cran: REST | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0136820

Reference Gene Selection for qPCR Analysis in Tomato-Bipartite Begomovirus Interaction and Validation in Additional Tomato-Virus Pathosystems
Cited by: 40
Author(s): A. L. M. Lacerda, Leonardo N. Fonseca, Rosana Blawid, L. S. Boiteux, S. G. Ribeiro, Ana Cristina Miranda Brasileiro
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-018-33928-4

Diet induced obesity is independent of metabolic endotoxemia and TLR4 signalling, but markedly increases hypothalamic expression of the acute phase protein, SerpinA3N
Cited by: 50
Author(s): Matthew J. Dalby, Gabriella Aviello, Alexander Ross, Alan W. Walker, Perry Barrett, Peter J. Morgan
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-34960-0

Chemically modified hCFTR mRNAs recuperate lung function in a mouse model of cystic fibrosis
Cited by: 60
Author(s): Akm Ashiqul Haque, Alexander Dewerth, Justin S. Antony, Joachim Riethmüller, G. Schweizer, Petra Weinmann, Ngadhnjim Latifi, Hanzey Yasar, Nicoletta Pedemonte, Elvira Sondo, Brian Weidensee, Anjali Ralhan, Julie Laval, Patrick Schlegel, Christian Seitz, Brigitta Loretz, Claus‐Michael Lehr, Rupert Handgretinger, Michael Kormann
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0178460

Assessing the impact of Benzo[a]pyrene on Marine Mussels: Application of a novel targeted low density microarray complementing classical biomarker responses
Cited by: 53
Author(s): Mohamed Bannı, Susanna Sforzini, Volker M. Arlt, Audrey Barranger, Lorna J. Dallas, Caterina Oliveri, Yann Aminot, Beniamina Pacchioni, Caterina Millino, Gerolamo Lanfranchi, James W. Readman, Michael N. Moore, Aldo Viarengo, Awadhesh N. Jha
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0175415

An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry
Cited by: 64
Author(s): Mónica B. Betancor, Keshuai Li, Matthew Sprague, Tora Bardal, Olga Sayanova, Sarah Usher, Lihua Han, Kjell Måsøval, Ole Torrissen, Johnathan A. Napier, Douglas R. Tocher, Rolf Erik Olsen
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0148451

Identification and Validation of Reference Genes and Their Impact on Normalized Gene Expression Studies across Cultivated and Wild Cicer Species
Cited by: 37
Author(s): D. Srinivas Reddy, Pooja Bhatnagar‐Mathur, Palakolanu Sudhakar Reddy, Katamreddy Sri Cindhuri, Adusumalli Sivaji Ganesh, Kiran K. Sharma
Software Mentions: 2
Published: over 10 years ago

10.3389/fnhum.2015.00074

Differential cerebral response to somatosensory stimulation of an acupuncture point vs. two non-acupuncture points measured with EEG and fMRI
Cited by: 27
Author(s): Till Nierhaus, Daniel Pach, Weixin Huang, Xiangyu Long, Vitaly Napadow, Stephanie Roll, Fanrong Liang, Burkhard Pleger, Arno Villringer, Claudia M. Witt
Software Mentions: 2
Published: over 11 years ago

10.3390/biology9050091

Epigenetic Changes in Host Ribosomal DNA Promoter Induced by an Asymptomatic Plant Virus Infection
Cited by: 2
Author(s): Miryam Pérez-Cañamás, Elizabeth Hevia, Carmen Hernández
Software Mentions: 1
Published: about 6 years ago

10.1242/bio.021501

New SigD-regulated genes identified in the rhizobacterium Bacillus amyloliquefaciens FZB42
Cited by: 6
Author(s): Bin Fan, Yulong Li, Aruljothi Mariappan, Anke Becker, Xiao‐Qin Wu, Rainer Borriss
Software Mentions: 1
Published: over 9 years ago

10.1242/bio.022038

The impact of FOXO on dopamine and octopamine metabolism in Drosophila under normal and heat stress conditions
Cited by: 17
Author(s): Н. Е. Грунтенко, N. V. Adonyeva, Elena V. Burdina, Е. К. Карпова, Olga V. Andreenkova, Daniil V. Gladkikh, Yu. Yu. Ilinsky, I. Yu. Rauschenbach
Software Mentions: 1
Published: over 9 years ago

10.1093/bioinformatics/btt547

BioServices: a common Python package to access biological Web Services programmatically
Cited by: 98
Author(s): Thomas Cokelaer, Dennis Pultz, Lea Mørch Harder, Jordi Serra-Musach, Julio Sáez-Rodríguez
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-018-4642-9

Transcriptome analysis of granulosa cells after conventional vs long FSH-induced superstimulation in cattle
Cited by: 20
Author(s): F. C. F. Dias, M. Islam Khan, Marc‐André Sirard, Gregg P. Adams, Jaswant Singh
Software Mentions: 1
Published: about 8 years ago

