and Illumina-Based RNA-Seq Identifies Potential Candidate Genes Involved in Betalain Biosynthesis in Pitaya Fruit
Cited by: 22
Author(s): Yanyan Wu, Juan Xu, Xuelei Han, Guo Qiao, Kun Yang, Wen Zhuang, Xiaopeng Wen
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21124316

Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity
Cited by: 16
Author(s): Lijuan Zhao, Jingjing Cui, Yuanyuan Cai, Songnan Yang, Juge Liu, Wei Wang, Junyi Gai, Zhubing Hu, Yan Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fphys.2017.00947

Identification of Biomarkers Correlated with the TNM Staging and Overall Survival of Patients with Bladder Cancer
Cited by: 78
Author(s): Sheng Li, Xiaoping Li, Tongzu Liu, Xiangyu Meng, Xiaohong Yin, Cheng Fang, Di Huang, Yue Cao, Hong Weng, Xian‐Tao Zeng, Xinghuan Wang
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphys.2018.00215

Mechanistic Role of Reactive Oxygen Species and Therapeutic Potential of Antioxidants in Denervation- or Fasting-Induced Skeletal Muscle Atrophy
Cited by: 62
Author(s): Jiaying Qiu, Qian Fang, Tongtong Xu, Changyue Wu, Lai Xu, Lingbin Wang, Xiaoming Yang, Shu Yu, Qi Zhang, Fei Ding, Hualin Sun
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2019.01081

Identification of Hub Genes and Key Pathways Associated With Bipolar Disorder Based on Weighted Gene Co-expression Network Analysis
Cited by: 70
Author(s): Yang Liu, Hao Gu, Jie Zhu, Yu‐Ming Niu, Zhang Chao, Guangling Guo
Software Mentions: 2
Published: about 7 years ago

10.3389/fphys.2016.00615

Network Analysis-Based Approach for Exploring the Potential Diagnostic Biomarkers of Acute Myocardial Infarction
Cited by: 33
Author(s): Jiaqi Chen, Ling Yu, Siwei Zhang, Xia Chen
Software Mentions: 2
Published: almost 10 years ago

10.3389/fphys.2021.682441

FOSL2 Is Involved in the Regulation of Glycogen Content in Chicken Breast Muscle Tissue
Cited by: 2
Author(s): Xiaojing Liu, Lu Liu, Jie Wang, Huanxian Cui, Guiping Zhao, Jie Wen
Software Mentions: 2
Published: about 5 years ago

10.3389/fphys.2017.01049

An Integrated Analysis of miRNAs and Methylated Genes Encoding mRNAs and lncRNAs in Sheep Breeds with Different Fecundity
Cited by: 25
Author(s): Xiangyang Miao, Qingmiao Luo, Haiping Zhao, Xiaoqiong Qin
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2017.01010

Weighted Gene Co-expression Network Analysis Identifies FKBP11 as a Key Regulator in Acute Aortic Dissection through a NF-kB Dependent Pathway
Cited by: 31
Author(s): Tao Wang, Xingwei He, Xintian Liu, Yujian Liu, Wenjun Zhang, Qiang Huang, Wanjun Liu, Luyang Xiong, Rong Tan, Hongjie Wang, Hesong Zeng
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphys.2018.00676

Stat5b Regulates Sexually Dimorphic Gene Expression in Zebrafish Liver
Cited by: 11
Author(s): Peipei Huang, Shuting Xiong, Jingliang Kang, Jie Mei, Jian‐Fang Gui
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2021.624097

Robust Physiological Metrics From Sparsely Sampled Networks
Cited by: 7
Author(s): Alan A. Cohen, Sébastien Leblanc, Xavier Roucou
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2016.00486

Integrated Systems Biology Analysis of Transcriptomes Reveals Candidate Genes for Acidity Control in Developing Fruits of Sweet Orange (Citrus sinensis L. Osbeck)
Cited by: 25
Author(s): Dingquan Huang, Yihong Zhao, Minghao Cao, Liang Qiao, Zhi‐Liang Zheng
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms21145095

Transcriptomic Profiling of Young Cotyledons Response to Chilling Stress in Two Contrasting Cotton (Gossypium hirsutum L.) Genotypes at the Seedling Stage
Cited by: 21
Author(s): Gongmin Cheng, Longyan Zhang, Hantao Wang, Jianhua Lü, Hengling Wei, Shuxun Yu
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2017.01117

