cran: REST | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0063081

Early-Stage Psychotherapy Produces Elevated Frontal White Matter Integrity in Adult Major Depressive Disorder
Cited by: 29
Author(s): Tao Wang, Xiaolan Huang, Peiyu Huang, Dan Li, Fajin Lv, Yong Zhang, Linke Zhou, Deyu Yang, Peng Xie
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0065224

The Enterococcus faecium Enterococcal Biofilm Regulator, EbrB, Regulates the esp Operon and Is Implicated in Biofilm Formation and Intestinal Colonization
Cited by: 28
Author(s): Janetta Top, Fernanda L. Paganelli, Xinglin Zhang, Willem van Schaik, Helen L. Leavis, Miranda van Luit-Asbroek, Tom van der Poll, Masja Leendertse, Marc J. M. Bonten, Rob J. L. Willems
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0228680

Comparative transcriptome provides molecular insight into defense-associated mechanisms against spider mite in resistant and susceptible common bean cultivars
Cited by: 13
Author(s): Abdul Hadi Hoseinzadeh, Aboozar Soorni, Marie Shoorooei, Masoud Torkzadeh Mahani, R Maali Amiri, Hossein Allahyari, Reza Mohammadi
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1002624

A Genome-Wide Screen for Genetic Variants That Modify the Recruitment of REST to Its Target Genes
Cited by: 15
Author(s): Rory Johnson, Nadine Richter, Gireesh K. Bogu, Akshay Bhinge, Siaw Wei Teng, Siew Hua Choo, Lise O. Andrieux, Cinzia De Benedictis, Ralf Jauch, Lawrence W. Stanton
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pgen.1003915

FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus nematophila Bacterial Cells
Cited by: 24
Author(s): Grégory Jubelin, Anne Lanois, Dany Séverac, Stéphanie Rialle, C. F. H. Longin, Sophie Gaudriault, Alain Givaudan
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2164-15-854

Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Cited by: 33
Author(s): Sinara Artico, Marcelo Ribeiro-Alves, O. B. Oliveira-Neto, Leonardo Lima Pepino Macedo, Sylvia Rodrigues da Silveira, Maria Fátima Grossi‐de‐Sá, Adriana Pinheiro Martinelli, Márcio Alves‐Ferreira
Software Mentions: 2
Published: about 12 years ago

10.1155/2015/202914

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model
Cited by: 3
Author(s): José Manuel García-Manteiga, Silvia Bonfiglio, Maria Luisa Malosio, Dejan Lazarevic, Elia Stupka, Davide Cittaro, Jacopo Meldolesi
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pgen.1003994

Transcription Factor Occupancy Can Mediate Active Turnover of DNA Methylation at Regulatory Regions
Cited by: 201
Author(s): Angelika Feldmann, Robert Ivánek, Rabih Murr, Dimos Gaidatzis, Lukas Burger, Dirk Schübeler
Software Mentions: 2
Published: almost 13 years ago

10.3390/plants10040758

The EAR Motif in the Arabidopsis MADS Transcription Factor AGAMOUS-Like 15 Is Not Necessary to Promote Somatic Embryogenesis
Cited by: 6
Author(s): Sanjay Joshi, Christian Keller, Sharyn E. Perry
Software Mentions: 2
Published: over 5 years ago

10.1155/2015/824710

Exploring Dynamic Brain Functional Networks Using Continuous “State-Related” Functional MRI
Cited by: 7
Author(s): Xun Li, Yu‐Feng Zang, Han Zhang
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2407-11-45

Effects of EpCAM overexpression on human breast cancer cell lines
Cited by: 64
Author(s): Johanna M. Gostner, Dominic Fong, Oliver A. Wrulich, Florian Lehne, Marion Zitt, Michael Hermann, Sylvia Krobitsch, Agnieszka Martowicz, Guenther Gastl, Gilbert Spizzo
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2164-11-698

Comparative profiling of the transcriptional response to iron restriction in six serotypes of Actinobacillus pleuropneumoniae with different virulence potential
Cited by: 21
Author(s): Kirstine Klitgaard, Carsten Friis, Øystein Angen, Mette Boye
Software Mentions: 2
Published: almost 17 years ago

10.1186/s13567-017-0430-9

Permissiveness of bovine epithelial cells from lung, intestine, placenta and udder for infection with Coxiella burnetii
Cited by: 19
Author(s): Katharina Sobotta, Katharina Bonkowski, Elisabeth M. Liebler-Tenorio, Pierre Germon, Pascal Rainard, Nina Hambruch, Christiane Pfarrer, Ilse D. Jacobsen, Christian Menge
Software Mentions: 2
Published: over 9 years ago

10.1002/vms3.430

Marham‐Mafasel decrease joint inflammation and IL‐1β gene expression in rheumatoid arthritis animal model
Cited by: 3
Author(s): Mohammad Majidi, Fatemeh Heidarnejad, Mohsen Naseri, Shahin Bonakdar, Maryam Salimi, Roya Yaraee
Software Mentions: 2
Published: over 5 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0007743

