cran: WGCNA | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.709340

Molecular Characteristics of Choledochal Cysts in Children: Transcriptome Sequencing
Cited by: 3
Author(s): Yong Mei Lv, Xiaoyan Xie, Lihui Pu, Qi Wang, Siyu Pu, Chengbo Ai, Yi Liu, Jing Chen, Bo Xiang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2017.00041

Analysis of Purified Pancreatic Islet Beta and Alpha Cell Transcriptomes Reveals 11β-Hydroxysteroid Dehydrogenase (Hsd11b1) as a Novel Disallowed Gene
Cited by: 56
Author(s): Timothy J. Pullen, Mark O. Huising, Guy A. Rutter
Software Mentions: 2
Published: over 9 years ago

10.3389/fgene.2020.565749

Integrating Clinical and Genomic Analyses of Hippocampal-Prefrontal Circuit Disorder in Depression
Cited by: 4
Author(s): Naijun Yuan, Kairui Tang, Xiaoli Da, Hua Gan, Liangliang He, Xiaojuan Li, Qingyu Ma, Jiaxu Chen
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00488

An Inflammatory Landscape for Preoperative Neurologic Deficits in Glioblastoma
Cited by: 6
Author(s): Amal Katrib, Hyun-Hwan Jeong, Nina L. Fransen, Kristin S. Henzel, Jeremy A. Miller
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.636550

Bovine Pre-adipocyte Adipogenesis Is Regulated by bta-miR-150 Through mTOR Signaling
Cited by: 6
Author(s): Xingyi Chen, Sayed Haidar Abbas Raza, Xinhao Ma, Jiangfang Wang, Xiaohui Wang, Chengcheng Liang, Xinran Yang, Chugang Mei, Syed Muhammad Suhail, Zan Liu
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.01275

Comparative Transcriptome Analysis Reveals Key Pathways and Hub Genes in Rapeseed During the Early Stage of Plasmodiophora brassicae Infection
Cited by: 27
Author(s): Lixia Li, Ying Long, Hao Li, Xiaoming Wu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2020.00641

Neutrophils, Crucial, or Harmful Immune Cells Involved in Coronavirus Infection: A Bioinformatics Study
Cited by: 68
Author(s): Nima Hemmat, Afshin Derakhshani, Hossein Bannazadeh Baghi, Nicola Silvestris, Behzad Baradaran, Simona De Summa
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.756471

Landscape of T Cells Transcriptional and Metabolic Modules During HIV Infection Based on Weighted Gene Co-expression Network Analysis
Cited by: 5
Author(s): Jianting Xu, Jing Pan, Xin Liu, Nan Zhang, Xinyue Zhang, Guoqing Wang, Wenyan Zhang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.581161

A Chromosome-Level Genome Assembly of the Anglerfish Lophius litulon
Cited by: 2
Author(s): Meiqi Lv, Yaolei Zhang, Kaiqiang Liu, Li Chang, Jiahao Wang, Guangyi Fan, Xin Liu, Huanming Yang, Changlin Liu, Shahid Mahboob, Junnian Liu, Changwei Shao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2021.666561

Integrative Analysis of Gene Expression Through One-Class Logistic Regression Machine Learning Identifies Stemness Features in Multiple Myeloma
Cited by: 2
Author(s): Chunmei Ban, Feiyan Yang, Min Wei, Qin Liu, Jiankun Wang, Lei Chen, Liuting Lu, Dongmei Xie, Lie Liu, Jinxiong Huang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.00039

WGCNA Co-Expression Network Analysis Reveals ILF3-AS1 Functions as a CeRNA to Regulate PTBP1 Expression by Sponging miR-29a in Gastric Cancer
Cited by: 23
Author(s): Zhenhu Ren, Gao-Pan Shang, Kun Wu, Chuanyu Hu, Tong Ji
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.715526

Role of Sulfur Metabolism Gene and High-Sulfur Gene Expression in Wool Growth Regulation in the Cashmere Goat
Cited by: 1
Author(s): Yuan Chai, Yanyong Sun, Bin Liu, Lili Guo, Zaixia Liu, Le Zhou, Lingli Dai, Chunyan Jia, Wenguang Zhang, Li Chun
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2019.00166

SALMON: Survival Analysis Learning With Multi-Omics Neural Networks on Breast Cancer
Cited by: 128
Author(s): Zhi Huang, Xiaowei Zhan, Shunian Xiang, Travis Johnson, Bryan R. Helm, Christina Y. Yu, Jie Zhang, Paul Salama, Maher Rizkalla, Zhi Han, Kun Huang
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.00113

