cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1756-0500-6-43

Intra-platform comparison of 25-mer and 60-mer oligonucleotide Nimblegen DNA microarrays
Cited by: 3
Author(s): Stéphane Fénart, Malika Chabi, Sophie Gallina, Rudy Huis, Godfrey Neutelings, Nathalie Rivière, Brigitte Thomasset, Simon Hawkins, Anca Lucau-Danila
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13104-016-2113-4

Thermodynamically optimal whole-genome tiling microarray design and validation
Cited by: 6
Author(s): Hyejin Cho, Hui‐Hsien Chou
Software Mentions: 1
Published: over 8 years ago

10.1186/1756-0500-7-360

Application of next generation sequencing to CEPH cell lines to discover variants associated with FDA approved chemotherapeutics
Cited by: 5
Author(s): Gunjan Hariani, Ernest J. Lam, Tammy M. Havener, Pui Yan Kwok, Howard L. McLeod, Michael J. Wagner, Alison A. Motsinger‐Reif
Software Mentions: 1
Published: over 10 years ago

10.1186/1756-0500-3-39

Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation
Cited by: 26
Author(s): Elizabeth A. Tindall, Desiree C. Petersen, Stina Nikolaysen, Webb Miller, Stephan C. Schuster, Vanessa M. Hayes
Software Mentions: 1
Published: almost 15 years ago

10.1186/1756-0500-3-158

Animal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators
Cited by: 18
Author(s): Madeleine Matias, Kenny M. Gomolplitinant, Dorjee G. Tamang, Milton H. Saier
Software Mentions: 1
Published: over 14 years ago

10.1186/1756-0500-3-24

Non-coding RNAs change their expression profile after Retinoid induced differentiation of the promyelocytic cell line NB4
Cited by: 28
Author(s): Annalisa Rossi, Oscar Fernando D’Urso, Graziana Gatto, Palmiro Poltronieri, Manuela Ferracin, Paolo Remondelli, Massimo Negrini, Maria Gabriella Caporaso, Stefano Bonatti, Massimo Mallardo
Software Mentions: 1
Published: almost 15 years ago

10.1186/s13104-019-4764-4

Reliability of crowdsourcing as a method for collecting emotions labels on pictures
Cited by: 6
Author(s): Olga Korovina, Marcos Báez, Fabio Casati
Software Mentions: 1
Published: about 5 years ago

10.1186/s13104-016-2296-8

Immunoassay of S-adenosylmethionine and S-adenosylhomocysteine: the methylation index as a biomarker for disease and health status
Cited by: 22
Author(s): Xiujuan Hao, Yan Huang, Ming Qiu, Chunlin Yin, Haiyan Ren, Hongjie Gan, Huijun Li, Yaxia Zhou, Jiazhi Xia, Wenting Li, Lijuan Guo, Isaac Angres
Software Mentions: 1
Published: almost 8 years ago

10.1186/2052-1847-6-6

Cardiac performance, biomarkers and gene expression studies in previously sedentary men participating in half-marathon training
Cited by: 8
Author(s): Danica D. Vance, Gordon L. Chen, Mark Stoutenberg, Robert J. Myerburg, Kevin A. Jacobs, Lubov Nathanson, Arlette C. Perry, David Seo, Pascal J. Goldschmidt‐Clermont, Evadnie Rampersaud
Software Mentions: 1
Published: almost 11 years ago

10.1186/1472-6807-10-S1-S2

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers
Cited by: 16
Author(s): Peng Chen, Jinyan Li
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2482-14-18

Use of human fibrin glue (Ti sseel) versus sta ples for mesh fixation in laparoscopic transabdominal preperitoneal hernioplasty (TISTA): a randomized controlled trial (NCT01641718)
Cited by: 2
Author(s): Sascha Müller, René Warschkow, Ulrich Beutner, Cornelia Lüthi, Kristjan Ukegjini, Bruno M. Schmied, Ignazio Tarantino
Software Mentions: 1
Published: over 10 years ago

10.1186/s12893-016-0126-5

Emergency radiological examination of the externally stabilized pelvis – there is a catch to it: lessons learned from two cases with symphyseal disruption despite initial inconspicuous computed tomography
Cited by: 3
Author(s): Jörg Bayer, Thorsten Hammer, Dirk Maier, Norbert P. Südkamp, Oliver Hauschild
Software Mentions: 1
Published: over 8 years ago

