cran: Seurat | Projects | Ecosyste.ms: Papers

10.1186/s13059-021-02433-9

Community-wide hackathons to identify central themes in single-cell multi-omics
Cited by: 6
Author(s): Kim‐Anh Lê Cao, Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb, Atul Deshpande, Yuzhou Feng, P. Jeganathan, Melanie Loth, Chen Meng, Wancen Mu, Véra Pancaldi, Kris Sankaran, Dario Righelli, Amrit Singh, Joshua Sodicoff, Genevieve Stein-O’Brien, Ayshwarya Subramanian, Joshua D. Welch, Yue You, Ricard Argelaguet, Vincent J. Carey, Ruben Dries, Casey S. Greene, Susan Holmes, Michael I. Love, Matthew E. Ritchie, Guo‐Cheng Yuan, Aedín Culhane, Elana J. Fertig
Software Mentions: 2
Published: over 3 years ago

10.1186/s13059-021-02469-x

AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data
Cited by: 23
Author(s): Asa Thibodeau, Alper Eroğlu, Christopher S. McGinnis, Nathan Lawlor, Djamel Nehar-Belaid, Romy Kursawe, Radu Marcheş, Daniel N. Conrad, George A. Kuchel, Zev J. Gartner, Jacques Banchereau, Michael L. Stitzel, A. Ercüment Çiçek, Duygu Ucar
Software Mentions: 2
Published: about 3 years ago

10.20892/j.issn.2095-3941.2021.0158

Hypoxic microenvironment induced spatial transcriptome changes in pancreatic cancer
Cited by: 20
Author(s): Hongxia Sun, Danfang Zhang, Chongbiao Huang, Yuhong Guo, Yupei Zhao, Nan Yao, Xueyi Dong, Run-Fen Cheng, Nan Zhao, Jie Meng, Bei Sun, Jihui Hao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13058-021-01468-x

Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer
Cited by: 9
Author(s): Anastasia A. Ionkina, Gabriela Balderrama-Gutierrez, Krystian J Ibanez, Steve Huy D. Phan, Angelique Cortez, A Mortazavi, Jennifer A. Prescher
Software Mentions: 2
Published: about 3 years ago

10.1038/s41416-021-01394-x

A deep convolutional neural network for segmentation of whole-slide pathology images identifies novel tumour cell-perivascular niche interactions that are associated with poor survival in glioblastoma
Cited by: 16
Author(s): Amin Zadeh Shirazi, Mark D. McDonnell, Eric Fornaciari, Narjes Sadat Bagherian, Kaitlin G. Scheer, Michael S. Samuel, Mahdi Yaghoobi, Rebecca J. Ormsby, Santosh Poonnoose, Damon J. Tumes, Guillermo A. Gómez
Software Mentions: 2
Published: over 3 years ago

10.1186/s13073-020-00776-9

Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions
Cited by: 115
Author(s): Wei Lin, Pawan Noel, Erkut Borazanci, Jeeyun Lee, Albert Amini, In Woong Han, Jin Seok Heo, Gayle Jameson, Cory R. Fraser, Margaux Steinbach, Yanghee Woo, Yuman Fong, Derek Cridebring, Daniel D. Von Hoff, Joon Oh Park, Haiyong Han
Software Mentions: 2
Published: about 4 years ago

10.1186/s13073-021-00842-w

CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells
Cited by: 2
Author(s): Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, Roberta Menafra, Susan L. Kloet, Hendrik Veelken, Cornelis A.M. van Bergen, Ewa Szczurek
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22168943

ExpressHeart: Web Portal to Visualize Transcriptome Profiles of Non-Cardiomyocyte Cells
Cited by: 3
Author(s): Gang Li, Changfei Luan, Yanhan Dong, Yifang Xie, Scott C Zentz, Rob Zelt, Jeff Roach, Jiandong Liu, Qian Li, Yun Li, Yuchen Yang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41408-019-0221-9

Mutational processes contributing to the development of multiple myeloma
Cited by: 39
Author(s): Phuc H. Hoang, Alex J. Cornish, Sara E. Dobbins, Martin Kaiser, Richard S. Houlston
Software Mentions: 2
Published: over 5 years ago

10.1186/s13073-021-00941-8

Using single-nucleus RNA-sequencing to interrogate transcriptomic profiles of archived human pancreatic islets
Cited by: 14
Author(s): Giorgio Basile, Sevim Kahraman, Ercument Dirice, Pei Hui, Jonathan M. Dreyfuss, Rohit Kulkarni
Software Mentions: 2
Published: over 3 years ago

10.1186/s40364-021-00265-0

Single-cell map of diverse immune phenotypes in the acute myeloid leukemia microenvironment
Cited by: 36
Author(s): Rong Guo, Mengdie Lü, Fujiao Cao, Guanghua Wu, Fengcai Gao, Haili Pang, Yadan Li, Yinyin Zhang, Haizhou Xing, Chaozhao Liang, Tianxin Lyu, Chunyan Du, Yingmei Li, Rong Guo, Xinsheng Xie, Wei Li, Delong Liu, Yongping Song, Zhongxing Jiang
Software Mentions: 2
Published: over 3 years ago

10.1186/s40364-020-00253-w

Longitudinal CITE-Seq profiling of chronic lymphocytic leukemia during ibrutinib treatment: evolution of leukemic and immune cells at relapse
Cited by: 14
Author(s): Sarah Cadot, Carine Valle, Marie Tosolini, Frédéric Pont, Laëtitia Largeaud, Camille Laurent, Jean Jacques Fourniè, Loïc Ysebaert, Anne Quillet‐Mary
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22179111

Sclerostin Depletion Induces Inflammation in the Bone Marrow of Mice
Cited by: 5
Author(s): Cristine Donham, Betsabel Chicana, Alexander G. Robling, Asmaa H. Mohamed, Sonny R. Elizaldi, Michael Chi, Brian M. Freeman, Alberto J. Millan, Deepa K. Murugesh, Nicholas R. Hum, Aimy Sebastian, Gabriela G. Loots, Jennifer O. Manilay
Software Mentions: 2
Published: over 3 years ago