FBXW4 Acts as a Protector of FOLFOX-Based Chemotherapy in Metastatic Colorectal Cancer Identified by Co-Expression Network Analysis
Cited by: 6
Author(s): Yiyi Zhang, Lijun Sun, Xiaojie Wang, Yanwu Sun, Ying Chen, Meifang Xu, Pan Chi, Xingrong Lu, Zongbin Xu
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2019.00454

Multi-Omic Analysis of the Microbiome and Metabolome in Healthy Subjects Reveals Microbiome-Dependent Relationships Between Diet and Metabolites
Cited by: 93
Author(s): Zheng-Zheng Tang, Guanhua Chen, Qilin Hong, Shi Huang, Holly Smith, Rachana Shah, Matthew Scholz, Jane F. Ferguson
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.00574

Long Non-coding RNA and mRNA Profile of Liver Tissue During Four Developmental Stages in the Chicken
Cited by: 10
Author(s): Chunyou Ning, Tianyuan Ma, Silu Hu, Zhongxian Xu, Pu Zhang, Xiaoling Zhao, Yan Wang, Huadong Yin, Yaodong Hu, Xiaolan Fan, Bo Zeng, Mingyao Yang, Dapeng Yang, Qingyong Ni, Yan Li, Mingwang Zhang, Huailiang Xu, Yongfang Yao, Qing Zhu, Diyan Li
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.00153

Identification of 13 Key Genes Correlated With Progression and Prognosis in Hepatocellular Carcinoma by Weighted Gene Co-expression Network Analysis
Cited by: 33
Author(s): Yang Gu, Jun Li, Deliang Guo, Baiyang Chen, Pengpeng Liu, Yusha Xiao, Kuo‐Chung Yang, Zhisu Liu, Quanyan Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.636934

Identification of Hub Genes and MicroRNAs Associated With Idiopathic Pulmonary Arterial Hypertension by Integrated Bioinformatics Analyses
Cited by: 8
Author(s): Xue Qiu, Junyu Lin, Bixiao Liang, Yanbing Chen, Guoqun Liu, Jing Zheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.570094

Enhanced Activity of Genes Associated With Photosynthesis, Phytohormone Metabolism and Cell Wall Synthesis Is Involved in Gibberellin-Mediated Sugarcane Internode Growth
Cited by: 12
Author(s): Rongfa Chen, Yanting Fan, Haifeng Yan, Huiwen Zhou, Zhongfeng Zhou, Mengling Weng, Xing Huang, Prakash Lakshmanan, Yang–Rui Li, Lihang Qiu, Jianming Wu
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2019.01229

Characterization of Blood Surrogate Immune-Methylation Biomarkers for Immune Cell Infiltration in Chronic Inflammaging Disorders
Cited by: 8
Author(s): Ken Declerck, Wim Vanden Berghe
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2020.615308

Identification of Hub Genes Associated With Development and Microenvironment of Hepatocellular Carcinoma by Weighted Gene Co-expression Network Analysis and Differential Gene Expression Analysis
Cited by: 21
Author(s): Qingquan Bai, Haoling Liu, Hongyu Guo, Han Chieh Lin, Xuan Song, Yongfeng Jin, Yao Liu, Hongrui Guo, Shuhang Liang, Ran Song, Jiabei Wang, Zhibo Qu, Huaxin Guo, Hongchi Jiang, Lianxin Liu, Haiyan Yang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.00354

A Co-expression Analysis of the Placental Transcriptome in Association With Maternal Pre-pregnancy BMI and Newborn Birth Weight
Cited by: 23
Author(s): Bianca Cox, Maria Tsamou, Karen Vrijens, Kristof Y. Neven, Ellen Winckelmans, Theo M. de Kok, Michelle Plusquin, Tim S. Nawrot
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.00503

Transcriptomic Analysis of circRNAs and mRNAs Reveals a Complex Regulatory Network That Participate in Follicular Development in Chickens
Cited by: 13
Author(s): Manman Shen, Tingting Li, Fuxiang Chen, Pengfeng Wu, Ying Wāng, Lan Chen, Kaizhou Xie, Jinyu Wang, Genxi Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.649752

Identification of Hub Genes and Construction of a Transcriptional Regulatory Network Associated With Tumor Recurrence in Colorectal Cancer by Weighted Gene Co-expression Network Analysis
Cited by: 9
Author(s): Shengwei Liu, Zeng Fanping, Guangwen Fan, Qiu‐Ting Dong
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.539292

