cran: REST | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0212089

In vitro evaluation of the protective effects of plant extracts against amyloid-beta peptide-induced toxicity in human neuroblastoma SH-SY5Y cells
Cited by: 23
Author(s): Ana Luiza Sereia, Marcelo Tempesta de Oliveira, Adrivânio Baranoski, Leila Larisa Medeiros Marques, Fabianne Martins Ribeiro, Raquel Garcia Isolani, Daniela Cristina de Medeiros Araújo, Danielly Chierrito, Danielle Lazarin-Bidóia, Acácio Antônio Ferreira Zielinski, Cláudio Roberto Novello, Celso Vataru Nakamura, Mário Mantovani, João Carlos Palazzo de Mello
Software Mentions: 2
Published: over 7 years ago

10.1007/s12551-016-0234-6

Analytical methods for structural ensembles and dynamics of intrinsically disordered proteins
Cited by: 15
Author(s): Marieke Schor, Antonia S. J. S. Mey, Cait E. MacPhee
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0120345

Default Mode Network, Motor Network, Dorsal and Ventral Basal Ganglia Networks in the Rat Brain: Comparison to Human Networks Using Resting State-fMRI
Cited by: 53
Author(s): Adam Sierakowiak, Cyril Monnot, Sahar Nikkhou Aski, Martin Uppman, Tie‐Qiang Li, Peter Damberg, Stefan Brené
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0076234

NR4A2 Is Regulated by Gastrin and Influences Cellular Responses of Gastric Adenocarcinoma Cells
Cited by: 13
Author(s): Kristine Misund, Linn-Karina M. Selvik, Shalini Rao, Kristin G. Nørsett, Ingrid Bakke, Arne K. Sandvik, Astrid Lægreid, Torunn Bruland, Wenche S. Prestvik, Liv Thommesen
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0115867

Identification of Genes Associated with Reproduction in the Mud Crab (Scylla olivacea) and Their Differential Expression following Serotonin Stimulation
Cited by: 19
Author(s): Napamanee Kornthong, Scott F. Cummins, Charoonroj Chotwiwatthanakun, Kanjana Khornchatri, Attakorn Engsusophon, Peter Hanna, Prasert Sobhon
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0098346

Structural and Functional Brain Alterations in End Stage Renal Disease Patients on Routine Hemodialysis: A Voxel-Based Morphometry and Resting State Functional Connectivity Study
Cited by: 51
Author(s): Yingwei Qiu, Xiaofei Lv, Huanhuan Su, Guihua Jiang, Cheng Li, Tian Jian-guo
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0089463

Effect of Age on Complexity and Causality of the Cardiovascular Control: Comparison between Model-Based and Model-Free Approaches
Cited by: 80
Author(s): Alberto Porta, Luca Faes, Vlasta Bari, Andrea Marchi, Tito Bassani, Giandomenico Nollo, Natália Maria Perseguini, Juliana Cristina Milan, Vinícius Minatel, Audrey Borghi‐Silva, Anielle Cristhine de Medeiros Takahashi, Aparecida Maria Catai
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0175415

An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry
Cited by: 64
Author(s): Mónica B. Betancor, Keshuai Li, Matthew Sprague, Tora Bardal, Olga Sayanova, Sarah Usher, Lihua Han, Kjell Måsøval, Ole Torrissen, Johnathan A. Napier, Douglas R. Tocher, Rolf Erik Olsen
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0124681

Frequency Dependent Topological Patterns of Resting-State Brain Networks
Cited by: 32
Author(s): Long Qian, Yi Zhang, Li Zheng, Yuqing Shang, Jia‐Hong Gao, Yijun Liu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0215729

Reference genes selection for Calotropis procera under different salt stress conditions
Cited by: 6
Author(s): Maria Reis Valois Coêlho, Rebeca Rivas, José Ribamar Costa Ferreira‐Neto, Valesca Pandolfi, João Pacífico Bezerra-Neto, Ana Maria Benko‐Iseppon, Mariana Santos
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0121169

T-Cell Activation and Early Gene Response in Dogs
Cited by: 10
Author(s): Sally Mortlock, Jerry Wei, Peter Williamson
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0148451

Identification and Validation of Reference Genes and Their Impact on Normalized Gene Expression Studies across Cultivated and Wild Cicer Species
Cited by: 37
Author(s): D. Srinivas Reddy, Pooja Bhatnagar‐Mathur, Palakolanu Sudhakar Reddy, Katamreddy Sri Cindhuri, Adusumalli Sivaji Ganesh, Kiran K. Sharma
Software Mentions: 2
Published: over 10 years ago

