cran: Seurat | Projects | Ecosyste.ms: Papers

10.1038/s41421-020-00219-0

Single-cell RNA sequencing reveals regulation of fetal ovary development in the monkey (Macaca fascicularis)
Cited by: 15
Author(s): Zengli Zhao, Chunyang Li, Tie‐Gang Meng, Yan Wang, Wenbo Liu, Ang Li, Yijun Cai, Yi Hou, Heide Schatten, Zhenbo Wang, Qing‐Yuan Sun, Qiang Sun
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.685577

The Clinical Significance of Mesenteric Lymphocytes in Human Colorectal Cancer
Cited by: 2
Author(s): Zixin Wu, Fei Wang, Liang Li, Yuan Yao, Jie Long, Qingqing Luo, Zhibin Zhao, Wanglin Li, Jie Cao, Zhe–Xiong Lian
Software Mentions: 1
Published: about 3 years ago

10.1186/s12969-020-00444-7

Proceedings from the 2nd Next Gen Therapies for Systemic Juvenile Idiopathic Arthritis and Macrophage Activation Syndrome symposium held on October 3-4, 2019
Cited by: 9
Author(s): Scott Canna, Grant S. Schulert, Adriana de Jesus, Alex Pickering, Hermine I. Brunner, Massimo Gadina, Stewart J. Levine, Raphaela Goldbach‐Mansky, Jonathan Boutelle, Rashmi Sinha, Fabrizio Benedetti, Alexei A. Grom, Beth S. Gottlieb, Rae S. M. Yeung, Mona Riskalla, Sampath Prahalad, Sara Alehashemi, Shan Chandrakasan, Bas Vastert, Yuki Kimura, Anna R. Carlson, Emily Schumacher, Regina Minerva, Jonathan D. Pierce, Kate Pierce, Zulayka Martinez, Kari Cupp, Leah Bush, Wendy Costello, Vincent Delgaizo
Software Mentions: 1
Published: over 4 years ago

10.1242/dmm.047035

Cells expressing PAX8 are the main source of homeostatic regeneration of adult endometrial epithelium and give rise to serous endometrial carcinoma
Cited by: 20
Author(s): Daolin Fu, Andrea De Micheli, Mallikarjun Bidarimath, Lora H. Ellenson, Benjamin D. Cosgrove, Andrea Flesken‐Nikitin, Alexander Yu. Nikitin
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00281-020-00822-z

The contribution of thymic tolerance to central nervous system autoimmunity
Cited by: 9
Author(s): Piero Alberti, Adam E. Handel
Software Mentions: 1
Published: about 4 years ago

10.1186/s12915-018-0527-2

Harnessing single-cell genomics to improve the physiological fidelity of organoid-derived cell types
Cited by: 34
Author(s): Benjamin E. Mead, José Ordovás-Montañés, Alexandra Provost Braun, Lauren Levy, Prerna Bhargava, Matthew J. Szucs, Dustin A. Ammendolia, Melanie A. MacMullan, Xiaolei Yin, Travis Hughes, Marc H. Wadsworth, Rushdy Ahmad, Seth Rakoff-Nahoum, Steven A. Carr, Robert Langer, James J. Collins, Alex K. Shalek, Jeffrey M. Karp
Software Mentions: 1
Published: over 6 years ago

10.1038/s41392-020-00328-y

Kindlin-2 regulates skeletal homeostasis by modulating PTH1R in mice
Cited by: 31
Author(s): Xuekun Fu, Bo Zhou, Qinnan Yan, Chu Tao, Lei Qin, Xiaohao Wu, Sixiong Lin, Sheng Chen, Yisheng Lai, Xuenong Zou, Zengwu Shao, Meiqing Wang, Di Chen, Wenfei Jin, You‐Qiang Song, Huiling Cao, Ge Zhang, Guozhi Xiao
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12915-021-01005-4

Author Correction to: Single-cell RNA-seq reveals a concomitant delay in differentiation and cell cycle of aged hematopoietic stem cells
Cited by: 1
Author(s): Léonard Hérault, Mathilde Poplineau, Adrien Mazuel, Nadine Platet, Élisabeth Rémy, Estelle Duprez
Software Mentions: 1
Published: over 3 years ago

10.1242/dev.186296

A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila
Cited by: 14
Author(s): Nikolai Hörmann, Tabea Schilling, Aicha Haji Ali, Étienne Serbe, Christian Mayer, Alexander Borst, Jesús Pujol-Martí
Software Mentions: 1
Published: almost 5 years ago

10.1161/CIRCULATIONAHA.120.044581

Cross-Priming Dendritic Cells Exacerbate Immunopathology After Ischemic Tissue Damage in the Heart
Cited by: 40
Author(s): Elvira Forte, Bryant Perkins, Amalia Sintou, Harkaran Kalkat, Angelos Papanikolaou, C.N.J. Jenkins, Mashael Alsubaie, Rasheda A. Chowdhury, Theodore M. Duffy, Daniel A. Skelly, Jane Branca, Mohamed Bellahcene, Michael Schneider, Siân E. Harding, Milena B. Furtado, Fu Siong Ng, Muneer G. Hasham, Nadia Rosenthal, Susanne Sattler
Software Mentions: 1
Published: over 3 years ago

10.1242/dev.164038

Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney
Cited by: 122
Author(s): Rajasree Menon, Edgar A. Otto, Austin Kokoruda, Jian Zhou, Zidong Zhang, Euisik Yoon, Yu‐Chih Chen, Olga G. Troyanskaya, Jason R. Spence, Matthias Kretzler, Cristina Cebrián
Software Mentions: 1
Published: over 6 years ago

