cran: VennDiagram | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-26639-3

Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments
Cited by: 11
Author(s): Corné Swart, Silvia Martínez-Jaime, Michał Górka, Kerstin Zander, Alexander Graf
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-29442-2

Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity
Cited by: 12
Author(s): Ke Zhao, Jing Li, Mingli Shen, Qiang Chen, Maoke Liu, Xiaolin Ao, Decong Liao, Yunfu Gu, Kaiwei Xu, Menggen Ma, Xiumei Yu, Quanju Xiang, Ji Chen, Xiaoping Zhang, Petri Penttinen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-33634-1

Diversity and characteristics of colonization of root-associated fungi of Vaccinium uliginosum
Cited by: 24
Author(s): Hongyi Yang, Xingyu Zhao, Changli Liu, Long Bai, Min Zhao, Lili Li
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-38123-z

Metabarcoding reveals that rhizospheric microbiota of Quercus pyrenaica is composed by a relatively small number of bacterial taxa highly abundant
Cited by: 18
Author(s): Ana V. Lasa, Antonio José Fernández-González, Pablo J. Villadas, Nicolás Toro, Manuel Fernández‐López
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-44574-9

Vitamin D and Wnt3A have additive and partially overlapping modulatory effects on gene expression and phenotype in human colon fibroblasts
Cited by: 19
Author(s): Gemma Ferrer-Mayorga, Núria Niell, Ramón Cantero, José Manuel González‐Sancho, Luis del Peso, Alberto Múñoz, María Jesús Larriba
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-59976-3

Immune correlates of postexposure vaccine protection against Marburg virus
Cited by: 18
Author(s): Courtney Woolsey, Allen Jankeel, Demetrius Matassov, Joan B. Geisbert, Krystle N. Agans, Viktoriya Borisevich, Robert W. Cross, Daniel J. Deer, Karla A. Fenton, Theresa Latham, Cheryl Gerardi, Chad E. Mire, John H. Eldridge, Ilhem Messaoudi
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-69422-z

Significant correlation between plasma proteome profile and pain intensity, sensitivity, and psychological distress in women with fibromyalgia
Cited by: 26
Author(s): Karin Wåhlén, Malin Ernberg, Eva Kosek, Kaisa Mannerkorpi, Björn Gerdle, Bijar Ghafouri
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-70248-y

Transcriptome sequencing supports a conservation of macrophage polarization in fish
Cited by: 24
Author(s): Annelieke S. Wentzel, Jules Petit, Wouter G. van Veen, I.R. Fink, Marleen Scheer, M. Carla Piazzon, Maria Forlenza, Herman P. Spaink, G.F. Wiegertjes
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-74033-9

Spirochetes isolated from arthropods constitute a novel genus Entomospira genus novum within the order Spirochaetales
Cited by: 1
Author(s): Lucía Graña-Miraglia, Silvie Šikutová, Marie Vancová, Tomáš Bílý, Volker Fingerle, Andreas Sing, Santiago Castillo-Ramírez, Gabriele Margos, Ivo Rudolf
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-75794-z

Comparative physiological and transcriptomic analysis of pear leaves under distinct training systems
Cited by: 4
Author(s): Zheng Liu, Liyuan An, Shan Lin, Tao Wu, Xianming Li, Junfan Tu, Yang Fang, Hongliang Zhu, Li Yang, Yuxiang Cheng, Qin ZhongQi
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-76012-6

Portuguese wild grapevine genome re-sequencing (Vitis vinifera sylvestris)
Cited by: 4
Author(s): Maria Joào Ramos, João L. Coito, David Faísca-Silva, Jorge Cunha, Maria Manuela Ribeiro Costa, Sara Amâncio, Margarida Rocheta
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-75207-1

Curing piglets from diarrhea and preparation of a healthy microbiome with Bacillus treatment for industrial animal breeding
Cited by: 24
Author(s): Shousong Yue, Zhentian Li, Fangfang Hu, Jean-François Picimbon
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-78339-6

MACE RNA sequencing analysis of conjunctival squamous cell carcinoma and papilloma using formalin-fixed paraffin-embedded tumor tissue
Cited by: 8
Author(s): Stefaniya Boneva, Anja Schlecht, Peipei Zhang, Daniel Boehringer, Thabo Lapp, Hans Mittelviefhaus, Thomas Reinhard, Claudia Auw-Haedrich, Guenther Schlunck, Julian Wolf, Clemens Lange
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-79206-0