10.3390/biology10060511

Diversity of Rainbow Trout Blood B Cells Revealed by Single Cell RNA Sequencing
Cited by: 15
Author(s): Pedro Perdiguero, Esther Morel, Carolina Tafalla
Software Mentions: 2
Published: over 3 years ago

10.1093/gigascience/giz121

IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis
Cited by: 14
Author(s): Yunching Chen, Abhilash Suresh, Chingiz Underbayev, Clare Sun, Komudi Singh, Fayaz Seifuddin, Adrian Wiestner, Mehdi Pirooznia
Software Mentions: 2
Published: about 5 years ago

10.1002/glia.23844

Microglia influence host defense, disease, and repair following murine coronavirus infection of the central nervous system
Cited by: 35
Author(s): Vrushali Mangale, Amber R. Syage, H. Atakan Ekiz, Dominic D Skinner, Yu-Ting Cheng, Colleen Stone, Randy Brown, Ryan M. O’Connell, Kim N. Green, Thomas E. Lane
Software Mentions: 2
Published: over 4 years ago

10.1016/j.immuni.2018.12.018

The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages
Cited by: 543
Author(s): Julie Schulthess, Sumeet Pandey, Melania Capitani, Kévin Rue-Albrecht, Isabelle C. Arnold, Fanny Franchini, Agnieszka Chomka, Nicholas E. Ilott, Daniel Johnston, Elisabete Pires, James McCullagh, Stephen N. Sansom, Carolina V. Arancibia‐Cárcamo, Holm H. Uhlig, Fiona Powrie
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00251-018-01099-1

The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcγR) in the Göttingen minipig
Cited by: 5
Author(s): Jérôme Egli, Roland Schmucki, Ben Loos, Stephan Reichl, Nils Grabole, Andreas Roller, Martin Ebeling, Alex Odermatt, Antonio Iglesias
Software Mentions: 2
Published: almost 6 years ago

10.20900/immunometab20190008

Single-Cell RNA Sequencing of Visceral Adipose Tissue Leukocytes Reveals that Caloric Restriction Following Obesity Promotes the Accumulation of a Distinct Macrophage Population with Features of Phagocytic Cells
Cited by: 51
Author(s): Ada Weinstock, Emily J. Brown, Michela L. Garabedian, Stephanie Pena, Monika Sharma, Juan J. Lafaille, Kathryn J. Moore, Edward A. Fisher
Software Mentions: 2
Published: over 5 years ago

10.1093/bioinformatics/btab273

scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling
Cited by: 8
Author(s): Dongyuan Song, Kexin Li, Zachary Hemminger, Roy Wollman, Jingyi Jessica Li
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.140179

Risk-associated alterations in marrow T cells in pediatric leukemia
Cited by: 18
Author(s): Jithendra Kini Bailur, Samuel S. McCachren, Katherine E. Pendleton, Juan C. Vasquez, Hong Seo Lim, Alyssa Duffy, Deon B. Doxie, Akhilesh Kaushal, Connor Foster, Deborah DeRyckere, Sharon M. Castellino, Melissa L. Kemp, Peng Qiu, Madhav V. Dhodapkar, Kavita M. Dhodapkar
Software Mentions: 2
Published: over 4 years ago

10.1172/jci.insight.142513

PD-1 blockade restores helper activity of tumor-infiltrating, exhausted PD-1hiCD39+ CD4 T cells
Cited by: 58
Author(s): Camille-Charlotte Balança, Anna Salvioni, Clara-Maria Scarlata, Marie Michelas, Carlos Martínez-Gómez, Carlos Gomez‐Roca, Victor Sarradin, Marie Tosolini, Carine Valle, Frédéric Pont, Gwénaël Ferron, Laurence Gladieff, S. Vergez, Agnès Dupret‐Bories, Eliane Mery-Lamarche, Philippe Rochaix, Jean‐Jacques Fournié, Jean‐Pierre Delord, Christel Devaud, Alejandra Martínez, Maha Ayyoub
Software Mentions: 2
Published: almost 4 years ago

10.1172/jci.insight.145108

A road map from single-cell transcriptome to patient classification for the immune response to trauma
Cited by: 25
Author(s): Tianmeng Chen, Matthew J. Delano, Kong Chen, Jason L. Sperry, Rami A. Namas, Ashley J. Lamparello, Meihong Deng, Julia Conroy, Lyle L. Moldawer, Philip A. Efron, Patricia Loughran, Christopher W. Seymour, Derek C. Angus, Yoram Vodovotz, Wei Chen, Timothy R. Billiar
Software Mentions: 2
Published: almost 4 years ago

10.1172/jci.insight.140669

Tristetraprolin expression by keratinocytes protects against skin carcinogenesis
Cited by: 8
Author(s): Assiya Assabban, Ingrid Dubois-Vedrenne, Laurye Van Maele, Rosalba Salcedo, Brittany L. Snyder, Long Zhou, Abdulkader Azouz, Bérengère de Toeuf, Gaëlle Lapouge, Caroline La, Maxime Melchior, Muriel Nguyen, Séverine Thomas, Shu Fen Wu, Wenqian Hu, Véronique Kruys, Cédric Blanpain, Giorgio Trinchieri, Cyril Gueydan, Perry J. Blackshear, Stanislas Goriely
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.145857

Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu
Cited by: 9
Author(s): Brittany A. Goods, Michael H. Askenase, Erica Markarian, Hannah E. Beatty, Riley S. Drake, Ira Fleming, Jonathan H. DeLong, Naomi H. Philip, Charles Matouk, Issam A. Awad, Mario Zuccarello, Daniel F. Hanley, J. Christopher Love, Alex K. Shalek, Lauren H Sansing
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.146707