10.1186/s12885-015-1022-6

Dermcidin exerts its oncogenic effects in breast cancer via modulation of ERBB signaling
Cited by: 18
Author(s): Jasna Bancovik, Dayson Moreira, Daniel R. Carrasco, Jun Yao, Dale Porter, Ricardo Olímpio de Moura, Anamaria A. Camargo, Cibely C. Fontes-Oliveira, Miguel G. Malpartida, Silvia Carambula, Edouard Vannier, Bryan E. Strauss, Alda Wakamatsu, Venâncio Avancini Ferreira Alves, Ângela Flávia Logullo, Fernando Augusto Soares, Kornélia Polyák, José Ernesto Belizário
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/btu613

The Ensembl REST API: Ensembl Data for Any Language
Cited by: 144
Author(s): Andy Yates, Kathryn Beal, Stephen Keenan, William McLaren, Miguel Pignatelli, Graham R. S. Ritchie, Magali Ruffier, Kieron Taylor, Alessandro Vullo, Paul Flicek
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-12-255

Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis
Cited by: 148
Author(s): Sofía Morais, Jarunan Pratoomyot, John B. Taggart, James E. Bron, D. R. Guy, J. Gordon Bell, Douglas R. Tocher
Software Mentions: 1
Published: about 15 years ago

10.1093/bioinformatics/btt612

MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGG
Cited by: 58
Author(s): Joram M. Posma, Steven L. Robinette, Elaine Holmes, Jeremy K. Nicholson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0184712

Identify changes of brain regional homogeneity in early and later adult onset patients with first-episode depression using resting-state fMRI
Cited by: 19
Author(s): Zonglin Shen, Linling Jiang, Shuran Yang, Jing Ye, Nan Dai, Xiaoyan Liu, Na Li, Jin Lü, Fang Liu, Yi Lü, Xiaotao Sun, Yuqi Cheng, Xiufeng Xu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-016-3270-5

Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas
Cited by: 14
Author(s): B. B. Z. Vigna, Fernanda Ancelmo de Oliveira, Guilherme Toledo-Silva, Carla Cristina da Silva, Cacilda Borges do Valle, Anete Pereira de Souza
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2407-9-134

Clinical significance of Neutrophil gelatinase-associated lipocalin(NGAL) expression in primary rectal cancer
Cited by: 35
Author(s): Xiufeng Zhang, Ying Zhang, Xiaohua Zhang, Sumei Zhou, Guangli Yang, Ouchen Wang, Gui-Long Guo, Gaoyi Yang, Xiaoqu Hu
Software Mentions: 1
Published: about 17 years ago

10.1007/s10482-013-9931-3

Small chromosomes among Danish Candida glabrata isolates originated through different mechanisms
Cited by: 22
Author(s): Khadija Mohamed Ahmad, Olena P. Ishchuk, Linda Hellborg, G Jörgensen, Miha Skvarč, Jørgen Stenderup, Dorte Jørck-Ramberg, Silvia Poláková, Jure Piškur
Software Mentions: 1
Published: about 13 years ago

10.1016/j.bbalip.2013.08.007

Endocytosis and intracellular processing of BODIPY-sphingomyelin by murine CATH.a neurons
Cited by: 8
Author(s): Christoph Nusshold, Andreas Uellen, Eva Bernhart, Astrid Hammer, Sabine Damm, Andrea Wintersperger, Helga Reicher, Albin Hermetter, Ernst Malle, Wolfgang Sattler
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0064115

Effects of Finger Tapping Frequency on Regional Homogeneity of Sensorimotor Cortex
Cited by: 30
Author(s): Yating Lv, Daniel S. Margulies, Arno Villringer, Yu‐Feng Zang
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-021-07527-z

A highly mutable GST is essential for bract colouration in Euphorbia pulcherrima Willd. Ex Klotsch
Cited by: 12
Author(s): Vinicius Vilperte, Robert Boehm, Thomas Debener
Software Mentions: 1
Published: about 5 years ago

10.3762/bjnano.12.62

Silver nanoparticles induce the cardiomyogenic differentiation of bone marrow derived mesenchymal stem cells via telomere length extension
Cited by: 37
Author(s): Khosro Adibkia, Ali Ehsani, Asma Jodaei, Ezzatollah Fathi, Raheleh Farahzadi, Mohammad Barzegar-Jalali
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0069199

Abnormal Regional Homogeneity in Patients with Essential Tremor Revealed by Resting-State Functional MRI
Cited by: 73
Author(s): Weidong Fang, Fajin Lv, Tianyou Luo, Oumei Cheng, Wei Liao, Ke Sheng, Xuefeng Wang, Fei Wu, Yun Hu, Jie Luo, Qing Yang, Han Zhang
Software Mentions: 1
Published: almost 13 years ago