Soil fungal and bacterial communities in southern boreal forests of the Greater Khingan Mountains and their relationship with soil properties
Cited by: 11
Author(s): Thi‐Minh‐Dien Vuong, Jianyong Zeng, Xiuling Man
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-84422-3

Nitrogen addition decreases methane uptake caused by methanotroph and methanogen imbalances in a Moso bamboo forest
Cited by: 14
Author(s): Quan Li, Changhui Peng, Junbo Zhang, Yongfu Li, Xinzhang Song
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-85812-3

Distinct DNA methylation patterns associated with treatment resistance in metastatic castration resistant prostate cancer
Cited by: 8
Author(s): Madonna Peter, Misha Bilenky, Alastair Davies, Ruth Isserlin, Gary D. Bader, Neil Fleshner, Martin Hirst, Amina Zoubeidi, Bharati Bapat
Software Mentions: 3
Published: over 3 years ago

10.1186/s13287-019-1209-x

Human iPSC-derived MSCs (iMSCs) from aged individuals acquire a rejuvenation signature
Cited by: 76
Author(s): Lucas‐Sebastian Spitzhorn, Matthias Megges, Wasco Wruck, Shaifur Rahman, Jörg Otte, Özer Degistirici, Roland Meisel, Rüdiger V. Sorg, Richard O.C. Oreffo, James Adjaye
Software Mentions: 3
Published: over 5 years ago

10.1128/mBio.00598-21

Managing Contamination and Diverse Bacterial Loads in 16S rRNA Deep Sequencing of Clinical Samples: Implications of the Law of Small Numbers
Cited by: 7
Author(s): Ruben Dyrhovden, Martin Rippin, Kjell Øvrebø, Randi Nygaard, Elling Ulvestad, Øyvind Kommedal
Software Mentions: 3
Published: over 3 years ago

10.1084/jem.20171029

ATG16L1 orchestrates interleukin-22 signaling in the intestinal epithelium via cGAS–STING
Cited by: 109
Author(s): Konrad Aden, Florian Tran, Go Ito, Raheleh Sheibani-Tezerji, Simone Lipinski, Johannes Kuiper, Markus Tschurtschenthaler, Svetlana Saveljeva, Joya Bhattacharyya, Robert Häsler, Kareen Bartsch, Anne Luzius, Marlene Jentzsch, Maren Falk-Paulsen, Stephanie T. Stengel, Lina Welz, Robin Schwarzer, Björn Rabe, Winfried Barchet, Stefan Krautwald, Gunther Hartmann, Manolis Pasparakis, Richard S. Blumberg, Stefan Schreiber, Arthur Kaser, Philip Rosenstiel
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.21666

A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress
Cited by: 86
Author(s): Alicia N. McMurchy, Przemyslaw Stempor, Tessa Gaarenstroom, Brian Wysolmerski, Dong Yan, Darya Aussianikava, Alex Appert, Ni Huang, Paulina Kolasinska-Zwierz, Alexandra Sapetschnig, Eric A. Miska, Julie Ahringer
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.53375

Integrated analysis of H2A.Z isoforms function reveals a complex interplay in gene regulation
Cited by: 29
Author(s): Assala Lamaa, Jonathan Humbert, Marion Aguirrebengoa, Xue Cheng, Estelle Nicolas, Jacques Côté, Didier Trouche
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.00348

Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates
Cited by: 188
Author(s): Hannah K. Long, David Sims, Andreas Heger, Neil P. Blackledge, Claudia Kutter, Megan Lynne Wright, Frank Grützner, Duncan T. Odom, Roger Patient, Chris P. Ponting, Robert J. Klose
Software Mentions: 3
Published: over 11 years ago

10.3390/ijms20092265

Effect of Drought Stress and Developmental Stages on Microbial Community Structure and Diversity in Peanut Rhizosphere Soil
Cited by: 58
Author(s): Lei Dai, Guanchu Zhang, Zipeng Yu, Hong Ding, Yang Xu, Zhimeng Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21030945

Effect of Pepper-Containing Diets on the Diversity and Composition of Gut Microbiome of Drosophila melanogaster
Cited by: 8
Author(s): Marleny García-Lozano, Joshua Haynes, Carlos Lopez-Ortiz, Purushothaman Natarajan, Yadira Peña-Garcia, Padma Nimmakayala, John R. Stommel, Suresh Babu Alaparthi, Cristian Sirbu, Nagamani Balagurusamy, Umesh K. Reddy
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21041546