Hedgehog-induced PD-L1 on tumor-associated macrophages is critical for suppression of tumor-infiltrating CD8+ T cell function
Cited by: 42
Author(s): Amy J. Petty, Rui Dai, Rosa Lapalombella, Robert A. Baiocchi, Don M. Benson, Zihai Li, Xin Huang, Yiping Yang
Software Mentions: 2
Published: over 3 years ago

10.1093/bioinformatics/btab298

stPlus: a reference-based method for the accurate enhancement of spatial transcriptomics
Cited by: 26
Author(s): Shengquan Chen, Boheng Zhang, Xiaoyang Chen, Xuegong Zhang, Rui Jiang
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.134170

Delta-like 4 is required for pulmonary vascular arborization and alveolarization in the developing lung
Cited by: 5
Author(s): Xia Sheng, Heather Menden, Nick Townley, Sherry M Mabry, Jeff Johnston, Michael F. Nyp, Daniel P. Heruth, Thomas R. Korfhagen, Venkatesh Sampath
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.139793

Obesity results in adipose tissue T cell exhaustion
Cited by: 47
Author(s): Cara E. Porsche, Jennifer B. DelProposto, Lynn M. Geletka, Robert W. O’Rourke, Carey N. Lumeng
Software Mentions: 2
Published: over 3 years ago

10.1186/s12951-021-00923-3

Single-cell RNA sequencing reveals the mechanism of sonodynamic therapy combined with a RAS inhibitor in the setting of hepatocellular carcinoma
Cited by: 15
Author(s): Bolin Wu, Yanchi Yuan, Jiayin Liu, Haitao Shang, Jing Dong, Xitian Liang, Dongxu Wang, Yi-Chi Chen, Chunyue Wang, Yang Zhou, Hui Jing, Wen Cheng
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.149228

Distinctive waves of innate immune response in the retina in experimental autoimmune encephalomyelitis
Cited by: 10
Author(s): Andrés Cruz-Herranz, Frederike Cosima Oertel, Kicheol Kim, Ester Cantó, Garrett Timmons, Jung Hyung Sin, Michael Devereux, Nicholas S. Baker, Brady Michel, Ryan Schubert, Lakshmisahithi Rani, Christian Cordano, Sergio E. Baranzini, Ari J. Green
Software Mentions: 2
Published: over 3 years ago

10.1172/jci.insight.148920

HIV infection drives interferon signaling within intestinal SARS-CoV-2 target cells
Cited by: 6
Author(s): Rabiah Fardoos, Osaretin E. Asowata, Nicholas Herbert, Sarah K. Nyquist, Yenzekile Zungu, Abhijeet Singh, Abigail Ngoepe, Ian Mbano, Ntombifuthi Mthabela, Dirhona Ramjit, Farina Karim, Warren Kuhn, Fusi G. Madela, Vukani T. Manzini, Frank Anderson, Bonnie Berger, Tune H. Pers, Alex K. Shalek, Alasdair Leslie, Henrik N. Kløverpris
Software Mentions: 2
Published: over 3 years ago

10.1186/s12974-021-02244-6

Hippocampal glucose uptake as a surrogate of metabolic change of microglia in Alzheimer’s disease
Cited by: 24
Author(s): Hongyoon Choi, Yoori Choi, Eun Ji Lee, Hyun Kim, Young Sun Lee, Seokjun Kwon, Do Won Hwang, Dong Hoon Lee, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 2
Published: about 3 years ago

10.1172/jci.insight.151981

Autophagy-mitophagy induction attenuates cardiovascular inflammation in a murine model of Kawasaki disease vasculitis
Cited by: 17
Author(s): Stefanie Marek-Iannucci, Asli Beyza Ozdemir, Debbie Moreira, Alejandro Raúl Gratacós Gómez, Malcolm Lane, Rebecca A. Porritt, Youngho Lee, Kenichi Shimada, Masanori Abe, Aleksandr Stotland, David Zemmour, Sarah J. Parker, Elsa Sánchez-López, Jennifer E. Van Eyk, Roberta A. Gottlieb, Michael C. Fishbein, Michael Karin, Timothy R. Crother, Magali Noval Rivas, Moshe Arditi
Software Mentions: 2
Published: about 3 years ago

10.1016/j.jbc.2021.100291

Androglobin gene expression patterns and FOXJ1-dependent regulation indicate its functional association with ciliogenesis
Cited by: 19
Author(s): Teng Wei Koay, Carina Osterhof, Ilaria M.C. Orlando, Anna Keppner, Daniel Andre, Schayan Yousefian, María Suárez Alonso, Miguel Correia, Robert Markworth, Johannes Schödel, Thomas Hankeln, David Hoogewijs
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12974-021-02242-8

Interleukin-6 actions in the hypothalamus protects against obesity and is involved in the regulation of neurogenesis
Cited by: 18
Author(s): Vanessa Cristina Dias Bóbbo, Daiane F. Engel, Carlos Poblete Jara, Nelson F. Mendes, Roberta Haddad-Tóvolli, Thaís Paulino do Prado, Davi Sidarta-Oliveira, Joseane Morari, Lı́cio A. Velloso, Eliana P. Araújo
Software Mentions: 2
Published: about 3 years ago

10.7150/jca.44034

Improved Prognostic Prediction of Glioblastoma using a PAS Detected from Single-cell RNA-seq
Cited by: 1
Author(s): Hongwei Liu, Qi Yang, Yi Xiong, Zujian Xiong, Xuejun Li
Software Mentions: 2
Published: almost 5 years ago

10.1186/s42234-020-00057-1

The role of nicotinic receptors in SARS-CoV-2 receptor ACE2 expression in intestinal epithelia
Cited by: 5
Author(s): Anne S. ten Hove, David J. Brinkman, Andrew Y. Li Yim, Caroline Verseijden, Theo B.M. Hakvoort, Iris Admiraal, Olaf Welting, Patricia H. P. van Hamersveld, Valérie Sinniger, Bruno Bonaz, Misha D. P. Luyer, Wouter J. de Jonge
Software Mentions: 2
Published: about 4 years ago