Neofusicoccum parvum Colonization of the Grapevine Woody Stem Triggers Asynchronous Host Responses at the Site of Infection and in the Leaves
Cited by: 33
Author(s): Mélanie Massonnet, Rosa Figueroa‐Balderas, Erin R.-A. Galarneau, Shiho Miki, Daniel P. Lawrence, Qiang Sun, Christopher M. Wallis, Kendra Baumgartner, Dario Cantu
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2016.00490

Genome-Wide Identification and Function Analyses of Heat Shock Transcription Factors in Potato
Cited by: 50
Author(s): Ruimin Tang, Wenjiao Zhu, Xiao‐Yan Song, Xingzhong Lin, Jinghui Cai, Man Wang, Qing Yang
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2017.00080

Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Cited by: 13
Author(s): Mei Yang, Liming Zhu, Ling Li, Juanjuan Li, Liming Xu, Jia‐Xun Feng, Yanling Liu
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2020.617020

Differentiation of Tracheary Elements in Sugarcane Suspension Cells Involves Changes in Secondary Wall Deposition and Extensive Transcriptional Reprogramming
Cited by: 7
Author(s): Marcella Siqueira Simões, Sávio Siqueira Ferreira, Adriana Grandis, Jorge Rencoret, Staffan Persson, Eny Iochevet Segal Floh, André Ferraz, José C. del Rı́o, Marcos Silveira Buckeridge, Igor Cesarino
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.685136

Unraveling the Regulatory Mechanism of Color Diversity in Camellia japonica Petals by Integrative Transcriptome and Metabolome Analysis
Cited by: 44
Author(s): Mingyue Fu, Yongsheng Xu, Jiarui Zheng, Ling Wang, Xiaoyan Yang, Yi Fang Tu, Jiabao Ye, Weiwei Zhang, Yongling Liao, Shuiyuan Cheng, Feng Xu
Software Mentions: 2
Published: over 5 years ago

10.1002/mgg3.515

Gene coexpression network analysis identified potential biomarkers in gestational diabetes mellitus progression
Cited by: 11
Author(s): Xuefei Zhao, Wen Li
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2021.650252

Transcriptome and Coexpression Network Analyses Reveal Hub Genes in Chinese Cabbage (Brassica rapa L. ssp. pekinensis) During Different Stages of Plasmodiophora brassicae Infection
Cited by: 16
Author(s): Yuxiang Yuan, Liu-yue QIN, Henan Su, Yang Shu, Xiaochun Wei, Zhiyong Wang, Yanyan Zhao, Lin Li, Honglei Liu, Bin Tian, Xiaowei Zhang
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.00650

Genome-Wide Analysis of Basic Helix-Loop-Helix Transcription Factors to Elucidate Candidate Genes Related to Fruit Ripening and Stress in Banana (Musa acuminata L. AAA Group, cv. Cavendish)
Cited by: 15
Author(s): Zhuo Wang, Caihong Jia, Jingyi Wang, Hongxia Miao, Juhua Liu, Cui Chen, Haiyuan Yang, Biao Xu, Zhiqiang Jin
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2020.00620

Insights of Molecular Mechanism of Xylem Development in Five Black Poplar Cultivars
Cited by: 12
Author(s): Lei Zhang, Liu BoBin, Jin Zhang, Jianjun Hu
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.661635

Genetic Effects and Expression Patterns of the Nitrate Transporter (NRT) Gene Family in Populus tomentosa
Cited by: 14
Author(s): Леи Жао, Panfei Chen, Peng Liu, Yuepeng Song, Deqiang Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00692

Exploring DNA Variant Segregation Types Enables Mapping Loci for Recessive Phenotypic Suppression of Columnar Growth in Apple
Cited by: 4
Author(s): Laura Dougherty, Tuanhui Bai, Susan K. Brown, Kenong Xu
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.664733

Integrated Gene Co-expression Analysis and Metabolites Profiling Highlight the Important Role of ZmHIR3 in Maize Resistance to Gibberella Stalk Rot
Cited by: 7
Author(s): Yali Sun, Xinsen Ruan, Qing Wang, Yu Zhou, Fang Wang, Liang Ma, Zhenhua Wang, Xiaoge Gao
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9000