10.1155/2018/5024520

Neural Basis of Depression Related to a Dominant Right Hemisphere: A Resting-State fMRI Study
Cited by: 33
Author(s): Mi Li, Hongpei Xu, Shengfu Lu
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-015-1738-3

Use of the de novo transcriptome analysis of silver-leaf nightshade (Solanum elaeagnifolium) to identify gene expression changes associated with wounding and terpene biosynthesis
Cited by: 23
Author(s): Aphrodite Tsaballa, Alexandros K. Nikolaidis, Foteini Trikka, Codruţa Ignea, Sotirios C. Kampranis, Antonios M. Makris, Anagnostis Argiriou
Software Mentions: 1
Published: almost 11 years ago

10.1186/1744-9081-8-44

Altered spontaneous activity in young chronic cigarette smokers revealed by regional homogeneity
Cited by: 18
Author(s): Jinsong Tang, Yanhui Liao, Qijian Deng, Tieqiao Liu, Xiaogang Chen, Xuyi Wang, Xiaojun Xiang, Hongxian Chen, Wei Hao
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0070808

Brain Signature Characterizing the Body-Brain-Mind Axis of Transsexuals
Cited by: 18
Author(s): Hsiao Lun Ku, Cheng‐Jian Lin, Hsiang Tai Chao, Pei Chi Tu, Cheng Ta Li, Chou Ming Cheng, Tung Ping Su, Ying Chiao Lee, Jen Chuen Hsieh
Software Mentions: 1
Published: almost 13 years ago

10.1186/1744-9081-10-33

Reduced resting-state brain activity in the default mode network in children with (central) auditory processing disorders
Cited by: 13
Author(s): Agnieszka Pluta, Tomasz Wolak, Natalia Czajka, Monika Lewandowska, Katarzyna Cieśla, Mateusz Rusiniak, Diana Grudzień, Henryk Skarżyńśki
Software Mentions: 1
Published: over 12 years ago

10.1007/s00395-013-0330-8

Endothelial NOS (NOS3) impairs myocardial function in developing sepsis
Cited by: 33
Author(s): Annette M. van de Sandt, Rainer Windler, Axel Gödecke, Jan Ohlig, Sabrina Zander, Michael Reinartz, Jürgen Graf, Ernst E. van Faassen, Tienush Rassaf, Jürgen Schrader, Malte Kelm, Marc W. Merx
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0149934

Chilling-Mediated DNA Methylation Changes during Dormancy and Its Release Reveal the Importance of Epigenetic Regulation during Winter Dormancy in Apple (Malus x domestica Borkh.)
Cited by: 61
Author(s): Gulshan Kumar, Usha Kumari Rattan, Anil Kumar Singh
Software Mentions: 1
Published: over 10 years ago

10.1007/s00395-016-0532-y

Cardiac expression of the CREM repressor isoform CREM-IbΔC-X in mice leads to arrhythmogenic alterations in ventricular cardiomyocytes
Cited by: 22
Author(s): Jan S. Schulte, Edda Fehrmann, Marcel Tekook, Daniel Kranick, Benedikt Fels, N. Li, Xander H.T. Wehrens, Alexander Heinick, Matthias D. Seidl, Wilhelm Schmitz, Frank Müller
Software Mentions: 1
Published: over 10 years ago

10.1186/1741-7007-8-156

Leaf-cutting ant fungi produce cell wall degrading pectinase complexes reminiscent of phytopathogenic fungi
Cited by: 72
Author(s): Morten Schiøtt, Adelina Rogowska-Wrzesińska, Peter Roepstorff, Jacobus J. Boomsma
Software Mentions: 1
Published: over 15 years ago

10.3390/antiox8080303

Antioxidant, Anti-Inflammatory, and Multidrug Resistance Modulation Activity of Silychristin Derivatives
Cited by: 22
Author(s): Jitka Viktorová, Simona Dobiasová, Kateřina Řehořová, David Biedermann, Kristýna Káňová, Karolína Šeborová, Radka Václavíková, Kateřina Valentová, Tomáš Ruml, Vladimı́r Křen, Tomáš Macek
Software Mentions: 1
Published: almost 7 years ago

10.1111/j.1474-9726.2011.00781.x

Adult neurogenesis in the short‐lived teleost Nothobranchius furzeri : localization of neurogenic niches, molecular characterization and effects of aging
Cited by: 106
Author(s): Eva Terzibasi Tozzini, Mario Baumgart, Giorgia Battistoni, Alessandro Cellerino
Software Mentions: 1
Published: over 14 years ago

10.32598/bcn.9.10.80.1

Protein Kinase Cε in the Platelet and Hippocampal Tissue as a Diagnostic Biological Marker in Alzheimer Disease
Cited by: 1
Author(s): Sara Amiri, Kayhan Azadmaneshb, Marzieh Dehghan Shasaltaneh, Baharak Khoshkholgh-Sima, Nasser Naghdi
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0055965