10.3390/biom10050743

Targeting Intrinsically Disordered Proteins through Dynamic Interactions
Cited by: 30
Author(s): Jianlin Chen, Xiaorong Liu, Jianhan Chen
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/5565824

Decoding of Motor Coordination Imagery Involving the Lower Limbs by the EEG-Based Brain Network
Cited by: 2
Author(s): Yunfa Fu, Zhouzhou Zhou, Anmin Gong, Qian Qian, Lei Su, Zhixin Lei
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-13-448

Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar)
Cited by: 92
Author(s): Sofía Morais, Tomé S. Silva, Odete Cordeiro, Pedro M. Rodrigues, D. R. Guy, James E. Bron, John B. Taggart, J. Gordon Bell, Douglas R. Tocher
Software Mentions: 2
Published: over 14 years ago

10.1155/2016/1035945

Modeling Gene Regulation in Liver Hepatocellular Carcinoma with Random Forests
Cited by: 7
Author(s): Hilal Kazan
Software Mentions: 2
Published: over 10 years ago

10.1155/2015/719076

Insulin Resistance-Associated Interhemispheric Functional Connectivity Alterations in T2DM: A Resting-State fMRI Study
Cited by: 27
Author(s): Wenqing Xia, Shaohua Wang, Andrea M. Spaeth, Hengyi Rao, Pin Wang, Yue Yang, Rong Huang, Rongrong Cai, Hao Sun
Software Mentions: 2
Published: over 11 years ago

10.1007/s00253-017-8161-4

Trichoderma reesei xylanase 5 is defective in the reference strain QM6a but functional alleles are present in other wild-type strains
Cited by: 8
Author(s): Jonas Ramoni, Martina Marchetti‐Deschmann, Verena Seidl‐Seiboth, Bernhard Schink
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0182407

Protective effects on the retina after ranibizumab treatment in an ischemia model
Cited by: 23
Author(s): Stephanie C. Joachim, Marina Renner, Jacqueline Reinhard, Carsten Theiß, Caroline May, Stephanie Lohmann, Sabrina Reinehr, Gesa Stute, Andréas Faissner, Katrin Marcus, H. Burkhard Dick
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-11-455

Gene expression profiling in the lungs of pigs with different susceptibilities to Glässer's disease
Cited by: 23
Author(s): Jamie M. Wilkinson, Carole A. Sargent, L. Galina-Pantoja, Alexander W. Tucker
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0243869

Evaluation of the impact of surgical aortic valve replacement on short-term cardiovascular and cerebrovascular controls through spontaneous variability analysis
Cited by: 6
Author(s): Alberto Porta, Angela Fantinato, Vlasta Bari, Francesca Gelpi, Beatrice Cairo, Beatrice De Maria, Enrico Giuseppe Bertoldo, Valentina Fiolo, Edward Callus, Carlo De Vincentiis, Marianna Volpe, Raffaella Molfetta, Marco Ranucci
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0173289

Comparing resting state fMRI de-noising approaches using multi- and single-echo acquisitions
Cited by: 68
Author(s): Ottavia Dipasquale, Arjun Sethi, Maria Marcella Laganà, Francesca Baglio, Giuseppe Baselli, Prantik Kundu, Neil A. Harrison, Mara Cercignani
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0085364

Knocking-Down Meloidogyne incognita Proteases by Plant-Delivered dsRNA Has Negative Pleiotropic Effect on Nematode Vigor
Cited by: 50
Author(s): José Dijair Antonino de Souza Júnior, Roberta Ramos Coelho, Isabela Tristan Lourenço, Rodrigo da Rocha Fragoso, Antônio Américo Barbosa Viana, Leonardo Lima Pepino Macedo, Maria Cristina Mattar da Silva, Regina Maria Gomes Carneiro, Gilbert Engler, Janice de Almeida-Engler, Maria Fátima Grossi‐de‐Sá
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0144937

From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity
Cited by: 28
Author(s): Geraldine Mulley, Michael L. Beeton, Paul Wilkinson, Isabella Vlisidou, Nina Ockendon-Powell, Alexia Hapeshi, Nicholas J. Tobias, Friederike I. Nollmann, Helge B. Bode, Jean M. H. van den Elsen, Richard H. ffrench-Constant, Nicholas R. Waterfield
Software Mentions: 2
Published: almost 11 years ago