An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum
Cited by: 216
Author(s): Marianne Nymark, Kristin Collier Valle, Tore Brembu, Kasper Hancke, Per Winge, Kjersti Andresen, Geir Johnsen, Atle M. Bones
Software Mentions: 2
Published: almost 17 years ago

10.1371/journal.pone.0159934

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)
Cited by: 63
Author(s): Mónica B. Betancor, Matthew Sprague, Olga Sayanova, Sarah Usher, Christoforos Metochis, Patrick Campbell, Johnathan A. Napier, Douglas R. Tocher
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-015-1526-0

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
Cited by: 31
Author(s): Alexander Lichius, Frédérique Bidard, Franziska Buchholz, Stéphane Le Crom, Joel Martin, Wendy Schackwitz, Tina Austerlitz, Igor V. Grigoriev, Scott E. Baker, Antoine Margeot, Bernhard Schink, Christian P. Kubicek
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0136820

Reference Gene Selection for qPCR Analysis in Tomato-Bipartite Begomovirus Interaction and Validation in Additional Tomato-Virus Pathosystems
Cited by: 40
Author(s): A. L. M. Lacerda, Leonardo N. Fonseca, Rosana Blawid, L. S. Boiteux, S. G. Ribeiro, Ana Cristina Miranda Brasileiro
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0178460

Assessing the impact of Benzo[a]pyrene on Marine Mussels: Application of a novel targeted low density microarray complementing classical biomarker responses
Cited by: 53
Author(s): Mohamed Bannı, Susanna Sforzini, Volker M. Arlt, Audrey Barranger, Lorna J. Dallas, Caterina Oliveri, Yann Aminot, Beniamina Pacchioni, Caterina Millino, Gerolamo Lanfranchi, James W. Readman, Michael N. Moore, Aldo Viarengo, Awadhesh N. Jha
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0062865

Deep Sequencing Reveals Transcriptome Re-Programming of Taxus × media Cells to the Elicitation with Methyl Jasmonate
Cited by: 67
Author(s): Guiling Sun, Yongqiang Yang, Fuliang Xie, Jianfan Wen, Jianqiang Wu, Iain W. Wilson, Qi Tang, Hongwei Liu, Deyou Qiu
Software Mentions: 2
Published: over 13 years ago

10.3389/fneur.2013.00043

Local Functional Connectivity as a Pre-Surgical Tool for Seizure Focus Identification in Non-Lesion, Focal Epilepsy
Cited by: 40
Author(s): Kurt E. Weaver, Wanpracha Art Chaovalitwongse, Edward J. Novotny, Andrew Poliakov, T. G. Grabowski, Jeffrey G. Ojemann
Software Mentions: 2
Published: almost 14 years ago

10.1002/hbm.25305

Predicting visual working memory with multimodal magnetic resonance imaging
Cited by: 11
Author(s): Xiaomei Yu, Ying Lin, Junji Ma, Jiehui Qian, Zijun Ke, Liangfang Li, Yangyang Yi, Jinbo Zhang, Cam‐CAN, Zhengjia Dai
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms12128581

Effects of Conjugated Linoleic Acid, Fish Oil and Soybean Oil on PPARs (α & γ) mRNA Expression in Broiler Chickens and Their Relation to Body Fat Deposits
Cited by: 28
Author(s): Maryam Royan, Yong Meng Goh, Fauziah Othman, Awis Qurni Sazili, Bahman Navidshad
Software Mentions: 2
Published: almost 15 years ago

10.1002/hbm.24384

Focal application of accelerated iTBS results in global changes in graph measures
Cited by: 6
Author(s): Debby Klooster, Suzanne L. Franklin, René M.H. Besseling, Jaap F.A. Jansen, Karen Caeyenberghs, Romain Duprat, Albert P. Aldenkamp, A.J.A. de Louw, Paul Boon, Chris Baeken
Software Mentions: 2
Published: about 8 years ago

10.3389/fphar.2018.00613

Extending in Silico Protein Target Prediction Models to Include Functional Effects
Cited by: 4
Author(s): Lewis Mervin, Avid M. Afzal, Lars Brive, Ola Engkvist, Andreas Bender
Software Mentions: 2
Published: over 8 years ago

10.1002/hbm.25429

Taking the body off the mind: Decreased functional connectivity between somatomotor and default‐mode networks following Floatation‐REST
Cited by: 12
Author(s): Obada Al Zoubi, Masaya Misaki, Jerzy Bodurka, Rayus Kuplicki, Colleen Wohlrab, William A. Schoenhals, Hazem H. Refai, Sahib S. Khalsa, Murray B. Stein, Martin P. Paulus, Justin S. Feinstein
Software Mentions: 2
Published: over 5 years ago