Attenuated Vasodilator Effectiveness of Protease-Activated Receptor 2 Agonist in Heterozygous par2 Knockout Mice
Cited by: 6
Author(s): John C. Hennessey, John J. McGuire
Software Mentions: 1
Published: over 13 years ago

10.1186/s12905-019-0865-4

Evaluation of apoptosis and angiogenesis in ectopic and eutopic stromal cells of patients with endometriosis compared to non-endometriotic controls
Cited by: 33
Author(s): Ali‐Akbar Delbandi, Mahmoud Mahmoudi, Adel Shervin, Samaneh Heidari, Roya Kolahdouz‐Mohammadi, Amir‐Hassan Zarnani
Software Mentions: 1
Published: over 6 years ago

10.1186/1746-6148-9-130

HES1, a target of Notch signaling, is elevated in canine osteosarcoma, but reduced in the most aggressive tumors
Cited by: 34
Author(s): Deanna D. Dailey, Kristin P. Anfinsen, Liza E. Pfaff, E. J. Ehrhart, J. B. Charles, Tina Bjørnlund Bønsdorff, Douglas H. Thamm, Barbara E. Powers, Thora J. Jónasdóttir, Dawn L. Duval
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pgen.1004769

A Role for Taiman in Insect Metamorphosis
Cited by: 51
Author(s): Jesús Lozano, Takumi Kayukawa, Tetsuro Shinoda, Xavier Bellés
Software Mentions: 1
Published: over 11 years ago

10.1186/s12917-019-2144-x

Effect of injected dexamethasone on relative cytokine mRNA expression in bronchoalveolar lavage fluid in horses with mild asthma
Cited by: 9
Author(s): Stephanie L. Bond, Jana Hundt, Renaud Léguillette
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-8-147

Global gene expression profiling in human lung cells exposed to cobalt
Cited by: 38
Author(s): Véronique Malard, Frédéric Bérenguer, Odette Prat, Sylvie Ruat, Gérard Steinmetz, Éric Quéméneur
Software Mentions: 1
Published: over 19 years ago

10.1186/s12917-020-02385-5

Differential expression of hemolysin genes in weakly and strongly hemolytic Brachyspira hyodysenteriae strains
Cited by: 3
Author(s): Jessica Joerling, Hermann Willems, Christa Ewers, W. Herbst
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-12-195

Interactions of a pesticide/heavy metal mixture in marine bivalves: a transcriptomic assessment
Cited by: 87
Author(s): Francesco Dondero, Mohamed Bannı, Alessandro Negri, Lara Boatti, A. Dagnino, Aldo Viarengo
Software Mentions: 1
Published: about 15 years ago

10.1186/s12917-021-02816-x

Expression analysis of centrin gene in promastigote and amastigote forms of leishmania infantum iranian isolates: a promising target for live attenuated vaccine development against canine leishmaniasis
Cited by: 1
Author(s): Mohammad Javad Abbaszadeh Afshar, Samira Elikaee, Reza Saberi, Sina Mohtasebi, Mehdi Mohebali
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1003085

Translational Control by the DEAD Box RNA Helicase belle Regulates Ecdysone-Triggered Transcriptional Cascades
Cited by: 42
Author(s): Robert J. Ihry, Anne L. Sapiro, Arash Bashirullah
Software Mentions: 1
Published: over 13 years ago

10.1186/s12917-015-0382-0

Design and evaluation of a unique SYBR Green real-time RT-PCR assay for quantification of five major cytokines in cattle, sheep and goats
Cited by: 53
Author(s): Carinne Puech, Laurence Dedieu, Isabelle Chantal, Valérie Rodrigues
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-13-410

Hepatic transcriptome analysis of inter-family variability in flesh n-3 long-chain polyunsaturated fatty acid content in Atlantic salmon
Cited by: 32
Author(s): Sofía Morais, John B. Taggart, D. R. Guy, J. Gordon Bell, Douglas R. Tocher
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-11-386

Efficiency clustering for low-density microarrays and its application to QPCR
Cited by: 10
Author(s): Eric F. Lock, Ryan Ziemiecki, J. S. Marron, Dirk P. Dittmer
Software Mentions: 1
Published: almost 16 years ago

10.1186/s13102-021-00266-4

The effect of omega3 fatty acid supplementation on PPARγ and UCP2 expressions, resting energy expenditure, and appetite in athletes
Cited by: 5
Author(s): Sara Moradi, Mohammad Reza Alivand, Yaser Khajebishak, Mohamad Asghari-Jafarabadi, Maedeh Alipour, Philip D. Chilibeck, Beitullah Alipour
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1006774

Hairless-binding deficient Suppressor of Hairless alleles reveal Su(H) protein levels are dependent on complex formation with Hairless
Cited by: 23
Author(s): Praxenthaler Heiko, Anja C. Nagel, Adriana Schulz, Mirjam Zimmermann, Markus Meier, Hannes Schmid, Anette Preiss, Dieter Maier
Software Mentions: 1
Published: about 9 years ago