10.1186/1755-8794-5-33

The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated
Cited by: 29
Author(s): Shubin Shahab, Lilya V. Matyunina, Christopher G. Hill, Limin Wang, Roman Mezencev, L. DeEtte Walker, John F. McDonald
Software Mentions: 2
Published: about 14 years ago

10.1002/brb3.1734

Brain reactions to the use of sensorized hand prosthesis in amputees
Cited by: 5
Author(s): Giuseppe Granata, Riccardo Di Iorio, Francesca Miraglia, Massimo Caulo, Francesco Iodice, Fabrizio Vecchio, Giacomo Valle, Ivo Strauss, Edoardo D’Anna, Francesco Iberite, Liverana Lauretti, Eduardo Fernández, Roberto Romanello, Francesco Maria Petrini, Staniša Raspopović, Silvestro Micera, Paolo Maria Rossini
Software Mentions: 2
Published: about 6 years ago

10.1155/2014/941486

Upregulation of Pluripotency Markers in Adipose Tissue-Derived Stem Cells by miR-302 and Leukemia Inhibitory Factor
Cited by: 18
Author(s): Masoumeh Fakhr Taha, Arash Javeri, Sara Rohban, Seyed Javad Mowla
Software Mentions: 2
Published: over 12 years ago

10.1002/brb3.2059

Effects of short‐term cognitive‐coping therapy on resting‐state brain function in obsessive‐compulsive disorder
Cited by: 7
Author(s): Jian‐Dong Ma, Chang‐Hong Wang, Ping Huang, Xunan Wang, Li‐Jing Shi, Hengfen Li, De‐En Sang, Shao‐Jie Kou, Zhi‐Rong Li, Haixing Zhao, Hongkai Lian, Xian‐Zhang Hu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0062865

Deep Sequencing Reveals Transcriptome Re-Programming of Taxus × media Cells to the Elicitation with Methyl Jasmonate
Cited by: 67
Author(s): Guiling Sun, Yongqiang Yang, Fuliang Xie, Jianfan Wen, Jianqiang Wu, Iain W. Wilson, Qi Tang, Hongwei Liu, Deyou Qiu
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0178460

Assessing the impact of Benzo[a]pyrene on Marine Mussels: Application of a novel targeted low density microarray complementing classical biomarker responses
Cited by: 53
Author(s): Mohamed Bannı, Susanna Sforzini, Volker M. Arlt, Audrey Barranger, Lorna J. Dallas, Caterina Oliveri, Yann Aminot, Beniamina Pacchioni, Caterina Millino, Gerolamo Lanfranchi, James W. Readman, Michael N. Moore, Aldo Viarengo, Awadhesh N. Jha
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0035549

Transcriptional Portrait of Actinobacillus pleuropneumoniae during Acute Disease - Potential Strategies for Survival and Persistence in the Host
Cited by: 32
Author(s): Kirstine Klitgaard, Carsten Friis, Tim Kåre Jensen, Øystein Angen, Mette Boye
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0077914

Regional Brain Atrophy and Functional Connectivity Changes Related to Fatigue in Multiple Sclerosis
Cited by: 63
Author(s): Álvaro Javier Cruz-Gómez, Noelia Ventura‐Campos, Antonio Belenguer, César Ávila, Cristina Forn
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0013450

Chronic Hypoxia Impairs Muscle Function in the Drosophila Model of Duchenne's Muscular Dystrophy (DMD)
Cited by: 17
Author(s): Matías Mosqueira, Gabriel Willmann, Hannele Ruohola‐Baker, Tejvir S. Khurana
Software Mentions: 2
Published: almost 16 years ago

10.22074/cellj.2020.6582

Cardiac Differentiation of Adipose Tissue-Derived Stem Cells Is Driven by BMP4 and bFGF but Counteracted by 5-Azacytidine and Valproic Acid.
Cited by: 3
Author(s): Sanaz Hasani, Arash Javeri, Asadollah Asadi, Masoumeh Fakhr Taha
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0136820

Reference Gene Selection for qPCR Analysis in Tomato-Bipartite Begomovirus Interaction and Validation in Additional Tomato-Virus Pathosystems
Cited by: 40
Author(s): A. L. M. Lacerda, Leonardo N. Fonseca, Rosana Blawid, L. S. Boiteux, S. G. Ribeiro, Ana Cristina Miranda Brasileiro
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-015-1526-0