The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming
Cited by: 12
Author(s): Olga Andrzejczak, Jesper Foged Havelund, Weiqing Wang, Sergey I. Kovalchuk, Christina E Hagensen, Harald Hasler-Sheetal, Ole N. Jensen, Adelina Rogowska-Wrzesińska, Ian Max Møller, Kim H. Hebelstrup
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms21103472

Identification of Upstream Transcriptional Regulators of Ischemic Cardiomyopathy Using Cardiac RNA-Seq Meta-Analysis
Cited by: 8
Author(s): Ahmad Alimadadi, Sachin Aryal, Ishan Manandhar, Bina Joe, Xi Cheng
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms21124516

IPSC-Derived Neuronal Cultures Carrying the Alzheimer’s Disease Associated TREM2 R47H Variant Enables the Construction of an Aβ-Induced Gene Regulatory Network
Cited by: 8
Author(s): Soraia Martins, Andreas Müller‐Schiffmann, Lars Erichsen, Martina Bohndorf, Wasco Wruck, Kristel Sleegers, Christine Van Broeckhoven, Carsten Korth, James Adjaye
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms22020832

Common Transcriptional Program of Liver Fibrosis in Mouse Genetic Models and Humans
Cited by: 3
Author(s): Kaja Blagotinšek Cokan, Žiga Urlep, Miha Moškon, Miha Mraz, Xiang Yi Kong, Winnie Eskild, Damjana Rozman, Peter Juvan, Tadeja Režen
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22063164

CaMKIIα Expressing Neurons to Report Activity-Related Endogenous Hypoxia upon Motor-Cognitive Challenge
Cited by: 4
Author(s): Umer Javed Butt, Imam Hassouna, Laura Fernandez Garcia-Agudo, Agnes A. Steixner-Kumar, Constanze Depp, Nadine Barnkothe, Matthias R. Zillmann, Anja Ronnenberg, Viktoria Bonet, Sandra Goebbels, Klaus‐Armin Nave
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22158172

Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins
Cited by: 9
Author(s): Orarat Ginsawaeng, Michał Górka, Alexander Erban, Carolin Heise, Franziska Brueckner, Rainer Hoefgen, Joachim Kopka, Aleksandra Skirycz, Dirk K. Hincha, Ellen Zuther
Software Mentions: 3
Published: over 3 years ago

10.18632/oncotarget.14918

A meta-analysis of HLA peptidome composition in different hematological entities: entity-specific dividing lines and “pan-leukemia” antigens
Cited by: 11
Author(s): Linus Backert, Daniel J. Kowalewski, Juliane S. Walz, Heiko Schuster, Claudia Berlin, Marian C. Neidert, Mirle Schemionek, Tim H. Brümmendorf, Vladan Vučinić, Dietger Niederwieser, Lothar Kanz, Helmut R. Salih, Oliver Kohlbacher, Katja Weisel, Hans‐Georg Rammensee, Stefan Stevanović, Juliane S. Walz
Software Mentions: 3
Published: almost 8 years ago

10.18632/oncotarget.25572

Transcriptome profiling of anti-müllerian hormone treated preantral/small antral mouse ovary follicles
Cited by: 2
Author(s): Zia Ur Rehman, Faheem Ahmed Khan, Farmanullah, Hira Sajjad Talpur, Qing Liu, Shenhe Liu, Liguo Yang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13018-020-01965-3

Identification of potential specific biomarkers and key signaling pathways between osteogenic and adipogenic differentiation of hBMSCs for osteoporosis therapy
Cited by: 9
Author(s): Jianjun Wu, Peian Cai, Zhenhui Lu, Zhang Zhi, Xixi He, Bikang Zhu, Li Zheng, Jinmin Zhao
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0193671

Evaluation of milk sample fractions for characterization of milk microbiota from healthy and clinical mastitis cows
Cited by: 49
Author(s): Svetlana Lima, M.L.S. Bicalho, R.C. Bicalho
Software Mentions: 2
Published: over 6 years ago

10.1534/g3.117.300415

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Cited by: 26
Author(s): Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0194146

STAT3 precedes HIF1α transcriptional responses to oxygen and oxygen and glucose deprivation in human brain pericytes
Cited by: 19
Author(s): Robert Carlsson, Ilknur Özen, Marco Barbariga, Abderahim Gaceb, Michaela Roth, Gesine Paul
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0187636

Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications
Cited by: 125
Author(s): Xavier Pochon, Anastasija Zaiko, Lauren Fletcher, Olivier Laroche, Susanna A. Wood
Software Mentions: 2
Published: about 7 years ago

10.3390/genes10080612

Identification of Key Genes and Pathways in Pancreatic Cancer Gene Expression Profile by Integrative Analysis
Cited by: 16
Author(s): Wei Lü, Ning Li, Fuyuan Liao
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11010060

Meta-Analysis of Dilated Cardiomyopathy Using Cardiac RNA-Seq Transcriptomic Datasets
Cited by: 25
Author(s): Ahmad Alimadadi, Patricia B. Munroe, Bina Joe, Xi Cheng
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12866-021-02203-4

Comparative genome analysis of multidrug-resistant Pseudomonas aeruginosa JNQH-PA57, a clinically isolated mucoid strain with comprehensive carbapenem resistance mechanisms
Cited by: 8
Author(s): Ming C. Hao, Wanli Ma, Xiutao Dong, Xiaofeng Li, Fang Cheng, Yujiao Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12876-017-0713-7

Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease
Cited by: 29
Author(s): Jacob J. Hughey, Bonnie K. Ray, Anne R. Lee, Kristin Voorhees, Ciarán P. Kelly, Detlef Schuppan
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pgen.1007003

Genomics-enabled analysis of the emergent disease cotton bacterial blight
Cited by: 36
Author(s): Anne Z. Phillips, Jeffrey C. Berry, Mark C. Wilson, Anupama Vijayaraghavan, Jillian Burke, Jason Bunn, Tom Allen, Terry A. Wheeler, Rebecca Bart
Software Mentions: 2
Published: about 7 years ago

10.1038/srep16923

Efficient Test and Visualization of Multi-Set Intersections
Cited by: 286
Author(s): Minghui Wang, Yang Zhao, Bin Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep22919

Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans
Cited by: 27
Author(s): Salah Zangenah, Nasir M. Abbasi, Anders F. Andersson, Peter Bergman
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-00953-8

Responses of denitrifying bacterial communities to short-term waterlogging of soils
Cited by: 34
Author(s): Yong Wang, Yoshitaka Uchida, Yumi Shimomura, Hiroko Akiyama, Masahito Hayatsu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-01446-4

Analysis of biofilm bacterial communities under different shear stresses using size-fractionated sediment
Cited by: 38
Author(s): Hongwei Fang, Yishan Chen, Lei Huang, Guojian He
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-01856-4

Establishment of a Strong Link Between Smoking and Cancer Pathogenesis through DNA Methylation Analysis
Cited by: 57
Author(s): Yunlong Ma, Ming D. Li
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20051232

Potential Functions of the Gastrointestinal Microbiome Inhabiting the Length of the Rat Digest Tract
Cited by: 4
Author(s): Dongyao Li, Haiqin Chen, Jianxin Zhao, Hao Zhang
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9946

Identification of hub genes and small molecule therapeutic drugs related to breast cancer with comprehensive bioinformatics analysis
Cited by: 13
Author(s): Mingqian Hao, Wencong Liu, Chuanbo Ding, Xiaojuan Peng, Yue Zhang, Huiying Chen, Ling Dong, Xinglong Liu, Yingchun Zhao, Xueyan Chen, Sadia Khatoon, Yinan Zheng
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-018-25686-0

Metabolic Reprogramming in Leaf Lettuce Grown Under Different Light Quality and Intensity Conditions Using Narrow-Band LEDs
Cited by: 57
Author(s): Kazuyoshi Kitazaki, Atsushi Fukushima, Ryo Nakabayashi, Yuji Okazaki, Makoto Kobayashi, Tetsuya Mori, Tomoko Nishizawa, Sebastian Reyes-Chin-Wo, Richard W. Michelmore, Kazuki Saito, K. Shoji, Miyako Kusano
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-14-113

Systematic analysis of palatal transcriptome to identify cleft palate genes within TGFβ3-knockout mice alleles: RNA-Seq analysis of TGFβ3 Mice
Cited by: 37
Author(s): Ferhat Öztürk, You Li, Xinyuan Zhu, Chittibabu Guda, Ali Nawshad
Software Mentions: 2
Published: almost 12 years ago

10.7717/peerj.6042

Drivers and assemblies of soil eukaryotic microbes among different soil habitat types in a semi-arid mountain in China
Cited by: 9
Author(s): He Zhao, Xuanzhen Li, Zhi‐Ming Zhang, Ye Zhao, Peng Chen, Yiwei Zhu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-41160-x