10.1186/1756-0500-4-339

Reference genes for quantitative reverse transcription-polymerase chain reaction expression studies in wild and cultivated peanut
Cited by: 60
Author(s): Carolina Vianna Morgante, P. M. Guimarães, Andressa Cq Martins, Ana Cláudia Guerra Araújo, S. C. de M. Leal-Bertioli, David J. Bertioli, Ana Cristina Miranda Brasileiro
Software Mentions: 1
Published: over 14 years ago

10.1371/currents.md.e246cf493a7edb1669f42fb735936b46

Effects of Dantrolene Therapy on Disease Phenotype in Dystrophin Deficient mdx Mice
Cited by: 7
Author(s): James L. Quinn, Tony Huynh, Kitipong Uaesoontrachoon, Kathleen Tatem, Aditi Phadke, J. H. van der Meulen, Qing Yu, K. Nagaraju
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pcbi.1006980

Experimentally guided computational antibody affinity maturation with de novo docking, modelling and rational design
Cited by: 33
Author(s): Daniel Cannon, Lu Shan, Qun Du, Lena Shirinian, Keith Rickert, Kim Rosenthal, Martin Korade, Lilian E. van Vlerken-Ysla, Andrew Buchanan, Tristan J. Vaughan, Melissa Damschroder, Bojana Popović
Software Mentions: 1
Published: about 7 years ago

10.1186/1756-0500-5-18

Validation of a set of reference genes to study response to herbicide stress in grasses
Cited by: 33
Author(s): Christelle Petit, Fanny Pernin, Jean‐Marie Heydel, Christophe Délye
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-14-235

Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development
Cited by: 37
Author(s): Andréane Rabatel, Gérard Febvay, Karen Gaget, G. Duport, Patrice Bâa-Puyoulet, Panagiotis Sapountzis, Nadia Bendridi, Marjolaine Rey, Yvan Rahbé, Hubert Charles, Federica Calevro, Stefano Colella
Software Mentions: 1
Published: about 13 years ago

10.1186/s13104-017-2947-4

Comparison of Bispectral Index™ values during the flotation restricted environmental stimulation technique and results for stage I sleep: a prospective pilot investigation
Cited by: 3
Author(s): C. Michael Dunham, Jesse V. McClain, Amanda L. Burger
Software Mentions: 1
Published: over 8 years ago

10.1186/1756-0500-4-104

Validation of reference genes for quantitative RT-qPCR studies of gene expression in Atlantic cod (Gadus morhua l.) during temperature stress
Cited by: 43
Author(s): Ingrid A.S. Aursnes, Anne Lise Rishovd, Hans Erik Karlsen, Tor Gjøen
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pbio.0060271

Stem Cells Have Different Needs for REST
Cited by: 14
Author(s): Ola Hermanson
Software Mentions: 1
Published: over 17 years ago

10.3390/plants10020269

Involvement of Polyamine Metabolism in the Response of Medicago truncatula Genotypes to Salt Stress
Cited by: 16
Author(s): Chrystalla Antoniou, Xavier Zarza, Gholamreza Gohari, Sima Panahirad, Panagiota Filippou, Antonio F. Tiburcio, Vasileios Fotopoulos
Software Mentions: 1
Published: over 5 years ago

10.1186/1756-0500-5-616

Toll-like receptor ligands induce the expression of interferon-gamma and interleukin-17 in chicken CD4+ T cells
Cited by: 22
Author(s): Michael St. Paul, Neda Barjesteh, Sarah Paolucci, Yanlong Pei, Shayan Sharif
Software Mentions: 1
Published: over 13 years ago

10.1186/s13104-018-3411-9

The effect of lipopolysaccharide on the expression level of immunomodulatory and immunostimulatory factors of human amniotic epithelial cells
Cited by: 11
Author(s): Ramezan Ali Taheri, Hossein Motedayyen, Somayeh Ghotloo, Mohsen Masjedi, Nariman Mosaffa, Abbas Mirshafiey, Mahmood Saffari
Software Mentions: 1
Published: about 8 years ago

10.1186/s12859-017-1688-7

quantGenius: implementation of a decision support system for qPCR-based gene quantification
Cited by: 35
Author(s): Špela Baebler, Miha Svalina, Marko Petek, Katja Stare, Ana Rotter, Maruša Pompe-Novak, Kristina Gruden
Software Mentions: 1
Published: about 9 years ago

10.3390/antiox9090795

Cyst Nematode Infection Elicits Alteration in the Level of Reactive Nitrogen Species, Protein S-Nitrosylation and Nitration, and Nitrosoglutathione Reductase in Arabidopsis thaliana Roots
Cited by: 8
Author(s): Mateusz Labudda, Elżbieta Różańska, Marta Gietler, Justyna Fidler, Ewa Muszyńska, Beata Prabucka, Iwona Morkunas
Software Mentions: 1
Published: almost 6 years ago