10.3389/fnhum.2015.00074

Differential cerebral response to somatosensory stimulation of an acupuncture point vs. two non-acupuncture points measured with EEG and fMRI
Cited by: 27
Author(s): Till Nierhaus, Daniel Pach, Weixin Huang, Xiangyu Long, Vitaly Napadow, Stephanie Roll, Fanrong Liang, Burkhard Pleger, Arno Villringer, Claudia M. Witt
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0089463

Effect of Age on Complexity and Causality of the Cardiovascular Control: Comparison between Model-Based and Model-Free Approaches
Cited by: 80
Author(s): Alberto Porta, Luca Faes, Vlasta Bari, Andrea Marchi, Tito Bassani, Giandomenico Nollo, Natália Maria Perseguini, Juliana Cristina Milan, Vinícius Minatel, Audrey Borghi‐Silva, Anielle Cristhine de Medeiros Takahashi, Aparecida Maria Catai
Software Mentions: 2
Published: over 12 years ago

10.3389/fnhum.2018.00322

Mapping the Spatiotemporal Evolution of Emotional Processing: An MEG Study Across Arousal and Valence Dimensions
Cited by: 11
Author(s): Charis Styliadis, Andreas A. Ioannides, Panagiotis D. Bamidis, Christos Papadelis
Software Mentions: 2
Published: about 8 years ago

10.1038/srep37617

Structural and Functional Connectivity of Default Mode Network underlying the Cognitive Impairment in Late-onset Depression
Cited by: 32
Author(s): Yingying Yin, Xiaofu He, Mingze Xu, Zhenghua Hou, Xiaopeng Song, Yuxiu Sui, Zhi Li, Wenhao Jiang, Yingying Yue, Yuqun Zhang, Yijun Liu, Yonggui Yuan
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms20040806

Unravelling the Complexity of Plant Defense Induced by a Simultaneous and Sequential Mite and Aphid Infestation
Cited by: 6
Author(s): Małgorzata Kiełkiewicz, Anna Barczak-Brzyżek, Barbara Karpińska, Marcin Filipecki
Software Mentions: 2
Published: over 7 years ago

10.1038/srep39049

Interactomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation
Cited by: 17
Author(s): Namgyu Lee, Sung Jin Park, Ghazal Haddad, Dae-Kyum Kim, Seon‐Min Park, Sang Ki Park, Kwan Yong Choi
Software Mentions: 2
Published: almost 10 years ago

10.3389/fnhum.2014.00409

Network complexity as a measure of information processing across resting-state networks: evidence from the Human Connectome Project
Cited by: 101
Author(s): Ian M. McDonough, Kaoru Nashiro
Software Mentions: 2
Published: over 12 years ago

10.1038/srep42278

Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents
Cited by: 20
Author(s): Irene Olivé, João Silva, Chiara Lauritano, Monya M. Costa, Miriam Ruocco, Gabriele Procaccini, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms20184389

Effect of Tff3 Deficiency and ER Stress in the Liver
Cited by: 5
Author(s): Kate Šešelja, Iva Bazina, Jessica Welss, Martin Schicht, Friedrich Paulsen, Nikola Bijelić, Edi Rođak, Anita Horvatić, Andrea Gelemanović, Martina Mihalj, Mirela Baus Lončar
Software Mentions: 2
Published: about 7 years ago

10.1038/srep42890

Depth-specific fluctuations of gene expression and protein abundance modulate the photophysiology in the seagrass Posidonia oceanica
Cited by: 47
Author(s): Gabriele Procaccini, Miriam Ruocco, Lázaro Marín-Guirao, Emanuela Dattolo, Christophe Brunet, Daniela D’Esposito, Chiara Lauritano, Silvia Mazzuca, Ilia Anna Serra, Letizia Bernardo, Amalia Piro, Sven Beer, Mats Björk, Martin Gullström, Pimchanok Buapet, Lina M. Rasmusson, Paulo Felisberto, Sylvie Gobert, John W. Runcie, João Silva, Irene Olivé, Monya M. Costa, Isabel Barrote, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0121169

T-Cell Activation and Early Gene Response in Dogs
Cited by: 10
Author(s): Sally Mortlock, Jerry Wei, Peter Williamson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0144937

From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity
Cited by: 28
Author(s): Geraldine Mulley, Michael L. Beeton, Paul Wilkinson, Isabella Vlisidou, Nina Ockendon-Powell, Alexia Hapeshi, Nicholas J. Tobias, Friederike I. Nollmann, Helge B. Bode, Jean M. H. van den Elsen, Richard H. ffrench-Constant, Nicholas R. Waterfield
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpls.2017.02218

Nictaba Homologs from Arabidopsis thaliana Are Involved in Plant Stress Responses
Cited by: 13
Author(s): Lore Eggermont, Karolina Stefanowicz, Els J. M. Van Damme
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms20246139

