cran: Seurat | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2021.707404

Thymic Egress Is Regulated by T Cell-Derived LTβR Signal and via Distinct Thymic Portal Endothelial Cells
Cited by: 2
Author(s): Huan Xia, Shaobo Zhong, Yongliang Zhao, Boyang Ren, Zhongnan Wang, Yi Shi, Qian Chai, Xiaoqun Wang, Mingzhao Zhu
Software Mentions: 1
Published: over 3 years ago

10.1002/path.5360

Clarin‐1 expression in adult mouse and human retina highlights a role of Müller glia in Usher syndrome
Cited by: 14
Author(s): Lei Xu, Susan Bolch, Clayton Santiago, Frank M. Dyka, Omar Akil, Ekaterina S. Lobanova, Yuchen Wang, Kirill A. Martemyanov, William W. Hauswirth, W. Clay Smith, James T. Handa, Seth Blackshaw, John D. Ash, Astra Dinculescu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.690201

Infiltration by CXCL10 Secreting Macrophages Is Associated With Antitumor Immunity and Response to Therapy in Ovarian Cancer Subtypes
Cited by: 22
Author(s): Laura Ardighieri, Francesco Missale, Mattia Bugatti, Luisa Benerini Gatta, Irene Pezzali, Matilde Monti, Stefano Gottardi, Laura Zanotti, Eliana Bignotti, Antonella Ravaggi, Germana Tognon, Franco Odicino, Stefano Calza, Yoann Missolo-Koussou, Carola H. Ries, Julie Helft, William Vermi
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12123774

GAS2L1 Is a Potential Biomarker of Circulating Tumor Cells in Pancreatic Cancer
Cited by: 9
Author(s): Lei Zhu, Kejia Kan, Johanna L. Grün, Bárbara Hissa, Cui Yang, Balázs Györffy, Sonja Loges, Christoph Reißfelder, Sebastian Schölch
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2020.01707

Characterization of the Bronchoalveolar Lavage Fluid by Single Cell Gene Expression Analysis in Healthy Dogs: A Promising Technique
Cited by: 12
Author(s): Aline Fastrès, Dimitri Pirottin, Laurence Fiévez, Thomas Marichal, Christophe Desmet, Cécile Clercx
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.699722

Sclerosing Sialadenitis Is Associated With Salivary Gland Hypofunction and a Unique Gene Expression Profile in Sjögren’s Syndrome
Cited by: 5
Author(s): Hongen Yin, Thomas Pranzatelli, Benjamin French, Nan Zhang, Blake M. Warner, John A. Chiorini, Nidcd, Nidcr Genomics
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-019-2742-4

VPAC: Variational projection for accurate clustering of single-cell transcriptomic data
Cited by: 7
Author(s): Shengquan Chen, Kui Hua, Henggang Cui, Rui Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13075-021-02531-w

Circulating mature granzyme B+ T cells distinguish Crohn’s disease-associated axial spondyloarthritis from axial spondyloarthritis and Crohn’s disease
Cited by: 10
Author(s): Adam R. Lefferts, Emilie Regner, Andrew Stahly, Becky O’Rourke, Mark E. Gerich, Blair Fennimore, Frank I. Scott, Alison Freeman, Kirtly Parker Jones, Kristine A. Kuhn
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2020.108222

Parallel Single-Cell RNA-Seq and Genetic Recording Reveals Lineage Decisions in Developing Embryoid Bodies
Cited by: 13
Author(s): Ik Soo Kim, Jingyi Wu, Gilbert J. Rahme, Sofia Battaglia, Atray Dixit, Elizabeth Gaskell, Huidong Chen, Luca Pinello, B Bernstein
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1007445

SCMarker: Ab initio marker selection for single cell transcriptome profiling
Cited by: 30
Author(s): Fang Wang, Shaoheng Liang, Tapsi Kumar, Nicholas E. Navin, Ken Chen
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.559555

Single-Cell Transcriptome Profiling of Immune Cell Repertoire of the Atlantic Cod Which Naturally Lacks the Major Histocompatibility Class II System
Cited by: 20
Author(s): Naomi Croft Guslund, Monica Hongrø Solbakken, Marine S. O. Brieuc, Sissel Jentoft, Kjetill S. Jakobsen, Shuo‐Wang Qiao
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2021.665773

Transcriptional Changes in CD16+ Monocytes May Contribute to the Pathogenesis of COVID-19
Cited by: 19
Author(s): Vanessa Chilunda, Pablo Martínez-Aguado, Li C. Xia, Laura Cheney, Aniella Murphy, Veronica Veksler, Vanessa Ruiz, Tina M. Calderon, Joan W. Berman
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.611749

Identification of Pro-Fibrotic Macrophage Populations by Single-Cell Transcriptomic Analysis in West Highland White Terriers Affected With Canine Idiopathic Pulmonary Fibrosis
Cited by: 12
Author(s): Aline Fastrès, Dimitri Pirottin, Laurence Fiévez, Alexandru-Cosmin Tutunaru, Géraldine Bolen, Anne-Christine Merveille, Thomas Marichal, Christophe Desmet, Cécile Clercx
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.55320