10.15171/apb.2017.075

Effects of Ectoine on Behavior and Candidate Genes Expression in ICV-STZ Rat Model of Sporadic Alzheimer’s Disease
Cited by: 3
Author(s): Niloofar Bazazzadegan, Marzieh Dehghan Shasaltaneh, Kioomars Saliminejad, Koorosh Kamali, Mehdi Banan, Reza Nazari, Gholamhossein Riazi, Hamid Reza Khorram Khorshid
Software Mentions: 1
Published: over 8 years ago

10.1186/s12888-017-1543-4

Gray matter morphological anomalies in the cerebellar vermis in first-episode schizophrenia patients with cognitive deficits
Cited by: 14
Author(s): Jingjuan Wang, Liqun Zhou, Chunlei Cui, Zhening Liu, Jie Lu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12888-020-02914-4

Attenuated self-serving bias in people with internet gaming disorder is related to altered neural activity in subcortical-cortical midline structures
Cited by: 4
Author(s): Yifan Wang, Li Zheng, Chenggong Wang, Xin-Heng Guo
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-13-615

Transcriptome analysis of the spalax hypoxia survival response includes suppression of apoptosis and tight control of angiogenesis
Cited by: 29
Author(s): Assaf Malik, Abraham B. Korol, Mathias Weber, Thomas Hankeln, Aaron Avivi, Mark Band
Software Mentions: 1
Published: over 13 years ago

10.1186/s12888-018-1732-9

Age-specific effects of structural and functional connectivity in prefrontal-amygdala circuitry in women with bipolar disorder
Cited by: 13
Author(s): Yanqing Tang, Yinzhu Ma, Xuemei Chen, Xue-sheng Fan, Xiaowei Jiang, Yifang Zhou, Fei Wang, Shengnan Wei
Software Mentions: 1
Published: almost 8 years ago

10.1111/pbi.12694

Transgenic cotton expressing Cry10Aa toxin confers high resistance to the cotton boll weevil
Cited by: 48
Author(s): Thuanne Pires Ribeiro, Fabrício Barbosa Monteiro Arraes, Isabela Tristan Lourenço-Tessutti, Marília Santos Silva, Maria Eugênia Lisei-de-Sá, Wagner Alexandre Lucena, Leonardo Lima Pepino Macedo, Janaina Nascimento Lima, Regina Maria Santos de Amorim, Sinara Artico, Márcio Alves‐Ferreira, Maria Fátima Grossi‐de‐Sá
Software Mentions: 1
Published: over 9 years ago

10.1007/s00425-018-2988-5

Unique chromoplast organisation and carotenoid gene expression in carotenoid-rich carrot callus
Cited by: 22
Author(s): Tomasz Oleszkiewicz, Magdalena Klimek-Chodacka, Anna Milewska‐Hendel, Maciej Zubko, Danuta Stróż, Ewa Kurczyńska, Aleksandra Boba, Jan Szopa, Rafał Barański
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12888-016-0806-9

Altered intrinsic insular activity predicts symptom severity in unmedicated obsessive-compulsive disorder patients: a resting state functional magnetic resonance imaging study
Cited by: 38
Author(s): Yajing Zhu, Qing Fan, Haiyin Zhang, Jianyin Qiu, Lian Tan, Zeping Xiao, Shanbao Tong, Jue Chen, Li Yao
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-018-5237-1

Gene ontology analysis of expanded porcine blastocysts from gilts fed organic or inorganic selenium combined with pyridoxine
Cited by: 7
Author(s): Danyel Bueno Dalto, Stephen Tsoi, Michael K. Dyck, J. J. Matte
Software Mentions: 1
Published: over 7 years ago

10.14814/phy2.12409

Expression of calcium-buffering proteins in rat intrinsic laryngeal muscles
Cited by: 5
Author(s): Renato Ferretti, Maria Júlia Marques, Tejvir S. Khurana, Humberto Santo Neto
Software Mentions: 1
Published: about 11 years ago

10.14814/phy2.13628

Translocation and protein complex co-localization of mTOR is associated with postprandial myofibrillar protein synthesis at rest and after endurance exercise
Cited by: 40
Author(s): Sidney Abou Sawan, Stephan van Vliet, Justin T. Parel, Joseph W. Beals, Michael Mazzulla, Daniel W. D. West, Andrew Philp, Zhong Li, Scott A. Paluska, Nicholas A. Burd, Daniel R. Moore
Software Mentions: 1
Published: over 8 years ago

10.1186/s12888-014-0222-y

Alterations of regional homogeneity in pediatric bipolar depression: a resting-state fMRI study
Cited by: 38
Author(s): Weijia Gao, Qing Jiao, Shengyong Lu, Yuan Zhong, Rongfeng Qi, Dali Lu, Qian Xiao, Fan Yang, Guangming Lu, Linyan Su
Software Mentions: 1
Published: almost 12 years ago