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
Cited by: 31
Author(s): Alexander Lichius, Frédérique Bidard, Franziska Buchholz, Stéphane Le Crom, Joel Martin, Wendy Schackwitz, Tina Austerlitz, Igor V. Grigoriev, Scott E. Baker, Antoine Margeot, Bernhard Schink, Christian P. Kubicek
Software Mentions: 2
Published: over 11 years ago

10.1186/s12911-014-0123-5

A RESTful interface to pseudonymization services in modern web applications
Cited by: 54
Author(s): Martin Lablans, Andreas Borg, Frank Ückert
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0108200

Comparative Transcriptome Analysis Reveals the Genetic Basis of Skin Color Variation in Common Carp
Cited by: 72
Author(s): Yanliang Jiang, Songhao Zhang, Jian Xu, Jianxin Feng, Shahid Mahboob, Khalid A. Al‐Ghanim, Xin Sun, Peng Xu
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0063081

Early-Stage Psychotherapy Produces Elevated Frontal White Matter Integrity in Adult Major Depressive Disorder
Cited by: 29
Author(s): Tao Wang, Xiaolan Huang, Peiyu Huang, Dan Li, Fajin Lv, Yong Zhang, Linke Zhou, Deyu Yang, Peng Xie
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0065224

The Enterococcus faecium Enterococcal Biofilm Regulator, EbrB, Regulates the esp Operon and Is Implicated in Biofilm Formation and Intestinal Colonization
Cited by: 28
Author(s): Janetta Top, Fernanda L. Paganelli, Xinglin Zhang, Willem van Schaik, Helen L. Leavis, Miranda van Luit-Asbroek, Tom van der Poll, Masja Leendertse, Marc J. M. Bonten, Rob J. L. Willems
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0228680

Comparative transcriptome provides molecular insight into defense-associated mechanisms against spider mite in resistant and susceptible common bean cultivars
Cited by: 13
Author(s): Abdul Hadi Hoseinzadeh, Aboozar Soorni, Marie Shoorooei, Masoud Torkzadeh Mahani, R Maali Amiri, Hossein Allahyari, Reza Mohammadi
Software Mentions: 2
Published: over 6 years ago

10.1007/s10548-019-00706-y

The Statistics of EEG Unipolar References: Derivations and Properties
Cited by: 20
Author(s): Shiang Hu, Dezhong Yao, María L. Bringas-Vega, Yun Qin, Pedro A. Valdés‐Sosa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1002624

A Genome-Wide Screen for Genetic Variants That Modify the Recruitment of REST to Its Target Genes
Cited by: 15
Author(s): Rory Johnson, Nadine Richter, Gireesh K. Bogu, Akshay Bhinge, Siaw Wei Teng, Siew Hua Choo, Lise O. Andrieux, Cinzia De Benedictis, Ralf Jauch, Lawrence W. Stanton
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pgen.1003915

FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus nematophila Bacterial Cells
Cited by: 24
Author(s): Grégory Jubelin, Anne Lanois, Dany Séverac, Stéphanie Rialle, C. F. H. Longin, Sophie Gaudriault, Alain Givaudan
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2164-15-854

Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Cited by: 33
Author(s): Sinara Artico, Marcelo Ribeiro-Alves, O. B. Oliveira-Neto, Leonardo Lima Pepino Macedo, Sylvia Rodrigues da Silveira, Maria Fátima Grossi‐de‐Sá, Adriana Pinheiro Martinelli, Márcio Alves‐Ferreira
Software Mentions: 2
Published: almost 12 years ago

10.1155/2015/202914

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model
Cited by: 3
Author(s): José Manuel García-Manteiga, Silvia Bonfiglio, Maria Luisa Malosio, Dejan Lazarevic, Elia Stupka, Davide Cittaro, Jacopo Meldolesi
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1003994

Transcription Factor Occupancy Can Mediate Active Turnover of DNA Methylation at Regulatory Regions
Cited by: 201
Author(s): Angelika Feldmann, Robert Ivánek, Rabih Murr, Dimos Gaidatzis, Lukas Burger, Dirk Schübeler
Software Mentions: 2
Published: almost 13 years ago

10.3390/plants10040758

The EAR Motif in the Arabidopsis MADS Transcription Factor AGAMOUS-Like 15 Is Not Necessary to Promote Somatic Embryogenesis
Cited by: 6
Author(s): Sanjay Joshi, Christian Keller, Sharyn E. Perry
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2180-12-S1-S1

Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare
Cited by: 45
Author(s): Frédéric D. Chevalier, Juline Herbinière-Gaboreau, Delphine Charif, Guillaume Mitta, Frédérick Gavory, Patrick Wincker, Pierre Grève, Christine Braquart‐Varnier, Didier Bouchon
Software Mentions: 2
Published: over 14 years ago

10.1155/2015/824710

Exploring Dynamic Brain Functional Networks Using Continuous “State-Related” Functional MRI
Cited by: 7
Author(s): Xun Li, Yu‐Feng Zang, Han Zhang
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2407-11-45

Effects of EpCAM overexpression on human breast cancer cell lines
Cited by: 64
Author(s): Johanna M. Gostner, Dominic Fong, Oliver A. Wrulich, Florian Lehne, Marion Zitt, Michael Hermann, Sylvia Krobitsch, Agnieszka Martowicz, Guenther Gastl, Gilbert Spizzo
Software Mentions: 2
Published: over 15 years ago

10.3389/fmolb.2021.633130

Mutations of N1 Riboswitch Affect its Dynamics and Recognition by Neomycin Through Conformational Selection
Cited by: 8
Author(s): Piotr Chyży, Marta Kulik, Suyong Re, Yuji Sugita, Joanna Trylska
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-11-698

Comparative profiling of the transcriptional response to iron restriction in six serotypes of Actinobacillus pleuropneumoniae with different virulence potential
Cited by: 21
Author(s): Kirstine Klitgaard, Carsten Friis, Øystein Angen, Mette Boye
Software Mentions: 2
Published: over 16 years ago

10.1186/s13567-017-0430-9

Permissiveness of bovine epithelial cells from lung, intestine, placenta and udder for infection with Coxiella burnetii
Cited by: 19
Author(s): Katharina Sobotta, Katharina Bonkowski, Elisabeth M. Liebler-Tenorio, Pierre Germon, Pascal Rainard, Nina Hambruch, Christiane Pfarrer, Ilse D. Jacobsen, Christian Menge
Software Mentions: 2
Published: over 9 years ago

10.1002/vms3.430

Marham‐Mafasel decrease joint inflammation and IL‐1β gene expression in rheumatoid arthritis animal model
Cited by: 3
Author(s): Mohammad Majidi, Fatemeh Heidarnejad, Mohsen Naseri, Shahin Bonakdar, Maryam Salimi, Roya Yaraee
Software Mentions: 2
Published: over 5 years ago

10.3389/fneur.2013.00043

Local Functional Connectivity as a Pre-Surgical Tool for Seizure Focus Identification in Non-Lesion, Focal Epilepsy
Cited by: 40
Author(s): Kurt E. Weaver, Wanpracha Art Chaovalitwongse, Edward J. Novotny, Andrew Poliakov, T. G. Grabowski, Jeffrey G. Ojemann
Software Mentions: 2
Published: over 13 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2018.00827

TPH-2 Gene Polymorphism in Major Depressive Disorder Patients With Early-Wakening Symptom
Cited by: 16
Author(s): Shiwan Tao, Mohammad Ridwan Chattun, Rui Yan, Jiting Geng, Rong Zhu, Junneng Shao, Qing Lü, Zhijian Yao
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-015-1574-5

Key genes as stress indicators in the ubiquitous diatom Skeletonema marinoi
Cited by: 35
Author(s): Chiara Lauritano, Ida Orefice, Gabriele Procaccini, Giovanna Romano, Adrianna Ianora
Software Mentions: 2
Published: over 11 years ago

10.3389/fnins.2019.01341

Editorial: Through a Glass, Darkly: The Influence of the EEG Reference on Inference About Brain Function and Disorders
Cited by: 5
Author(s): María Luisa Bringas Vega, Paul L. Nunez, Jorge J. Riera, Rui Zhang, Pedro A. Valdés‐Sosa
Software Mentions: 2
Published: almost 7 years ago

10.3389/fnins.2019.00221

Graph Theoretical Characteristics of EEG-Based Functional Brain Networks in Patients With Epilepsy: The Effect of Reference Choice and Volume Conduction
Cited by: 17
Author(s): Maria Anastasiadou, Manolis Christodoulakis, Eleftherios S. Papathanasiou, Savvas Papacostas, Avgis Hadjipapas, Georgios D. Mitsis
Software Mentions: 2
Published: over 7 years ago