Insights into Barley Root Transcriptome under Mild Drought Stress with an Emphasis on Gene Expression Regulatory Mechanisms
Cited by: 22
Author(s): Agnieszka Janiak, Mirosław Kwaśniewski, Marta Sowa, Anetta Kuczyńska, Krzysztof Mikołajczak, Piotr Ogrodowicz, Iwona Szarejko
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21030719

Combined Effects of Diatom-Derived Oxylipins on the Sea Urchin Paracentrotus lividus
Cited by: 8
Author(s): Roberta Esposito, Nadia Ruocco, Luisa Albarano, Adrianna Ianora, Loredana Manfra, Giovanni Libralato, Maria Costantini
Software Mentions: 2
Published: almost 7 years ago

10.1111/joa.12977

Altered haemodynamics causes aberrations in the epicardium
Cited by: 4
Author(s): Chrysostomos Perdios, Matthew Parnall, Kar Lai Pang, Siobhan Loughna
Software Mentions: 2
Published: over 7 years ago

10.3389/fnhum.2020.574148

Brain Responses to Food Odors Associated With BMI Change at 2-Year Follow-Up
Cited by: 6
Author(s): Pengfei Han, Hong Chen, Thomas Hummel
Software Mentions: 2
Published: about 6 years ago

10.3389/fnhum.2015.00386

GRETNA: a graph theoretical network analysis toolbox for imaging connectomics
Cited by: 544
Author(s): Jinhui Wang, Xindi Wang, Mingrui Xia, Xuhong Liao, Alan C. Evans, Yong He
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms21239124

Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane
Cited by: 23
Author(s): Augusto Lima Diniz, Danielle Izilda Rodrigues da Silva, Carolina Gimiliani Lembke, Maximiller Dal-Bianco, Felipe Ten Caten, Forrest Li, Romel Duarte Vilela, Marcelo Menossi, Doreen Ware, Laurício Endres, Gláucia Mendes Souza
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22010026

Disclosing the Interaction of Gold Nanoparticles with Aβ(1–40) Monomers through Replica Exchange Molecular Dynamics Simulations
Cited by: 15
Author(s): Francesco Tavanti, Alfonso Pedone, Maria Cristina Menziani
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-07236-2

Integration of miRNA and mRNA expression profiles reveals microRNA-regulated networks during muscle wasting in cardiac cachexia
Cited by: 37
Author(s): Leonardo Nazário de Moraes, Geysson Javier Fernández, Ivan J. Vechetti, Paula Paccielli Freire, Rodrigo Wagner Alves de Souza, Rolando A R Villacis, Sílvia Regina Rogatto, Patrícia P. Reis, Maeli Dal-Pai-Silva, Robson Francisco Carvalho
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms22084263

Targeting of Deregulated Wnt/β-Catenin Signaling by PRI-724 and LGK974 Inhibitors in Germ Cell Tumor Cell Lines
Cited by: 9
Author(s): Silvia Schmidtova, Katarína Kalavska, Veronika Lišková, Jana Plavá, Svetlana Miklikova, Lucia Kučerová, Miroslava Matúšková, Lucia Rojikova, Zuzana Čierna, Adriana L. Rogozea, Heiko König, Costantine Albany, Michal Mego, Michal Chovanec
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-12092-1

De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential
Cited by: 51
Author(s): Chiara Lauritano, Danièle De Luca, Alberto Ferrarini, C. Avanzato, Andrea Minio, Francesco Esposito, Adrianna Ianora
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-14075-8

Nutrient Loading Fosters Seagrass Productivity Under Ocean Acidification
Cited by: 27
Author(s): Chiara Ravaglioli, Chiara Lauritano, María Cristina Buia, Elena Balestri, Antonella Capocchi, Debora Fontanini, G. Pardi, Laura Tamburello, Gabriele Procaccini, Fabio Bulleri
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2020.585202

Ocean Acidification and Warming Lead to Increased Growth and Altered Chloroplast Morphology in the Thermo-Tolerant Alga Symbiochlorum hainanensis
Cited by: 10
Author(s): Sanqiang Gong, Xuejie Jin, Yilin Xiao, Zhiyong Li
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22169077

Cappable-Seq Reveals Specific Patterns of Metabolism and Virulence for Salmonella Typhimurium Intracellular Survival within Acanthamoeba castellanii
Cited by: 1
Author(s): Alexander S. Balkin, А. О. Плотников, Natalia Gogoleva, Alexander A. Kamnev, Kirill N. Demchenko, С. В. Черкасов
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms221810054

Antistress Action of Melanocortin Derivatives Associated with Correction of Gene Expression Patterns in the Hippocampus of Male Rats Following Acute Stress
Cited by: 8
Author(s): Ivan B. Filippenkov, Vasily V. Stavchansky, N. Yu. Glazova, Е. А. Себенцова, Julia A. Remizova, Liya V Valieva, N. G. Levitskaya, N. F. Myasoedov, Svetlana A. Limborska, Lyudmila V. Dergunova
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-24023-9

Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis
Cited by: 25
Author(s): Nadia Ruocco, Susan Costantini, Valerio Zupo, Chiara Lauritano, Davide Caramiello, Adrianna Ianora, Alfredo Budillon, Giovanna Romano, Genoveffa Nuzzo, Giuliana d’Ippolito, Angelo Fontana, Maria Costantini
Software Mentions: 2
Published: over 8 years ago

10.3389/fnagi.2014.00075

Deciphering the Molecular Profile of Plaques, Memory Decline and Neuron Loss in Two Mouse Models for Alzheimerâ€™s Disease by Deep Sequencing
Cited by: 71
Author(s): Yvonne Bouter, Tim Kacprowski, Robert Weißmann, Katharina Dietrich, Henning Borgers, Andreas Brauß, Christian Sperling, Oliver Wirths, Mario Albrecht, Lars Riff Jensen, Andreas W. Kuß, Thomas A. Bayer
Software Mentions: 2
Published: over 12 years ago

10.1186/1758-2946-2-5

Towards interoperable and reproducible QSAR analyses: Exchange of datasets
Cited by: 39
Author(s): Ola Spjuth, Egon Willighagen, Rajarshi Guha, Martin Eklund, Jarl E. S. Wikberg
Software Mentions: 2
Published: over 16 years ago

10.1088/1741-2560/12/5/056012

Estimating a neutral reference for electroencephalographic recordings: the importance of using a high-density montage and a realistic head model
Cited by: 83
Author(s): Quanying Liu, Joshua H. Balsters, Marc Baechinger, Onno van der Groen, Nicole Wenderoth, Dante Mantini
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2016.00995

Transcription of TIR1-Controlled Genes Can be Regulated within 10 Min by an Auxin-Induced Process. Can TIR1 be the Receptor?
Cited by: 1
Author(s): Corinna Labusch, Yunus Effendi, Martin Fulda, Günther F. E. Scherer
Software Mentions: 2
Published: over 10 years ago

10.1523/JNEUROSCI.2578-20.2021

Interoception Primes Emotional Processing: Multimodal Evidence from Neurodegeneration
Cited by: 47
Author(s): Paula Salamone, Agustina Legaz, Lucas Sedeño, Sebastián Moguilner, Matias E Fraile-Vazquez, Cecilia González Campo, Sol Fittipaldi, Adrián Yoris, Magdalena Miranda, Agustina Birba, Agostina Galiani, Sofía Abrevaya, A.B. Neely, Miguel Martorell, Florencia Alifano, Roque Villagra, Florencia Anunziata, Maira Okada de Oliveira, Ricardo Marcos Pautassi, Andrea Slachevsky, Cecília Serrano, Adolfo M. García, Agustín Ibáñez
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0098346

Structural and Functional Brain Alterations in End Stage Renal Disease Patients on Routine Hemodialysis: A Voxel-Based Morphometry and Resting State Functional Connectivity Study
Cited by: 51
Author(s): Yingwei Qiu, Xiaofei Lv, Huanhuan Su, Guihua Jiang, Cheng Li, Tian Jian-guo
Software Mentions: 2
Published: over 12 years ago

10.1128/mSystems.00124-16

Direct Heme Uptake by Phytoplankton-Associated Roseobacter Bacteria
Cited by: 23
Author(s): Shane L. Hogle, Bianca Brahamsha, Katherine A. Barbeau
Software Mentions: 2
Published: over 9 years ago

10.1038/ismej.2013.223

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
Cited by: 147
Author(s): Clarissa Schwab, David Berry, Isabella Rauch, Ina Maria Rennisch, Julia Ramesmayer, Eva Hainzl, Susanne Heider, Thomas Decker, Lukas Kenner, Mathias Müller, Birgit Strobl, Michael Wagner, Christa Schleper, Alexander Loy, Tim Urich
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0243869

Evaluation of the impact of surgical aortic valve replacement on short-term cardiovascular and cerebrovascular controls through spontaneous variability analysis
Cited by: 6
Author(s): Alberto Porta, Angela Fantinato, Vlasta Bari, Francesca Gelpi, Beatrice Cairo, Beatrice De Maria, Enrico Giuseppe Bertoldo, Valentina Fiolo, Edward Callus, Carlo De Vincentiis, Marianna Volpe, Raffaella Molfetta, Marco Ranucci
Software Mentions: 2
Published: almost 6 years ago

10.1093/jxb/erv285

TheIDA/IDA-LIKEandPIP/PIP-LIKEgene families inArabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide
Cited by: 64
Author(s): Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert P. Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0215729