10.1111/pce.12533

Infection of the brown alga <scp>E</scp>ctocarpus siliculosus by the oomycete <scp>E</scp>urychasma dicksonii induces oxidative stress and halogen metabolism
Cited by: 27
Author(s): Martina Strittmatter, Laura J. Grenville‐Briggs, Lisa Breithut, Pieter van West, Claire M. M. Gachon, Frithjof C. Küpper
Software Mentions: 1
Published: about 11 years ago

10.1186/s13007-018-0354-z

Cowpea and abiotic stresses: identification of reference genes for transcriptional profiling by qPCR
Cited by: 34
Author(s): Lidiane Lindinalva Barbosa Amorim, José Ribamar Costa Ferreira‐Neto, João Pacífico Bezerra-Neto, Valesca Pandolfi, Flávia Tadeu de Araújo, Mitalle Karen da Silva Matos, Mariana Santos, Éderson Akio Kido, Ana Maria Benko‐Iseppon
Software Mentions: 1
Published: over 7 years ago

10.1007/s11105-015-0882-x

Transcriptome Profiling of Wild Arachis from Water-Limited Environments Uncovers Drought Tolerance Candidate Genes
Cited by: 55
Author(s): Ana Cristina Miranda Brasileiro, Carolina Vianna Morgante, Ana Cláudia Guerra Araújo, Soraya C. M. Leal‐Bertioli, Amanda K. Silva, Andressa Cunha Quintana Martins, C. C. Vinson, Cristiane dos Santos, Orzenil Bonfim, Roberto Coiti Togawa, Mario Alfredo Passos Saraiva, David J. Bertioli, P. M. Guimarães
Software Mentions: 1
Published: about 11 years ago

10.34133/2019/1671403

Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS
Cited by: 35
Author(s): Cyril Pommier, Célia Michotey, Guillaume Cornut, Pierre Roumet, Éric Duchêne, Raphaël Flores, A. Lebreton, Michaël Alaux, Sophie Durand, Erik Kimmel, Thomas Letellier, G. Merceron, Mathilde Lainé, Claire Guerche, Mikaël Loaec, Delphine Steinbach, Marie‐Angélique Laporte, Elizabeth Arnaud, Hadi Quesneville, Anne-Françoise Adam-Blondon
Software Mentions: 1
Published: over 7 years ago

10.14814/phy2.13291

Paradoxical effect of IKKβ inhibition on the expression of E3 ubiquitin ligases and unloading-induced skeletal muscle atrophy
Cited by: 15
Author(s): Svetlana P. Belova, Борис Шенкман, Tatiana Y. Kostrominova, T. L. Nemirovskaya
Software Mentions: 1
Published: almost 9 years ago

10.14814/phy2.12715

Fish oil supplementation suppresses resistance exercise and feeding-induced increases in anabolic signaling without affecting myofibrillar protein synthesis in young men
Cited by: 68
Author(s): Chris McGlory, Sophie L. Wardle, Lindsay S. Macnaughton, Oliver C. Witard, F. H. Scott, James R. Dick, J. Gordon Bell, Stuart M. Phillips, Stuart D. R. Galloway, D. Lee Hamilton, Kevin D. Tipton
Software Mentions: 1
Published: over 10 years ago

10.1186/s12888-018-1880-y

Effects of stress on behavior and resting-state fMRI in rats and evaluation of Telmisartan therapy in a stress-induced depression model
Cited by: 24
Author(s): Junling Li, Ran Yang, Kai Xia, Tian Wang, Binbin Nie, Kuo Gao, Jianxin Chen, Huihui Zhao, Yubo Li, Wei Wang
Software Mentions: 1
Published: over 7 years ago

10.1007/s00424-015-1727-z

UCP2 modulates single-channel properties of a MCU-dependent Ca2+ inward current in mitochondria
Cited by: 27
Author(s): Alexander I. Bondarenko, Warisara Parichatikanond, Corina T. Madreiter, René Rost, Markus Waldeck-Weiermair, Roland Malli, Wolfgang F. Graier
Software Mentions: 1
Published: almost 11 years ago

10.7717/peerj.5002

Neural correlates of executive functions in patients with obesity
Cited by: 7
Author(s): Ming-Chou Ho, Vincent Chin‐Hung Chen, Seh-Huang Chao, Ching-Tzu Fang, Yichun Liu, Jun‐Cheng Weng
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.1202

APOE genotype and age modifies the correlation between cognitive status and metabolites from hippocampus by a 2D1H-MRS in non-demented elders
Cited by: 4
Author(s): Zhenyu Yin, Wenbo Wu, Renyuan Liu, Xue Liang, Tingting Yu, Xiaoling Chen, Jie Feng, Aibin Guo, Yu Xie, Haiyan Yang, Mengxi Huang, Chuanshuai Tian, Bing Zhang, Yun Xu
Software Mentions: 1
Published: over 10 years ago