10.1002/advs.202003516

Asymmetric Cell Division of Fibroblasts is An Early Deterministic Step to Generate Elite Cells during Cell Reprogramming
Cited by: 7
Author(s): Yang Song, Jennifer Soto, Pingping Wang, Qin An, Xuexiang Zhang, SoonGweon Hong, Luke P. Lee, Guoping Fan, Li Yang, Song Li
Software Mentions: 1
Published: over 3 years ago

10.1242/dev.194563

Tissue-resident macrophages regulate lymphatic vessel growth and patterning in the developing heart
Cited by: 44
Author(s): Thomas J. Cahill, Xin Sun, Christophe Ravaud, Cristina Villa del Campo, Konstantinos Klaourakis, Irina-Elena Lupu, Allegra M. Lord, Cathy Browne, Sten Eirik W. Jacobsen, David R. Greaves, David G. Jackson, Sally A. Cowley, William James, Robin P. Choudhury, Joaquim Miguel Vieira, Paul R. Riley
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41423-020-00615-2

A novel CD4+ CTL subtype characterized by chemotaxis and inflammation is involved in the pathogenesis of Graves’ orbitopathy
Cited by: 27
Author(s): Yue Wang, Ziyi Chen, Ting-Jie Wang, Hui Guo, Yufeng Liu, Ningxin Dang, Shiqian Hu, Liping Wu, Chengsheng Zhang, Kai Ye, Bingyin Shi
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.8607

SCelVis: exploratory single cell data analysis on the desktop and in the cloud
Cited by: 8
Author(s): Benedikt Obermayer, Manuel Holtgrewe, Mikko Nieminen, Clemens Messerschmidt, Dieter Beule
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2021.650963

AXL Overexpression in Tumor-Derived Endothelial Cells Promotes Vessel Metastasis in Patients With Hepatocellular Carcinoma
Cited by: 13
Author(s): Zong‐Tao Chai, Xiuping Zhang, Jian‐Yang Ao, Xiao‐Dong Zhu, Mengchao Wu, Wan Yee Lau, Hui‐Chuan Sun, Shuqun Cheng
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.622430

Novel Molecular Hallmarks of Group 3 Medulloblastoma by Single-Cell Transcriptomics
Cited by: 4
Author(s): Chaoying Qin, Yimin Pan, Yuzhe Li, Yue Li, Wenyong Long, Qing Liu
Software Mentions: 1
Published: over 3 years ago

10.1016/j.stemcr.2018.11.020

Method to Synchronize Cell Cycle of Human Pluripotent Stem Cells without Affecting Their Fundamental Characteristics
Cited by: 28
Author(s): Loukia Yiangou, Rodrigo A. Grandy, Carola M. Morell, Rute Tomaz, Anna Osnato, Juned Kadiwala, Daniele Muraro, José Garcia‐Bernardo, Shota Nakanoh, William G. Bernard, Daniel Ortmann, Davis J. McCarthy, Ingrid Simonic, Sanjay Sinha, Ludovic Vallier
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.stemcr.2020.04.002

Spatiotemporal Analysis Reveals Overlap of Key Proepicardial Markers in the Developing Murine Heart
Cited by: 43
Author(s): Irina-Elena Lupu, Andia N. Redpath, Nicola Smart
Software Mentions: 1
Published: over 4 years ago

10.1016/j.stemcr.2020.12.018

Gene Therapy of Dominant CRX-Leber Congenital Amaurosis using Patient Stem Cell-Derived Retinal Organoids
Cited by: 42
Author(s): Kamil Kruczek, Zepeng Qu, James Gentry, Benjamin R Fadl, Linn Gieser, Suja Hiriyanna, Zachary Batz, Mugdha D. Samant, Ash Samanta, Colin J Chu, Laura Campello, Brian P. Brooks, Zhijian Wu, Anand Swaroop
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13578-021-00613-5

Cell subtypes and immune dysfunction in peritoneal fluid of endometriosis revealed by single-cell RNA-sequencing
Cited by: 25
Author(s): Gen Zou, Jianzhang Wang, Xinxin Xu, Ping Xu, Libo Zhu, Qin Yu, Yangying Peng, Xinyue Guo, Tiantian Li, Xinmei Zhang
Software Mentions: 1
Published: over 3 years ago

10.1242/dev.199711

Single-cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human-specific features
Cited by: 52
Author(s): Teresa Rayón, Rory J Maizels, Christopher Barrington, James Briscoe
Software Mentions: 1
Published: over 3 years ago

10.3389/fnins.2021.665762

QPLOT Neurons—Converging on a Thermoregulatory Preoptic Neuronal Population
Cited by: 8
Author(s): Brian A. Upton, Shane P D'Souza, Richard A. Lang
Software Mentions: 1
Published: over 3 years ago

10.1186/s13287-020-01939-6

Generation of cortical neurons through large-scale expanding neuroepithelial stem cell from human pluripotent stem cells
Cited by: 4
Author(s): Shumei Zhao, Kui Duan, Zongyong Ai, Ben Niu, Yanying Chen, Ruize Kong, Tianqing Li
Software Mentions: 1
Published: about 4 years ago

10.1242/dev.172361

Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells
Cited by: 87
Author(s): Sanjeev Kumar, Pei X. Er, Kynan T. Lawlor, Ali Motazedian, Michelle Scurr, Irène M. Ghobrial, Alexander N. Combes, Luke Zappia, Alicia Oshlack, Edouard G. Stanley, Melissa H. Little
Software Mentions: 1
Published: over 5 years ago

