Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SmartSVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SmartSVA

Fast and Robust Surrogate Variable Analysis
4 versions
Latest release: over 7 years ago
232 downloads last month

Papers Mentioning SmartSVA 11

In utero and childhood exposure to tobacco smoke and multi-layer molecular signatures in children
Cited by: 19
Author(s): Marta Vives-Usano, Carles Hernández-Ferrer, Léa Maitre, Carlos Ruiz‐Arenas, Sandra Andrušaitytė, Eva Borràs, Ángel Carracedo, Maribel Casas, Leda Chatzi, Muireann Coen, Xavier Estivill, Juan R. González, Kristine B. Gützkow, Hector C. Keun, Chung-Ho E Lau, Solène Cadiou, Johanna Lepeule, Dan Mason, Inés Quintela, Oliver Robinson, Eduard Sabidó, Gillian Santorelli, Per E. Schwarze, Alexandros P. Siskos, Rémy Slama, Marina Vafeiadi, Eulàlia Martı́, Martine Vrijheid, Mariona Bustamante
Software Mentions: 14
Published: over 4 years ago

10.1186/s13059-020-02001-7

Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing
Cited by: 7
Author(s): Jinyan Huang, Lijun Bai, Bowen Cui, Liang Wu, Liwen Wang, Zhiyin An, Shulin Ruan, Yue Yu, Xianyang Zhang, Jun Chen
Software Mentions: 13
Published: over 4 years ago

10.1016/j.ebiom.2018.04.010

Genomic Response to Vitamin D Supplementation in the Setting of a Randomized, Placebo-Controlled Trial
Cited by: 28
Author(s): Antonio J. Berlanga‐Taylor, Katharine Plant, Andrew Dahl, Evelyn Lau, Michael Hill, David Sims, Andreas Heger, Jonathan Emberson, Jane Armitage, Robert Clarke, Julian C. Knight
Software Mentions: 11
Published: over 6 years ago

10.3389/fphys.2021.660906

Genome-Wide DNA Methylation Changes Associated With High-Altitude Acclimatization During an Everest Base Camp Trek
Cited by: 6
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Trevor A. Day, Tom D. Brutsaert, Abigail W. Bigham
Software Mentions: 8
Published: over 3 years ago

10.1038/srep28657

Pubertal development in healthy children is mirrored by DNA methylation patterns in peripheral blood
Cited by: 57
Author(s): Kristian Almstrup, Marie Johansen, Alexander Busch, Casper P Hagen, John Nielsen, Jørgen Holm Petersen, Anders Juul
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-020-69725-1

Altered mechanisms of genital development identified through integration of DNA methylation and genomic measures in hypospadias
Cited by: 10
Author(s): Melissa A. Richard, Pagna Sok, Stephen Canon, Wendy N. Nembhard, Austin L. Brown, Erin C. Peckham‐Gregory, Minh Ton, Erik A. Ehli, Noah A. Kallsen, Stephen Peyton, Gareth E. Davies, Ashay Patel, Ismael Zamilpa, Charlotte A. Hobbs, Michael E. Scheurer, Philip J. Lupo
Software Mentions: 4
Published: over 4 years ago

10.1186/s13148-021-01004-w

Profile of copper-associated DNA methylation and its association with incident acute coronary syndrome
Cited by: 15
Author(s): Pinpin Long, Qiuhong Wang, Yizhi Zhang, Xiaoyan Zhu, Kuai Yu, Haijing Jiang, Xuezhen Liu, Min Zhou, Yu Yuan, Kang Liu, Jing Jiang, Xiaomin Zhang, Meian He, Huan Guo, Weihong Chen, Jing Yuan, Long Cheng, Liming Liang, Tangchun Wu
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12864-017-3808-1

Fast and robust adjustment of cell mixtures in epigenome-wide association studies with SmartSVA
Cited by: 51
Author(s): Jun Chen, Ehsan Behnam, Jinyan Huang, Miriam F. Moffatt, Daniel J. Schaid, Liming Liang, Xihong Lin
Software Mentions: 3
Published: over 7 years ago

10.1186/s13148-021-01032-6

DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother–newborn pairs
Cited by: 25
Author(s): Richard Xu, Xiumei Hong, Boyang Zhang, Wanyu Huang, Wenpin Hou, Guoying Wang, Xiaobin Wang, Takeru Igusa, Liming Liang, Hongkai Ji
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-021-02418-8

2dFDR: a new approach to confounder adjustment substantially increases detection power in omics association studies
Cited by: 2
Author(s): Sangyoon Yi, Xianyang Zhang, Lu Yang, Jinyan Huang, Yuanhang Liu, Chen Wang, Daniel J. Schaid, Jun Chen
Software Mentions: 3
Published: over 3 years ago

10.3390/nu12123697

DNA Methylation Profiles of Vegans and Non-Vegetarians in the Adventist Health Study-2 Cohort
Cited by: 7
Author(s): Fayth L. Miles, Andrew Mashchak, Valery Filippov, Michael J. Orlich, Penelope J. Duerksen-Hughes, Xin Chen, Charles Wang, Kimberly D. Siegmund, Gary E. Fraser
Software Mentions: 2
Published: almost 4 years ago