Weighted Gene Co-expression Network Analysis of Key Biomarkers Associated With Bronchopulmonary Dysplasia
Cited by: 10
Author(s): Yao Cai, Fei Ma, LiuHong Qu, Binqing Liu, Hui Xiong, Yanmei Ma, Sitao Li, Hao Hu
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2019.00035

Identification of Pre-symptomatic Gene Signatures That Predict Resilience to Cognitive Decline in the Genetically Diverse AD-BXD Model
Cited by: 20
Author(s): Sarah M. Neuner, Sarah Heuer, Jigang Zhang, Vivek M. Philip, Catherine C. Kaczorowski
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2019.00559

Transcriptome Responses to Dexamethasone Depending on Dose and Glucocorticoid Receptor Sensitivity in the Liver
Cited by: 13
Author(s): Eduard Muráni, Nares Trakooljul, Frieder Hadlich, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2018.00300

Regional Differences and Similarities in the Brain Transcriptome for Mice Selected for Ethanol Preference From HS-CC Founders
Cited by: 15
Author(s): Alexandre M. Colville, Ovidiu D. Iancu, Denesa R. Lockwood, Priscila Darakjian, Shannon K. McWeeney, Robert P. Searles, Christina Zheng, Robert Hitzemann
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2020.565955

Integrative Analysis Extracts a Core ceRNA Network of the Fetal Hippocampus With Down Syndrome
Cited by: 2
Author(s): Shengran Wang, Xia Tang, Litao Qin, Weili Shi, Shasha Bian, Zhaokun Wang, Qingqing Wang, Xin Wang, Jianqin Gu, Bingtao Hao, Keyue Ding, Shixiu Liao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2020.563798

Integrated Analyses of Mouse Stem Cell Transcriptomes Provide Clues for Stem Cell Maintenance and Transdifferentiation
Cited by: 3
Author(s): Limin Wang, Xiaoxiao Li, Jie Hou, Xinhua Song, Wenhai Xie, Liang Shen
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2021.672884

Transcriptome and Co-expression Network Analyses Reveal Differential Gene Expression and Pathways in Response to Severe Drought Stress in Peanut (Arachis hypogaea L.)
Cited by: 13
Author(s): Nannan Zhao, Shunli Cui, Xiukun Li, Bokuan Liu, Hongtao Deng, Yingru Liu, Mingyu Hou, Xinlei Yang, Guangqing Mu, Lifeng Liu
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00348

Genetic Regulation of Liver Metabolites and Transcripts Linking to Biochemical-Clinical Parameters
Cited by: 7
Author(s): Siriluck Ponsuksili, Nares Trakooljul, Frieder Hadlich, Karen Methling, Michael Lalk, Eduard Muráni, Klaus Wimmers
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2019.00146

webCEMiTool: Co-expression Modular Analysis Made Easy
Cited by: 14
Author(s): Lucas Esteves Cardozo, Pedro Russo, Bruno Gomes-Correia, Mariana Araújo-Pereira, Gonzalo Sepúlveda-Hermosilla, Vinicius Maracaja‐Coutinho, Helder I. Nakaya
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2021.685788

Integrated Analysis of mRNA and Non-coding RNA Transcriptome in Pepper (Capsicum chinense) Hybrid at Seedling and Flowering Stages
Cited by: 11
Author(s): Huangying Shu, Zhou He, Hai-ling Mu, Shu-hua Wu, Yi-li Jiang, Zifeng Yang, Yuanyuan Hao, Jie Zhu, Wenjing Bao, Shanhan Cheng, Guopeng Zhu, Zhiwei Wang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.600097

Integrative Analysis of Genomics and Transcriptome Data to Identify Regulation Networks in Female Osteoporosis
Cited by: 5
Author(s): Xianzuo Zhang, Kun Chen, Xiaoxuan Chen, Nikolaos Kourkoumelis, Guoyuan Li, Bing Wang, Zhu Chen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2020.00580

Screening of Potential Key Transcripts Involved in Planarian Regeneration and Analysis of Its Regeneration Patterns by PacBio Long-Read Sequencing
Cited by: 2
Author(s): Ying Yang, Pei-Zheng Wang, Baijie Jin, Zimei Dong, Guangwen Chen, Dezeng Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2018.00143