10.1111/cpr.13046

Intrapulmonary distal airway stem cell transplantation repairs lung injury in chronic obstructive pulmonary disease
Cited by: 6
Author(s): Xiaofan Wang, Yu Zhao, Dandan Li, Yun Feng, Yusang Xie, Yueqing Zhou, Min Zhou, Yujia Wang, Qu Jian, Wei Zuo
Software Mentions: 1
Published: over 3 years ago

10.1186/s13287-021-02185-0

Single-cell transcriptomic profiling and characterization of endothelial progenitor cells: new approach for finding novel markers
Cited by: 17
Author(s): Mohamed Essameldin Abdelgawad, Christophe Desterke, Georges Uzan, Sina Naserian
Software Mentions: 1
Published: over 3 years ago

10.3389/fnins.2020.614680

Novel Targets of SARS-CoV-2 Spike Protein in Human Fetal Brain Development Suggest Early Pregnancy Vulnerability
Cited by: 15
Author(s): Parul Varma, Zane R. Lybrand, Mariah C. Antopia, Jenny Hsieh
Software Mentions: 1
Published: almost 4 years ago

10.3389/fnmol.2020.00013

Characterizing Adult Cochlear Supporting Cell Transcriptional Diversity Using Single-Cell RNA-Seq: Validation in the Adult Mouse and Translational Implications for the Adult Human Cochlea
Cited by: 38
Author(s): Michael Hoa, Rafal T. Olszewski, Xiaohua Li, Ian Taukulis, Shoujun Gu, Alvin DeTorres, Iván López, Fred H. Linthicum, Akira Ishiyama, Daniel Martin, Robert J. Morell, Matthew W. Kelley
Software Mentions: 1
Published: almost 5 years ago

10.1002/stem.2963

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina
Cited by: 87
Author(s): Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/5595172

Single-Cell Transcriptome Analysis of Human Adipose-Derived Stromal Cells Identifies a Contractile Cell Subpopulation
Cited by: 2
Author(s): Elize Wolmarans, Juanita Mellet, Chrisna Durandt, Fourie Joubert, Michael Sean Pepper
Software Mentions: 1
Published: over 3 years ago

10.3389/fmolb.2020.00054

Toward Modeling Context-Specific EMT Regulatory Networks Using Temporal Single Cell RNA-Seq Data
Cited by: 23
Author(s): Daniel C. Ramirez, Vivek Kohar, Mingyang Lu
Software Mentions: 1
Published: over 4 years ago

10.1002/sctm.20-0378

A replicating stem-like cell that contributes to bone morphogenetic protein 2-induced heterotopic bone formation
Cited by: 6
Author(s): Julio Mejia, Elizabeth Salisbury, Corinne Sonnet, Zbigniew Gugala, Elizabeth A. Olmsted-Davis, Alan R. Davis
Software Mentions: 1
Published: almost 4 years ago

10.7150/thno.43189

Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis
Cited by: 62
Author(s): Yong Zhao, Pengfei Zhang, Wei Ge, Yanni Feng, Lan Li, Zhongyi Sun, Hongfu Zhang, Wei Shen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmolb.2021.673042

Fluorescent Multiplex Immunohistochemistry Coupled With Other State-Of-The-Art Techniques to Systematically Characterize the Tumor Immune Microenvironment
Cited by: 15
Author(s): Anaïs Boisson, G. R. Noel, Manuel Saiselet, Joël Rodrigues-Vitória, Noémie Thomas, Mireille Langouo Fontsa, Doïna Sofronii, Céline Naveaux, Hugues Duvillier, Ligia Craciun, Denis Larsimont, Ahmad Awada, Vincent Detours, Karen Willard-Gallo, Soizic Garaud
Software Mentions: 1
Published: about 3 years ago

10.7150/thno.48954

Reciprocal change in Glucose metabolism of Cancer and Immune Cells mediated by different Glucose Transporters predicts Immunotherapy response
Cited by: 21
Author(s): Kwon Joong Na, Hongyoon Choi, Ho Rim Oh, Yoon Ho Kim, Sae Bom Lee, Yoo Jin Jung, Jaemoon Koh, Samina Park, Hyun Joo Lee, Yoon Kyung Jeon, Doo Hyun Chung, Jin Chul Paeng, In Kyu Park, Chang Hyun Kang, Gi Jeong Cheon, Keon Wook Kang, Dong Hoon Lee, Young Tae Kim
Software Mentions: 1
Published: almost 5 years ago

10.1111/cpr.12933

FGF9 promotes mouse spermatogonial stem cell proliferation mediated by p38 MAPK signalling
Cited by: 28
Author(s): Fan Yang, Eoin C. Whelan, Xuebing Guan, Bingquan Deng, Shu Wang, Jiachen Sun, Mary R. Avarbock, Xin Wu, Ralph L. Brinster
Software Mentions: 1
Published: about 4 years ago

10.7150/thno.55006

Single-cell transcriptome dissection of the toxic impact of Di (2-ethylhexyl) phthalate on primordial follicle assembly
Cited by: 29
Author(s): Jun-Jie Wang, Yu Tian, Minghao Li, Yanqin Feng, Li Kong, Fa‐Li Zhang, Wei Shen
Software Mentions: 1
Published: almost 4 years ago

10.3390/cells10082033

Improving In Vitro Culture of Human Male Fetal Germ Cells
Cited by: 5
Author(s): Myriam Martin-Inaraja, Mónica Ferreira, Jasin Taelman, Cristina Eguizábal, Susana M. Chuva de Sousa Lopes
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers13051049