10.1007/s00395-019-0765-7

Cell shape determines gene expression: cardiomyocyte morphotypic transcriptomes
Cited by: 11
Author(s): Payam Haftbaradaran Esfahani, Zaher Elbeck, Sven Sagasser, Xidan Li, Mohammad Bakhtiar Hossain, Husain Ahammad Talukdar, Rickard Sandberg, Ralph Knöll
Software Mentions: 2
Published: almost 5 years ago

10.1111/jcmm.15541

The ACE2 expression in Sertoli cells and germ cells may cause male reproductive disorder after SARS‐CoV‐2 infection
Cited by: 137
Author(s): Qiaoyan Shen, Xia Xiao, Aili Aierken, Wei Y, Xiaojie Wu, Mingzhi Liao, Jinlian Hua
Software Mentions: 2
Published: over 4 years ago

10.1111/jcmm.15867

Mutations in the notch signalling pathway are associated with enhanced anti‐tumour immunity in colorectal cancer
Cited by: 14
Author(s): Fei Wang, Jie Long, Liang Li, Zhibin Zhao, Wei Fang, Yuan Yao, Wei Qiu, Zixin Wu, Qingqing Luo, Wei Liu, Yibo Quan, Zhe‐Xiong Lian, Jie Cao
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.16021

Single‐cell multi‐omics analysis presents the landscape of peripheral blood T‐cell subsets in human chronic prostatitis/chronic pelvic pain syndrome
Cited by: 15
Author(s): Meng Zhang, Yi Liu, Junyi Chen, Lei Chen, Jialin Meng, Cheng Yang, Shuiping Yin, Xiansheng Zhang, Li Zhang, Zongyao Hao, Xianguo Chen, Chaozhao Liang
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.16315

Cell‐specific network analysis of human folliculogenesis reveals network rewiring in antral stage oocytes
Cited by: 5
Author(s): Shengran Wang, Yun Gong, Zun Wang, Jonathan Greenbaum, Hong‐Mei Xiao, Hong‐Wen Deng
Software Mentions: 2
Published: almost 4 years ago

10.1172/JCI130308

Angiopoietin-2 blockade ameliorates autoimmune neuroinflammation by inhibiting leukocyte recruitment into the CNS
Cited by: 21
Author(s): Zhilin Li, Emilia A. Korhonen, Arianna Merlini, Johannes Strauß, Eleonoora Wihuri, Harri Nurmi, Salli Antila, Jennifer Paech, Urban Deutsch, Britta Engelhardt, Sudhakar Chintharlapalli, Gou Young Koh, Alexander Flügel, Kari Alitalo
Software Mentions: 2
Published: over 4 years ago

10.3390/jdb8040031

Transcriptional Trajectories in Mouse Limb Buds Reveal the Transition from Anterior-Posterior to Proximal-Distal Patterning at Early Limb Bud Stage
Cited by: 9
Author(s): Inès Desanlis, Rachel Paul, Marie Kmita
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1009025

TLR-9 agonist and CD40-targeting vaccination induces HIV-1 envelope-specific B cells with a diversified immunoglobulin repertoire in humanized mice
Cited by: 18
Author(s): Véronique Godot, Colas Tchérakian, Laurine Gil, Iñaki Cervera-Marzal, Guangming Li, Cheng Liu, Nicolas Ortonne, Jean‐Daniel Lelièvre, Giuseppe Pantaleo, Craig Fenwick, Mireille Centlivre, Hugo Mouquet, Sylvain Cardinaud, Sandra Zurawski, Gérard Zurawski, Pierre Milpied, Lishan Su, Yves Lévy
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1009249

The NF-κB regulator Bcl-3 restricts terminal differentiation and promotes memory cell formation of CD8+ T cells during viral infection
Cited by: 6
Author(s): Hemant Jaiswal, Thomas Ciucci, Hongshan Wang, Wanhu Tang, Estefanı́a Claudio, Philip M. Murphy, Rémy Bosselut, Ulrich Siebenlist
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1009240

Temporally integrated single cell RNA sequencing analysis of PBMC from experimental and natural primary human DENV-1 infections
Cited by: 19
Author(s): Adam T. Waickman, Heather Friberg, Gregory D. Gromowski, Wiriya Rutvisuttinunt, Tao Li, Hayden Siegfried, Kaitlin Victor, Michael K. McCracken, Stefan Fernandez, Anon Srikiatkhachorn, Damon W. Ellison, Richard G. Jarman, Stephen J. Thomas, Alan L. Rothman, Timothy P. Endy, Jeffrey R. Currier
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1009288

Extrafollicular CD4 T cell-derived IL-10 functions rapidly and transiently to support anti-Plasmodium humoral immunity
Cited by: 9
Author(s): Fionna A. Surette, Jenna J. Guthmiller, Lei Li, Alexandria J. Sturtz, Rahul Vijay, Rosemary L. Pope, Brandon L. McClellan, Angela D. Pack, Ryan Zander, Pengfei Shao, Linda Lan, Daniel Fernandez‐Ruiz, William R. Heath, Patrick C. Wilson, Noah S. Butler
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1009581

Biogenesis of P-TEFb in CD4+ T cells to reverse HIV latency is mediated by protein kinase C (PKC)-independent signaling pathways
Cited by: 12
Author(s): Uri Mbonye, Konstantin Leskov, Meenakshi Shukla, Saba Valadkhan, Jonathan Karn
Software Mentions: 2
Published: about 3 years ago

10.1073/pnas.1907883116

Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians
Cited by: 177
Author(s): Kosuke Hashimoto, Tsukasa Kouno, Tomokatsu Ikawa, Norihito Hayatsu, Yurina Miyajima, Haruka Yabukami, Tommy Terooatea, Takashi Sasaki, Tsuyoshi Suzuki, Matthew Valentine, Giovanni Pascarella, Yasushi Okazaki, Harukazu Suzuki, Jay W. Shin, Aki Minoda, Ichiro Taniuchi, Hideyuki Okano, Yasumichi Arai, Nobuyoshi Hirose, Piero Carninci
Software Mentions: 2
Published: about 5 years ago