Reference genes selection for Calotropis procera under different salt stress conditions
Cited by: 6
Author(s): Maria Reis Valois Coêlho, Rebeca Rivas, José Ribamar Costa Ferreira‐Neto, Valesca Pandolfi, João Pacífico Bezerra-Neto, Ana Maria Benko‐Iseppon, Mariana Santos
Software Mentions: 2
Published: over 7 years ago

10.1093/jxb/erw039

Prioritizing quantitative trait loci for root system architecture in tetraploid wheat
Cited by: 151
Author(s): Marco Maccaferri, Walid M. El-Feki, Ghasemali Nazemi, Silvio Salvi, Maria Angela Canè, Maria Chiara Colalongo, Sandra Stefanelli, Roberto Tuberosa
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/erv516

Kresoxim-methyl primesMedicago truncatulaplants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment
Cited by: 28
Author(s): Panagiota Filippou, Chrystalla Antoniou, Toshihiro Obata, Katrien Van Der Kelen, Vaggelis Harokopos, Loukas Kanetis, Vassilis Aidinis, Frank Van Breusegem, Alisdair R. Fernie, Vasileios Fotopoulos
Software Mentions: 2
Published: almost 11 years ago

10.3390/jof7060414

Osmolyte Signatures for the Protection of Aspergillus sydowii Cells under Halophilic Conditions and Osmotic Shock
Cited by: 6
Author(s): Eya Caridad Rodríguez-Pupo, Yordanis Pérez-Llano, José Raunel Tinoco-Valencia, Norma Silvia Sánchez, Francisco Padilla-Garfias, Martha Calahorra, Nilda del C. Sánchez, Ayixón Sánchez-Reyes, María Del Rocío Rodríguez-Hernández, Antonio Peña, Óscar José Mesa Sánchez, Jesús Aguirre, Ramón Alberto Batista-García, Jorge Luis Folch-Mallol, María del Rayo Sánchez-Carbente
Software Mentions: 2
Published: over 5 years ago

10.1093/jxb/erx168

The IDA-LIKE peptides IDL6 and IDL7 are negative modulators of stress responses in Arabidopsis thaliana
Cited by: 28
Author(s): Ane Kjersti Vie, Javad Najafi, Per Winge, Ester Cattan, Michael Wrzaczek, Jaakko Kangasjärvi, Gad Miller, Tore Brembu, Atle M. Bones
Software Mentions: 2
Published: over 9 years ago

10.3389/fbioe.2019.00106

Cyberbiosecurity Challenges of Pathogen Genome Databases
Cited by: 15
Author(s): Boris A. Vinatzer, Lenwood S. Heath, Hussain M. J. Almohri, Michael J. Stulberg, Christopher J. Lowe, Song Li
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0124681

Frequency Dependent Topological Patterns of Resting-State Brain Networks
Cited by: 32
Author(s): Long Qian, Yi Zhang, Li Zheng, Yuqing Shang, Jia‐Hong Gao, Yijun Liu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0175415

An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry
Cited by: 64
Author(s): Mónica B. Betancor, Keshuai Li, Matthew Sprague, Tora Bardal, Olga Sayanova, Sarah Usher, Lihua Han, Kjell Måsøval, Ole Torrissen, Johnathan A. Napier, Douglas R. Tocher, Rolf Erik Olsen
Software Mentions: 2
Published: over 9 years ago

10.1155/2019/9520642

DREB Genes from Common Bean (Phaseolus vulgaris L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: over 7 years ago

10.1002/gps.4342

Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences
Cited by: 40
Author(s): Luis R. Peraza, Sean J. Colloby, Michael Firbank, G. Shirmin Greasy, Ian G. McKeith, Marcus Kaiser, John T. O′Brien, John‐Paul Taylor
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2013.00038

Establishing Research Strategies, Methodologies and Technologies to Link Genomics and Proteomics to Seagrass Productivity, Community Metabolism, and Ecosystem Carbon Fluxes
Cited by: 33
Author(s): Silvia Mazzuca, Mats Björk, Sven Beer, Paulo Felisberto, Sylvie Gobert, Gabriele Procaccini, John W. Runcie, João Silva, Alberto Borges, Christophe Brunet, Pimchanok Buapet, Willy Champenois, Mm Costa, Daniela D’Esposito, Martin Gullström, Pierre Lejeune, Gilles Lepoint, Irene Olivé, Lina M. Rasmusson, Jonathan Richir, Michelina Ruocco, IA Serra, A. Spadafora, Rui Santos
Software Mentions: 2
Published: almost 14 years ago

10.3389/fcell.2017.00012

The Importance of REST for Development and Function of Beta Cells
Cited by: 21
Author(s): David Martín, Anne Grapin-Botton
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1009481