Identification of key miRNAs in the progression of hepatocellular carcinoma using an integrated bioinformatics approach
Cited by: 3
Author(s): Qi Zheng, Xiaoyong Wei, Jun Rao, Cuncai Zhou
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.00495

Identification of MicroRNA Targets of Capsicum spp. Using MiRTrans—a Trans-Omics Approach
Cited by: 3
Author(s): Lu Zhang, Cheng Qin, Junpu Mei, Jiayao Chen, Zhiming Wu, Xiao‐Dong Luo, Jimin Cheng, Xiangqun Tang, Kailin Hu, Shuai Cheng Li
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.9633

Identification of 10 Hub genes related to the progression of colorectal cancer by co-expression analysis
Cited by: 7
Author(s): Jie Meng, Rui Su, Yun Liao, Yanyan Li, Ling Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2020.00524

Centralization Within Sub-Experiments Enhances the Biological Relevance of Gene Co-expression Networks: A Plant Mitochondrial Case Study
Cited by: 1
Author(s): Simon R. Law, Therese G. Kellgren, Rafael Björk, Patrik Rydén, Olivier Keech
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.730620

Metabolic and Transcriptomic Profiling of Lilium Leaves Infected With Botrytis elliptica Reveals Different Stages of Plant Defense Mechanisms
Cited by: 5
Author(s): Nan Chai, Jie Xu, Rumeng Zuo, Zhengqiong Sun, Yulin Cheng, Shunzhao Sui, Mingyang Li, Daofeng Liu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2015.00118

Transcriptional profiling of Petunia seedlings reveals candidate regulators of the cold stress response
Cited by: 10
Author(s): Bei Li, Luyun Ning, Junwei Zhang, Manzhu Bao, Wei Zhang
Software Mentions: 2
Published: over 11 years ago

10.3389/fpsyt.2021.553305

Weighted Gene Coexpression Network Analysis Reveals Essential Genes and Pathways in Bipolar Disorder
Cited by: 11
Author(s): Zhenqing Zhang, Weiwei Wu, Jindong Chen, Guangyin Zhang, Jinyu Lin, Yankun Wu, Yu Zhang, Yun‐Ai Su, Jitao Li, Tianmei Si
Software Mentions: 2
Published: over 5 years ago

10.3389/fnsys.2017.00075

Gene Network Construction from Microarray Data Identifies a Key Network Module and Several Candidate Hub Genes in Age-Associated Spatial Learning Impairment
Cited by: 7
Author(s): Raihan K. Uddin, Shiva M. Singh
Software Mentions: 2
Published: almost 9 years ago

10.3389/fvets.2021.688684

Construction and Analysis of Coexpression Network to Understand Biological Responses in Chickens Infected by Eimeria tenella
Cited by: 3
Author(s): Baohong Liu, Xiu-Wen Ma, Jianping Cai
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21228730

Network Analysis of Gut Microbiome and Metabolome to Discover Microbiota-Linked Biomarkers in Patients Affected by Non-Small Cell Lung Cancer
Cited by: 60
Author(s): Pamela Vernocchi, Tommaso Gili, Federica Conte, Federica Del Chierico, Giorgia Conta, Alfredo Miccheli, Andrea Botticelli, Paola Paci, Guido Caldarelli, Marianna Nuti, Paolo Marchetti, Lorenza Putignani
Software Mentions: 2
Published: almost 6 years ago

10.1534/g3.118.200870

The Transcriptional Regulator Hbx1 Affects the Expression of Thousands of Genes in the Aflatoxin-Producing FungusAspergillus flavus
Cited by: 16
Author(s): Jeffrey W. Cary, Sarah Entwistle, Timothy Satterlee, Brian M. Mack, Matthew K. Gilbert, Perng‐Kuang Chang, Leslie L. Scharfenstein, Yanbin Yin, Ana M. Calvo
Software Mentions: 2
Published: over 7 years ago

10.1534/g3.118.200647

Domestication and Temperature Modulate Gene Expression Signatures and Growth in the Australasian Snapper Chrysophrys auratus
Cited by: 20
Author(s): Maren Wellenreuther, Jérémy Le Luyer, Denham G. Cook, Peter A. Ritchie, Louis Bernatchez
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20246252

The Major Factors Causing the Microspore Abortion of Genic Male Sterile Mutant NWMS1 in Wheat (Triticum aestivum L.)
Cited by: 17
Author(s): Junchang Li, Jing Zhang, Huijuan Li, Hao Niu, Qiaoqiao Xu, Zhixin Jiao, Junhang An, Yumei Jiang, Qiaoyun Li, Jishan Niu
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41438-019-0227-2