Determination of Oocyte-Manipulation, Zygote-Manipulation, and Genome-Reprogramming Effects on the Transcriptomes of Bovine Blastocysts
Cited by: 7
Author(s): Byungkuk Min, Jung Sun Park, Yong‐Kook Kang
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2019.00703

Co-Expression Network Analysis Revealed That the ATP5G1 Gene Is Associated With Major Depressive Disorder
Cited by: 12
Author(s): Duan Zeng, He Shen, Changlin Ma, Yi Wen, Yuning Xie, Nan Zhao, Xianfeng Sun, Dongxiang Wang, Yifeng Shen, Yimin Yu, Huafang Li
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2013.00028

Maximal information component analysis: a novel non-linear network analysis method
Cited by: 20
Author(s): Christoph Rau, N. Wisniewski, Luz D. Orozco, Brian J. Bennett, James N. Weiss, Aldons J. Lusis
Software Mentions: 2
Published: almost 14 years ago

10.3389/fgene.2021.615655

Macrophage M2 Co-expression Factors Correlate With the Immune Microenvironment and Predict Outcome of Renal Clear Cell Carcinoma
Cited by: 26
Author(s): Yutao Wang, Kexin Yan, Jiaxing Lin, Jun Li, Jianbin Bi
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.726387

Establishment and Validation of a Genetic Label Associated With M2 Macrophage Infiltration to Predict Survival in Patients With Colon Cancer and to Assist in Immunotherapy
Cited by: 5
Author(s): Boyang Xu, Ziqi Peng, Guanyu Yan, Ningning Wang, Moye Chen, Xue Qing Yao, Mingjun Sun, Yi An
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.671639

Identification of Key Genes and Pathways Associated With Paclitaxel Resistance in Esophageal Squamous Cell Carcinoma Based on Bioinformatics Analysis
Cited by: 2
Author(s): Zhimin Shen, Mingduan Chen, Fei Luo, Hui Xu, Peipei Zhang, Jihong Lin, Mingqiang Kang
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2015.00253

A Systematic Approach to Identify Markers of Distinctly Activated Human Macrophages
Cited by: 26
Author(s): Bayan Sudan, Mark A. Wacker, Mary E. Wilson, Joel W. Graff
Software Mentions: 2
Published: over 11 years ago

10.3389/fimmu.2019.00589

2D Visualization of the Psoriasis Transcriptome Fails to Support the Existence of Dual-Secreting IL-17A/IL-22 Th17 T Cells
Cited by: 9
Author(s): Stephanie Le, Alexander A. Merleev, Guillaume Luxardi, Michiko Shimoda, Iannis E. Adamopoulos, Lam C. Tsoi, Jenny Z. Wang, Claire Alexanian, S. P. Raychaudhuri, Samuel T Hwang, Jóhann E. Guðjónsson, Alina I. Marusina, Emanual Maverakis
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2019.01531

Global Transcriptome Profiling of Multiple Porcine Organs Reveals Toxoplasma gondii-Induced Transcriptional Landscapes
Cited by: 8
Author(s): Jun-Jun He, Jun Ma, Jin‐Lei Wang, Fu-Kai Zhang, Jiexi Li, Bintao Zhai, Ze-Xiang Wang, Hany M. Elsheikha, Xingquan Zhu
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2017.00918

Multitype Network-Guided Target Controllability in Phenotypically Characterized Osteosarcoma: Role of Tumor Microenvironment
Cited by: 17
Author(s): Ankush Sharma, Caterina Cinti, Enrico Capobianco
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.709164

Defining a Methylation Signature Associated With Operational Tolerance in Kidney Transplant Recipients
Cited by: 5
Author(s): Ramón María Alvargonzález Rodríguez, María P. Hernández-Fuentes, Viviana Corte-Iglesias, María Laura Sáiz, Juan José Lozano, Ana R. Cortázar, Isabel Mendizabal, María Luisa Suárez-Fernández, Eliécer Coto, Antonio López-Vázquez, Carmen Díaz‐Corte, Ana M. Aransay, Carlos López‐Larrea, Beatriz Suárez-Álvarez
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.699633

IRF7-Associated Immunophenotypes Have Dichotomous Responses to Virus/Allergen Coexposure and OM-85-Induced Reprogramming
Cited by: 3
Author(s): Emma de Jong, Jean-François Lauzon-Joset, Jonatan Leffler, Michael Serralha, Alexander N. Larcombe, Claus T. Christophersen, Patrick G. Holt, Deborah H. Strickland, Anthony Bosco
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.738435