10.1073/pnas.2008762117

Single-nucleus transcriptome analysis reveals dysregulation of angiogenic endothelial cells and neuroprotective glia in Alzheimer’s disease
Cited by: 200
Author(s): Shun‐Fat Lau, Han Cao, Amy Kit Yu Fu, Nancy Y. Ip
Software Mentions: 2
Published: about 4 years ago

10.1073/pnas.2021450118

Targeting transcriptional regulation of SARS-CoV-2 entry factors ACE2 and TMPRSS2
Cited by: 133
Author(s): Yuanyuan Qiao, Xiaoming Wang, Rahul Mannan, Sethuramasundaram Pitchiaya, Yuping Zhang, Jesse W Wotring, Lanbo Xiao, Dan R. Robinson, Yi-Mi Wu, Jean C. Tien, Xuhong Cao, Stephanie A. Simko, Ingrid J. Apel, Pushpinder Bawa, Steven Kregel, Sathiya Pandi Narayanan, Gregory Raskind, Stephanie J. Ellison, Abhijit Parolia, Sylvia Zelenka-Wang, Lisa McMurry, Fengyun Su, Rui Wang, Yunhui Cheng, Andrew Delekta, Zejie Mei, Carla D. Pretto, Shaomeng Wang, Rohit Mehra, Jonathan Z. Sexton, Arul M. Chinnaiyan
Software Mentions: 2
Published: almost 4 years ago

10.1073/pnas.2018587118

Major alterations in the mononuclear phagocyte landscape associated with COVID-19 severity
Cited by: 97
Author(s): Egle Kvedaraite, Laura Hertwig, Indranil Sinha, Andrea Ponzetta, Ida Hed Myrberg, Magda Lourda, Majda Dzidic, Mira Akber, Jonas Klingström, Elin Folkesson, Jagadeeswara Rao Muvva, Puran Chen, Sara Gredmark‐Russ, Susanna Brighenti, Anna Norrby‐Teglund, Lars Eriksson, Olav Rooyackers, Soo Aleman, Kristoffer Strålin, Hans‐Gustaf Ljunggren, Florent Ginhoux, Niklas K. Björkström, Jan‐Inge Henter, Mattias Svensson, Karolinska Ki
Software Mentions: 2
Published: almost 4 years ago

10.1073/pnas.2111315118

Profound Treg perturbations correlate with COVID-19 severity
Cited by: 92
Author(s): Silvia Galván-Peña, Juliette Léon, Kaitavjeet Chowdhary, Daniel A Michelson, Brinda Vijaykumar, Liang Yang, Angela M. Magnuson, Felicia Chen, Zachary Manickas-Hill, Alicja Piechocka-Trocha, Daniel Worrall, Kathryn Hall, Musie Ghebremichael, Bruce D. Walker, Jonathan Z. Li, Xu G. Yu, Diane Mathis, Christophe Benoist
Software Mentions: 2
Published: about 3 years ago

10.1523/JNEUROSCI.2905-20.2021

Differential Expression Levels of Sox9 in Early Neocortical Radial Glial Cells Regulate the Decision between Stem Cell Maintenance and Differentiation
Cited by: 10
Author(s): Jaime Fabra-Beser, Jéssica Alves Medeiros de Araújo, Diego Marques‐Coelho, Loyal A. Goff, Marcos Romualdo Costa, Ulrich Müller, Cristina Gil-Sanz
Software Mentions: 2
Published: over 3 years ago

10.1530/REP-21-0079

Muscarinic acetylcholine receptor M5 is involved in spermatogenesis through the modification of cell–cell junctions
Cited by: 6
Author(s): Xiao Han, Cong Zhang, Xiangping Ma, Xiaowei Yan, Bohui Xiong, Wei Shen, Shen Yin, Hongfu Zhang, Sun Qingyuan, Yong Zhao
Software Mentions: 2
Published: over 3 years ago

10.21203/rs.3.rs-62758/v1

Modeling COVID-19 with Human Pluripotent Stem Cell-Derived Cells Reveals Synergistic Effects of Anti-inflammatory Macrophages with ACE2 Inhibition Against SARS-CoV-2
Cited by: 18
Author(s): Fuyu Duan, Liyan Guo, Liuliu Yang, Yanxiao Han, Abhimanyu Thakur, Benjamin E. Nilsson-Payant, Pengfei Wang, Zhao Zhang, Chui Yan, Xin Zhou, Teng Han, Tuo Zhang, Xing Wang, Dong Xu, Xiaohua Duan, Jenny Xiang, Hung‐Fat Tse, Can Liao, Weiren Luo, Fang-Ping Huang, Yawen Chen, Todd Evans, Robert E. Schwartz, Benjamin R. tenOever, David D. Ho, Shuibing Chen, Qizhou Lian, Huanhuan Joyce Chen
Software Mentions: 2
Published: over 4 years ago

10.21203/rs.3.rs-311000/v1

Single-cell immunophenotyping of the fetal immune response to maternal SARS-CoV-2 infection in late gestation
Cited by: 4
Author(s): Juan D. Matute, Benjamin Finander, David Pépin, Xinbin Ai, Neal Smith, Jonathan Li, Andrea G. Edlow, Alexandra Chloé Villani, Paul H. Lerou, Brian T. Kalish
Software Mentions: 2
Published: over 3 years ago

10.1186/s12887-021-02754-5

Utilizing single-cell RNA sequencing for analyzing the characteristics of PBMC in patients with Kawasaki disease
Cited by: 10
Author(s): Fei Xue, Yuhan Zhou, Xin Guo, Minhui Xu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12883-021-02407-1

Cell type-specific potential pathogenic genes and functional pathways in Alzheimer’s Disease
Cited by: 15
Author(s): Xiaolan Wang, Lianjian Li
Software Mentions: 2
Published: about 3 years ago