TcpC inhibits toll-like receptor signaling pathway by serving as an E3 ubiquitin ligase that promotes degradation of myeloid differentiation factor 88
Cited by: 6
Author(s): Jiaqi Fang, Qian Ou, Jun Pan, Dayong Zhang, Miao-Qi Qiu, Yue-Qi Li, Xiaohui Wang, Xue-Yu Yang, Zhe Chi, Wei Gao, Jing Guo, Thomas Miethke, Jianping Pan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0050064

Differential Deactivation during Mentalizing and Classification of Autism Based on Default Mode Network Connectivity
Cited by: 92
Author(s): Donna L. Murdaugh, Svetlana V. Shinkareva, Hrishikesh R. Deshpande, Jing Wang, Mark R. Pennick, Rajesh K. Kana
Software Mentions: 2
Published: almost 14 years ago

10.3389/fnhum.2018.00279

Effects of the 2-Repeat Allele of the DRD4 Gene on Neural Networks Associated With the Prefrontal Cortex in Children With ADHD
Cited by: 9
Author(s): Andan Qian, Jiejie Tao, Xin Wang, Huiru Liu, Ling-Xiao Ji, Chuang Yang, Qiong Ye, Chengchun Chen, Jiance Li, Jingliang Cheng, Meihao Wang, Ke Zhao
Software Mentions: 2
Published: over 8 years ago

10.1016/j.pneurobio.2020.101790

MeCP2 mediates transgenerational transmission of chronic pain
Cited by: 10
Author(s): Wenjuan Tao, Changmao Chen, Yuping Wang, Wenjie Zhou, Yan Jin, Yu Mao, Haitao Wang, Likui Wang, Wen Xie, Xulai Zhang, Jie Li, Juan Li, Xiang-Yao Li, Zhen Quan Tang, Chenghua Zhou, Zhizhong Z. Pan, Zhi Zhang
Software Mentions: 2
Published: over 6 years ago

10.1186/1476-072X-10-62

Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain
Cited by: 20
Author(s): Pau Dominkovics, Carlos Granell, Antoni Pérez-Navarro, Martí Casals, Àngels Orcau, Joan A. Caylà
Software Mentions: 2
Published: almost 15 years ago

10.1002/pro.3978

The <scp>BioGRID</scp> database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
Cited by: 612
Author(s): Rose Oughtred, Jennifer Rust, Christie S. Chang, Bobby-Joe Breitkreutz, Chris Stark, Andrew Willems, Lorrie Boucher, Genie Leung, Nadine K. Kolas, Frederick Zhang, Sonam Dolma, Jasmin Coulombe-Huntington, Andrew Chatr‐aryamontri, Kara Dolinski, Mike Tyers
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2018.01435

Functional Analysis of Four Terpene Synthases in Rose-Scented Pelargonium Cultivars (Pelargonium × hybridum) and Evolution of Scent in the Pelargonium Genus
Cited by: 15
Author(s): Bernard Blerot, Laure Martinelli, Cécile Prunier, Denis Saint-Marcoux, Sylvain Legrand, Aurélie Bony, Loïc Sarrabère, Florence Gros, Nicolas Boyer, Jean‐Claude Caissard, Sylvie Baudino, Frédéric Jullien
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0120345

Default Mode Network, Motor Network, Dorsal and Ventral Basal Ganglia Networks in the Rat Brain: Comparison to Human Networks Using Resting State-fMRI
Cited by: 53
Author(s): Adam Sierakowiak, Cyril Monnot, Sahar Nikkhou Aski, Martin Uppman, Tie‐Qiang Li, Peter Damberg, Stefan Brené
Software Mentions: 2
Published: over 11 years ago

10.1186/1465-9921-14-85

Carcinoembryonic antigen (CEA)-related cell adhesion molecules are co-expressed in the human lung and their expression can be modulated in bronchial epithelial cells by non-typable Haemophilus influenzae, Moraxella catarrhalis, TLR3, and type I and II interferons
Cited by: 59
Author(s): Esther Klaile, Tilman E. Klassert, Inka Scheffrahn, Müller Mm, A Heinrich, Kerstin A. Heyl, Hendrik Dienemann, Christian Grünewald, Robert Bals, Bernhard B. Singer, Hortense Slevogt
Software Mentions: 2
Published: about 13 years ago

10.1093/ijnp/pyw062

Down-Regulation of Hippocampal Genes Regulating Dopaminergic, GABAergic, and Glutamatergic Function Following Combined Neonatal Phencyclidine and Post-Weaning Social Isolation of Rats as a Neurodevelopmental Model for Schizophrenia
Cited by: 24
Author(s): Philip Gaskin, Maria Toledo-Rodriguez, Stephen P.H. Alexander, Kevin C. F. Fone
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0115867

Identification of Genes Associated with Reproduction in the Mud Crab (Scylla olivacea) and Their Differential Expression following Serotonin Stimulation
Cited by: 19
Author(s): Napamanee Kornthong, Scott F. Cummins, Charoonroj Chotwiwatthanakun, Kanjana Khornchatri, Attakorn Engsusophon, Peter Hanna, Prasert Sobhon
Software Mentions: 2
Published: almost 12 years ago