Recognition of Tumor-Associated Antigens and Immune Subtypes in Glioma for mRNA Vaccine Development
Cited by: 10
Author(s): Shuai Ma, Yixu Ba, Hang Ji, Fang Wang, Jianyang Du, Shaoshan Hu
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.658341

Exploration of the Shared Gene Signatures and Molecular Mechanisms Between Systemic Lupus Erythematosus and Pulmonary Arterial Hypertension: Evidence From Transcriptome Data
Cited by: 31
Author(s): Meng Yao, Chunyi Zhang, Congcong Gao, Qianqian Wang, Mengmeng Dai, Runzhi Yue, Wenbo Sun, Wenfang Liang, Zhaohui Zheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.738068

A Comprehensive Prognostic and Immunological Analysis of a Six-Gene Signature Associated With Glycolysis and Immune Response in Uveal Melanoma
Cited by: 8
Author(s): Jun Li, Jianjun Lu, Wenli Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2020.580838

IFIH1 Contributes to M1 Macrophage Polarization in ARDS
Cited by: 14
Author(s): Zhen Shi, Cuilin Chu, Zongsheng Wu, Feng Liu, Jianfeng Xie, Yi Yang, Haibo Qiu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.615859

Integrated Transcriptome Profiling Revealed That Elevated Long Non-Coding RNA-AC007278.2 Expression Repressed CCR7 Transcription in Systemic Lupus Erythematosus
Cited by: 14
Author(s): Yi You, Xingwang Zhao, WU Yu-hua, Jiangming Mao, Lan Ge, Junkai Guo, Chunrong Zhao, Dong Chen, Zhiqiang Song
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.670971

Identification of Inflammation-Related Biomarker Lp-PLA2 for Patients With COPD by Comprehensive Analysis
Cited by: 21
Author(s): Mingming Deng, Yan Yin, Qin Zhang, Xiaoming Zhou, Gang Hou
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.609900

Predicting Non-Alcoholic Fatty Liver Disease Progression and Immune Deregulations by Specific Gene Expression Patterns
Cited by: 16
Author(s): Fanhong Zeng, Yue Zhang, Xu Han, Min Zeng, Yi Gao, Jun Weng
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.727104

The Role of graRS in Regulating Virulence and Antimicrobial Resistance in Methicillin-Resistant Staphylococcus aureus
Cited by: 4
Author(s): Le Chen, Zihui Wang, Tao Xu, Hongfei Ge, Fang Zhou, Xiaoyi Zhu, Xianhui Li, Di Qu, Cheng Zheng, Yang Wu, Keqing Zhao
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.02613

Different Selectivity in Fungal Communities Between Manure and Mineral Fertilizers: A Study in an Alkaline Soil After 30 Years Fertilization
Cited by: 20
Author(s): Ying Wang, Hongfei Ji, Yaxian Hu, Rui Wang, Junpeng Rui, Shengli Guo
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2020.554051

Fungal Composition and Diversity of the Tobacco Leaf Phyllosphere During Curing of Leaves
Cited by: 28
Author(s): Qianli Chen, Lin Cai, Han-Cheng Wang, Lun Cai, Paul H. Goodwin, Ma Jun, Feng Wang, Li Zhong
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.02123

Dramatic Remodeling of the Gut Microbiome Around Parturition and Its Relationship With Host Serum Metabolic Changes in Sows
Cited by: 20
Author(s): Xiaowan Huang, Jun Gao, Yuanzhang Zhao, Maozhang He, Shanlin Ke, Jinyuan Wu, Yunyan Zhou, Hao Fu, Hui Yang, Congying Chen, Lusheng Huang
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.02365

Temporal Dynamics of the Soil Metabolome and Microbiome During Simulated Anaerobic Soil Disinfestation
Cited by: 44
Author(s): Shashika S. Hewavitharana, Emmi Klarer, Andrew J. Reed, Rachel Leisso, Brenton C. Poirier, Loren Honaas, David R. Rudell, Mark Mazzola
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.581313

The Mosaic Architecture of NRPS-PKS in the Arbuscular Mycorrhizal Fungus Gigaspora margarita Shows a Domain With Bacterial Signature
Cited by: 7
Author(s): Francesco Venice, Alessandro Desirò, Gladstone Alves da Silva, Alessandra Salvioli, Paola Bonfante
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.00520