A new protocol for single-cell RNA-seq reveals stochastic gene expression during lag phase in budding yeast
Cited by: 36
Author(s): Abbas Jariani, Lieselotte Vermeersch, Bram Cerulus, Gemma Perez-Samper, Karin Voordeckers, Thomas Van Brussel, Bernard Thienpont, Diether Lambrechts, Kevin J. Verstrepen
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.53377

Tailless/TLX reverts intermediate neural progenitors to stem cells driving tumourigenesis via repression of asense/ASCL1
Cited by: 10
Author(s): Anna E Hakes, Andrea H. Brand
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-020-01341-1

From whole-mount to single-cell spatial assessment of gene expression in 3D
Cited by: 76
Author(s): Lisa N. Waylen, Hieu T. Nim, Luciano G. Martelotto, Mirana Ramialison
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-1083-1

Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses
Cited by: 4
Author(s): Asiel A. Benitez, Sara Khalil-Agüero, Anjali Nandakumar, Namita Gupta, Wen Zhang, Gurinder S. Atwal, Andrew J. Murphy, Matthew A. Sleeman, Sokol Haxhinasto
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.66078

Single-cell RNA analysis identifies pre-migratory neural crest cells expressing markers of differentiated derivatives
Cited by: 17
Author(s): Ezra Lencer, Rytis Prekeris, Kristin Artinger
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21176143

Conventional Co-Housing Modulates Murine Gut Microbiota and Hematopoietic Gene Expression
Cited by: 7
Author(s): Jichun Chen, Shuling Zhang, Xingmin Feng, Zhijie Wu, Wendy Dubois, Vishal Thovarai, Sonia Ahluwalia, Shaojian Gao, Jinguo Chen, Tyler J. Peat, Shurjo K. Sen, Giorgio Trinchieri, Neal S. Young, Beverly A. Mock
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.60005

An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution
Cited by: 37
Author(s): Aubrey G.A. Howard, Phillip A Baker, Rodrigo Ibarra‐García‐Padilla, Joshua Moore, Lucia J Rivas, James J. Tallman, Eileen W. Singleton, Jessa L Westheimer, Julia A Corteguera, Rosa A. Uribe
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.59003

Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala
Cited by: 38
Author(s): Timothy P. O’Leary, Kaitlin E Sullivan, Lihua Wang, Jody Clements, Andrew Lemire, Mark S. Cembrowski
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-021-01763-5

βA1-crystallin regulates glucose metabolism and mitochondrial function in mouse retinal astrocytes by modulating PTP1B activity
Cited by: 9
Author(s): Sayan Ghosh, Haitao Liu, Meysam Yazdankhah, Nadezda A. Stepicheva, Peng Shang, Tanuja Vaidya, Stacey Hose, Urvi Gupta, Michael Calderon, Ming Hu, Archana Padmanabhan Nair, Joseph Weiss, Christopher Scott Fitting, Imran Ahmed Bhutto, Santosh Gopi Krishna Gadde, Naveen Kumar Naik, Chaitra Jaydev, Gerard A. Lutty, James T. Handa, Ashwath Jayagopal, Jiang Qian, J Sahel, Dhivyaa Rajasundaram, Yuri V. Sergeev, J. Samuel Zigler, Swaminathan Sethu, Simon C. Watkins, Arkasubhra Ghosh, Debasish Sinha
Software Mentions: 1
Published: over 3 years ago

10.1128/AAC.00602-21

Key Metabolic Enzymes Involved in Remdesivir Activation in Human Lung Cells
Cited by: 32
Author(s): Ruidong Li, Albert Liclican, Yili Xu, Jared Pitts, Congrong Niu, Jingyu Zhang, Cynthia Kim, Xiaofeng Zhao, Daniel Soohoo, Darius Babusis, Qin Yue, Bin Ma, Bernard P. Murray, Raju Subramanian, Xuping Xie, Jing Zou, John P. Bilello, Li Li, Brian E. Schultz, Roman Sakowicz, Bill J. Smith, Pei–Yong Shi, Eisuke Murakami, Joy Y. Feng
Software Mentions: 1
Published: over 3 years ago

10.1098/rsob.200162

Expression of SARS-CoV-2 receptor ACE2 and the protease TMPRSS2 suggests susceptibility of the human embryo in the first trimester
Cited by: 68
Author(s): Bailey A. T. Weatherbee, David M. Glover, Magdalena Zernicka‐Goetz
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2021.590377

Single-Cell Transcriptional Profiling Reveals Sex and Age Diversity of Gene Expression in Mouse Endothelial Cells
Cited by: 12
Author(s): Xianxi Huang, Wen‐Jun Shen, Stefan Veizades, Grace Liang, Nazish Sayed, Patricia K. Nguyen
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pgen.1009498