Clinical Significance of PDCD4 in Melanoma by Subcellular Expression and in Tumor-Associated Immune Cells
Cited by: 10
Author(s): Thuy Tran, Chetan K. Rane, Christopher R. Zito, Sarah A. Weiss, Shlomit Jessel, Liliana E. Lucca, Benjamin Y. Lu, Victor Oginga Oria, Adebowale Adeniran, Veronica Chiang, Sacit Bulent Omay, David A. Hafler, Harriet M. Kluger, Lucia B. Jilaveanu
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.636250

Signatures of B Cell Receptor Repertoire Following Pneumocystis Infection
Cited by: 3
Author(s): Han Sun, Huqin Yang, Kan Zhai, Zhaohui Tong
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.00577

Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells Infected With Human Cytomegalovirus
Cited by: 12
Author(s): Melissa Galinato, Kristen Shimoda, Alexis Aguiar, Fiona Hennig, Dario Boffelli, Michael A. McVoy, Laura Hertel
Software Mentions: 1
Published: over 5 years ago

10.3389/fmed.2020.597967

Susceptibility Factors of Stomach for SARS-CoV-2 and Treatment Implication of Mucosal Protective Agent in COVID-19
Cited by: 10
Author(s): Min Zhang, Chao Feng, Xingchen Zhang, Shuofeng Hu, Yuan Zhang, Min Min, Bing Liu, Xiaomin Ying, Yan Liu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21207491

Emerging Roles of Single-Cell Multi-Omics in Studying Developmental Temporal Patterning
Cited by: 8
Author(s): Andrea Lopes, Elia Magrinelli, Ludovic Telley
Software Mentions: 1
Published: about 4 years ago

10.1101/2021.02.05.429982

Furin cleavage of the SARS-CoV-2 spike is modulated by O-glycosylation
Cited by: 12
Author(s): Liping Zhang, Matthew Mann, Zulfeqhar A. Syed, Hayley M Reynolds, E Tian, N.L. Samara, Darryl C. Zeldin, Lawrence A. Tabak, Karl S. Hagen
Software Mentions: 1
Published: almost 4 years ago

10.3390/cancers12071722

Human Plasma-Derived 3D Cultures Model Breast Cancer Treatment Responses and Predict Clinically Effective Drug Treatment Concentrations
Cited by: 10
Author(s): Kristin Calar, Simona Plesselova, Somshuvra Bhattacharya, Megan Jorgensen, Pilar de la Puente
Software Mentions: 1
Published: over 4 years ago

10.1002/cti2.1191

Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy
Cited by: 31
Author(s): Lisa M. Ebert, Wenbo Yu, Tessa Gargett, John Toubia, Paris M Kollis, Melinda N Tea, Brenton Ebert, Cédric Bardy, Mark van den Hurk, Claudine S. Bonder, Jim Manavis, Kathleen S. Ensbey, Mariana Oksdath Mansilla, Kaitlin G. Scheer, Sally L. Perrin, Rebecca J. Ormsby, Santosh Poonnoose, Barbara Koszyca, Stuart M. Pitson, Bryan W. Day, Guillermo A. Gómez, Michael P. Brown
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmed.2020.563893

ACE2 Expression in Kidney and Testis May Cause Kidney and Testis Infection in COVID-19 Patients
Cited by: 152
Author(s): Caibin Fan, Wei Lu, Kai Li, Yanhong Ding, Jianqing Wang
Software Mentions: 1
Published: almost 4 years ago

10.1128/mBio.01037-20

Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipeline: Pathways to Reservoirs and HIV-Associated Comorbidities
Cited by: 14
Author(s): Rosiris León-Rivera, Brenda Morsey, Meng Niu, Howard S. Fox, Joan W. Berman
Software Mentions: 1
Published: about 4 years ago

10.1016/j.dib.2020.106657

Single cell RNA-sequencing data generated from human pluripotent stem cell-derived lens epithelial cells
Cited by: 2
Author(s): Rachel A Shparberg, Chitra Umala Dewi, Vikkitharan Gnanasambandapillai, Liwan Liyanage, Michael D. O’Connor
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmed.2021.665873

Single-Cell RNA Sequencing Reveals Cellular and Transcriptional Changes Associated With M1 Macrophage Polarization in Hidradenitis Suppurativa
Cited by: 14
Author(s): P. Rosa Coutinho Goulart Mariottoni, Simon W. Jiang, Courtney Ann Prestwood, Vaibhav Jain, Jutamas Suwanpradid, Melodi Javid Whitley, Margaret Coates, David Alan Brown, Detlev Erdmann, David L. Corcoran, Simon Gregory, Tarannum Jaleel, Jennifer Zhang, Tamia Harris-Tryon, Amanda S. MacLeod
Software Mentions: 1
Published: about 3 years ago

10.1186/s13054-021-03555-z

Implications of cardiac markers in risk-stratification and management for COVID-19 patients
Cited by: 16
Author(s): Pengping Li, Wei Wu, Tingting Zhang, Ziyu Wang, Jie Li, Mengyan Zhu, Yuan Liang, Wenhua You, Kening Li, Rong Ding, Bin Huang, Lingxiang Wu, Weiwei Duan, Yi Han, Xuesong Li, Xin Tang, Xin Wang, Han Shen, Qianghu Wang, Hong Yan, Xinyi Xia, Yong Ji, Hongshan Chen
Software Mentions: 1
Published: over 3 years ago