Weighted Gene Co-expression Network Analysis Identifies Critical Genes for the Production of Cellulase and Xylanase in Penicillium oxalicum
Cited by: 20
Author(s): Chengxi Li, Shuai Zhao, Xi Luo, Jia‐Xun Feng
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.601864

Episodic Decrease in Temperature Increases mcy Gene Transcription and Cellular Microcystin in Continuous Cultures of Microcystis aeruginosa PCC 7806
Cited by: 20
Author(s): Robbie M. Martin, Mohammad Moniruzzaman, Gwendolyn F. Stark, Eric R. Gann, Dominique S. Derminio, Bofan Wei, Ferdi L. Hellweger, Ameet J. Pinto, Gregory L. Boyer, Steven W. Wilhelm
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.684351

High-Throughput In Vitro Gene Expression Profile to Screen of Natural Herbals for Breast Cancer Treatment
Cited by: 4
Author(s): Ling Kui, Qinghua Kong, Xiaonan Yang, Yunbing Pan, Zetan Xu, Shouling Wang, Jian Chen, Kunhua Wei, Xiaolei Zhou, Xuebo Yang, Tingqin Wu, Anthati Mastan, Yao Liu, Jun Miao
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.00823

RNA Sequencing Revealed Signals of Evolution From Gallbladder Stone to Gallbladder Carcinoma
Cited by: 14
Author(s): Jinghan Wang, Chang Xu, Qiang Cheng, Jiangman Zhao, Shouxin Wu, Wushuang Li, Wenxue Ma, Chen Liu, Xiaoqing Jiang
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2019.00678

The Expression and Effection of MicroRNA-499a in High-Tobacco Exposed Head and Neck Squamous Cell Carcinoma: A Bioinformatic Analysis
Cited by: 11
Author(s): Shi-Cai Gong, Meng Xu, Ming Xiang, Yijun Shan, Hao Zhang
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2019.00291

Identification of RE1-Silencing Transcription Factor as a Promoter of Metastasis in Pancreatic Cancer
Cited by: 6
Author(s): Haoyi Jin, Peng Liu, Lingming Kong, Xiang Fei, Yang Gao, Tianyu Wu, Defeng Sun
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2019.01446

LDHA Promotes Oral Squamous Cell Carcinoma Progression Through Facilitating Glycolysis and Epithelial–Mesenchymal Transition
Cited by: 60
Author(s): Hao Cai, Jiaxin Li, Yadong Zhang, Yan Liao, Yue Zhu, Cheng Wang, Jinsong Hou
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2019.01195

Huaier Suppresses Breast Cancer Progression via linc00339/miR-4656/CSNK2B Signaling Pathway
Cited by: 23
Author(s): Wei Wang, Xiaolong Wang, Chen Li, Tong Chen, Ning Zhang, Yiran Liang, Yaming Li, Hanwen Zhang, Ying Liu, Xinwei Song, Wenjing Zhao, Bing Chen, Limin Wang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2020.00498

Identifying Long Non-coding RNA of Prostate Cancer Associated With Radioresponse by Comprehensive Bioinformatics Analysis
Cited by: 8
Author(s): Meng Xu, Shi-Cai Gong, Yue Li, Jun Zhou, Junhua Du, Yang Cheng, Mingwei Yang, Fan Zhang, Chaozhao Liang, Zhuting Tong
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.541928

Gene Expression Signatures Identify Biologically Homogenous Subgroups of Grade 2 Meningiomas
Cited by: 4
Author(s): Zsolt Zádor, Alexander Landry, Ashirbani Saha, Michael D. Cusimano
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.00250

Integrated Transcriptome Analyses and Experimental Verifications of Mesenchymal-Associated TNFRSF1A as a Diagnostic and Prognostic Biomarker in Gliomas
Cited by: 7
Author(s): Biao Yang, Yuan‐Bo Pan, Yupo Ma, Sheng‐Hua Chu
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.651622

Cancer Stemness Associated With Prognosis and the Efficacy of Immunotherapy in Adrenocortical Carcinoma
Cited by: 13
Author(s): Xiaoxi Shi, Yuanlin Liu, Shuai Cheng, Haidi Hu, Jian Zhang, Minjie Wei, Lin Zhao, Shijie Xin
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.00434

Integrating Clinical and Genetic Analysis of Perineural Invasion in Head and Neck Squamous Cell Carcinoma
Cited by: 40
Author(s): Ze Zhang, Ruoyan Liu, Rui Jin, Yonggang Fan, Tingting Li, Yanjie Shuai, Xingchen Li, Xudong Wang, Jingtao Luo
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2019.00360