DNA methylation patterns expose variations in enhancer-chromatin modifications during embryonic stem cell differentiation
Cited by: 6
Author(s): Adi Alajem, Hava Roth, Sofia Ratgauzer, Danny Bavli, Alex Motzik, Shlomtzion Lahav, Itay Peled, Oren Ram
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.51576

Functionally heterogeneous human satellite cells identified by single cell RNA sequencing
Cited by: 66
Author(s): Emilie Barruet, Steven Garcia, Katharine Striedinger, Jake Wu, Solomon Lee, Lauren Byrnes, Alvin Wong, Xinwei Sun, Stanley Tamaki, Andrew S. Brack, Jason H. Pomerantz
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1009355

Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons
Cited by: 12
Author(s): Jia Li, Lei Sun, Xue-Liang Peng, Xiaoming Yu, Shao-Jun Qi, Zhi John Lu, Jing‐Dong J. Han, Qin Shen
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2018.04.066

Combining NGN2 Programming with Developmental Patterning Generates Human Excitatory Neurons with NMDAR-Mediated Synaptic Transmission
Cited by: 151
Author(s): Ralda Nehme, Emanuela Zuccaro, Sulagna Ghosh, Chenchen Li, J. L. Sherwood, Olli Pietiläinen, Lindy E. Barrett, Francesco Limone, Kathleen A. Worringer, Sravya Kommineni, Ying Zang, Davide Cacchiarelli, Alex Meissner, Rolf Adolfsson, Stephen J. Haggarty, Jon M. Madison, Matthias Müller, Paola Arlotta, Zhanyan Fu, Guoping Feng, Kevin Eggan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1008630

Deconstructing cerebellar development cell by cell
Cited by: 28
Author(s): Max J. van Essen, Samuel Nayler, Esther B. E. Becker, John R. Jacob
Software Mentions: 1
Published: over 4 years ago

10.1136/annrheumdis-2018-213764

NFIL3 mutations alter immune homeostasis and sensitise for arthritis pathology
Cited by: 18
Author(s): Susan Schlenner, Emanuela Pasciuto, Vasiliki Lagou, Oliver T. Burton, Teresa Prezzemolo, Steffie Junius, Carlos P. Roca, Cyril Seillet, Cynthia Louis, James Dooley, Kylie Luong, Erika Van Nieuwenhove, Ian P. Wicks, Gabrielle T. Belz, Stéphanie Humblet-Baron, Carine Wouters, Adrian Liston
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.60388

Regulation of dynamic pigment cell states at single-cell resolution
Cited by: 32
Author(s): Margherita Perillo, Nathalie Oulhen, Stephany Foster, Maxwell Spurrell, Cristina Calestani, Gary M. Wessel
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1007589

Somatic inactivating PTPRJ mutations and dysregulated pathways identified in canine malignant melanoma by integrated comparative genomic analysis
Cited by: 46
Author(s): William P.D. Hendricks, Victoria Zismann, Karthigayini Sivaprakasam, Christophe Legendre, Kelsey Poorman, Waibhav Tembe, Nieves Perdigones, Jeffrey Kiefer, Winnie S. Liang, Valerie DeLuca, Mitchell Stark, Alison L. Ruhe, Roe E. Froman, Nicholas S. Duesbery, Megan Washington, Jessica Aldrich, Mark W. Neff, Matthew J. Huentelman, Nicholas K. Hayward, Kevin M. Brown, Douglas H. Thamm, Gerald Post, Chand Khanna, Barbara J. Davis, Matthew Breen, Aleksander Sekulic, Jeffrey M. Trent
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20225773

Contribution of Single-Cell Transcriptomics to the Characterization of Human Spermatogonial Stem Cells: Toward an Application in Male Fertility Regenerative Medicine?
Cited by: 5
Author(s): Anne-Sophie Gille, Clémentine Lapoujade, Jean-Philippe Wolf, Pierre Fouchet, Virginie Barraud-Lange
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.40315

Hedgehog signaling patterns the oral-aboral axis of the mandibular arch
Cited by: 48
Author(s): Jingyue Xu, Han Liu, Yu Lan, Mike Adam, David E. Clouthier, S. Steven Potter, Rulang Jiang
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10456-020-09727-9

Heterogeneity and chimerism of endothelial cells revealed by single-cell transcriptome in orthotopic liver tumors
Cited by: 23
Author(s): Qi Zhao, Maria del Pilar Molina-Portela, Asma Parveen, Alexander P. Adler, Christina Adler, Eva-Maria Hock, Wei Wang, Min Ni, Yi Wei, Gurinder S. Atwal, Markus Mohrs, Gavin Thurston, Alexandra Eichten
Software Mentions: 1
Published: over 4 years ago

10.3390/cells9020438

Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations
Cited by: 31
Author(s): Andrew P. Voigt, Elaine M. Binkley, Miles J. Flamme-Wiese, Siyuan Zeng, Adam P. DeLuca, Todd E. Scheetz, Budd A. Tucker, Robert F. Mullins, Edwin M. Stone
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0206785

Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq
Cited by: 80
Author(s): Andrew Shih, Andrew Menzin, Jill Whyte, John L. Lovecchio, Anthony Liew, Houman Khalili, Tawfiqul Bhuiya, Peter K. Gregersen, Annette T. Lee
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.68394

Fine-tuned repression of Drp1-driven mitochondrial fission primes a ‘stem/progenitor-like state’ to support neoplastic transformation
Cited by: 6
Author(s): Brian Spurlock, Danitra Parker, Malay Kumar Basu, Anita B. Hjelmeland, Sajina Gc, Shanrun Liu, Gene P. Siegal, Alan Gunter, Aida Moran, Kasturi Mitra
Software Mentions: 1
Published: about 3 years ago

10.3389/fendo.2019.00590

Single Cell Sequencing of the Pineal Gland: The Next Chapter
Cited by: 6
Author(s): Steven L. Coon, Cong Fu, Stephen W. Hartley, Lynne A. Holtzclaw, Joseph C. Mays, Michael C. Kelly, Matthew W. Kelley, James C. Mullikin, Martin F. Rath, Luis Savastano, David C. Klein
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0230295

The SARS-CoV-2 receptor ACE2 expression of maternal-fetal interface and fetal organs by single-cell transcriptome study
Cited by: 296
Author(s): Mengmeng Li, Liang Chen, Jingxiao Zhang, Chenglong Xiong, Xiangjie Li
Software Mentions: 1
Published: over 4 years ago

10.1152/ajplung.00062.2019

GDF15 is an epithelial-derived biomarker of idiopathic pulmonary fibrosis
Cited by: 58
Author(s): Yingze Zhang, Mao Jiang, Mehdi Nouraie, M. Roth, Tracy Tabib, Spencer Winters, Xiaoping Chen, John Sembrat, Yanxia Chu, Nayra Cárdenes, Rubin M. Tuder, Erica L. Herzog, Changwan Ryu, Mauricio Rojas, Robert Lafyatis, Kevin F. Gibson, John F. McDyer, Daniel J. Kass, Jonathan K. Alder
Software Mentions: 1
Published: about 5 years ago

10.3390/cells10092265

Loss of Ubiquitin Carboxy-Terminal Hydrolase L1 Impairs Long-Term Differentiation Competence and Metabolic Regulation in Murine Spermatogonial Stem Cells
Cited by: 11
Author(s): Whitney Alpaugh, Anna Voigt, Rkia Dardari, Lin Su, Iman Al Khatib, Wisoo Shin, Taylor Goldsmith, Krysta M. Coyle, Lin Tang, Timothy E. Shutt, Claudia Klein, Jeff Biernaskie, Ina Dobrinski
Software Mentions: 1
Published: about 3 years ago

10.3389/fcell.2021.689469

Single-Cell Transcriptomics Reveals Endothelial Plasticity During Diabetic Atherogenesis
Cited by: 22
Author(s): Guizhen Zhao, Haocheng Lu, Yu-Hao Liu, Yang Zhao, Tianqing Zhu, Minerva T. Garcia-Barrio, Y Eugene Chen, Jifeng Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2020.00114

Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro
Cited by: 13
Author(s): Violeta Mashkaryan, Tohid Siddiqui, Stanislava Popova, Mehmet İlyas Coşacak, Prabesh Bhattarai, Kerstin Brandt, Nambirajan Govindarajan, A. Petzold, Susanne Reinhardt, Andreas Dahl, Roger Lefort, Çağhan Kızıl
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.696875

A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum
Cited by: 5
Author(s): Noriyuki Satoh, Hitoshi Tominaga, Masato Kiyomoto, Kanako Hisata, Jun Inoue, Koki Nishitsuji
Software Mentions: 1
Published: over 3 years ago

10.1128/JVI.01295-20

Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus
Cited by: 15
Author(s): Amber R. Syage, H. Atakan Ekiz, Dominic D Skinner, Colleen Stone, Ryan M. O’Connell, Thomas E. Lane
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.43271

Macrophages restrict the nephrogenic field and promote endothelial connections during kidney development
Cited by: 39
Author(s): David A. D. Munro, Yishay Wineberg, Julia Tarnick, Chris S. Vink, Zhuan Li, Clare Pridans, Elaine Dzierzak, Tomer Kalisky, Peter Hohenstein, Jamie A. Davies
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13578-021-00549-w

Single‐cell transcriptomic landscape reveals the differences in cell differentiation and immune microenvironment of papillary thyroid carcinoma between genders
Cited by: 17
Author(s): Miaoguan Peng, Guohong Wei, Yunjian Zhang, Hai Li, Yingrong Lai, Yan Guo, Yuxin Chen, Liehua Liu, Hang Xiao, Hongyu Guan, Yanbing Li
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2020.00384

Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood
Cited by: 18
Author(s): Li Zhou, Indra Adrianto, Jie Wang, Xiaojun Wu, Indrani Datta, Qing‐Sheng Mi
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.662704

TBX20 Contributes to Balancing the Differentiation of Perivascular Adipose-Derived Stem Cells to Vascular Lineages and Neointimal Hyperplasia
Cited by: 2
Author(s): Yongli Ji, Yuankun Ma, Jian Shen, Hui Ni, YiQing Lü, Yuhao Zhang, Hong Ma, Chang Liu, Yiming Zhao, Siyin Ding, Meixiang Xiang, Yao Xie
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.64951

Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering
Cited by: 5
Author(s): Maria Abou Chakra, Ruth Isserlin, Tony Tran, Gary D. Bader
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-021-02381-x

Inhibition of lung tumorigenesis by a small molecule CA170 targeting the immune checkpoint protein VISTA
Cited by: 10
Author(s): Jing Pan, Yao Chen, Qi Zhang, Achia Khatun, Katie Palen, Gang Xu, Li Wang, Chuanjia Yang, Bryon D. Johnson, Charles R. Myers, Shizuko Sei, Robert H. Shoemaker, Ronald A. Lubet, Yian Wang, Weiguo Cui, Ming You
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.69438

Glycolytic preconditioning in astrocytes mitigates trauma-induced neurodegeneration
Cited by: 13
Author(s): Rene Solano Fonseca, Patrick Metang, Nathan Egge, Yingjian Liu, Kielen R Zuurbier, Karthigayini Sivaprakasam, Shawn Shirazi, Ashleigh Chuah, Sonja L. B. Arneaud, Genevieve Konopka, Dong Qian, Peter M. Douglas
Software Mentions: 1
Published: about 3 years ago

10.3389/fcell.2020.595593

Expression Patterns of Claudin Family Members During Tooth Development and the Role of Claudin-10 (Cldn10) in Cytodifferentiation of Stratum Intermedium
Cited by: 11
Author(s): Xin Wang, Yuta Chiba, Lingling Jia, Keigo Yoshizaki, Kan Saito, Aya Yamada, Man Qin, Satoshi Fukumoto
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-0922-4

Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming
Cited by: 212
Author(s): Llorenç Solé-Boldo, Günter Raddatz, Sabrina Schütz, Jan‐Philipp Mallm, Karsten Rippe, Anke S. Lonsdorf, Manuel Rodríguez-Paredes, Frank Lyko
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.715093

HiPS-Endothelial Cells Acquire Cardiac Endothelial Phenotype in Co-culture With hiPS-Cardiomyocytes
Cited by: 12
Author(s): Emmi Helle, Minna Ampuja, Alexandra Dainis, Laura Antola, Elina Temmes, Erik Tolvanen, Eero Mervaala, Riikka Kivelä
Software Mentions: 1
Published: over 3 years ago

10.1038/s41420-021-00403-5

Single-cell analysis reveals the intra-tumor heterogeneity and identifies MLXIPL as a biomarker in the cellular trajectory of hepatocellular carcinoma
Cited by: 19
Author(s): Xiao Dong, Fan Wang, Chuan Liu, Ling Jing, Xiaohong Jia, Feifei Shen, Ning Yang, Sibo Zhu, Lin Zhong, Qi Li
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.47110

A chemical probe of CARM1 alters epigenetic plasticity against breast cancer cell invasion
Cited by: 29
Author(s): Xiao-Chuan Cai, Tuo Zhang, Eui-Jun Kim, Ming Jiang, Ke Wang, Junyi Wang, Shi Chen, Nawei Zhang, Hong Wu, Fengling Li, Carlo C. dela Seña, Hong Zeng, Victor Vivcharuk, Xiang Niu, Weihong Zheng, Jonghan P Lee, Yuling Chen, Dalia Barsyte, Magda Szewczyk, Taraneh Hajian, Glorymar Ibáñez, Aiping Dong, L. Dombrovski, Zhenyu Zhang, Haiteng Deng, Jinrong Min, C.H. Arrowsmith, Linas Mažutis, Lei Shi, Masoud Vedadi, Peter J. Brown, Jenny Xiang, Li‐Xuan Qin, Wei Xu, Minkui Luo
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.716730

Ribosome Proteins Represented by RPL27A Mark the Development and Metastasis of Triple-Negative Breast Cancer in Mouse and Human
Cited by: 11
Author(s): Weipeng Zhao, Xichuan Li, Weiqi Nian, Jun Wang, Xiaorui Wang, Linlin Sun, Ye Zhu, Zhongsheng Tong
Software Mentions: 1
Published: about 3 years ago

10.1038/s41419-019-1647-5

Dissecting cell diversity and connectivity in skeletal muscle for myogenesis
Cited by: 9
Author(s): Y. Liu, Bowen Wu, Lin Gong, An Chen, Junxin Lin, Qikai Li, Deming Jiang, Kaixiu Jin, Asma Mechakra, Varitsara Bunpetch, Li Yu, Yiwei Zou, Hongwei Ouyang, Xiaohui Zou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41422-020-00460-y