The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution
Cited by: 38
Author(s): Qingsen Zhu, Yang Xu, Yong Yang, Changfei Guan, Qiuyun Zhang, Jingwen Huang, Don Grierson, Kunsong Chen, Bangchu Gong, Yin X
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41438-019-0212-9

Genome-wide transcriptome analysis reveals molecular pathways involved in leafy head formation of Chinese cabbage (Brassica rapa)
Cited by: 10
Author(s): Xiaoxue Sun, Ram Kumar Basnet, Zhichun Yan, Johan Bucher, Chengcheng Cai, Jianjun Zhao, Guusje Bonnema
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41438-021-00627-7

Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway
Cited by: 46
Author(s): Honglei Li, Lin Wu, Zhaoming Dong, Yi Jiang, Sanjie Jiang, Haitao Xing, Qiang Li, Guocheng Liu, Shuming Tian, Zhangyan Wu, Bin Wu, Zhexin Li, Ping Zhao, Yan Zhang, Jianmin Tang, Jiabao Xu, Ke Huang, Xia Liu, Wenlin Zhang, Qinhong Liao, Yun Ren, Xianjin Huang, Qingzhi Li, Chengyong Li, Yi Wang, Baskaran Xavier-Ravi, Honghai Li, Yang Liu, Tao Wan, Qinhu Liu, Yong Zou, Jianbo Jian, Qingyou Xia, Yiqing Liu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-020-00421-x

Integrated transcriptome and proteome analysis provides insight into chilling-induced dormancy breaking in Chimonanthus praecox
Cited by: 22
Author(s): Zhineng Li, Ning Liu, Wei Zhang, C. F. Wu, Yunbin Jiang, Jing Ma, Mingyang Li, Shunzhao Sui
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41438-020-00381-2

Coexpression network analysis reveals an MYB transcriptional activator involved in capsaicinoid biosynthesis in hot peppers
Cited by: 43
Author(s): Binmei Sun, Xin Zhou, Changming Chen, Chengjie Chen, Kunhao Chen, Muxi Chen, Shaoqun Liu, Guoju Chen, Bihao Cao, Fanrong Cao, Jing Liu, Zhiwen Zhu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41438-021-00635-7

The grapevine (Vitis vinifera L.) floral transcriptome in Pinot noir variety: identification of tissue-related gene networks and whorl-specific markers in pre- and post-anthesis phases
Cited by: 4
Author(s): Alessandro Vannozzi, Fabio Palumbo, Gabriele Magon, Margherita Lucchin, Gianni Barcaccia
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-019-0128-4

Comparative transcriptome analysis uncovers the regulatory functions of long noncoding RNAs in fruit development and color changes of Fragaria pentaphylla
Cited by: 25
Author(s): Lijun Bai, Qing Chen, Long Jiang, Yuanxiu Lin, Yuntian Ye, Peng Liu, Xiaorong Wang, Haoru Tang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41438-019-0215-6

The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis
Cited by: 84
Author(s): Feng-chao Jiang, Junhuan Zhang, Sen Wang, Yang Li, Yingfeng Luo, Shenghan Gao, Meiling Zhang, Shizhou Wu, Songnian Hu, Hui Sun, Yuzhu Wang
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41438-021-00599-8

Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger
Cited by: 27
Author(s): Shiping Cheng, Kai‐Hua Jia, Hui Liu, Rengang Zhang, Zhichao Li, Shanshan Zhou, Tian-Le Shi, Ai-Chu Ma, Congwen Yu, Chan Gao, Guanglei Cao, Zhao Wang, Shuai Nie, Jing‐Fang Guo, Si-Qian Jiao, Xue Tian, Xuemei Yan, Yu-Tao Bao, Quanzheng Yun, Xinzhu Wang, Ilga Porth, Yousry A. El‐Kassaby, Xiaoru Wang, Zhen Li, Yves Van de Peer, Jian‐Feng Mao
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-021-00610-2

Morphological, phenological, and transcriptional analyses provide insight into the diverse flowering traits of a mutant of the relic woody plant Liriodendron chinense
Cited by: 13
Author(s): Shanlin Yu, Zhaodong Hao, Peng Ye, Siqin Liu, Lingfeng Hu, Yongbao Shen, Jisen Shi, Jinhui Chen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-021-00537-8