10.1186/1752-0509-5-2

Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation
Cited by: 7
Author(s): Patrik Sahlin, Pontus Melke, Henrik Jönsson
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-5-52

A computational framework for gene regulatory network inference that combines multiple methods and datasets
Cited by: 33
Author(s): R. Gupta, Anna Stincone, Philipp Antczak, Sarah M. Durant, Roy Bicknell, Andréas Bikfalvi, Francesco Falciani
Software Mentions: 1
Published: over 13 years ago

10.1186/1752-0509-3-20

Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation
Cited by: 32
Author(s): Albert C. Huang, Limei Hu, Stuart Kauffman, Wei Zhang, Ilya Shmulevich
Software Mentions: 1
Published: almost 16 years ago

10.1186/1752-0509-6-112

Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study
Cited by: 13
Author(s): Mohammed Alshalalfa, Gary D. Bader, Anna Goldenberg, Quaid Morris, Reda Alhajj
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12918-015-0215-6

Mathematical analysis of the regulation of competing methyltransferases
Cited by: 21
Author(s): Michael C. Reed, Mary V. Gamble, Megan N. Hall, H. Frederik Nijhout
Software Mentions: 1
Published: about 9 years ago

10.1186/1752-0509-3-11

A Drosophila systems model of pentylenetetrazole induced locomotor plasticity responsive to antiepileptic drugs
Cited by: 26
Author(s): Farhan Mohammad, Priyanka Singh, Abhay Sharma
Software Mentions: 1
Published: almost 16 years ago

10.1186/1752-0509-7-S4-S1

A novel approach to minimize false discovery rate in genome-wide data analysis
Cited by: 2
Author(s): Yuanzhe Bei, Pengyu Hong
Software Mentions: 1
Published: almost 12 years ago

10.1186/1752-0509-6-68

Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis
Cited by: 116
Author(s): Jihong Fu, Wentao Tang, Peng Du, Guanghui Wang, Wei Chen, Jingming Li, Yunxiang Zhu, Jun Gao, Long Cui
Software Mentions: 1
Published: over 12 years ago

10.1186/1752-0509-6-152

Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach
Cited by: 32
Author(s): Shengjun Fan, Qiang Geng, Zhenyu Pan, Xin Li, Lu Tie, Yan Pan, Xuejun Li
Software Mentions: 1
Published: almost 12 years ago

10.1186/1752-0509-4-177

Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses
Cited by: 52
Author(s): Harin Kanani, Bhaskar Dutta, Maria I. Klapa
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-5-158

Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network
Cited by: 22
Author(s): Liu Hui, Jianzhong Su, Junhua Li, Hongbo Liu, Jie Lv, Boyan Li, Hong Qiao, Yan Zhang
Software Mentions: 1
Published: about 13 years ago

10.1186/1752-0509-7-120

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress
Cited by: 65
Author(s): Qinghua Wang, Keerthi P. Venkataramanan, Hongzhan Huang, Eleftherios T. Papoutsakis, Cathy H. Wu
Software Mentions: 1
Published: about 11 years ago

10.1186/1752-0509-4-51

Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma
Cited by: 229
Author(s): Huiqing Liu, A. Rose Brannon, Anupama Reddy, Gabriela Alexe, Michael Seiler, Alexandra Arreola, Jay Oza, Ming Yao, David Juan, Louis S. Liou, Shridar Ganesan, Arnold J. Levine, W. Kimryn Rathmell, Gyan Bhanot
Software Mentions: 1
Published: over 14 years ago

10.1186/1752-0509-5-99

Integrative network analysis reveals active microRNAs and their functions in gastric cancer
Cited by: 79
Author(s): Chien Wei Tseng, Lin Chen, Chiung Nien Chen, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: over 13 years ago

10.1186/1752-0509-7-S2-S10

HSA: A Heuristic Splice Alignment Tool
Cited by: 7
Author(s): Jingde Bu, Xuebin Chi, Zhong Jin
Software Mentions: 1
Published: about 11 years ago