Endophytic Bacterial Communities Associated with Roots and Leaves of Plants Growing in Chilean Extreme Environments
Cited by: 57
Author(s): Qian Zhang, Jacquelinne J. Acuña, Nitza G. Inostroza, Marı́a de la Luz Mora, Sergio Radic, Michael J. Sadowsky, Milko A. Jorquera
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-42734-5

Native soil microorganisms hinder the soil enrichment with antibiotic resistance genes following manure applications
Cited by: 36
Author(s): Eduardo Pérez-Valera, Martina Kyselková, Engy Ahmed, Frantisek Xaver Jiri Sladecek, Marta Goberna, Dana Elhottová
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.6658

Comparative analysis and characterization of the gut microbiota of four farmed snakes from southern China
Cited by: 21
Author(s): Bing Zhang, Jianke Ren, Daode Yang, Shuoran Liu, Xinguo Gong
Software Mentions: 2
Published: over 5 years ago

10.1186/s13071-017-2579-5

Reptile-associated Borrelia species in the goanna tick (Bothriocroton undatum) from Sydney, Australia
Cited by: 32
Author(s): Jessica L. Panetta, Radek Šíma, Nichola Eliza Davies Calvani, Ondřej Hajdušek, Shona Chandra, Jessica Panuccio, Jan Šlapeta
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50187-z

Impacts of environmental complexity on respiratory and gut microbiome community structure and diversity in growing pigs
Cited by: 30
Author(s): Ameer Megahed, Mohamed Zeineldin, Kaleigh L. Evans, Nidia Maradiaga, Ben Blair, Brian Aldridge, James Lowe
Software Mentions: 2
Published: about 5 years ago

10.1186/s13071-020-04212-0

Transcriptional responses in Parascaris univalens after in vitro exposure to ivermectin, pyrantel citrate and thiabendazole
Cited by: 13
Author(s): Frida Martin, Faruk Dube, Oskar Karlsson Lindsjö, Matthías Eydal, Johan Höglund, Tomas F. Bergström, Eva Tydén
Software Mentions: 2
Published: over 4 years ago

10.1002/mgg3.857

Identification and analysis of genes associated with head and neck squamous cell carcinoma by integrated bioinformatics methods
Cited by: 18
Author(s): Jianhua Yu, Ya Yang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-65907-z

The effect of phytoglobin overexpression on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici)
Cited by: 1
Author(s): Olga Andrzejczak, Chris K. Sørensen, Wei Qing Wang, Sergey I. Kovalchuk, Christina E Hagensen, Ole N. Jensen, Massimiliano Carciofi, Mogens S. Hovmøller, Adelina Rogowska-Wrzesińska, Ian Max Møller, Kim H. Hebelstrup
Software Mentions: 2
Published: over 4 years ago

10.1093/molbev/msu135

How the Mountain Pine Beetle (Dendroctonus ponderosae) Breached the Canadian Rocky Mountains
Cited by: 69
Author(s): Jasmine K. Janes, Yisu Li, Christopher I. Keeling, Macaire Man Saint Yuen, Celia K. Boone, Janice E. K. Cooke, Jöerg Bohlmann, Dezene P. W. Huber, Brent W. Murray, David W. Coltman, Felix A. H. Sperling
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-016-2923-8

Comparative performance of transcriptome assembly methods for non-model organisms
Cited by: 50
Author(s): Xin Huang, Xiaoguang Chen, Peter Armbruster
Software Mentions: 2
Published: over 8 years ago

10.1186/s13100-018-0109-4

Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements
Cited by: 18
Author(s): Robin M. Delahay, Nicola Croxall, Amberley D. Stephens
Software Mentions: 2
Published: almost 7 years ago

10.3390/microorganisms7090333

Microbial Assemblages in Pressurized Antarctic Brine Pockets (Tarn Flat, Northern Victoria Land): A Hotspot of Biodiversity and Activity
Cited by: 19
Author(s): Maria Papale, Angelina Lo Giudice, Antonella Conte, Carmen Rizzo, Alessandro Ciro Rappazzo, Giovanna Maimone, Gabriella Caruso, Rosabruna La Ferla, Maurizio Azzaro, Concetta Gugliandolo, Rodolfo Paranhos, Anderson de Souza Cabral, Vincenzo Romano Spica, Mauro Guglielmin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-72484-8