10.1101/2020.07.09.20149849

Severe SAR-CoV-2 infection in humans is defined by a shift in the serum lipidome resulting in dysregulation of eicosanoid immune mediators
Cited by: 10
Author(s): Benjamin Schwarz, Lokesh Sharma, Lydia M. Roberts, Xiaohua Peng, Santos Bermejo, Ian Leighton, Arnau Casanovas Massana, Shelli Farhadian, Albert Icksang Ko, Yale Impact Team, Charles S. Dela Cruz, Catharine M. Bosio
Software Mentions: 1
Published: over 4 years ago

10.3389/fmed.2021.655639

Glomerular Endothelial Cells Are the Coordinator in the Development of Diabetic Nephropathy
Cited by: 8
Author(s): Tingting Li, Kaiyuan Shen, Jiawei Li, Susan W.S. Leung, Tongyu Zhu, Yi Shi
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21207776

Molecular Analysis of Fetal and Adult Primary Human Liver Sinusoidal Endothelial Cells: A Comparison to Other Endothelial Cells
Cited by: 8
Author(s): Muhammad Ahmer Jamil, Heike Singer, Rawya Al-Rifai, Nicole Nüsgen, Melanie Rath, Sascha Strauß, Ioanna Andreou, Johannes Oldenburg, Osman El‐Maarri
Software Mentions: 1
Published: about 4 years ago

10.1002/advs.202004320

Colorectal Cancer Stem Cell States Uncovered by Simultaneous Single‐Cell Analysis of Transcriptome and Telomeres
Cited by: 28
Author(s): Hua Wang, Peng Gong, Tong Chen, Shan Gao, Zhenfeng Wu, Xiaodong Wang, Jie Li, Sadie L. Marjani, José Costa, Sherman M. Weissman, Feng Qi, Xinghua Pan, Lin Liu
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.3001059

The BMP signaling gradient is interpreted through concentration thresholds in dorsal–ventral axial patterning
Cited by: 24
Author(s): Hannah Greenfeld, Jerome Lin, Mary C. Mullins
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2021.679055

An Integrated View on Neuronal Subsets in the Peripheral Nervous System and Their Role in Immunoregulation
Cited by: 9
Author(s): Manuel O. Jakob, Michael Kofoed-Branzk, Divija Deshpande, Shaira Murugan, Christoph S. N. Klose
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2020.108615

Familial Alzheimer’s Disease Mutations in PSEN1 Lead to Premature Human Stem Cell Neurogenesis
Cited by: 43
Author(s): Charles Arber, Christopher Lovejoy, Lachlan Harris, Nanet Willumsen, Argyro Alatza, Jackie M. Casey, Georgie Lines, Caoimhe Kerins, Anika K. Mueller, Henrik Zetterberg, John Hardy, Natalie S. Ryan, Nick C. Fox, Tammaryn Lashley, Selina Wray
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2021.633534

Case Report: Transformation From Cold to Hot Tumor in a Case of NSCLC Neoadjuvant Immunochemotherapy Pseudoprogression
Cited by: 6
Author(s): Wang Jia, Hui Zhu, Qianqian Gao, Jian Sun, Fujian Tan, Qun Li, Hongbo Guo, Jinming Yu
Software Mentions: 1
Published: almost 4 years ago

10.1002/cti2.1221

ISG15 protects human Tregs from interferon alpha‐induced contraction in a cell‐intrinsic fashion
Cited by: 6
Author(s): Ilenia Pacella, Francesca Romana Spinelli, Martina Severa, Eleonora Timperi, Gloria Tucci, Marta Zagaglioni, Fulvia Ceccarelli, Fabiana Rizzo, Eliana M. Coccia, Roosheel Patel, Marta Martín-Fernández, Fabrizio Conti, Vincenzo Barnaba, Silvia Piconese
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.640595

Mesenchymal Stromal Cell-Derived Extracellular Vesicles Restore Thymic Architecture and T Cell Function Disrupted by Neonatal Hyperoxia
Cited by: 16
Author(s): Monica Reis, Gareth R. Willis, Angeles Fernandez-Gonzalez, Vincent Yeung, Elizabeth Taglauer, Margaret E. Magaletta, Teagan J. Parsons, Alan Derr, Xianlan Liu, René Maehr, Stella Kourembanas, S. Alex Mitsialis
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2020.108566

Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing
Cited by: 61
Author(s): Carman Man-Chung Li, Hana Kobayashi Shapiro, Christina Tsiobikas, Laura M. Selfors, Huidong Chen, Jennifer M. Rosenbluth, Kaitlin Moore, K. Gupta, G. Kenneth Gray, Yaara Oren, Michael J. Steinbaugh, Jennifer L. Guerriero, Luca Pinello, Aviv Regev, Joan S. Brugge
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.37701

The subiculum is a patchwork of discrete subregions
Cited by: 62
Author(s): Mark S. Cembrowski, Lihua Wang, Andrew Lemire, Monique Copeland, Salvatore F. DiLisio, Jody Clements, Nelson Spruston
Software Mentions: 1
Published: about 6 years ago