10.1186/1752-0509-8-S2-S8

A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease
Cited by: 23
Author(s): Jörg Menche, Amitabh Sharma, Michael H. Cho, Ruth Mayer, Stephen I. Rennard, Bartolomé R. Celli, Bruce E. Miller, Nick Locantore, Ruth Tal‐Singer, Soumitra Ghosh, Chris Larminie, Glyn Bradley, John Riley, Àlvar Agustí, Edwin K. Silverman, Albert‐László Barabási
Software Mentions: 1
Published: over 10 years ago

10.1186/s12917-016-0904-4

A frameshift mutation in MOCOS is associated with familial renal syndrome (xanthinuria) in Tyrolean Grey cattle
Cited by: 12
Author(s): Leonardo Murgiano, Vidhya Jagannathan, Christian Piffer, Inmaculada Diez-Prieto, Marilena Bolcato, Arcangelo Gentile, Cord Drögemüller
Software Mentions: 1
Published: almost 8 years ago

10.1186/1746-6148-6-49

Ovine serum biomarkers of early and late phase scrapie
Cited by: 14
Author(s): Isabelle Batxelli-Molina, Nicolas Salvetat, Olivier Andréoletti, Luc Guerrier, Guillaume Vicat, Franck Molina, Chantal Mourton-Gilles
Software Mentions: 1
Published: almost 15 years ago

10.1186/1746-6148-8-205

Transcriptomic markers meet the real world: finding diagnostic signatures of corticosteroid treatment in commercial beef samples
Cited by: 10
Author(s): Sara Pegolo, Guglielmo Gallina, Clara Montesissa, Francesca Capolongo, Serena Ferraresso, Caterina Pellizzari, Lisa Poppi, Massimo Castagnaro, Luca Bargelloni
Software Mentions: 1
Published: about 12 years ago

10.1186/1746-6148-8-65

Evaluating observer agreement of scoring systems for foot integrity and footrot lesions in sheep
Cited by: 23
Author(s): Alessandro Foddai, Laura Green, Sarah Mason, Jasmeet Kaler
Software Mentions: 1
Published: over 12 years ago

10.1136/bmjgh-2020-002613

Long-term outcomes for children with disability and severe acute malnutrition in Malawi
Cited by: 8
Author(s): Natasha Lelijveld, Nora Groce, Seema Patel, Theresa Nnensa, Emmanuel Chimwezi, Melissa Gladstone, Macpherson Mallewa, Jonathan C. K. Wells, Andrew Seal, Marko Kerac
Software Mentions: 1
Published: about 4 years ago

10.1136/bmjopen-2018-027548

TAME trial: a multi-arm phase II randomised trial of four novel interventions for malnutrition enteropathy in Zambia and Zimbabwe - a study protocol
Cited by: 5
Author(s): Paul Kelly, Lauren N. Bell, Beatrice Amadi, Mutsa Bwakura‐Dangarembizi, Kelley VanBuskirk, Kanta Chandwe, Miyoba Chipunza, Deophine Ngosa, Nivea Chulu, Susan Hill, Simon Murch, Raymond J. Playford, Andrew J. Prendergast
Software Mentions: 1
Published: about 5 years ago

10.29252/NIRP.BCN.9.2.107

Stress and Perception of Emotional Stimuli: Long-term Stress Rewiring the Brain
Cited by: 14
Author(s): Reza Khosrowabadi
Software Mentions: 1
Published: over 6 years ago

10.1186/1744-9081-4-8

MEG event-related desynchronization and synchronization deficits during basic somatosensory processing in individuals with ADHD
Cited by: 55
Author(s): Colleen Dockstader, William Gaetz, Douglas Cheyne, Frank Wang, F. Xavier Castellanos, Rosemary Tannock
Software Mentions: 1
Published: almost 17 years ago

10.1186/1744-9081-10-32

Multilevel analysis of facial expressions of emotion and script: self-report (arousal and valence) and psychophysiological correlates
Cited by: 17
Author(s): Michela Balconi, Maria Elide Vanutelli, Roberta Finocchiaro
Software Mentions: 1
Published: almost 11 years ago

10.3758/s13428-014-0509-4

Affective norms for 1,586 polish words (ANPW): Duality-of-mind approach
Cited by: 73
Author(s): Kamil K. Imbir
Software Mentions: 1
Published: about 10 years ago