Complete genome sequence of fish-pathogenic Aeromonas hydrophila HX-3 and a comparative analysis: insights into virulence factors and quorum sensing
Cited by: 13
Author(s): Lan Jin, Yu Chen, Wenge Yang, Zhaohui Qiao, Xiaojun Zhang
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8070973

Association of Phytophthora with Declining Vegetation in an Urban Forest Environment
Cited by: 9
Author(s): Mohammed Y. Khdiar, P.A. Barber, G. Hardy, Chris M. Shaw, Emma J. Steel, Cameron McMains, Treena I. Burgess
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-017-4220-6

An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes
Cited by: 22
Author(s): Nora Hohmann, Marcus A. Koch
Software Mentions: 2
Published: about 7 years ago

10.3390/microorganisms7120624

Environmental DNA Sequencing Reveals a Highly Complex Eukaryote Community in Sansha Yongle Blue Hole, Xisha, South China Sea
Cited by: 7
Author(s): Yueteng Liu, Hui He, Liang Fu, Qian Liu, Zuosheng Yang, Yu Zhen
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12967-019-2065-2

Identification of key DNA methylation-driven genes in prostate adenocarcinoma: an integrative analysis of TCGA methylation data
Cited by: 46
Author(s): Ning Xu, Yupeng Wu, Zhi‐Bin Ke, Yingchun Liang, Hai Cai, Wenting Su, Xuan Tao, Shao‐Hao Chen, Qing‐Shui Zheng, Yong Wei, Xue-Yi Xue
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-015-1708-9

Metabolomic and transcriptomic insights into how cotton fiber transitions to secondary wall synthesis, represses lignification, and prolongs elongation
Cited by: 69
Author(s): John R. Tuttle, Gyoungju Nah, Mary V. Duke, Danny Alexander, Xueying Guan, Qingxin Song, Z. Jeffrey Chen, Brian E. Scheffler, Candace H. Haigler
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-80264-7

Integrated mRNA and miRNA expression profile analysis of female and male gonads in Hyriopsis cumingii
Cited by: 10
Author(s): Yayu Wang, Shenghua Duan, Guiling Wang, Jiale Li
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-82576-8

Digital gene expression analysis of the response to Ralstonia solanacearum between resistant and susceptible tobacco varieties
Cited by: 10
Author(s): Yanyan Li, Lin Wang, Guangwei Sun, Xihong Li, ZhenGuo Chen, Jia‐Xun Feng, Yong Yang
Software Mentions: 2
Published: almost 4 years ago

10.3390/mi12010049

Design and Clinical Application of an Integrated Microfluidic Device for Circulating Tumor Cells Isolation and Single-Cell Analysis
Cited by: 7
Author(s): Mingxin Xu, Wenwen Liu, Kun Zou, Wei Song, Xinri Zhang, Encheng Li, Qi Wang
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-86914-8

Network pharmacology and molecular docking study on the active ingredients of qidengmingmu capsule for the treatment of diabetic retinopathy
Cited by: 14
Author(s): Mingxu Zhang, Jiawei Yang, Xianxian Zhao, Ying Zhao, Siquan Zhu
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-018-0585-2

Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces
Cited by: 89
Author(s): Nitin Kumar Singh, Jason M. Wood, Fathi Karouia, Kasthuri Venkateswaran
Software Mentions: 2
Published: about 6 years ago

10.1002/mbo3.725

Comparative metagenomics of the gut microbiota in wild greylag geese (<i>Anser anser</i>) and ruddy shelducks (<i>Tadorna ferruginea</i>)
Cited by: 13
Author(s): Wang Wen, Sisi Zheng, Laixing Li, Yongsheng Yang, Yingbao Liu, Aizhen Wang, Kirill Sharshov, Yao Li
Software Mentions: 2
Published: about 6 years ago

10.1002/mbo3.726

Characterization of the bacterial community composition in water of drinking water production and distribution systems in Flanders, Belgium
Cited by: 15
Author(s): Ado Van Assche, Sam Crauwels, Jos De Brabanter, Kris Willems, Bart Lievens
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-96373-w

An immune cell infiltration-related gene signature predicts prognosis for bladder cancer
Cited by: 12
Author(s): Hualin Chen, Yang Pan, Xiaoxiang Jin, Gang Chen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-98948-z