Comparative transcriptomic analysis highlights contrasting levels of resistance of Vitis vinifera and Vitis amurensis to Botrytis cinerea
Cited by: 10
Author(s): Ran Wan, Chunfang Guo, Xiaoqing Hou, Yanxun Zhu, Min Gao, Xiaoyan Hu, Songlin Zhang, Chen Jiao, Rongrong Guo, Zhi Li, Xiping Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-021-00513-2

Leaf nutrient content and transcriptomic analyses of endive (Cichorium endivia) stressed by downpour-induced waterlog reveal a gene network regulating kestose and inulin contents
Cited by: 7
Author(s): Giulio Testone, Anatoly P. Sobolev, Giovanni Mele, Chiara Nicolodi, Maria Gonnella, Giuseppe Arnesi, Tiziano Biancari, Donato Giannino
Software Mentions: 2
Published: over 5 years ago

10.1002/iid3.373

Five immune‐gene‐signatures participate in the development and pathogenesis of Kawasaki disease
Cited by: 11
Author(s): Han Nie, Shizhi Wang, Qiong Wu, Danni Xue, Weimin Zhou
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.7125

A tropomyosin receptor kinase family protein, NTRK2 is a potential predictive biomarker for lung adenocarcinoma
Cited by: 10
Author(s): Xiang Wang, Zhijie Xu, Xi Chen, Xinxin Ren, Jie Wei, Shengqian Zhou, Xue Yang, Shuangshuang Zeng, Long Qian, Geting Wu, Zhicheng Gong, Yuanliang Yan
Software Mentions: 2
Published: about 7 years ago

10.1186/s40249-020-00722-2

Massive migration promotes the early spread of COVID-19 in China: a study based on a scale-free network
Cited by: 12
Author(s): Wenyu Song, Pan Zang, Zhongxing Ding, Xinyu Fang, Liguo Zhu, Yun Zhu, Changjun Bao, Feng Chen, Ming Wu, Zhihang Peng
Software Mentions: 2
Published: about 6 years ago

10.1128/IAI.00686-19

Cutaneous Immunoprofiles of Three Spotted Fever Group Rickettsia Cases
Cited by: 5
Author(s): Na Jia, Hongbo Liu, Yuan-Chun Zheng, Wenqiang Shi, Ran Wei, Yan-Li Chu, Nianzhi Ning, Bao-Gui Jiang, Rui-Ruo Jiang, Tao Li, Qiu-Bo Huo, Cai Bian, Xiong Liu, Yi Sun, Lian-Feng Li, Qian Wang, Wei Wei, Yawei Wang, Frans Jongejan, Jia-Fu Jiang, Jie Song, Hui Wang, Wu‐Chun Cao
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.7089

T cell receptor signaling pathway and cytokine-cytokine receptor interaction affect the rehabilitation process after respiratory syncytial virus infection
Cited by: 22
Author(s): Zuanhao Qian, Zhenglei Zhang, Yingying Wang
Software Mentions: 2
Published: over 7 years ago

10.3390/insects12080704

Transcriptional Profiles of Diploid Mutant Apis mellifera Embryos after Knockout of csd by CRISPR/Cas9
Cited by: 4
Author(s): Xiuxiu Wang, Yan Lin, Liqiang Liang, Haiyang Geng, Meng Zhang, Hongyi Nie, Songkun Su
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.10502

miR-21 is upregulated, promoting fibrosis and blocking G2/M in irradiated rat cardiac fibroblasts
Cited by: 7
Author(s): Huan Guo, Xinke Zhao, Hongling Su, Chengxu Ma, Kai Li, Sue Kong, Kedan Liu, Haining Li, Juan Chang, Tao Wang, Hongyun Guo, Huiping Wei, Zhaoyuan Fu, Xinfang Lv, Yingdong Li
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.143141

Cerebrovascular insufficiency and amyloidogenic signaling in Ossabaw swine with cardiometabolic heart failure
Cited by: 7
Author(s): Bradley J. Baranowski, Matti D. Allen, Jennifer N.K. Nyarko, R. Scott Rector, Jaume Padilla, Darrell D. Mousseau, Christoph Rau, Yibin Wang, M. H. Laughlin, Craig A. Emter, Rebecca E. K. MacPherson, T. Dylan Olver
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.149137