10.3390/bs10050092

Eye Movements in Response to Pain-Related Feelings in the Presence of Low and High Cognitive Loads
Cited by: 1
Author(s): Ramtin Zargari Marandi, Camilla Ann Fjelsted, Iris Hrustanovic, Rikke Olesen, Parisa Gazerani
Software Mentions: 1
Published: over 4 years ago

10.1186/1756-0381-5-4

Weighted multiple testing procedures for genomic studies
Cited by: 13
Author(s): Jiang Gui, Tor D. Tosteson, Mark E. Borsuk
Software Mentions: 1
Published: over 12 years ago

10.1093/bioinformatics/btt113

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
Cited by: 208
Author(s): Jon C. Ison, Matúš Kalaš, Inge Jonassen, Dan Bolser, Mahmut Uludağ, Hamish McWilliam, James Malone, Rodrigo López, Steve Pettifer, Peter Rice
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/bty483

TranscriptClean: variant-aware correction of indels, mismatches and splice junctions in long-read transcripts
Cited by: 44
Author(s): Dana Wyman, A Mortazavi
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btt403

nhmmer: DNA homology search with profile HMMs
Cited by: 604
Author(s): Travis J. Wheeler, Sean R. Eddy
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/btu314

SAMBLASTER: fast duplicate marking and structural variant read extraction
Cited by: 619
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btv098

Sambamba: fast processing of NGS alignment formats
Cited by: 1,278
Author(s): А. В. Тарасов, Albert J. Vilella, Edwin Cuppen, Isaäc J. Nijman, Pjotr Prins
Software Mentions: 1
Published: almost 10 years ago

10.1093/bioinformatics/bty408

PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data
Cited by: 25
Author(s): Cheng Chang, Kaikun Xu, Chaoping Guo, Wang Jin-xia, Qi Yan, Jian Zhang, Fuchu He, Yunping Zhu
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btu390

The Scramble conversion tool
Cited by: 39
Author(s): James K. Bonfield
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btt601

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
Cited by: 82
Author(s): André Schumacher, Luca Pireddu, Matti Niemenmaa, Aleksi Kallio, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko
Software Mentions: 1
Published: about 11 years ago

10.1093/bioinformatics/bts456

YAHA: fast and flexible long-read alignment with optimal breakpoint detection
Cited by: 63
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: over 12 years ago

10.1007/s00422-013-0574-2

Revealing instances of coordination among multiple cortical areas
Cited by: 10
Author(s): Moshe Abeles
Software Mentions: 1
Published: about 11 years ago

10.1186/1745-6150-6-50

Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome
Cited by: 46
Author(s): Manfredo J. Seufferheld, Kyung Mo Kim, James B. Whitfield, Alejandro A. Valerio, Gustavo Caetano‐Anollés
Software Mentions: 1
Published: almost 14 years ago

10.1186/s40659-019-0216-9

Intestinal transcriptional profiling reveals fava bean-induced immune response in DBA/1 mice
Cited by: 1
Author(s): Guankui Du, Mochao Xiao, Quangang Zhu, Chen Zhou, Ao Wang, Wei Cai
Software Mentions: 1
Published: over 5 years ago

10.3390/biology1010005

Biomarker Gene Signature Discovery Integrating Network Knowledge
Cited by: 27
Author(s): Yupeng Cun, Holger Fröhlich
Software Mentions: 1
Published: over 12 years ago

10.3390/biology10070578

Influence of Varying Dietary ω6 to ω3 Fatty Acid Ratios on the Hepatic Transcriptome, and Association with Phenotypic Traits (Growth, Somatic Indices, and Tissue Lipid Composition), in Atlantic Salmon (Salmo salar)
Cited by: 2
Author(s): Tomer Katan, Xi Xue, Albert Caballero‐Solares, Richard G. Taylor, Christopher C. Parrish, Matthew L. Rise
Software Mentions: 1
Published: over 3 years ago

10.3390/biology6010014

MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data
Cited by: 2
Author(s): Christopher Noune, Caroline Hauxwell
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40364-021-00303-x

LncRNAs serve as novel biomarkers for diagnosis and prognosis of childhood ALL
Cited by: 9
Author(s): Xuanmei Huang, Libin Huang, Qing Xie, Ling Zhang, Shaohui Huang, Mingye Hong, Jiangbin Li, Zunnan Huang, Hua Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12938-021-00930-3