10.3390/md17030144

Molecular and Morphological Toxicity of Diatom-Derived Hydroxyacid Mixtures to Sea Urchin Paracentrotus lividus Embryos
Cited by: 7
Author(s): Luisa Albarano, Nadia Ruocco, Adrianna Ianora, Giovanni Libralato, Loredana Manfra, Maria Costantini
Software Mentions: 2
Published: over 7 years ago

10.3390/md18090477

Insights into the Light Response of Skeletonema marinoi: Involvement of Ovothiol
Cited by: 13
Author(s): Alfonsina Milito, Ida Orefice, Arianna Smerilli, Immacolata Castellano, Alessandra Napolitano, Christophe Brunet, Anna Palumbo
Software Mentions: 2
Published: about 6 years ago

10.1186/s12864-018-5039-5

Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model
Cited by: 46
Author(s): Lyudmila V. Dergunova, Ivan B. Filippenkov, Vasily V. Stavchansky, Alina E. Denisova, Vadim V. Yuzhakov, С. А. Мозеров, Leonid V. Gubsky, Svetlana A. Limborska
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0007743

An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum
Cited by: 216
Author(s): Marianne Nymark, Kristin Collier Valle, Tore Brembu, Kasper Hancke, Per Winge, Kjersti Andresen, Geir Johnsen, Atle M. Bones
Software Mentions: 2
Published: almost 17 years ago

10.3389/fnins.2016.00313

Systemic Low-Frequency Oscillations in BOLD Signal Vary with Tissue Type
Cited by: 25
Author(s): Yunjie Tong, Lia M. Hocke, Kimberly P. Lindsey, Sinem Burcu Erdoğan, Gordana Vitaliano, Carolyn E. Caine, Blaise deB. Frederick
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0159934

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)
Cited by: 63
Author(s): Mónica B. Betancor, Matthew Sprague, Olga Sayanova, Sarah Usher, Christoforos Metochis, Patrick Campbell, Johnathan A. Napier, Douglas R. Tocher
Software Mentions: 2
Published: about 10 years ago

10.3389/fnins.2018.00148

Hearing the Sound in the Brain: Influences of Different EEG References
Cited by: 5
Author(s): Dan Wu
Software Mentions: 2
Published: over 8 years ago

10.3389/fnhum.2020.574148

Brain Responses to Food Odors Associated With BMI Change at 2-Year Follow-Up
Cited by: 6
Author(s): Pengfei Han, Hong Chen, Thomas Hummel
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.17944

Disrupted functional connectivity between perirhinal and parahippocampal cortices with hippocampal subfields in patients with mild cognitive impairment and Alzheimer's disease
Cited by: 4
Author(s): Yu Sun, Yafei Wang, Jiaming Lu, Rengyuan Liu, Christopher G. Schwarz, Hui Zhao, Yue Zhang, Lu Xu, Bin Zhu, Bing Zhang, Bing Liu, Shui Wan, Yun Xu
Software Mentions: 2
Published: over 9 years ago

10.3389/fnhum.2015.00386

GRETNA: a graph theoretical network analysis toolbox for imaging connectomics
Cited by: 544
Author(s): Jinhui Wang, Xindi Wang, Mingrui Xia, Xuhong Liao, Alan C. Evans, Yong He
Software Mentions: 2
Published: about 11 years ago

10.18632/oncotarget.27693

Differentially expressed full-length, fusion and novel isoforms transcripts-based signature of well-differentiated keratinized oral squamous cell carcinoma
Cited by: 9
Author(s): Neetu Singh, Dinesh Kumar Sahu, Ratnesh Kumar Tripathi, Archana Mishra, Hari Shyam, Pratap Shankar, Mayank Jain, Nawazish Alam, Anil Kumar, Abhishek Mishra, Rebecca Chowdhry, Anjana Singh, Sudeep Gupta, Divya Mehrotra, Preeti Agarwal, Madhu Mati Goel, Arun Chaturvedi, Saurabh Agarwal, Manish Kumar Bajpai, Devendra K. Gupta, Madan Lal Brahma Bhatt, Ravi Kant
Software Mentions: 2
Published: about 6 years ago

10.3389/fnhum.2019.00365

Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming
Cited by: 9
Author(s): Caroline Garcia Forlim, Lukas Bittner, Fariba Mostajeran, Frank Steinicke, Jürgen Gallinat, Simone Kühn
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1009481