10.1186/s12888-018-1955-9

Abnormal resting state activity of left middle occipital gyrus and its functional connectivity in female patients with major depressive disorder
Cited by: 63
Author(s): Changjun Teng, Jing Zhou, Hongyu Ma, Yarong Tan, Xin Wu, Guan Cheng-bin, Hui Qiao, Jijun Li, Yuan Zhong, Chun Wang, Ning Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12888-018-1954-x

Brain regional homogeneity and function connectivity in attenuated psychosis syndrome —based on a resting state fMRI study
Cited by: 7
Author(s): Xiangyun Long, Fei Liu, Nan Huang, Na Liu, Jie Zhang, Jing Chen, Ansi Qi, Xiaofeng Guan, Lirong Zheng
Software Mentions: 1
Published: over 7 years ago

10.3390/antiox9050455

Multidrug Resistance Modulation Activity of Silybin Derivatives and Their Anti-Inflammatory Potential
Cited by: 25
Author(s): Simona Dobiasová, Kateřina Řehořová, Denisa Kučerová, David Biedermann, Kristýna Káňová, Lucie Petrásková, Kamila Koucká, Radka Václavíková, Kateřina Valentová, Tomáš Ruml, Tomáš Macek, Vladimı́r Křen, Jitka Viktorová
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.3147

Assessment of brain functional connectome alternations and correlation with depression and anxiety in major depressive disorders
Cited by: 24
Author(s): Vincent Chin Hung Chen, Chao Shen, Sophie Hsin Yi Liang, Zhen Hui Li, Ming-Kai Hsieh, Yeu Sheng Tyan, Mong Liang Lu, Yena Lee, Roger S. McIntyre, Jun Weng
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.7957

Allelic variant in SLC6A3 rs393795 affects cerebral regional homogeneity and gait dysfunction in patients with Parkinson’s disease
Cited by: 1
Author(s): Lina Wang, Yongsheng Yuan, Jianwei Wang, Yu‐Ting Shen, Yi Zhi, Junyi Li, Min Wang, Kezhong Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1006072

Effect of Ca2+ on the promiscuous target-protein binding of calmodulin
Cited by: 40
Author(s): Annie M. Westerlund, Lucie Delemotte
Software Mentions: 1
Published: about 8 years ago

10.7717/peerj.11759

Alterations in brain structure and function in patients with osteonecrosis of the femoral head: a multimodal MRI study
Cited by: 2
Author(s): Jie Ma, Jiajia Wu, Xu‐Yun Hua, Mou‐Xiong Zheng, Bei‐Bei Huo, Xiang‐Xin Xing, Sheng-Yi Feng, Bo Li, Jian‐Guang Xu
Software Mentions: 1
Published: almost 5 years ago

10.1371/currents.RRN1277

Alterations in the expression of leukemia inhibitory factor following exercise: comparisons between wild-type and mdx muscles
Cited by: 17
Author(s): Liam C. Hunt, Chantal A. Coles, Christopher M Gorman, Elizabeth Tudor, Gayle M. Smythe, Jason D. White
Software Mentions: 1
Published: over 14 years ago

10.7717/peerj.174

The β-carboline alkaloid harmine inhibits telomerase activity of MCF-7 cells by down-regulating hTERT mRNA expression accompanied by an accelerated senescent phenotype
Cited by: 27
Author(s): Lei Zhao, Michael Wink
Software Mentions: 1
Published: over 12 years ago

10.1186/s12888-014-0367-8

Alterations in white matter fractional anisotropy in subsyndromal perimenopausal depression
Cited by: 9
Author(s): Xianglan Wang, Jiong Tao, Lingjiang Li, Zhaohui Zhong, Sha Li, Tianzi Jiang, Jinbei Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/s12888-020-02490-7

Abnormal resting-state functional connectivity of hippocampal subfields in patients with major depressive disorder
Cited by: 25
Author(s): Zi Yu Hao, Yuan Zhong, Zijuan Ma, Hua Xu, Jing Kong, Zhou Wu, Yun Wu, Jian Li, Xin Lü, Ning Zhang, Chun Wang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6697

MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing
Cited by: 6
Author(s): Lian Yih Pong, Sinikka Parkkinen, Amreeta Dhanoa, Han Ming Gan, Chiharu Wickremesinghe, Sharifah Syed Hassan
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.8904

Transient expression and purification of β-caryophyllene synthase in Nicotiana benthamiana to produce β-caryophyllene in vitro
Cited by: 6
Author(s): Sarala Devi Muthusamy, Ramesh R. Vetukuri, Anneli Lundgren, Suresh Ganji, Lu Zhu, Peter E. Brodelius, Selvaraju Kanagarajan
Software Mentions: 1
Published: about 6 years ago

Projects: cran: REST

Science Score: 75/100

Penalties:

Papers Mentioning REST 1,757