Extended classifier system with continuous real-coded variables for feature extraction of instantaneous pulse-rate variability and respiration of individuals with gaming disorder
Cited by: 1
Author(s): Hung Ming, Tzu Chien Hsiao
Software Mentions: 1
Published: about 3 years ago

10.1186/s12938-021-00882-8

Event-related EEG oscillatory responses elicited by dynamic facial expression
Cited by: 1
Author(s): Tuba Aktürk, Tom A. de Graaf, Yasemin Abra, Sevilay Şahoğlu-Göktaş, Dilek Özkan, Aysun Kula, Bahar Güntekin
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-925X-13-81

The influence of emotion on keyboard typing: an experimental study using visual stimuli
Cited by: 12
Author(s): Po-Ming Lee, Wei-Hsuan Tsui, Tzu‐Chien Hsiao
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-925X-3-34

Review and standardization of cell phone exposure calculations using the SAM phantom and anatomically correct head models
Cited by: 24
Author(s): Brian B. Beard, Wolfgang Kainz
Software Mentions: 1
Published: about 20 years ago

10.1186/s12938-021-00848-w

Attention-based multi-scale features fusion for unobtrusive atrial fibrillation detection using ballistocardiogram signal
Cited by: 7
Author(s): Fangfang Jiang, Chuhang Hong, Tianqing Cheng, Haoqian Wang, Bowen Xu, Biyong Zhang
Software Mentions: 1
Published: almost 4 years ago

10.2349/biij.3.1.e25

Using magnetoencephalography to investigate brain activity during high frequency deep brain stimulation in a cluster headache patient
Cited by: 18
Author(s): NJ Ray, Morten L. Kringelbach, Ned Jenkinson, Owen Slf., Paul Davies, S Wang, Nick de Pennington, PC Hansen, John Stein, TZ Aziz
Software Mentions: 1
Published: almost 18 years ago

10.1155/2015/492395

Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes
Cited by: 31
Author(s): Madeeha Aqil, Saurav Mallik, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Shahid Jameel
Software Mentions: 1
Published: almost 10 years ago

10.1155/2018/8475463

Siji Antiviral Mixture Protects against CA16 Induced Brain Injury through Inhibiting PERK/STAT3/NF-κB Pathway
Cited by: 1
Author(s): Huimin Xiao, Ruiyang Zhao, Yue He, Yang Liu, Qin He, Siwang Wang, Fei Chen
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/8595473

Contributions of Gene Modules Regulated by Essential Noncoding RNA in Colon Adenocarcinoma Progression
Cited by: 0
Author(s): Chunhua Li, Xihe Yu, Jianping Lu, Lei Zheng, Dahua Xu, Zelong Xu, Liqiang Wang, Ying Cui, Yeshuang Li, Hong Wang, Jiankai Xu, Kongning Li
Software Mentions: 1
Published: over 4 years ago

10.1155/2013/317926

Profiling of Hepatocellular Carcinoma Cell Cycle Regulating Genes Targeted by Calycosin
Cited by: 14
Author(s): Dongqing Zhang, Shufang Wang, Li Zhu, Yao Tian, Haibao Wang, Yuan Zhuang, Yu Li, Deqing Wang
Software Mentions: 1
Published: almost 12 years ago

10.1155/2015/625192

Age-Specific Gene Expression Profiles of Rhesus Monkey Ovaries Detected by Microarray Analysis
Cited by: 8
Author(s): Hengxi Wei, Xiangjie Liu, Jihong Yuan, Li Li, Dongdong Zhang, Xiaolong Guo, Lin Liu, Shouquan Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1155/2015/949624

Transcriptional Changes Associated with Long-Term Left Ventricle Volume Overload in Rats: Impact on Enzymes Related to Myocardial Energy Metabolism
Cited by: 9
Author(s): Élise Roussel, Marie‐Claude Drolet, Élisabeth Walsh-Wilkinson, Wahiba Dhahri, Dominic Lachance, Suzanne Gascon, Otman Sarrhini, Jacques Rousseau, Roger Lecomte, Jacques Couët, Marie Arsenault
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/3843295