10.21203/rs.3.rs-133494/v1

Type I Interferon Transcriptional Network Regulates Expression of Coinhibitory Receptors in Human T cells
Cited by: 1
Author(s): David A. Hafler, Tomokazu Sumida, Shai Dulberg, J.C. Schupp, Helen Stillwell, Pierre-Paul Axisa, Michela Comi, Matthew R. Lincoln, Avraham Unterman, Naftali Kaminski, Asaf Madi, Vijay K. Kuchroo
Software Mentions: 2
Published: over 3 years ago

10.21203/rs.3.rs-678247/v1

Cross neutralization of emerging SARS-CoV-2 variants of concern by antibodies targeting distinct epitopes on spike
Cited by: 3
Author(s): Patrick C. Wilson, Siriruk Changrob, Yanbin Fu, Jenna J. Guthmiller, Peter Halfmann, Lei Li, Christopher T. Stamper, Haley L. Dugan, Molly A. Accola, William M. Rehrauer, Na Zheng, Min Huang, Jiaolong Wang, Steven A. Erickson, Henry A. Utset, Hortencia M Graves, Fatima Amanat, D. Noah Sather, Florian Krammer, Yoshihiro Kawaoka
Software Mentions: 2
Published: over 3 years ago

10.21203/rs.3.rs-846250/v1

Increased Neutrophil-Subset Associated With Severity/Mortality In ARDS And COVID19-ARDS Expresses The Dual Endothelin-1/VEGFsignal-Peptide Receptor (DEspR): An Actionable Therapeutic Target
Cited by: 0
Author(s): Victoria L. M. Herrera, Allan J. Walkey, Mai Q. Nguyen, Christopher Gromisch, Julie Z. Mosaddhegi, Matthew S. Gromisch, Bakr Jundi, Soeren Lukassen, Saskia Carstensen, Ridiane Denis, Anna C. Belkina, Rebecca M. Baron, Mayra Pinilla-Vera, Meike Müller, W. Taylor Kimberly, Joshua N. Goldstein, Irina Lehmann, Angela R. Shih, Roland Eils, Bruce D. Levy, Nelson Ruiz-Opazo
Software Mentions: 2
Published: about 3 years ago

10.1016/j.xpro.2021.100581

Collection and preprocessing of fine needle aspirate patient samples for single cell profiling and data analysis
Cited by: 1
Author(s): Aizhan Tastanova, Egle Ramelyte, Zsolt Balázs, Ulrike Menzel, Christian Beisel, Michael Krauthammer, Reinhard Dummer, Mitchell P. Levesque
Software Mentions: 2
Published: over 3 years ago

10.1038/s41597-019-0351-8

Single-cell RNA sequencing of human kidney
Cited by: 133
Author(s): Jinling Liao, Zhenyuan Yu, Chen Yang, Mengying Bao, Chunlin Zou, Haiying Zhang, Deyun Liu, Tianyu Li, Qingyun Zhang, Jiaping Li, Jian Cheng, Zengnan Mo
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12920-021-01011-z

A method for cryopreservation and single nucleus RNA-sequencing of normal adult human interventricular septum heart tissue reveals cellular diversity and function
Cited by: 10
Author(s): Amy Larson, Michael T. Chin
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-018-4922-4

Single cell RNA-seq data clustering using TF-IDF based methods
Cited by: 18
Author(s): Marmar Moussa, Ion Măndoiu
Software Mentions: 2
Published: over 6 years ago

10.1002/advs.202003897

Single‐Cell Transcriptome Analysis Uncovers Intratumoral Heterogeneity and Underlying Mechanisms for Drug Resistance in Hepatobiliary Tumor Organoids
Cited by: 29
Author(s): Yan Zhao, Zhixuan Li, Yanjing Zhu, Jing Fu, Xianzhi Zhao, Yani Zhang, Shan Wang, Jianmin Wu, Kaiting Wang, Rui Wu, Chengjun Sui, Siyun Shen, Xuan Wu, Hongyang Wang, Dong Gao, Lei Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-020-07136-2

Identification of diverse cell populations in skeletal muscles and biomarkers for intramuscular fat of chicken by single-cell RNA sequencing
Cited by: 18
Author(s): Jinghui Li, Siyuan Xing, Guiping Zhao, Maiqing Zheng, Xinting Yang, Jiahong Sun, Jie Wen, Ranran Liu
Software Mentions: 2
Published: about 4 years ago

10.1186/s12864-020-07344-w

Correction for both common and rare cell types in blood is important to identify genes that correlate with age
Cited by: 5
Author(s): Damiano Pellegrino-Coppola, Annique Claringbould, Maartje Stutvoet, Dorret I. Boomsma, M. Arfan Ikram, P. Eline Slagboom, Harm-Jan Westra, Lude Franke
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-016-0021-4

Clinical Implementation of Integrated Genomic Profiling in Patients with Advanced Cancers
Cited by: 21
Author(s): Mitesh J. Borad, Jan B. Egan, Rachel Condjella, Winnie S. Liang, Rafaël Fonseca, Nicole R. Ritacca, Ann E. McCullough, Michael T. Barrett, Katherine S. Hunt, Mia D. Champion, Maitray D. Patel, Scott W. Young, Alvin C. Silva, Thai H. Ho, Thorvardur R. Halfdanarson, Robert R. McWilliams, Konstantinos N. Lazaridis, Ramesh K. Ramanathan, Angela Baker, Jessica Aldrich, Ahmet Kurdoglu, Tyler Izatt, Alexis Christoforides, Irene Cherni, Sara Nasser, Rebecca Reiman, Lori Cuyugan, Jacquelyn McDonald, Jonathan Adkins, Stephen D. Mastrian, Riccardo Valdez, Dawn E. Jaroszewski, Daniel D. Von Hoff, David W. Craig, A. Keith Stewart, John D. Carpten, Alan H. Bryce
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-017-16009-w