AXL is a candidate receptor for SARS-CoV-2 that promotes infection of pulmonary and bronchial epithelial cells
Cited by: 320
Author(s): Shuai Wang, Zongyang Qiu, Yingnan Hou, Xiya Deng, Wei Xu, Tianhang Zheng, Peihan Wu, Shaofang Xie, Weixiang Bian, Chong Zhang, Zewei Sun, Kunpeng Liu, Chao Shan, Aifu Lin, Shibo Jiang, Youhua Xie, Qiang Zhou, Lu Lu, Jing Huang, Xu Li
Software Mentions: 1
Published: almost 4 years ago

10.1002/cti2.1308

No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
Cited by: 5
Author(s): José Alquicira-Hernández, Joseph E. Powell, Tri Giang Phan
Software Mentions: 1
Published: almost 4 years ago

10.3390/cells9010014

Single-Cell Expression Variability Implies Cell Function
Cited by: 25
Author(s): Daniel Osorio, Xue Yu, Yan Zhong, Guanxun Li, Peng Yu, Erchin Serpedin, Jianhua Z. Huang, James J. Cai
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.41156

Nephron progenitor commitment is a stochastic process influenced by cell migration
Cited by: 42
Author(s): Kynan T. Lawlor, Luke Zappia, James G. Lefevre, Joo-Seop Park, Nicholas A. Hamilton, Alicia Oshlack, Melissa H. Little, Alexander N. Combes
Software Mentions: 1
Published: almost 6 years ago

10.14336/AD.2021.0429

Cellular Tropism of SARS-CoV-2 across Human Tissues and Age-related Expression of ACE2 and TMPRSS2 in Immune-inflammatory Stromal Cells
Cited by: 6
Author(s): Ming Zheng
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.671081

Capillarized Liver Sinusoidal Endothelial Cells Undergo Partial Endothelial-Mesenchymal Transition to Actively Deposit Sinusoidal ECM in Liver Fibrosis
Cited by: 13
Author(s): Bai Ruan, Jialin Duan, Hao Xu, Kaishan Tao, Hua Han, Guo‐Rui Dou, Lin Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.704853

Interleukin 32 Promotes Foxp3+ Treg Cell Development and CD8+ T Cell Function in Human Esophageal Squamous Cell Carcinoma Microenvironment
Cited by: 14
Author(s): Han Liang, Shiyu Chen, Zheyi Chen, Bingqian Zhou, Yingxia Zheng, Lisong Shen
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.62810

Defining human mesenchymal and epithelial heterogeneity in response to oral inflammatory disease
Cited by: 45
Author(s): Ana J Caetano, Val Yianni, Ana Angelova Volponi, Veronica Booth, Eleanor M D'Agostino, Paul T. Sharpe
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.695248

Single Nucleus RNA Sequence (snRNAseq) Analysis of the Spectrum of Trophoblast Lineages Generated From Human Pluripotent Stem Cells in vitro
Cited by: 10
Author(s): Teka Khan, Arun S. Seetharam, Jie Zhou, Nathan J. Bivens, Danny J. Schust, Toshihiko Ezashi, Geetu Tuteja, R. Michael Roberts
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-020-02871-6

XJB-5-131 inhibited ferroptosis in tubular epithelial cells after ischemia−reperfusion injury
Cited by: 103
Author(s): Zhi Zhao, Jianzhong Wu, Huzi Xu, Cheng Zhou, Bicui Han, Han Zhu, Zhizhi Hu, Zhimei Ma, Zhang-Yin Ming, Ying Yao, Rui Zeng, Gang Xu
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2020.589717

Analyses of Avascular Mutants Reveal Unique Transcriptomic Signature of Non-conventional Endothelial Cells
Cited by: 6
Author(s): Boryeong Pak, Christopher E. Schmitt, Wonjun Choi, Jun Dae Kim, Orjin Han, Jessica Alsiö, Da Woon Jung, Darren R. Williams, Wouter Coppieters, Didier Y.R. Stainier, Suk Won Jin
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2020.00841

Single-Cell RNA-Sequencing From Mouse Incisor Reveals Dental Epithelial Cell-Type Specific Genes
Cited by: 33
Author(s): Yuta Chiba, Kan Saito, Daniel Martin, Erich T. Boger, Craig Rhodes, Keigo Yoshizaki, Takashi Nakamura, Aya Yamada, Robert J. Morell, Yoshihiko Yamada, Satoshi Fukumoto
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.59323

Comparison of induced neurons reveals slower structural and functional maturation in humans than in apes
Cited by: 30
Author(s): Maria Schörnig, Xiang-Chun Ju, Luise Fast, Sebastian Ebert, Anne Weigert, Sabina Kanton, Theresa Schaffer, Nael Nadif Kasri, Barbara Treutlein, Benjamin M. Peter, Wulf Hevers, Elena Taverna
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.719491