10.1084/jem.20190344

Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses
Cited by: 136
Author(s): Sarah Spencer, Sevgi Köstel Bal, William Egner, Hana Lango Allen, Syed M. Raza, Aiping Chi, Meltem Ö. Gürel, Yuan Zhang, Guangping Sun, R.A. Sabroe, Daniel Greene, William Rae, Tala Shahin, Katarzyna Kania, Rico Chandra Ardy, Marini Thian, Emily Staples, Annika Pecchia-Bekkum, William P.M. Worrall, Jonathan Stephens, Matthew Brown, Salih Tuna, Melanie York, Fiona Shackley, Diarmuid Kerrin, Ravishankar Sargur, Alison M. Condliffe, Hamid Nawaz Tipu, Hye Sun Kuehn, Sergio D. Rosenzweig, Ernest Turro, Simon Tavaré, Adrian J. Thrasher, Duncan I. Jodrell, Kenneth G. C. Smith, Kaan Boztuğ, Joshua D. Milner, James Thaventhiran
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13133152

A Systems Approach to Brain Tumor Treatment
Cited by: 20
Author(s): James H. Park, Adrián López García de Lomana, Diego M. Marzese, Tiffany Juarez, Abdullah H. Feroze, Parvinder Hothi, Charles S. Cobbs, Anoop P. Patel, Santosh Kesari, Sui Huang, Nitin S. Baliga
Software Mentions: 1
Published: over 3 years ago

10.1084/jem.20200891

Phenotypic and functional characterization of first-trimester human placental macrophages, Hofbauer cells
Cited by: 79
Author(s): Jake Thomas, Anna Appios, Xiaohui Zhao, Roksana Dutkiewicz, Maria J. Donde, Colin Y C Lee, Praveena Naidu, Christopher Lee, Joana Cerveira, Bing Liu, Florent Ginhoux, Graham J. Burton, Russell S. Hamilton, Ashley Moffett, Andrew Sharkey, Naomi McGovern
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers13112763

HGF/c-Met Inhibition as Adjuvant Therapy Improves Outcomes in an Orthotopic Mouse Model of Pancreatic Cancer
Cited by: 5
Author(s): Tony Pang, Zhijian Xu, Alpha Raj Mekapogu, Srinivasa Pothula, Therese M. Becker, Susan M. Corley, Marc R. Wilkins, David Goldstein, Romano C. Pirola, Jeremy S. Wilson
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21207534

MiR-302 Regulates Glycolysis to Control Cell-Cycle during Neural Tube Closure
Cited by: 13
Author(s): Rachel A. Keuls, Karin Kojima, Brittney Lozzi, John W. Steele, Justin Chen, Steven S. Gross, Richard H. Finnell, Ronald J. Parchem
Software Mentions: 1
Published: about 4 years ago

10.1093/cercor/bhab067

Expression of Genes in the 16p11.2 Locus during Development of the Human Fetal Cerebral Cortex
Cited by: 9
Author(s): Sarah Morson, Yifei Yang, David J. Price, Thomas C. Pratt
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.597651

Lymphoma Heterogeneity Unraveled by Single-Cell Transcriptomics
Cited by: 7
Author(s): Loïc Ysebaert, Anne Quillet‐Mary, Marie Tosolini, Frédéric Pont, Camille Laurent, Jean‐Jacques Fournié
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.710750

Reduced CCR6+IL-17A+Treg Cells in Blood and CCR6-Dependent Accumulation of IL-17A+Treg Cells in Lungs of Patients With Allergic Asthma
Cited by: 8
Author(s): Xiaokun Shen, Huiyun Zhang, Hua Xie, Liping Chen, Shinan Li, Jian Zheng, Ruonan Chai, Zhao Wang, Yanyan Zang, Shaoheng He
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pbio.3001200

Ventricular, atrial, and outflow tract heart progenitors arise from spatially and molecularly distinct regions of the primitive streak
Cited by: 36
Author(s): Kenzo Ivanovitch, Pablo Soro-Barrio, Probir Chakravarty, Rebecca A. Jones, Donald M. Bell, S. Neda Mousavy Gharavy, Despina Stamataki, Julien Delile, James C. Smith, James Briscoe
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.645359

Identification of Silkworm Hemocyte Subsets and Analysis of Their Response to Baculovirus Infection Based on Single-Cell RNA Sequencing
Cited by: 20
Author(s): Mei Feng, Junming Xia, Shigang Fei, Ruoxuan Peng, Xiong Wang, Yaohong Zhou, Pengwei Wang, Luc Swevers, Jingchen Sun
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.02145

Re-analysis of Single Cell Transcriptome Reveals That the NR3C1-CXCL8-Neutrophil Axis Determines the Severity of COVID-19
Cited by: 79
Author(s): Jang Hyun Park, Kyung-Mi Lee
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2021.696536

A Novel Single Cell RNA-seq Analysis of Non-Myeloid Circulating Cells in Late Sepsis
Cited by: 11
Author(s): Dijoia B Darden, Xiaoru Dong, Todd M. Brusko, Lauren S. Kelly, Brittany Fenner, Jaimar Rincón, Marvin Dirain, Ricardo Ungaro, Dina C. Nacionales, M. M. J. Gauthier, Michael P. Kladde, Todd M. Brusko, Azra Bïhorac, Frederick A. Moore, Tyler J. Loftus, Rhonda Bacher, Lyle L. Moldawer, Alicia M. Mohr, Philip A. Efron
Software Mentions: 1
Published: over 3 years ago

10.1038/s41368-020-0074-x

High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa
Cited by: 1,918
Author(s): Hao Xu, Liang Zhong, Jiaxin Deng, Jiakuan Peng, Hongxia Dan, Xin Zeng, Taiwen Li, Qianming Chen
Software Mentions: 1
Published: over 4 years ago

10.1186/s13045-017-0401-7

Studying hematopoiesis using single-cell technologies
Cited by: 35
Author(s): Fang Ye, Wentao Huang, Guoji Guo
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13045-019-0822-6