The role of Cdx2 as a lineage specific transcriptional repressor for pluripotent network during the first developmental cell lineage segregation
Cited by: 51
Author(s): Daosheng Huang, Guoji Guo, Ping Yuan, Amy Ralston, Luwei Sun, Mikael Huss, Tapan Kumar Mistri, Luca Pinello, Huck Hui Ng, Guo‐Cheng Yuan, Junfeng Ji, Janet Rossant, Paul Robson, Xiaoping Han
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-37977-7

Combined quantification of intracellular (phospho-)proteins and transcriptomics from fixed single cells
Cited by: 65
Author(s): Jan P. Gerlach, Jessie A.G.L. van Buggenum, Sabine E.J. Tanis, Mark Hogeweg, Branco M. H. Heuts, Mauro J. Muraro, Lisa Elze, Francesca Rivello, Agata Rakszewska, Alexander van Oudenaarden, Wilhelm T. S. Huck, Hendrik G. Stunnenberg, Klaas W. Mulder
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-40809-x

Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model
Cited by: 23
Author(s): Jiamin Chen, Billy T. Lau, Noemi Andor, Susan M. Grimes, Christine Handy, Christina Wood-Bouwens, Hanlee P. Ji
Software Mentions: 2
Published: over 5 years ago

10.1523/ENEURO.0089-21.2021

Phenotypic Differences between the Alzheimer’s Disease-Related hAPP-J20 Model and HeterozygousZbtb20Knock-Out Mice
Cited by: 7
Author(s): Daniel R. Gulbranson, Kaitlyn Ho, Gui-Qiu Yu, Xinxing Yu, Melanie Das, Eric Shao, Daniel Kim, Weiping J. Zhang, Krishna Choudhary, Reuben Thomas, Lennart Mucke
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-58059-7

Multi-omics characterization of a diet-induced obese model of non-alcoholic steatohepatitis
Cited by: 37
Author(s): Helene M Ægidius, Sanne Skovgård Veidal, Michael Feigh, Philip Hallenborg, Michele Puglia, Tune H. Pers, Niels Vrang, Jacob Jelsing, Birgitte Rahbek Kornum, Blagoy Blagoev, Kristoffer Rigbolt
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-58327-6

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation
Cited by: 71
Author(s): Alan Selewa, Ryan Dohn, Heather Eckart, Stephanie Lozano, Bingqing Xie, Eric Gauchat, Reem Elorbany, Katherine Rhodes, Jonathan E. Burnett, Yoav Gilad, Sebastian Pott, Anindita Basu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-64158-2

Ly6cLo non-classical monocytes promote resolution of rhesus rotavirus-mediated perinatal hepatic inflammation
Cited by: 16
Author(s): Anas Alkhani, Claire S. Levy, Margaret Tsui, Katherine Rosenberg, Katya Polovina, Aras N. Mattis, Matthias Mack, Steven J. Van Dyken, Bruce M. Wang, Jacquelyn J. Maher, Amar Nijagal
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-72261-7

Single-cell RNA-seq identifies unique transcriptional landscapes of human nucleus pulposus and annulus fibrosus cells
Cited by: 34
Author(s): Lorenzo M. Fernandes, Nazir M. Khan, Camila M. Trochez, Meixue Duan, Martha Elena Díaz-Hernández, Steven M. Presciutti, Greg Gibson, Hicham Drissi
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-80334-w

Mitochondrial gene expression in single cells shape pancreatic beta cells' sub-populations and explain variation in insulin pathway
Cited by: 9
Author(s): Hadar Medini, T. Cohen, Dan Mo
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-019-5802-2

A single-cell transcriptomic atlas of the developing chicken limb
Cited by: 34
Author(s): Christian Feregrino, Fabio Sacher, Oren Parnas, Patrick Tschopp
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84514-0

Bayesian network-driven clustering analysis with feature selection for high-dimensional multi-modal molecular data
Cited by: 2
Author(s): Yize Zhao, Changgee Chang, Margaret Hannum, Jasme Lee, Ronglai Shen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-95532-3

Immune cell residency in the nasal mucosa may partially explain respiratory disease severity across the age range
Cited by: 15
Author(s): Konner Winkley, Dithi Banerjee, Todd Bradley, Boryana Koseva, Warren A. Cheung, Rangaraj Selvarangan, Tomi Pastinen, Elin Grundberg
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-97522-x

Macrophage-derived interleukin-6 is necessary and sufficient for choroidal angiogenesis
Cited by: 16
Author(s): Steven Droho, Carla M. Cuda, Harris Perlman, Jeremy A. Lavine
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-97887-z

A combination approach of pseudotime analysis and mathematical modeling for understanding drug-resistant mechanisms
Cited by: 2
Author(s): Shigeyuki Magi, Sewon Ki, Masao Ukai, Elisa Domínguez‐Hüttinger, Atsuhiko T. Naito, Yutaka Suzuki, Mariko Okada
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98560-1

Detailed characterization of the transcriptome of single B cells in mantle cell lymphoma suggesting a potential use for SOX4
Cited by: 3
Author(s): Stinus Hansen, Mette Halskov Hansen, Oriane Cédile, Michael Møller, Jacob Haaber, Niels Abildgaard, Charlotte Guldborg Nyvold
Software Mentions: 2
Published: about 3 years ago

10.1126/scitranslmed.abf7872

SARS-CoV-2 infection of human iPSC–derived cardiac cells reflects cytopathic features in hearts of patients with COVID-19
Cited by: 127
Author(s): Juan A. Pérez-Bermejo, Serah S Kang, Sarah J. Rockwood, Camille R. Simoneau, David A Joy, Ana C. Silva, Gokul N. Ramadoss, Will Flanigan, Parinaz Fozouni, Huihui Li, Peiyi Chen, Ken Nakamura, Jeffrey D. Whitman, P. J. Hanson, Bruce M. McManus, Mélanie Ott, Bruce R. Conklin, Todd C. McDevitt
Software Mentions: 2
Published: over 3 years ago