Single-Cell RNA Sequencing Analysis Reveals Greater Epithelial Ridge Cells Degeneration During Postnatal Development of Cochlea in Rats
Cited by: 3
Author(s): Jianyong Chen, Dedong Gao, Junmin Chen, Shule Hou, Baihui He, Yue Li, Shuna Li, Fan Zhang, Xiayu Sun, Fabio Mammano, Liang Sun, Jun Yang, Guiliang Zheng
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.54279

OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification
Cited by: 30
Author(s): Miruna Georgiana Ghinia Tegla, Diego F. Buenaventura, Diana Y Kim, Cassandra Thakurdin, Kevin Gonzalez, Mark M. Emerson
Software Mentions: 1
Published: over 4 years ago

10.1111/acel.13448

Disrupted macrophage metabolic reprogramming in aged soleus muscle during early recovery following disuse atrophy
Cited by: 11
Author(s): Dennis K. Fix, H. Atakan Ekiz, Jonathan J Petrocelli, Alec M. Mckenzie, Ziad Mahmassani, Ryan M. O’Connell, Micah J. Drummond
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm8101726

Phenotypic Switching of Naïve T Cells to Immune-Suppressive Treg-Like Cells by Mutant KRAS
Cited by: 26
Author(s): Arjun Kalvala, Pierre Wallet, Lu Yang, Chongkai Wang, Haiqing Li, Arin Nam, Anusha Nathan, Isa Mambetsariev, Valeriy Poroyko, Han-lin Gao, Peiguo Chu, Martin Sattler, Andrea Bild, Edwin R. Manuel, Peter P. Lee, Mohit Kumar Jolly, Prakash Kulkarni, Ravi Salgia
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0189887

Identification of metastasis driver genes by massive parallel sequencing of successive steps of breast cancer progression
Cited by: 24
Author(s): Anne Bruun Krøigård, Martin Jakob Larsen, Anne‐Vibeke Lænkholm, Ann Knoop, Jeanette Dupont Jensen, Martin Bak, Jan Mollenhauer, Mads Thomassen, Torben A. Kruse
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12974-019-1614-1

Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of human neurons
Cited by: 20
Author(s): Clayton W. Winkler, Tyson A. Woods, Bradley R. Groveman, Aaron B. Carmody, Emily Speranza, Craig Martens, Sonja M. Best, Cathryn L. Haigh, Karin E. Peterson
Software Mentions: 1
Published: about 5 years ago

10.1007/s00395-021-00882-8

Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants
Cited by: 29
Author(s): Jasmin Wagner, Denisa Bojkova, Mariana Shumliakivska, Guillermo Luxán, Luka Nicin, Galip Servet Aslan, Hendrik Milting, Joshua D. Kandler, Andreas Dendorfer, Andreas W. Heumueller, Ingrid Fleming, Sofia-Iris Bibli, Tobias Jakobi, Christoph Dieterich, Andreas M. Zeiher, Sandra Ciesek, Jindrich Cinatl, Stefanie Dimmeler
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1008579

Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell
Cited by: 14
Author(s): Juan M. Inclan-Rico, Christina M. Hernandez, Everett Henry, Hannah Federman, Chandler B. Sy, John J. Ponessa, Alexander Lemenze, Nathanael Joseph, Patricia Soteropoulos, Aimee M. Beaulieu, George Yap, Mark C. Siracusa
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.16407

A single‐cell survey of the human glomerulonephritis
Cited by: 22
Author(s): Zhejun Chen, Ting Zhang, Kaiqiong Mao, Xinghua Shao, Yao Xu, Minyan Zhu, Hang Zhou, Qin Wang, Zhenyuan Li, Yuanyuan Xie, Xiaodong Yuan, Ying Li, Ming Zhang, Jiajia Hu, Shan Mou
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1008906

Reactivating latent HIV with PKC agonists induces resistance to apoptosis and is associated with phosphorylation and activation of BCL2
Cited by: 20
Author(s): Andrea J French, Sekar Natesampillai, Ashton Krogman, Cristina Correia, Kevin Peterson, Alecia Alto, Aswath P. Chandrasekar, Anisha Misra, Ying Liu, Scott H. Kaufmann, Andrew D. Badley, Nathan W. Cummins
Software Mentions: 1
Published: about 4 years ago

10.1038/s41419-021-03724-6

Single cell transcriptional zonation of human psoriasis skin identifies an alternative immunoregulatory axis conducted by skin resident cells
Cited by: 33
Author(s): Yuge Gao, Xinyu Yao, Yumeng Zhai, Li Li, Huini Li, Xianqi Sun, Yu Pei, Tiankuo Xue, Yuzhen Li, Yizhou Hu
Software Mentions: 1
Published: over 3 years ago

10.1080/19336934.2021.1978776

A robust method to isolate Drosophila fat body nuclei for transcriptomic analysis
Cited by: 5
Author(s): Vanika Gupta, Brian P. Lazzaro
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.ppat.1009292