TcpC inhibits toll-like receptor signaling pathway by serving as an E3 ubiquitin ligase that promotes degradation of myeloid differentiation factor 88
Cited by: 6
Author(s): Jiaqi Fang, Qian Ou, Jun Pan, Dayong Zhang, Miao-Qi Qiu, Yue-Qi Li, Xiaohui Wang, Xue-Yu Yang, Zhe Chi, Wei Gao, Jing Guo, Thomas Miethke, Jianping Pan
Software Mentions: 2
Published: over 5 years ago

10.1111/joa.12977

Altered haemodynamics causes aberrations in the epicardium
Cited by: 4
Author(s): Chrysostomos Perdios, Matthew Parnall, Kar Lai Pang, Siobhan Loughna
Software Mentions: 2
Published: over 7 years ago

10.1128/JVI.00876-19

Transcriptional Response of Ovine Lung to Infection with Jaagsiekte Sheep Retrovirus
Cited by: 12
Author(s): Anna Eleonora Karagianni, Deepali Vasoya, J. Finlayson, Henny Martineau, Ann R. Wood, Chris Cousens, Mark P. Dagleish, Michael Watson, David J. Griffiths
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.pneurobio.2020.101790

MeCP2 mediates transgenerational transmission of chronic pain
Cited by: 10
Author(s): Wenjuan Tao, Changmao Chen, Yuping Wang, Wenjie Zhou, Yan Jin, Yu Mao, Haitao Wang, Likui Wang, Wen Xie, Xulai Zhang, Jie Li, Juan Li, Xiang-Yao Li, Zhen Quan Tang, Chenghua Zhou, Zhizhong Z. Pan, Zhi Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/srep37617

Structural and Functional Connectivity of Default Mode Network underlying the Cognitive Impairment in Late-onset Depression
Cited by: 32
Author(s): Yingying Yin, Xiaofu He, Mingze Xu, Zhenghua Hou, Xiaopeng Song, Yuxiu Sui, Zhi Li, Wenhao Jiang, Yingying Yue, Yuqun Zhang, Yijun Liu, Yonggui Yuan
Software Mentions: 2
Published: almost 10 years ago

10.1186/1479-5876-10-186

Circulating miR-200c as a diagnostic and prognostic biomarker for gastric cancer
Cited by: 137
Author(s): Manuel Valladares‐Ayerbes, Margarita Reboredo, V. Medina-Villaamil, Pilar Iglesias-Díaz, María J. Lorenzo-Patiño, Mar Haz, Isabel Santamarina, Miguel Blanco, Juan Fernández‐Tajes, María Quindós, Alberto Carral, Angélica Figueroa, Luis Antón-Aparicio, Lourdes Calvo
Software Mentions: 2
Published: about 14 years ago

10.1155/2018/5045734

Antifibrotic Effect of Marine Ovothiol in an In Vivo Model of Liver Fibrosis
Cited by: 23
Author(s): Mariarita Brancaccio, Giuseppe D’Argenio, Vincenzo Lembo, Anna Palumbo, Immacolata Castellano
Software Mentions: 2
Published: almost 8 years ago

10.1002/pro.3978

The <scp>BioGRID</scp> database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
Cited by: 612
Author(s): Rose Oughtred, Jennifer Rust, Christie S. Chang, Bobby-Joe Breitkreutz, Chris Stark, Andrew Willems, Lorrie Boucher, Genie Leung, Nadine K. Kolas, Frederick Zhang, Sonam Dolma, Jasmin Coulombe-Huntington, Andrew Chatr‐aryamontri, Kara Dolinski, Mike Tyers
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep39049

Interactomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation
Cited by: 17
Author(s): Namgyu Lee, Sung Jin Park, Ghazal Haddad, Dae-Kyum Kim, Seon‐Min Park, Sang Ki Park, Kwan Yong Choi
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep42278

Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents
Cited by: 20
Author(s): Irene Olivé, João Silva, Chiara Lauritano, Monya M. Costa, Miriam Ruocco, Gabriele Procaccini, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42890

