Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: TipDatingBeast

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/TipDatingBeast

Using Tip Dates with Phylogenetic Trees in BEAST
9 versions
Latest release: almost 5 years ago
176 downloads last month

Papers Mentioning TipDatingBeast 9

10.1128/mSphere.00056-20

Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America
Cited by: 19
Author(s): Elizabeth A. Miller, Ehud Elnekave, Cristian Flores-Figueroa, Abigail Johnson, Ashley Kearney, Jeannette Muñoz-Aguayo, Kaitlin A. Tagg, Lorelee Tschetter, Bonnie Weber, Céline Nadon, Dave Boxrud, Randall S. Singer, Jason P. Folster, Timothy J. Johnson
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pntd.0008046

Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages
Cited by: 15
Author(s): Haoqiu Wang, Chao Yang, Sun Zhou, Wei Zheng, Wei Zhang, Hua Yu, Yarong Wu, Xavier Didelot, Ruifu Yang, Jinren Pan, Yu‐Jun Cui
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.01077

The Gene Flow Direction of Geographically Distinct Phytophthora infestans Populations in China Corresponds With the Route of Seed Potato Exchange
Cited by: 6
Author(s): Fangluan Gao, Changsheng Chen, Benjin Li, Qiyong Weng, Qinghe Chen
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-019-40168-7

Evolutionary history and palaeoecology of brown bear in North-East Siberia re-examined using ancient DNA and stable isotopes from skeletal remains
Cited by: 25
Author(s): Alba Rey‐Iglesia, Ana García-Vázquez, Eve C. Treadaway, Johannes van der Plicht, Gennady Baryshnikov, Paul Szpak, Hervé Bocherens, Г. Г. Боескоров, Eline D. Lorenzen
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01137

A Large-Scale Outbreak of Echovirus 30 in Gansu Province of China in 2015 and Its Phylodynamic Characterization
Cited by: 12
Author(s): Jianhua Chen, Zhaoxia Han, Haizhuo Wu, Wenbo Xu, Deshan Yu, Yong Zhang
Software Mentions: 2
Published: over 4 years ago

10.1098/rspb.2021.0782

Divergent regional evolutionary histories of a devastating global amphibian pathogen
Cited by: 8
Author(s): Andrew P. Rothstein, Allison Q. Byrne, Roland A. Knapp, Cheryl J. Briggs, Jamie Voyles, Corinne L. Richards‐Zawacki, Erica Bree Rosenblum
Software Mentions: 2
Published: about 3 years ago

10.7554/eLife.68612

Ancient viral genomes reveal introduction of human pathogenic viruses into Mexico during the transatlantic slave trade
Cited by: 17
Author(s): Axel A Guzmán-Solís, Viridiana Villa-Islas, Miriam Bravo-Lopez, Marcela Sandoval-Velasco, Julie K. Wesp, Jorge Gómez-Valdés, María de la Luz Moreno-Cabrera, Alejandro Meraz, Gabriela Solís‐Pichardo, Peter Schaaf, Benjamin R. tenOever, Daniel Blanco-Melo, María C. Ávila Arcos
Software Mentions: 1
Published: about 3 years ago

10.1038/srep42639

DNA analysis of a 30,000-year-old Urocitellus glacialis from northeastern Siberia reveals phylogenetic relationships between ancient and present-day arctic ground squirrels
Cited by: 11
Author(s): Marina Faerman, Gila Kahila Bar‐Gal, Elisabetta Boaretto, Г. Г. Боескоров, Nikolai E. Dokuchaev, Oleg A. Ermakov, Fedor N. Golenishchev, С. В. Губин, Eugenia Mintz, Evgeniy Simonov, В. Л. Сурин, С. В. Титов, О. Г. Занина, Н. А. Формозов
Software Mentions: 1
Published: over 7 years ago

10.1093/ve/veaa005

Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host
Cited by: 4
Author(s): Brittany RifeMagalis, Samantha L. Strickland, Stephen D Shank, Patrick Autissier, Alexandra Schuetz, Pasiri Sithinamsuwan, Sukalaya Lerdlum, James Fletcher, Mark de Souza, Jintanat Ananworanich, Victor Valcour, Kenneth C. Williams, Sergei L. Kosakovsky Pond, Silvia Ratto‐Kim, Marco Salemi
Software Mentions: 1
Published: over 4 years ago