10.1534/g3.116.030791

Mutations inDnaaf1andLrrc48Cause Hydrocephalus, Laterality Defects, and Sinusitis in Mice
Cited by: 34
Author(s): Seungshin Ha, Anna Lindsay, Andrew E. Timms, David R. Beier
Software Mentions: 2
Published: about 10 years ago

10.1016/j.exer.2019.03.024

Mutation in the mouse histone gene Hist2h3c1 leads to degeneration of the lens vesicle and severe microphthalmia
Cited by: 4
Author(s): Sharmilee Vetrivel, Natascia Tiso, Andrea Kügler, Martin Irmler, Marion Horsch, Johannes Beckers, Daniela Hladik, Florian Giesert, Valérie Gailus‐Durner, Helmut Fuchs, Sibylle Sabrautzki, Martin Hrabé de Angelis, Jochen Graw
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0159563

Glutathione S-Transferase Regulation in Calanus finmarchicus Feeding on the Toxic Dinoflagellate Alexandrium fundyense
Cited by: 9
Author(s): Vittoria Roncalli, Michelle J. Jungbluth, Petra H. Lenz
Software Mentions: 2
Published: over 10 years ago

10.3390/genes9030151

Analysis of Gene Regulatory Networks of Maize in Response to Nitrogen
Cited by: 25
Author(s): Lu Jiang, Graham Ball, Charlie Hodgman, A. Coules, Han Zhao, Chungui Lu
Software Mentions: 2
Published: over 8 years ago

10.3390/genes11020117

Inguinal Ring RNA Sequencing Reveals Downregulation of Muscular Genes Related to Scrotal Hernia in Pigs
Cited by: 6
Author(s): Gabriela Romano, A. M. G. Ibelli, William Raphael Lorenzetti, Tomás Weber, J. de O. Peixoto, Maurício Egídio Cantão, M. A. Z. Morés, N. Morés, Victor Breno Pedrosa, Luiz Lehmann Coutinho, Mônica Corrêa Ledur
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes11060681

Novel Insights into the Protective Properties of ACTH(4-7)PGP (Semax) Peptide at the Transcriptome Level Following Cerebral Ischaemia–Reperfusion in Rats
Cited by: 15
Author(s): Ivan B. Filippenkov, Vasily V. Stavchansky, Alina E. Denisova, Vadim V. Yuzhakov, L.E. Sevankaeva, Olga Yu. Sudarkina, В. Г. Дмитриева, Leonid V. Gubsky, N. F. Myasoedov, Svetlana A. Limborska, Lyudmila V. Dergunova
Software Mentions: 2
Published: over 6 years ago

10.3389/fnhum.2019.00365

Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming
Cited by: 9
Author(s): Caroline Garcia Forlim, Lukas Bittner, Fariba Mostajeran, Frank Steinicke, Jürgen Gallinat, Simone Kühn
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0173289

Comparing resting state fMRI de-noising approaches using multi- and single-echo acquisitions
Cited by: 68
Author(s): Ottavia Dipasquale, Arjun Sethi, Maria Marcella Laganà, Francesca Baglio, Giuseppe Baselli, Prantik Kundu, Neil A. Harrison, Mara Cercignani
Software Mentions: 2
Published: over 9 years ago

10.3389/fnhum.2020.585664

Increased Amygdala-Paracentral Lobule/Precuneus Functional Connectivity Associated With Patients With Mood Disorder and Suicidal Behavior
Cited by: 14
Author(s): Ran Zhang, Luheng Zhang, Shengnan Wei, Pengshuo Wang, Xiaowei Jiang, Yanqing Tang, Fei Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/gb-2009-10-7-r81

Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine
Cited by: 71
Author(s): Katharine J Webb, William Norton, Dietrich Trümbach, Annemarie H. Meijer, Jovica Ninkovic, Stefanie Topp, Daniel W. Heck, Carsten Marr, Wolfgang Wurst, Fabian J. Theis, Herman P. Spaink, Laure Bally‐Cuif
Software Mentions: 2
Published: almost 18 years ago

10.1186/s13059-014-0532-x

Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL-mediated apoptosis
Cited by: 6
Author(s): James W. Wynne, Brian J. Shiell, Glenn A. Marsh, Victoria Boyd, Jennifer Harper, Kate J Heesom, Paul Monaghan, Peng Zhou, Jean Payne, Reuben Klein, Shawn Todd, Lawrence Mok, Diane Green, John Bingham, Mary Tachedjian, Michelle L. Baker, David A. Matthews, Lin‐Fa Wang
Software Mentions: 2
Published: almost 12 years ago

Projects: cran: REST

Science Score: 75/100

Penalties:

Papers Mentioning REST 1,757