Gene expression atlas of energy balance brain regions
Cited by: 5
Author(s): Maria Caterina De Rosa, Hannah J Glover, George Stratigopoulos, Charles A. LeDuc, Qi Su, Yufeng Shen, Mark W. Sleeman, Wendy K. Chung, Rudolph L. Leibel, Judith Y. Altarejos, Claudia A. Doege
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11691

In silico-driven analysis of the Glossina morsitans morsitans antennae transcriptome in response to repellent or attractant compounds
Cited by: 2
Author(s): Consolata Gakii, Billiah K. Bwana, Grace Mugambi, Esther Mukoya, Paul O. Mireji, Richard Rimiru
Software Mentions: 2
Published: about 5 years ago

10.1186/s40104-020-00436-3

High rumen degradable starch decreased goat milk fat via trans-10, cis-12 conjugated linoleic acid-mediated downregulation of lipogenesis genes, particularly, INSIG1
Cited by: 10
Author(s): Zheng Li, Shengru Wu, Jing Shen, Xiaoying Han, Chunjia Jin, Xiao Chen, Shengguo Zhao, Yangchun Cao, Junhu Yao
Software Mentions: 2
Published: over 6 years ago

10.4172/1948-593X.1000120

Systemic Transcriptional Alterations of Innate and Adaptive Immune Signaling Pathways in Atherosclerosis, Ischemia Stroke, and Myocardial Infarction
Cited by: 11
Author(s): Taura L. Barr, Reynal L VanGilder, Ryan Seiberg, Ashely Petrone, Paul D. Chantler, Chiang-Ching Huang
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.RA118.003280

A dynamic transcriptomic atlas of cytokine-induced killer cells
Cited by: 7
Author(s): Mingyao Meng, Lin Li, Ruhong Li, Wenju Wang, Yang Chen, Youhua Xie, Rui Han, Kai Zhu, Wenwen Huang, Lili Yang, Shuo Li, Jianlin Shi, Wenyong Tan, Hui Gao, Yiyi Zhao, Yang Li, Tan Jinquan, Zongliu Hou
Software Mentions: 2
Published: almost 8 years ago

10.7150/jca.35223

Three novel hub genes and their clinical significance in clear cell renal cell carcinoma
Cited by: 12
Author(s): He Xiao, Ping Chen, Guang Zeng, Dongmei Xu, Xinghuan Wang, Xinhua Zhang
Software Mentions: 2
Published: over 7 years ago

10.7150/jca.38173

Weighted gene co-expression network analysis identifies CCNA2 as a treatment target of prostate cancer through inhibiting cell cycle
Cited by: 22
Author(s): Rui Yang, Yanwei Du, Lei Wang, Zhiyuan Chen, Xiuheng Liu
Software Mentions: 2
Published: over 6 years ago

10.7150/jca.30699

Identification of key genes and pathways associated with esophageal squamous cell carcinoma development based on weighted gene correlation network analysis
Cited by: 10
Author(s): Mingrui Shao, Wenya Li, Shiyang Wang, Zhenghua Liu
Software Mentions: 2
Published: over 6 years ago

10.3390/nu13093210

Association Study among Comethylation Modules, Genetic Polymorphisms and Clinical Features in Mexican Teenagers with Eating Disorders: Preliminary Results
Cited by: 1
Author(s): Germán Alberto Nolasco-Rosales, José Jaime Martínez‐Magaña, Isela Esther Juárez‐Rojop, Thelma Beatríz González-Castro, Carlos Alfonso Tóvilla-Zárate, Ana Rosa Sepúlveda García, Emmanuel Sarmiento, David Ruiz‐Ramos, Alma Delia Genis‐Mendoza, Humberto Nicolini
Software Mentions: 2
Published: almost 5 years ago

10.7150/jca.47918

New novel non-MHC genes were identified for cervical cancer with an integrative analysis approach of transcriptome-wide association study
Cited by: 6
Author(s): Haimiao Chen, Ting Wang, Shuiping Huang, Ping Zeng
Software Mentions: 2
Published: over 5 years ago

10.3390/molecules24142564

Integration of Metabolite Profiling and Transcriptome Analysis Reveals Genes Related to Volatile Terpenoid Metabolism in Finger Citron (C. medica var. sarcodactylis)
Cited by: 37
Author(s): Yaying Xu, Changqing Zhu, Changjie Xu, Jun Sun, Donald Grierson, Bo Zhang, Kunsong Chen
Software Mentions: 2
Published: about 7 years ago