Tanshinone IIA affects the malignant growth of Cholangiocarcinoma cells by inhibiting the PI3K-Akt-mTOR pathway
Cited by: 5
Author(s): Huayuan Liu, Caiyun Liu, Mengya Wang, Dongxu Sun, Pengcheng Zhu, Ping Zhang, Xueying Tan, Guangjun Shi
Software Mentions: 2
Published: about 3 years ago

10.1002/mbo3.769

Determination of microbiological characteristics in the digestive tract of different ruminant species
Cited by: 12
Author(s): Tian Zhang, Yingyu Mu, Deqing Zhang, Xueyan Lin, Zhonghua Wang, Qiuling Hou, Yun Wang, Zhiyong Hu
Software Mentions: 2
Published: almost 6 years ago

10.3390/toxins11010049

Gut Microbiota Profiling of Aflatoxin B1-Induced Rats Treated with Lactobacillus casei Shirota
Cited by: 22
Author(s): Winnie-Pui-Pui Liew, Mohd Sabran, Leslie Thian Lung Than
Software Mentions: 2
Published: almost 6 years ago

10.1002/mbo3.673

High‐production dairy cattle exhibit different rumen and fecal bacterial community and rumen metabolite profile than low‐production cattle
Cited by: 33
Author(s): Yingyu Mu, Xueyan Lin, Zhonghua Wang, Qiuling Hou, Yun Wang, Zhiyong Hu
Software Mentions: 2
Published: about 6 years ago

10.1111/1751-7915.13510

Modified clays alter diversity and respiration profile of microorganisms in long‐term hydrocarbon and metal co‐contaminated soil
Cited by: 10
Author(s): Bhabananda Biswas, Albert L. Juhasz, Mohammad Mahmudur Rahman, Ravi Naidu
Software Mentions: 2
Published: about 5 years ago

10.1128/mBio.02962-19

The Aspergillus fumigatus Phosphoproteome Reveals Roles of High-Osmolarity Glycerol Mitogen-Activated Protein Kinases in Promoting Cell Wall Damage and Caspofungin Tolerance
Cited by: 23
Author(s): Eliciane Cevolani Mattos, Lilian Pereira Silva, Clara Valero, Patrícia Alves de Castro, Thaila Fernanda dos Reis, Laryssa Freitas Ribeiro, Mark R. Marten, Rafael Silva‐Rocha, Cauã Antunes Westmann, Carlos Henrique Tomich de Paula da Silva, Carlton A. Taft, Narjes Al-Furaiji, Michael Bromley, Uffe Hasbro Mortensen, J. Philipp Benz, Neil Andrew Brown, Gustavo H. Goldman
Software Mentions: 2
Published: over 4 years ago

10.1128/mBio.01011-21

Comparative Biofilm Assays Using Enterococcus faecalis OG1RF Identify New Determinants of Biofilm Formation
Cited by: 14
Author(s): Julia L. E. Willett, Jennifer L. Dale, Lucy M. Kwiatkowski, Jennifer Powers, Michelle L. Korir, Rhea Kohli, Aaron M. T. Barnes, Gary M. Dunny
Software Mentions: 2
Published: over 3 years ago

10.3390/metabo11080490

Exploring Genotype-by-Environment Interactions of Chemical Composition of Raspberry by Using a Metabolomics Approach
Cited by: 10
Author(s): Sara Durán-Soria, Delphine M. Pott, Frank Will, Jennifer Mesa‐Marín, M. Lewandowski, Karolina Celejewska, A. Masny, E. Żurawicz, Nikki Jennings, Anita Sønsteby, Erika Krüger, Sonia Osorio
Software Mentions: 2
Published: over 3 years ago

10.1128/mSystems.00131-18

Finer-Scale Phylosymbiosis: Insights from Insect Viromes
Cited by: 23
Author(s): Brittany A. Leigh, Sarah R. Bordenstein, Andrew Brooks, Aram Mikaelyan, Seth R. Bordenstein
Software Mentions: 2
Published: about 6 years ago

10.1042/BSR20191612

Bioinformatics-based discovery of PYGM and TNNC2 as potential biomarkers of head and neck squamous cell carcinoma
Cited by: 18
Author(s): Yu Jin, Ya Yang
Software Mentions: 2
Published: over 5 years ago

10.3390/biomedicines9040332

Functional Flow Cytometric Assay for Reliable and Convenient Heparin-Induced Thrombocytopenia Diagnosis in Daily Practice
Cited by: 7
Author(s): B. Tardy, Aurélie Montmartin, Michèle Piot, Martine Alhenc‐Gelas, Philippe Nguyên, Ismaı̈l Elalamy, Andreas Greinacher, Emmanuel de Maistre, Dominique Lasne, Marie‐Hélène Horellou, Grégoire Le Gal, Thomas Lecompte, Bernard Tardy
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/9809347