A Novel Set of WNT Pathway Effectors as a Predictive Marker of Uterine Corpus Endometrial Carcinoma–Study Based on Weighted Co-expression Matrices
Cited by: 3
Author(s): Katarzyna Kośla, Magdalena Orzechowska, Dorota Jędroszka, Izabela Baryła, Andrzej K. Bednarek, Elżbieta Płuciennik
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2020.542492

Dysregulation of the Immune Microenvironment Contributes to Malignant Progression and Has Prognostic Value in Bladder Cancer
Cited by: 15
Author(s): Zongtai Zheng, Shun Mao, Wentao Zhang, Liu Ji, Cheng Li, Ruiliang Wang, Xudong Yao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2019.00959

Profiling of tRNA Halves and YRNA Fragments in Serum and Tissue From Oral Squamous Cell Carcinoma Patients Identify Key Role of 5′ tRNA-Val-CAC-2-1 Half
Cited by: 17
Author(s): Joseph M. Dhahbi, Yury O. Nunez Lopez, Augusto Schneider, Berta Victoria, Tatiana D. Saccon, Krish Bharat, Thaddeus S. McClatchey, Hani Atamna, Wojciech Ścierski, Paweł Golusiński, Wojciech Golusiński, Michał M. Masternak
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2021.583083

COL5A2 Promotes Proliferation and Invasion in Prostate Cancer and Is One of Seven Gleason-Related Genes That Predict Recurrence-Free Survival
Cited by: 26
Author(s): Xiaohan Ren, Xinglin Chen, Kai Fang, Xu Zhang, Xiao‐Hong Wei, Tong-Tong Zhang, Guangyao Li, Zhongwen Lü, Ninghong Song, Shangqian Wang, Chao Qin
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.01474

Comprehensive Analysis of Competitive Endogenous RNAs Network, Being Associated With Esophageal Squamous Cell Carcinoma and Its Emerging Role in Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Donghu Yu, Xiaolan Ruan, Jingyu Huang, Weidong Hu, Chen Chen, Yu Xu, Jian Hou, Sheng Li
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2019.01019

Multi-omics Analysis of Microenvironment Characteristics and Immune Escape Mechanisms of Hepatocellular Carcinoma
Cited by: 51
Author(s): Wenli Li, Huimei Wang, Zhu Ma, Jian Zhang, Wen Ouyang, Qi Yan, Jun Li
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2020.599085

Editorial: Bioinformatics Tools (and Web Server) for Cancer Biomarker Development
Cited by: 3
Author(s): Longxiang Xie, Liuyang Wang, Wan Zhu, Jing Zhao, Xiangqian Guo
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2021.656132

Ginsenoside Rh7 Suppresses Proliferation, Migration and Invasion of NSCLC Cells Through Targeting ILF3-AS1 Mediated miR-212/SMAD1 Axis
Cited by: 5
Author(s): Xiangbo Chen, Wenguang Liu, Liu B
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.00310

Overexpression of ASPM, CDC20, and TTK Confer a Poorer Prognosis in Breast Cancer Identified by Gene Co-expression Network Analysis
Cited by: 50
Author(s): Jianing Tang, Mengxin Lü, Qiuxia Cui, Dan Zhang, Deguang Kong, Xing Liao, Jiangbo Ren, Yan Gong
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2021.634075

Development and Validation of Novel Biomarkers Related to M2 Macrophages Infiltration by Weighted Gene Co-Expression Network Analysis in Prostate Cancer
Cited by: 7
Author(s): Ning Xu, Ru‐Nan Dong, Tingting Lin, Lin Tian, Yunzhi Lin, Shao‐Hao Chen, Jiang Zhu, Zhi‐Bin Ke, Fei Huang, Ye‐Hui Chen, Xue-Yi Xue
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.00903

Immune Landscape of Invasive Ductal Carcinoma Tumor Microenvironment Identifies a Prognostic and Immunotherapeutically Relevant Gene Signature
Cited by: 33
Author(s): Xuanwen Bao, Run Shi, Kai Zhang, Xin Shan, Xin Li, Yanbo Zhao, Yanfang Wang
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2020.591739

Prognostic Signatures Based on Thirteen Immune-Related Genes in Colorectal Cancer
Cited by: 15
Author(s): Xiaobo Ma, Yuanyuan Xu, Min Zhu, Lu Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.692774