Breast Tumor Detection and Classification Using Intravoxel Incoherent Motion Hyperspectral Imaging Techniques
Cited by: 6
Author(s): Si-Wa Chan, Yung-Chieh Chang, Po-Chiun Huang, Yen-Chieh Ouyang, Yu-Tzu Chang, Ruey-Feng Chang, Jyh‐Wen Chai, Clayton Chi‐Chang Chen, Hsian‐Min Chen, Chein‐I Chang, Chia-Chieh Lin
Software Mentions: 1
Published: over 5 years ago

10.1155/2014/543673

Complex Network-Driven View of Genomic Mechanisms Underlying Parkinson’s Disease: Analyses in Dorsal Motor Vagal Nucleus, Locus Coeruleus, and Substantia Nigra
Cited by: 22
Author(s): Beatriz Raposo Corradini, Priscila Iamashita, Edilaine Tampellini, José Marcelo Farfel, Lea T. Grinberg, Carlos Alberto Moreira-Filho
Software Mentions: 1
Published: almost 11 years ago

10.1155/2018/5895628

Global, Survival, and Apoptotic Transcriptome during Mouse and Human Early Embryonic Development
Cited by: 9
Author(s): D. Haouzi, I. Boumela, Karim Chébli, S. Hamamah
Software Mentions: 1
Published: about 6 years ago

10.1155/2015/561819

Targeted Next-Generation Sequencing Reveals Hot Spots and Doubly Heterozygous Mutations in Chinese Patients with Familial Cardiomyopathy
Cited by: 9
Author(s): Yue Zhao, Yue Feng, Yunmei Zhang, Xiaoqing Ding, Yuzhu Song, A-Mei Zhang, Li Liu, Hong Zhang, Jindong Ding, Xueshan Xia
Software Mentions: 1
Published: almost 10 years ago

10.1155/2017/6423021

Bioinformatics Genes and Pathway Analysis for Chronic Neuropathic Pain after Spinal Cord Injury
Cited by: 36
Author(s): Guan Zhang, Ping Yang
Software Mentions: 1
Published: almost 8 years ago

10.1155/2016/6125204

Structural and Histochemical Alterations in the Aortic Valves of Elderly Patients: A Comparative Study of Aortic Stenosis, Aortic Regurgitation, and Normal Valves
Cited by: 19
Author(s): Katsutoshi Miura, Hideki Katoh
Software Mentions: 1
Published: almost 9 years ago

10.1155/2014/171487

Alteration of Interictal Brain Activity in Patients with Temporal Lobe Epilepsy in the Left Dominant Hemisphere: A Resting-State MEG Study
Cited by: 4
Author(s): Haitao Zhu, Jing Zhu, Tiezhu Zhao, Yong Wu, Hongyi Liu, Ting Wu, Lu Yang, Yuanjie Zou, Rui Zhang, Gang Zheng
Software Mentions: 1
Published: almost 11 years ago

10.1155/2014/527029

Survey of Network-Based Approaches to Research of Cardiovascular Diseases
Cited by: 8
Author(s): Anida Sarajlić, Nataša Pržulj
Software Mentions: 1
Published: almost 11 years ago

10.1155/2014/850802

ECR-MAPK Regulation in Liver Early Development
Cited by: 4
Author(s): Xiu-Ju Zhao, Hexian Zhuo
Software Mentions: 1
Published: almost 11 years ago

10.1155/2013/354582

Comparative Gene Expression Profiling in Human Cumulus Cells according to Ovarian Gonadotropin Treatments
Cited by: 33
Author(s): Saïd Assou, D. Haouzi, H. Déchaud, Anna Gala, A. Ferrières, S. Hamamah
Software Mentions: 1
Published: almost 12 years ago

10.1155/2014/651751

Microarray-Based RNA Profiling of Breast Cancer: Batch Effect Removal Improves Cross-Platform Consistency
Cited by: 19
Author(s): Martin Jakob Larsen, Mads Thomassen, Qihua Tan, Kristina Pilekær Sørensen, Torben A. Kruse
Software Mentions: 1
Published: almost 11 years ago