The Expression and Potential Role of Tubulin Alpha 1b in Wilms’ Tumor
Cited by: 7
Author(s): Qiong-Qian Xu, Li-Ting Qin, Song-Wu Liang, Peng Chen, Jin-Han Gu, Zhi‐Guang Huang, Xia Yang, Gao Li, Shi‐Shuo Wang, Yige Luo, Lin-Le-Yi Liu, Jun Wang, Junyu Lin, Jiabo Chen
Software Mentions: 2
Published: about 4 years ago

10.1007/s00401-018-1900-5

Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy
Cited by: 43
Author(s): Mariet Allen, Xue Wang, Daniel J. Serie, Samantha L. Strickland, Jeremy D. Burgess, Shunsuke Koga, Curtis S. Younkin, Thuy Nguyen, Kimberly G. Malphrus, Sarah Lincoln, Melissa Alamprese, Kuixi Zhu, Rui Chang, Minerva M. Carrasquillo, Naomi Kouri, Melissa E. Murray, Joseph S. Reddy, Cory C. Funk, Nathan D. Price, Todd E. Golde, Steven G. Younkin, Yan W. Asmann, Julia E. Crook, Dennis W. Dickson, Nilüfer Ertekin-Taner
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/1086792

Transcriptomic Analysis of Glioma Based on IDH Status Identifies ACAA2 as a Prognostic Factor in Lower Grade Glioma
Cited by: 5
Author(s): Chenxing Wu, Hongwang Song, Xiaojun Fu, Shouwei Li, Tao Jiang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/9601876

Serum miR-1228-3p and miR-181a-5p as Noninvasive Biomarkers for Non-Small Cell Lung Cancer Diagnosis and Prognosis
Cited by: 21
Author(s): Weixiao Xue, Meng-Yu Zhang, Rui Li, Xiao Liu, Yunhong Yin, Yi-Qing Qu
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.03289

Comparative Evaluation of Microbiota Engraftment Following Fecal Microbiota Transfer in Mice Models: Age, Kinetic and Microbial Status Matter
Cited by: 66
Author(s): Tiphaine Le Roy, Jean Debédat, Florian Marquet, Carla Da-Cunha, Farid Ichou, Michèle Guerre-Millo, Nathalie Kapel, Judith Aron‐Wisnewsky, Karine Clément
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.02126

Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota
Cited by: 65
Author(s): Wei Yan, Chang Sun, Jiangxia Zheng, Chaoliang Wen, Congliang Ji, Dexiang Zhang, Yonghua Chen, Zhuocheng Hou, Ning Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.03104

Genomic Analysis of Putative Virulence Factors Affecting Cytotoxicity of Cronobacter
Cited by: 8
Author(s): Jinghua Cui, Jinrui Hu, Xin Du, Chao Yan, Guanhua Xue, Shaoli Li, Zhigang Cui, Hua Huang, Jing Yuan
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.01796

Biases in Prokaryotic Community Amplicon Sequencing Affected by DNA Extraction Methods in Both Saline and Non-saline Soil
Cited by: 12
Author(s): Kehui Xie, Yong Deng, Xuze Zhang, Xueting Wang, Guangbo Kang, Liang Bai, He Huang
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.00666

Partitioning of Fungal Endophyte Assemblages in Root-Parasitic Plant Cynomorium songaricum and Its Host Nitraria tangutorum
Cited by: 27
Author(s): Jin‐Long Cui, Vinod Vijayakumar, Gang Zhang
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/8820089

Identification of Three Significant Genes Associated with Immune Cells Infiltration in Dysfunctional Adipose Tissue-Induced Insulin-Resistance of Obese Patients via Comprehensive Bioinformatics Analysis
Cited by: 2
Author(s): Mengen Zhai, Peipei Luan, Yefei Shi, Bo Li, Jianhua Kang, Fan Hu, Mingjie Li, Lei Du, Donglei Zhou, Weixia Jian, Wenhui Peng
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2017.00750

Microbial Community Response on Wastewater Discharge in Boreal Lake Sediments
Cited by: 22
Author(s): Jatta Saarenheimo, Sanni L. Aalto, Antti J. Rissanen, Marja Tiirola
Software Mentions: 2
Published: over 7 years ago

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