Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02001-7

https://doi.org/10.1186/s13059-020-02001-7

Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing

Cited by: 7
Author(s): Jinyan Huang, Lijun Bai, Bowen Cui, Liang Wu, Liwen Wang, Zhiyin An, Shulin Ruan, Yue Yu, Xianyang Zhang, Jun Chen
Published: over 4 years ago

Software Mentions 13

bioconductor: ComplexHeatmap

Make Complex Heatmaps
Papers that mentioned: 565

bioconductor: GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328

bioconductor: IHW

Independent Hypothesis Weighting
Papers that mentioned: 8

bioconductor: minfi

Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506

bioconductor: qvalue

Q-value estimation for false discovery rate control
Papers that mentioned: 248

bioconductor: swfdr

Estimation of the science-wise false discovery rate and the false discovery rate conditional on covariates
Papers that mentioned: 2

cran: adaptMT

Adaptive P-Value Thresholding for Multiple Hypothesis Testing with Side Information
Papers that mentioned: 1

cran: cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298

cran: FDRreg

False discovery rate regression
Papers that mentioned: 3

cran: ggforce

Accelerating 'ggplot2'
Papers that mentioned: 24

cran: ggpubr

'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856

cran: SmartSVA

Fast and Robust Surrogate Variable Analysis
Papers that mentioned: 11

cran: UpSetR

A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319