10.1155/2014/951937

Endometrial Receptivity Profile in Patients with Premature Progesterone Elevation on the Day of hCG Administration
Cited by: 46
Author(s): D. Haouzi, Laurence Bissonnette, Anna Gala, Saïd Assou, Frida Entezami, Hélène Perrochia, H. Déchaud, Jean‐Noël Hugues, S. Hamamah
Software Mentions: 1
Published: almost 11 years ago

10.1155/2013/317912

Development of Pineapple Microsatellite Markers and Germplasm Genetic Diversity Analysis
Cited by: 13
Author(s): Shuo Feng, Tong HeLin, Chun‐Xiang You, Jingyi Wang, Yeyuan Chen, Guangming Sun, Jun He, Yan Wu
Software Mentions: 1
Published: almost 12 years ago

10.1155/2014/536591

Computational Analysis of mRNA Expression Profiles Identifies theITGFamily andPIK3R3as Crucial Genes for Regulating Triple Negative Breast Cancer Cell Migration
Cited by: 13
Author(s): Sukhontip Klahan, Mei-Shin Wu, Edward Hsi, Chi‐Cheng Huang, Ming‐Feng Hou, Wei Chiao Chang
Software Mentions: 1
Published: almost 11 years ago

10.1155/2016/8208904

Expression of Migration-Related Genes in Human Colorectal Cancer and Activity of a Disintegrin and Metalloproteinase 17
Cited by: 19
Author(s): Katarzyna Walkiewicz, Paweł Kozieł, Martyna Bednarczyk, Adam Błażelonis, Urszula Mazurek, Małgorzata Muc-Wierzgoń
Software Mentions: 1
Published: almost 9 years ago

10.1155/2014/138410

msiDBN: A Method of Identifying Critical Proteins in Dynamic PPI Networks
Cited by: 4
Author(s): Yuan Zhang, Nan Du, Kang Li, Jinchao Feng, Kebin Jia, Aidong Zhang
Software Mentions: 1
Published: almost 11 years ago

10.7603/s40681-014-0010-5

Coronary artery aneurysms occurrence risk analysis between Kawasaki disease and LRP1B gene in Taiwanese children
Cited by: 8
Author(s): Ying Lin, Xiang Liu, Jen‐Ping Chang, Wen Kuei Chien, Jin Hua Chen, Hsinyi Tsang, Chien Hui Hung, Ting Hsu Lin, Shaohui Huang, Chien-Chang Liao, Cheng Wen Lin, Tsung Jung Ho, Fuu Jen Tsai
Software Mentions: 1
Published: over 10 years ago

10.3390/biomedicines9091258

Master Regulators of Epithelial-Mesenchymal Transition and WNT Signaling Pathways in Juvenile Nasopharyngeal Angiofibromas
Cited by: 2
Author(s): Naiade Calanca, Sara Martoreli Silveira Binato, Sabrina Daniela da Silva, Helena Brentani, Luiz Ubirajara Sennes, Clóvis Antônio Lopes Pinto, Maria Aparecida Custódio Domingues, Carlos Eduardo Fonseca-Alves, Cláudia Aparecida Rainho, Sílvia Regina Rogatto
Software Mentions: 1
Published: about 3 years ago

10.3390/biom6040042

CoverageAnalyzer (CAn): A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles
Cited by: 16
Author(s): Ralf Hauenschild, Stephan Werner, Lyudmil Tserovski, Andreas Hildebrandt, Yuri Motorin, Mark Helm
Software Mentions: 1
Published: about 8 years ago

10.3390/biom7010003

DNA Methylation Targeting: The DNMT/HMT Crosstalk Challenge
Cited by: 93
Author(s): Omar Castillo-Aguilera, Patrick Depreux, Ludovic Halby, Paola B. Arimondo, Laurence Goossens
Software Mentions: 1
Published: almost 8 years ago

10.1042/BSR20181016

The effect of HMGB1 on the clinicopathological and prognostic features of cervical cancer
Cited by: 12
Author(s): Li Pan, Meng-Fei Xu, Hongwei Cai, Niresh Thapa, Cancan He, Zhen Song
Software Mentions: 1
Published: over 5 years ago

10.3390/bios10110162

Carbon-Based Quantum Dots for Electrochemical Detection of Monoamine Neurotransmitters—Review
Cited by: 15
Author(s): Saheed E. Elugoke, Abolanle S. Adekunle, Omolola E. Fayemi, Bhekie B. Mamba, El‐Sayed M. Sherif, Eno E. Ebenso
Software Mentions: 1
Published: about 4 years ago