10.7150/jca.48045

Comprehensive investigation of the clinical significance of long non-coding RNA HOXA-AS2 in acute myeloid leukemia using genome-wide RNA sequencing dataset
Cited by: 3
Author(s): Rui Huang, Xiwen Liao, Xiangkun Wang, Qiaochuan Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12967-021-02913-3

MAPK14 over-expression is a transcriptomic feature of polycythemia vera and correlates with adverse clinical outcomes
Cited by: 2
Author(s): Chao Guo, Ya-yue Gao, Qianqian Ju, Min Wang, Chunxia Zhang, Ming Gong, Zhenling Li
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.53697

Identification of tumor mutation burden-related hub genes and the underlying mechanism in melanoma
Cited by: 8
Author(s): Chuan Zhang, Dan Dang, Chenlu Liu, Yuqian Wang, Xianling Cong
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.55113

Identification and validation of the clinical roles of the VHL-related LncRNAs in clear cell renal cell carcinoma
Cited by: 19
Author(s): Wuping Yang, Jingcheng Zhou, Kenan Zhang, Lei Li, Yawei Xu, Kaifang Ma, Haibiao Xie, Lin Cai, Yanqing Gong, Kan Gong
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.10770

Comparative transcriptome and flavonoids components analysis reveal the structural genes responsible for the yellow seed coat color of Brassica rapa L.
Cited by: 8
Author(s): Yudong Ren, Ning Zhang, Ru Li, Xiaomin Ma, Lugang Zhang
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.58768

Use of bioinformatic database analysis and specimen verification to identify novel biomarkers predicting gastric cancer metastasis
Cited by: 6
Author(s): Weimin Wang, Ke Min, Gaoyang Chen, Hui Zhang, Jianliang Deng, Mengying Lv, Zhihong Cao
Software Mentions: 2
Published: over 5 years ago

10.1002/jcb.26598

Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma
Cited by: 56
Author(s): Jukun Song, Qian Xu, Haodeng Zhang, Xinhai Yin, Chen Zhu, Ke Zhao, Jianguo Zhu
Software Mentions: 2
Published: over 8 years ago

10.3390/molecules24061064

Metabolome and Transcriptome Sequencing Analysis Reveals Anthocyanin Metabolism in Pink Flowers of Anthocyanin-Rich Tea (Camellia sinensis)
Cited by: 49
Author(s): Dylan O’Neill Rothenberg, Haijun Yang, Meiban Chen, Wenting Zhang, Lingyun Zhang
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3777

Impact of litter quantity on the soil bacteria community during the decomposition of Quercus wutaishanica litter
Cited by: 18
Author(s): Quanchao Zeng, Yang Liu
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.12126

Identification and validation of hub genes for diabetic retinopathy
Cited by: 3
Author(s): Li Peng, Wei Ma, Qing Xie, Baihua Chen
Software Mentions: 2
Published: almost 5 years ago

10.1111/jcmm.15098

Development and validation of hub genes for lymph node metastasis in patients with prostate cancer
Cited by: 16
Author(s): Ning Xu, Shao‐Hao Chen, Tingting Lin, Hai Cai, Zhi‐Bin Ke, Ru‐Nan Dong, Peng Huang, Xiaodong Li, Ye‐Hui Chen, Qing‐Shui Zheng
Software Mentions: 2
Published: over 6 years ago

10.1111/jcmm.15159

Identification of lncRNA‐associated differential subnetworks in oesophageal squamous cell carcinoma by differential co‐expression analysis
Cited by: 6
Author(s): Wei Liu, Caiyan Gan, Wei Wang, Lian‐Di Liao, Chunquan Li, Li–Yan Xu, En‐Min Li
Software Mentions: 2
Published: over 6 years ago

10.1111/jcmm.15104

High expression of WTAP leads to poor prognosis of gastric cancer by influencing tumour‐associated T lymphocyte infiltration
Cited by: 77
Author(s): Huafu Li, Shan Qiao, Bo Li, Linxiang Lan, Chunming Wang, Wuguo Li, Gangqiang Wang, Wei Chen, Yulong He, Changhua Zhang
Software Mentions: 2
Published: over 6 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Papers Mentioning WGCNA 3,479