An Adaptive Transfer-Learning-Based Deep Cox Neural Network for Hepatocellular Carcinoma Prognosis Prediction
Cited by: 7
Author(s): Hua Chai, Xia Long, Lei Zhang, Jiarui Yang, Zhongyue Zhang, Xiangjun Qian, Yuedong Yang, Weidong Pan
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.554138

Identification of Immune-Related Therapeutically Relevant Biomarkers in Breast Cancer and Breast Cancer Stem Cells by Transcriptome-Wide Analysis: A Clinical Prospective Study
Cited by: 5
Author(s): Linbang Wang, Wei Liu, Jingkun Liu, Yuanyuan Wang, Jiaojiao Tai, Xuedong Yin, Jinxiang Tan
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.684232

PSMB7 Is a Key Gene Involved in the Development of Multiple Myeloma and Resistance to Bortezomib
Cited by: 3
Author(s): Dong Wu, Jiyu Miao, Jinsong Hu, Fangmei Li, Dandan Gao, Hongli Chen, Yuandong Feng, Ying Shen, Aili He
Software Mentions: 2
Published: over 5 years ago

10.3389/fphar.2019.00582

Prediction of VEGF-C as a Key Target of Pure Total Flavonoids From Citrus Against NAFLD in Mice via Network Pharmacology
Cited by: 17
Author(s): Hong Wang, Songsong Li, Liyan Wu, Beihui He, Jianping Jiang, Zhiyun Chen
Software Mentions: 2
Published: over 7 years ago

10.3389/fphar.2020.00387

NCAPG Is a Promising Therapeutic Target Across Different Tumor Types
Cited by: 30
Author(s): Cuicui Xiao, Jiao Gong, Yusheng Jie, Jing Cao, Zhongcheng Chen, Rong Li, Yutian Chong, Bo Hu, Qi Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2021.658511

Uridine Diphosphate Promotes Rheumatoid Arthritis Through P2Y6 Activation
Cited by: 2
Author(s): Hongxing Wang, Hui Wu, Kehua Fang, Xiaotian Chang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphar.2021.732541

Distinctive Gut Microbiota in Patients with Overweight and Obesity with Dyslipidemia and its Responses to Long-term Orlistat and Ezetimibe Intervention: A Randomized Controlled Open-label Trial
Cited by: 17
Author(s): Jin Jin, Ruyue Cheng, Yan Ren, Xi Shi, Jiani Wang, Yigui Xue, Huimin Zhang, Xian Jia, Tingting Li, Fang He, Haoming Tian
Software Mentions: 2
Published: about 5 years ago

10.3389/fphar.2020.575765

Regulatory Master Genes Identification and Drug Repositioning by Integrative mRNA-miRNA Network Analysis for Acute Type A Aortic Dissection
Cited by: 7
Author(s): Junjun Fang, Zongfu Pan, Hao Yu, Shuanying Yang, Xiaoping Hu, Xiaoyang Lu, Li Lü
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphar.2021.637253

IMCC: A Novel Quantitative Approach Revealing Variation of Global Modular Map and Local Inter-Module Coordination Among Differential Drug’s Targeted Cerebral Ischemic Networks
Cited by: 0
Author(s): Pengqian Wang, Yanan Yu, Jun Li, Bing Li, Yingying Zhang, Dongfeng Li, Wenjuan Xu, Qiong Liu, Zhong Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2018.00236

Arachidonic Acid Metabolism Pathway Is Not Only Dominant in Metabolic Modulation but Associated With Phenotypic Variation After Acute Hypoxia Exposure
Cited by: 8
Author(s): Chang Liu, Bao Liu, Lu Liu, Erlong Zhang, Bind-da Sun, Gang Xu, Jian Chen, Yuqi Gao
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2020.00106

An Overview of Embryogenesis: External Morphology and Transcriptome Profiling in the Hemipteran Insect Nilaparvata lugens
Cited by: 14
Author(s): Xiaolong Fan, Rui Pang, Wan‐Xue Li, Abhishek Ojha, Dan Li, Wenqing Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2021.656649

Whitefly Network Analysis Reveals Gene Modules Involved in Host Plant Selection, Development and Evolution
Cited by: 6
Author(s): Jiahui Tian, Hao Zhan, Youssef Dewer, Biyun Zhang, Cheng Qu, Chen Luo, Fengqi Li, Shiyong Yang
Software Mentions: 2
Published: over 5 years ago

Projects: cran: WGCNA

Science Score: 85/100

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Penalties:

Papers Mentioning WGCNA 3,479