Single-cell RNA sequencing reveals compartmental remodeling of tumor-infiltrating immune cells induced by anti-CD47 targeting in pancreatic cancer
Cited by: 82
Author(s): Yu Pan, Fang Lü, Qinglin Fei, Xingxing Yu, Ping Xiong, Xunbin Yu, Yuan Dang, Zelin Hou, Wentao Lin, Xianchao Lin, Zheyang Zhang, Minggui Pan, Heguang Huang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-020-0808-5

Investigating cone photoreceptor development using patient-derived NRL null retinal organoids
Cited by: 58
Author(s): Alyssa Kallman, Elizabeth E. Capowski, Jie Wang, Aniruddha M. Kaushik, Alex D. Jansen, Kimberly L. Edwards, Liben Chen, Cynthia Berlinicke, M. Joseph Phillips, Eric A. Pierce, Jiang Qian, Tza Huei Wang, David M. Gamm, Donald J. Zack
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21176244

Δ9-Tetrahydrocannabinol Prevents Mortality from Acute Respiratory Distress Syndrome through the Induction of Apoptosis in Immune Cells, Leading to Cytokine Storm Suppression
Cited by: 34
Author(s): Amira Mohammed, Hasan Alghetaa, Kathryn Miranda, Kiesha Wilson, Narendra P. Singh, Guoshuai Cai, Nagireddy Putluri, Prakash Nagarkatti
Software Mentions: 1
Published: about 4 years ago

10.1016/j.ijpara.2020.09.004

Schistosoma mansoni venom allergen-like protein 6 (SmVAL6) maintains tegumental barrier function
Cited by: 4
Author(s): Samïrah Perally, Kathrin K. Geyer, Priscila Silva Grijó Farani, Iain W. Chalmers, Narcís Fernández-Fuentes, Daniel R. Maskell, Benjamin J. Hulme, Josephine Forde-Thomas, Dylan Phillips, Leonardo P. Farias, James J. Collins, Karl F. Hoffmann
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.578848

Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature
Cited by: 11
Author(s): Tiina Kelkka, Paula Savola, Dipabarna Bhattacharya, Jani Huuhtanen, Tapio Lönnberg, Matti Kankainen, Kirsi Paalanen, Mikko Tyster, Maija Lepistö, Pekka Ellonen, Johannes Smolander, Samuli Eldfors, Bhagwan Yadav, Sofia Khan, Riitta Koivuniemi, Christopher Sjöwall, Laura L. Elo, Harri Lähdesmäki, Yuka Maeda, Hiroyoshi Nishikawa, Marjatta Leirisalo‐Repo, Tuulikki Sokka‐Isler, Satu Mustjoki
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2018.01612

Inflammasome Priming Mediated via Toll-Like Receptors 2 and 4, Induces Th1-Like Regulatory T Cells in De Novo Autoimmune Hepatitis
Cited by: 13
Author(s): Adam S. Arterbery, Jie Yao, Andrew Ling, Yaron Avitzur, Mercedes Martínez, Steven Lobritto, Yanhong Deng, Gan Geliang, Sameet Mehta, Guilin Wang, James Knight, Udeme D. Ekong
Software Mentions: 1
Published: over 6 years ago

10.1038/s41421-019-0137-3

More than one antibody of individual B cells revealed by single-cell immune profiling
Cited by: 35
Author(s): Zhan Shi, Qingyang Zhang, Huige Yan, Ying Yang, Pingzhang Wang, Yixiao Zhang, Zhenling Deng, Meng Yu, Wenjing Zhou, Qianqian Wang, Xi Yang, Xiaoning Mo, Chi Zhang, Jing Huang, Hui Dai, Bao‐Fa Sun, Yongliang Zhao, Liang Zhang, Ying Yang, Xiaoyan Qiu
Software Mentions: 1
Published: almost 5 years ago

10.1167/iovs.19-26951

Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors
Cited by: 22
Author(s): Diego F. Buenaventura, Adrianne Corseri, Mark M. Emerson
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph18010284

The scRNA-seq Expression Profiling of the Receptor ACE2 and the Cellular Protease TMPRSS2 Reveals Human Organs Susceptible to SARS-CoV-2 Infection
Cited by: 73
Author(s): Jing Qi, Yang Zhou, Jing Hua, Liying Zhang, Jialin Bian, Beibei Liu, Zhao Zhang, Shuilin Jin
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2021.697840

CD169 Defines Activated CD14+ Monocytes With Enhanced CD8+ T Cell Activation Capacity
Cited by: 25
Author(s): Alsya J. Affandi, Katarzyna Olesek, Joanna Grabowska, Maarten K. Nijen Twilhaar, Elizabeth Rodríguez, Anno Saris, E. Zwart, Esther J. Nossent, Hakan Kalay, Michael de Kok, Geert Kazemier, Johannes Stöckl, Alfons J.M. van den Eertwegh, Tanja D. de Gruijl, Juan J. García-Vallejo, Gert Storm, Yvette van Kooyk, Joke M. M. den Haan
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.3000585

Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer’s model of adult zebrafish brain
Cited by: 63
Author(s): Prabesh Bhattarai, Mehmet İlyas Coşacak, Violeta Mashkaryan, Sevgican Demir, Stanislava Popova, Nambirajan Govindarajan, Kerstin Brandt, Yixin Zhang, Wei‐Kuo Chang, Konstantinos Ampatzis, Çağhan Kızıl
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2019.02148