10.1186/s13068-015-0415-8

SorGSD: a sorghum genome SNP database
Cited by: 41
Author(s): Hong Luo, Wenming Zhao, Yanqing Wang, Yan Xia, Xiaoyuan Wu, Limin Zhang, Bixia Tang, Junwei Zhu, Fang Lü, Zhenglin Du, Wubishet A. Bekele, Shuaishuai Tai, David R. Jordan, Ian D. Godwin, Rod J. Snowdon, Emma Mace, Hai‐Chun Jing, Jianxun Luo
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-015-0260-9

Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum
Cited by: 30
Author(s): Keerthi P. Venkataramanan, Lie Min, Shuyu Hou, Shawn W. Jones, Matthew T. Ralston, Kelvin H. Lee, Eleftherios T. Papoutsakis
Software Mentions: 1
Published: over 9 years ago

10.1186/s13068-019-1554-0

Metabolic engineering of Bacillus amyloliquefaciens for enhanced production of S-adenosylmethionine by coupling of an engineered S-adenosylmethionine pathway and the tricarboxylic acid cycle
Cited by: 15
Author(s): Liying Ruan, Lü Li, Dian Zou, Cong Jiang, Zhiyou Wen, Shouwen Chen, Yu Deng, Xuetuan Wei
Software Mentions: 1
Published: about 5 years ago

10.1186/1754-6834-7-31

Transcriptional comparison of the filamentous fungus Neurospora crassagrowing on three major monosaccharides D-glucose, D-xylose and L-arabinose
Cited by: 53
Author(s): Jingen Li, Liangcai Lin, Yong Li, Chaoguang Tian, Yanhe Ma
Software Mentions: 1
Published: over 10 years ago

10.1038/boneres.2017.30

New insights into the vitamin D requirements during pregnancy
Cited by: 84
Author(s): Bruce W. Hollis, Carol L. Wagner
Software Mentions: 1
Published: about 7 years ago

10.1038/s41416-019-0725-x

Anti-VEGF therapy resistance in ovarian cancer is caused by GM-CSF-induced myeloid-derived suppressor cell recruitment
Cited by: 57
Author(s): Naoki Horikawa, Kaoru Abiko, Noriomi Matsumura, Tsukasa Baba, Junzo Hamanishi, Ken Yamaguchi, Ryusuke Murakami, Mana Taki, Masao Ukita, Yuko Hosoe, Masafumi Koshiyama, Ikuo Konishi, Masaki Mandai
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41416-021-01377-y

The circulating soluble form of the CD40 costimulatory immune checkpoint receptor and liver metastasis risk in rectal cancer
Cited by: 7
Author(s): Sebastian Meltzer, Annette Torgunrud, Hanna Abrahamsson, Arne M. Solbakken, Kjersti Flatmark, Svein Dueland, Kine Mari Bakke, Paula A. Bousquet, Anne Negård, Christin Johansen, Lars Gustav Lyckander, Finn Ole Larsen, Jesper Sølver Schou, Kathrine Røe Redalen, Anne Hansen Ree
Software Mentions: 1
Published: over 3 years ago

10.1038/bjc.2017.102

Decreased levels of baseline and drug-induced tubulin polymerisation are hallmarks of resistance to taxanes in ovarian cancer cells and are associated with epithelial-to-mesenchymal transition
Cited by: 36
Author(s): George E. Durán, Yan C. Wang, François Moisan, E. Brian Francisco, Branimir I. Šikić
Software Mentions: 1
Published: over 7 years ago

10.1002/brb3.686

Resting state and personality component (BIS/BAS) predict the brain activity (EEG and fNIRS measure) in response to emotional cues
Cited by: 24
Author(s): Michela Balconi, Maria Elide Vanutelli, Elisabetta Grippa
Software Mentions: 1
Published: over 7 years ago

10.1007/s40708-017-0069-3

Emotion recognition based on EEG features in movie clips with channel selection
Cited by: 89
Author(s): Mehmet Siraç Özerdem, Hasan Polat
Software Mentions: 1
Published: over 7 years ago

Projects: cran: SAM

Papers Mentioning SAM 4,566