Single cell resolution of SARS-CoV-2 tropism, antiviral responses, and susceptibility to therapies in primary human airway epithelium
Cited by: 65
Author(s): Jessica K. Fiege, Joshua M. Thiede, Hezkiel Nanda, William E. Matchett, Patrick J. Moore, Noe Rico Montanari, Beth K Thielen, Jerry Daniel, Emma Stanley, Ryan C. Hunter, Vineet D. Menachery, Steven S. Shen, Tyler D. Bold, Ryan A. Langlois
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0243959

Female reproductive tract has low concentration of SARS-CoV2 receptors
Cited by: 30
Author(s): Jyoti Goad, Joshua Rudolph, Aleksandar Rajkovic
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.1009260

Maternal schistosomiasis impairs offspring Interleukin-4 production and B cell expansion
Cited by: 6
Author(s): Diana Cortes‐Selva, Lisa Gibbs, Andrew Ready, H. Atakan Ekiz, Ryan M. O’Connell, Bartek Rajwa, Keke C. Fairfax
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13578-021-00562-z

Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis
Cited by: 23
Author(s): Yong Li, Zhonghua Sun, Hongyun Liu, Weipin Niu, Xin Wang, Na Liang, Yanfei Wang, Yaxin Shi, Li Xu, Shi We
Software Mentions: 1
Published: over 3 years ago

10.1186/s12974-020-02010-0

Ocular macrophage origin and heterogeneity during steady state and experimental choroidal neovascularization
Cited by: 15
Author(s): Steven Droho, Benjamin R. Thomson, Hadijat M. Makinde, Carla M. Cuda, Harris Perlman, Jeremy A. Lavine
Software Mentions: 1
Published: about 4 years ago

10.1186/s12974-021-02193-0

Smek1 deficiency exacerbates experimental autoimmune encephalomyelitis by activating proinflammatory microglia and suppressing the IDO1-AhR pathway
Cited by: 6
Author(s): Ruonan Duan, Chunlin Yang, Tong Du, Liu Ai, An-Ran Wang, Wenjie Sun, Xi Li, Jiang-Xia Li, Chuanzhu Yan, Qiji Liu
Software Mentions: 1
Published: over 3 years ago

10.1002/jcsm.12596

Single‐cell deconstruction of post‐sepsis skeletal muscle and adipose tissue microenvironments
Cited by: 20
Author(s): Dong Seong Cho, Rebecca Schmitt, Aneesha Dasgupta, Alexandra M. Ducharme, Jason D. Doles
Software Mentions: 1
Published: over 4 years ago

10.1172/jci.insight.149950

Distinct populations of antigen specific tissue resident CD8 T cells in human cervix mucosa
Cited by: 13
Author(s): Tao Peng, Khamsone Phasouk, Emily L. Bossard, Alexis Klock, Lei Jin, Kerry J. Laing, Christine Johnston, Noel A Williams, Julie Czartoski, Dana Varon, Annalyssa N Long, Jason H. Bielas, Thomas M. Snyder, Harlan Robins, David M. Koelle, M. Juliana McElrath, Anna Wald, Lawrence Corey, Jia Zhu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1009799

Single-cell transcriptomic analyses of T cells in chronic HCV-infected patients dominated by DAA-induced interferon signaling changes
Cited by: 6
Author(s): Matthew A. Burchill, Matthew P. Salomon, Lucy Golden-Mason, Amanda Wieland, Ana C. Maretti-Mira, Michael Gale, Hugo R. Rosen
Software Mentions: 1
Published: over 3 years ago

10.1093/bioinformatics/btaa755

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data
Cited by: 23
Author(s): Massimo Andreatta, Santiago J. Carmona
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.52694

Opioids depress breathing through two small brainstem sites
Cited by: 72
Author(s): Iris Bachmutsky, Xin Wei, Eszter Kish, Kevin Yackle
Software Mentions: 1
Published: almost 5 years ago

10.1073/pnas.1902840116

Low ambient humidity impairs barrier function and innate resistance against influenza infection
Cited by: 220
Author(s): Eriko Kudo, Eric Song, Laura J. Yockey, Tasfia Rakib, Patrick Wong, Robert J. Homer, Akiko Iwasaki
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-019-0720-3

High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting
Cited by: 29
Author(s): Sandra Laurentino, Laura Heckmann, Sara Di Persio, Xin Li, Gerd Meyer zu Hörste, Joachim Wistuba, Jann‐Frederik Cremers, Jörg Gromoll, Sabine Kliesch, Stefan Schlatt, Nina Neuhaus
Software Mentions: 1
Published: about 5 years ago

10.1073/pnas.2005570117

Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary
Cited by: 121
Author(s): Wanbao Niu, Allan C. Spradling
Software Mentions: 1
Published: over 4 years ago

Projects: cran: Seurat

Papers Mentioning Seurat 1,512