10.1038/s41392-021-00501-x

Targeting Erbin in B cells for therapy of lung metastasis of colorectal cancer
Cited by: 7
Author(s): Tong Shen, Jinglin Liu, Chuyi Wang, Youlutuziayi Rixiati, Li Shi, Lei Cai, Yuanyuan Zhao, Jianming Li
Software Mentions: 2
Published: over 3 years ago

10.1038/s41392-021-00591-7

The olfactory route is a potential way for SARS-CoV-2 to invade the central nervous system of rhesus monkeys
Cited by: 72
Author(s): Jiao Li, Yun Yang, Yu Wu, Yuan Zhao, Haiting Long, Jian Gao, Kan Ding, Chang–Jin Ma, Jingmei Li, Shuaiyang Zhao, Haixuan Wang, Haiyan Li, Mengli Yang, Jingwen Xu, Junbin Wang, Jing Yang, Dexuan Kuang, Fangyu Luo, Xiangyang Qian, Longjiang Xu, Bin Yin, Wei Liu, Hongqi Liu, Shuaiyao Lu, Xiaozhong Peng
Software Mentions: 2
Published: over 3 years ago

10.1038/s41392-021-00610-7

Rapid isolation and immune profiling of SARS-CoV-2 specific memory B cell in convalescent COVID-19 patients via LIBRA-seq
Cited by: 38
Author(s): Bing He, Shuning Liu, Yuanyuan Wang, Mengxin Xu, Wei Cai, Jia Liu, Wendi Bai, Shupei Ye, Yong Ma, Hengrui Hu, Huicui Meng, Tao Sun, Yanling Li, Huanle Luo, Mǎng Shī, Xiangjun Du, Wenjing Zhao, Shoudeng Chen, Jingyi Yang, Haipeng Zhu, Yusheng Jie, Yuedong Yang, Deyin Guo, Qiao Wang, Yuwen Liu, Huimin Yan, Manli Wang, Yao-Qing Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12915-017-0383-5

Cell fixation and preservation for droplet-based single-cell transcriptomics
Cited by: 176
Author(s): Jonathan Alles, Nikos Karaiskos, Samantha D. Praktiknjo, Stefanie Grosswendt, Philipp Wahle, Pierre-Louis Ruffault, Salah Ayoub, Luisa Schreyer, Anastasiya Boltengagen, Carmen Birchmeier, Robert P. Zinzen, Christine Kocks, Nikolaus Rajewsky
Software Mentions: 2
Published: over 7 years ago

10.1186/s12915-020-00941-x

No detectable alloreactive transcriptional responses under standard sample preparation conditions during donor-multiplexed single-cell RNA sequencing of peripheral blood mononuclear cells
Cited by: 4
Author(s): Christopher S. McGinnis, David Siegel, Guorui Xie, George C. Hartoularos, Mars Stone, Chun Jimmie Ye, Zev J. Gartner, Nadia R. Roan, Sulggi Lee
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41392-021-00730-0

BCL9 regulates CD226 and CD96 checkpoints in CD8+ T cells to improve PD-1 response in cancer
Cited by: 15
Author(s): Mei Feng, Zhongen Wu, Yan Zhou, Wei Zhuang, Enming Tian, Shenglin Mei, Yuanyuan Zhu, Chenglong Liu, Fan He, Huiyu Li, Conghua Xie, Julia Jin, Jianyu Dong, Dehua Yang, Ker Yu, Jun Qian, Diether Lambrechts, Mingwei Wang, Di Zhu
Software Mentions: 2
Published: over 3 years ago

10.1016/j.stemcr.2021.07.007

Troy/Tnfrsf19 marks epidermal cells that govern interfollicular epidermal renewal and cornification
Cited by: 1
Author(s): Kai Kretzschmar, Kim E. Boonekamp, Margit Bleijs, Priyanca Asra, Mandy Koomen, Susana M. Chuva de Sousa Lopes, Barbara Giovannone, Hans Clevers
Software Mentions: 2
Published: about 3 years ago

10.1186/s13287-020-01660-4

Single-cell RNA-seq highlights heterogeneity in human primary Wharton’s jelly mesenchymal stem/stromal cells cultured in vitro
Cited by: 47
Author(s): Chengbo Sun, Lei Wang, Hailun Wang, Tingrun Huang, Wenwen Yao, Jing Li, Xi Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s13287-020-02043-5

Single-cell RNA sequencing of equine mesenchymal stromal cells from primary donor-matched tissue sources reveals functional heterogeneity in immune modulation and cell motility
Cited by: 23
Author(s): Rebecca M. Harman, Roosheel Patel, Jiwei Fan, Jee E. Park, Brad R. Rosenberg, Gerlinde R. Van de Walle
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13287-020-02121-8

Deconstructing transcriptional variations and their effects on immunomodulatory function among human mesenchymal stromal cells
Cited by: 7
Author(s): Chengbo Sun, Kehua Zhang, Jianhui Yue, Meng Shao, Xi Zhang
Software Mentions: 2
Published: almost 4 years ago

10.7150/thno.52514

Mesenchymal stem cell-mediated immunomodulation of recruited mononuclear phagocytes during acute lung injury: a high-dimensional analysis study
Cited by: 14
Author(s): Jingqi Liu, Pan Li, Jiaqi Zhu, Feiyan Lin, Jiarong Zhou, Bing Feng, Xinyu Sheng, Xiaowei Shi, Qiaoling Pan, Jiong Yu, Gao J, Lanjuan Li, Hong Cao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12915-021-00977-7

Chromatin architecture reveals cell type-specific target genes for kidney disease risk variants
Cited by: 10
Author(s): Aiping Duan, Hong Wang, Yan Zhu, Qi Wang, Jing Zhang, Qi Hou, Yufei Xing, Jin‐Song Shi, Jinhua Hou, Zhaohui Qin, Zhaohong Chen, Zhihong Liu, Jingping Yang
Software Mentions: 2
Published: over 3 years ago

Projects: cran: Seurat

Papers Mentioning Seurat 1,512