Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Seurat

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Seurat

Tools for Single Cell Genomics
36 versions
Latest release: 8 months ago
56 dependent packages
47,302 downloads last month

Papers Mentioning Seurat 1,512

Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing
Cited by: 123
Author(s): Yang Zeng, Jian He, Zhijie Bai, Zongcheng Li, Yandong Gong, Chen Liu, Yanli Ni, Junjie Du, Chunyu Ma, Lihong Bian, Yu Lan, Bing Liu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-79385-w

Potentiality of multiple modalities for single-cell analyses to evaluate the tumor microenvironment in clinical specimens
Cited by: 16
Author(s): Yukie Kashima, Yosuke Togashi, Shota Fukuoka, Tetsuo Kamada, Takuma Irie, Ayako Suzuki, Yoshiaki Nakamura, Kohei Shitara, Tatsunori Minamide, Taku Yoshida, Naofumi Taoka, Tatsuya Kawase, Teiji Wada, Koichiro Inaki, Masataka Chihara, Yukihiko Ebisuno, Sakiyo Tsukamoto, Ryo Fujii, Akihiro Ohashi, Yutaka Suzuki, Katsuya Tsuchihara, Hiroyoshi Nishikawa, Toshihiko Doi
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers13174255

Tumor-Associated Microglia and Macrophages in the Glioblastoma Microenvironment and Their Implications for Therapy
Cited by: 42
Author(s): Rikke Andersen, Atul Anand, Dylan Scott Lykke Harwood, Bjarne Winther Kristensen
Software Mentions: 1
Published: over 2 years ago

10.3389/fpsyt.2021.699033

Developmental Alcohol Exposure in Drosophila: Effects on Adult Phenotypes and Gene Expression in the Brain
Cited by: 8
Author(s): Sneha S Mokashi, Vijay Shankar, Rebecca A. MacPherson, Rachel C. Hannah, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 1
Published: almost 3 years ago

10.15252/msb.202010105

Modeling glioblastoma heterogeneity as a dynamic network of cell states
Cited by: 11
Author(s): Ida Larsson, Erika Dalmo, Ramy Elgendy, Mia Niklasson, Milena Doroszko, Anna Segerman, Rebecka Jörnsten, Bengt Westermark, Sven Nelander
Software Mentions: 1
Published: over 2 years ago

10.1002/advs.201901785

Chemical Cocktail Induces Hematopoietic Reprogramming and Expands Hematopoietic Stem/Progenitor Cells
Cited by: 10
Author(s): Yi Zhou, Xiaogang Zhu, Yuting Dai, Shangwu Xiong, Chuijin Wei, Pei Yu, Yuewen Tang, Liang Wu, Jianfeng Li, Dan Liu, Yanlin Wang, Chen Zhu, Sai‐Juan Chen, Jinyan Huang, Lin Cheng
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-14-302

Identification of somatic mutations in cancer through Bayesian-based analysis of sequenced genome pairs
Cited by: 70
Author(s): Alexis Christoforides, John D. Carpten, Glen J. Weiss, Michael J. Demeure, Daniel D. Von Hoff, David W. Craig
Software Mentions: 1
Published: about 11 years ago

10.3389/fpls.2021.689545

Potential Networks of Nitrogen-Phosphorus-Potassium Channels and Transporters in Arabidopsis Roots at a Single Cell Resolution
Cited by: 6
Author(s): Dhondup Lhamo, Sheng Luan
Software Mentions: 1
Published: almost 3 years ago

10.3389/fphys.2019.01216

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration
Cited by: 8
Author(s): Alessandro Palma, Andrea Cerquone Perpetuini, Federica Ferrentino, Claudia Fuoco, Cesare Gargioli, Giulio Giuliani, Marta Iannuccelli, Luana Licata, Elisa Micarelli, Serena Paoluzi, Livia Perfetto, Lucia Lisa Petrilli, Alessio Reggio, Marco Rosina, Francesca Sacco, Simone Vumbaca, Alessandro Zuccotti, Luisa Castagnoli
Software Mentions: 1
Published: over 4 years ago

10.3389/fphys.2021.664222

XIAP Knockdown in Alcohol-Associated Liver Disease Models Exhibits Divergent in vitro and in vivo Phenotypes Owing to a Potential Zonal Inhibitory Role of SMAC
Cited by: 6
Author(s): Li He, Tejasav S. Sehrawat, Vikas Verma, Amaia Navarro‐Corcuera, Guneet Sidhu, Amy S. Mauer, Xin Luo, Tomohiro Katsumi, Jingbiao Chen, Soni Shah, Juan Pablo Arab, Sheng Cao, Hamid Kashkar, Gregory J. Gores, Harmeet Malhi, Vijay H. Shah
Software Mentions: 1
Published: about 3 years ago

10.1186/s12864-020-6706-x

Modern human changes in regulatory regions implicated in cortical development
Cited by: 16
Author(s): Juan Moriano, Cédric Boeckx
Software Mentions: 1
Published: about 4 years ago