Disruption of Neutrophil Extracellular Traps (NETs) Links Mechanical Strain to Post-traumatic Inflammation
Cited by: 20
Author(s): Shailesh Agarwal, Shawn Loder, David Cholok, John Li, Guowu Bian, Srilakshmi Yalavarthi, Shuli Li, William F. Carson, Charles Hwang, Simone Marini, Chase A. Pagani, Nicole Edwards, Matthew J. Delano, Theodore J. Standiford, Jason S. Knight, Steven L. Kunkel, Yuji Mishina, Peter A. Ward, Benjamin Lévi
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.642891

Elevated Fibronectin Levels in Profibrotic CD14+ Monocytes and CD14+ Macrophages in Systemic Sclerosis
Cited by: 17
Author(s): Michał Rudnik, Amela Hukara, Ievgeniia Kocherova, Suzana Jordan, Janine Schniering, Vincent Milleret, Martin Ehrbar, Karin Klingel, Carol Feghali‐Bostwick, Oliver Distler, Przemysław Błyszczuk, Gabriela Kania
Software Mentions: 1
Published: about 3 years ago

10.1136/jitc-2020-001749

Therapeutic depletion of CCR8+ tumor-infiltrating regulatory T cells elicits antitumor immunity and synergizes with anti-PD-1 therapy
Cited by: 66
Author(s): Helena Van Damme, Bruno Dombrecht, Máté Kiss, Heleen Roose, Elizabeth Allen, Eva Van Overmeire, Daliya Kancheva, Liesbet Martens, Aleksandar Murgaski, Pauline M. R. Bardet, Gillian Blancke, Maude Jans, Evangelia Bolli, Maria Solange Martins, Yvon Elkrim, James Dooley, Louis Boon, Julia Katharina Schwarze, Frank Tacke, Kiavash Movahedi, Niels Vandamme, Bart Neyns, Sebahat Ocak, Isabelle Scheyltjens, Lars Vereecke, Frank Aboubakar Nana, Pascal Merchiers, Damya Laoui, Jo A. Van Ginderachter
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2021.630892

Spontaneously Resolved Atopic Dermatitis Shows Melanocyte and Immune Cell Activation Distinct From Healthy Control Skin
Cited by: 17
Author(s): Katharina Rindler, Thomas Krausgruber, Felix M. Thaler, Natalia Alkon, Christine Bangert, Harald Kurz, Nikolaus Fortelny, Thomas B. Rojahn, Constanze Jonak, Johannes Griss, Christoph Bock, Patrick M. Brunner
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2020.581209

Single-Cell RNA-Sequencing Shift in the Interaction Pattern Between Glioma Stem Cells and Immune Cells During Tumorigenesis
Cited by: 26
Author(s): You Zhai, Guanzhang Li, Renpeng Li, Yuanhao Chang, Yuemei Feng, Di Wang, Fan Wu, Wei Zhang
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-01167-x

Maximizing transcription of nucleic acids with efficient T7 promoters
Cited by: 30
Author(s): Thomas Conrad, Izabela Plumbom, Maria Alcobendas, Ramón Vidal, Sascha Sauer
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2020.01496

IL-34 Actions on FOXP3+ Tregs and CD14+ Monocytes Control Human Graft Rejection
Cited by: 13
Author(s): Séverine Bézie, Antoine Freuchet, Céline Sérazin, Apolline Salama, Nadège Vimond, Ignacio Anegón, Carole Guillonneau
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.25299

The effects of restricted glycolysis on stem-cell like characteristics of breast cancer cells
Cited by: 9
Author(s): Ansuman Banerjee, Pardis Arvinrad, Matthew Darley, Stéphanie A Laversin, Rachel Parker, Matthew Rose-Zerilli, Paul A. Townsend, Ramsey I. Cutress, Stephen A. Beers, Franchesca D. Houghton, Charles N. Birts, Jeremy P. Blaydes
Software Mentions: 1
Published: over 6 years ago

10.1038/s41421-021-00300-2

Integrated single-cell analysis revealed immune dynamics during Ad5-nCoV immunization
Cited by: 18
Author(s): Qiqi Cao, Shipo Wu, Chuan-Le Xiao, Shuzhen Chen, Xiangyang Chi, Xiuliang Cui, Hao Tang, Wenru Su, Jiayong Zhong, Zhaomin Li, Fang Li, Haijia Chen, Lihua Hou, Hongyang Wang, Wen Wen
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/8127281

Single-Cell Transcriptome Analysis Profile of Meniscal Tissue Macrophages in Human Osteoarthritis
Cited by: 6
Author(s): Jingjiao Zhou, Zhihong Zhao, Chen He, Feng Gao, Yu Guo, Feng Qu, Yujie Liu
Software Mentions: 1
Published: over 4 years ago

10.1016/j.celrep.2018.09.006

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution
Cited by: 183
Author(s): Jeffrey B. Cheng, Andrew J. Sedgewick, Alex I Finnegan, Paymann Harirchian, Jerry Lee, Sunjong Kwon, Marlys S. Fassett, Justin Golovato, Matthew A. Gray, Ruby Ghadially, Wilson Liao, Bethany E. Perez White, Theodora M. Mauro, Thaddeus W. Mully, Esther A. Kim, Hani Sbitany, Isaac M. Neuhaus, Roy C. Grekin, Siegrid S. Yu, Joe W. Gray, Elizabeth Purdom, Ralf Paus, Charles J. Vaske, Stephen C. Benz, Jun S. Song, Raymond J. Cho
Software Mentions: 1
Published: about 6 years ago

Projects: cran: Seurat

Papers Mentioning Seurat 1,512