Depth-specific fluctuations of gene expression and protein abundance modulate the photophysiology in the seagrass Posidonia oceanica
Cited by: 47
Author(s): Gabriele Procaccini, Miriam Ruocco, Lázaro Marín-Guirao, Emanuela Dattolo, Christophe Brunet, Daniela D’Esposito, Chiara Lauritano, Silvia Mazzuca, Ilia Anna Serra, Letizia Bernardo, Amalia Piro, Sven Beer, Mats Björk, Martin Gullström, Pimchanok Buapet, Lina M. Rasmusson, Paulo Felisberto, Sylvie Gobert, John W. Runcie, João Silva, Irene Olivé, Monya M. Costa, Isabel Barrote, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.3389/fnhum.2020.585664

Increased Amygdala-Paracentral Lobule/Precuneus Functional Connectivity Associated With Patients With Mood Disorder and Suicidal Behavior
Cited by: 14
Author(s): Ran Zhang, Luheng Zhang, Shengnan Wei, Pengshuo Wang, Xiaowei Jiang, Yanqing Tang, Fei Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/1465-9921-14-85

Carcinoembryonic antigen (CEA)-related cell adhesion molecules are co-expressed in the human lung and their expression can be modulated in bronchial epithelial cells by non-typable Haemophilus influenzae, Moraxella catarrhalis, TLR3, and type I and II interferons
Cited by: 59
Author(s): Esther Klaile, Tilman E. Klassert, Inka Scheffrahn, Müller Mm, A Heinrich, Kerstin A. Heyl, Hendrik Dienemann, Christian Grünewald, Robert Bals, Bernhard B. Singer, Hortense Slevogt
Software Mentions: 2
Published: about 13 years ago

10.1016/j.exer.2019.03.024

Mutation in the mouse histone gene Hist2h3c1 leads to degeneration of the lens vesicle and severe microphthalmia
Cited by: 4
Author(s): Sharmilee Vetrivel, Natascia Tiso, Andrea Kügler, Martin Irmler, Marion Horsch, Johannes Beckers, Daniela Hladik, Florian Giesert, Valérie Gailus‐Durner, Helmut Fuchs, Sibylle Sabrautzki, Martin Hrabé de Angelis, Jochen Graw
Software Mentions: 2
Published: almost 7 years ago

10.3389/fnhum.2015.00074

Differential cerebral response to somatosensory stimulation of an acupuncture point vs. two non-acupuncture points measured with EEG and fMRI
Cited by: 27
Author(s): Till Nierhaus, Daniel Pach, Weixin Huang, Xiangyu Long, Vitaly Napadow, Stephanie Roll, Fanrong Liang, Burkhard Pleger, Arno Villringer, Claudia M. Witt
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-07236-2

Integration of miRNA and mRNA expression profiles reveals microRNA-regulated networks during muscle wasting in cardiac cachexia
Cited by: 37
Author(s): Leonardo Nazário de Moraes, Geysson Javier Fernández, Ivan J. Vechetti, Paula Paccielli Freire, Rodrigo Wagner Alves de Souza, Rolando A R Villacis, Sílvia Regina Rogatto, Patrícia P. Reis, Maeli Dal-Pai-Silva, Robson Francisco Carvalho
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-12092-1

De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential
Cited by: 51
Author(s): Chiara Lauritano, Danièle De Luca, Alberto Ferrarini, C. Avanzato, Andrea Minio, Francesco Esposito, Adrianna Ianora
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-14075-8

Nutrient Loading Fosters Seagrass Productivity Under Ocean Acidification
Cited by: 27
Author(s): Chiara Ravaglioli, Chiara Lauritano, María Cristina Buia, Elena Balestri, Antonella Capocchi, Debora Fontanini, G. Pardi, Laura Tamburello, Gabriele Procaccini, Fabio Bulleri
Software Mentions: 2
Published: almost 9 years ago

10.1186/1758-2946-2-5

Towards interoperable and reproducible QSAR analyses: Exchange of datasets
Cited by: 39
Author(s): Ola Spjuth, Egon Willighagen, Rajarshi Guha, Martin Eklund, Jarl E. S. Wikberg
Software Mentions: 2
Published: about 16 years ago

10.3389/fnhum.2018.00322

Mapping the Spatiotemporal Evolution of Emotional Processing: An MEG Study Across Arousal and Valence Dimensions
Cited by: 11
Author(s): Charis Styliadis, Andreas A. Ioannides, Panagiotis D. Bamidis, Christos Papadelis
Software Mentions: 2
Published: about 8 years ago

10.3389/fbioe.2019.00106

Cyberbiosecurity Challenges of Pathogen Genome Databases
Cited by: 15
Author(s): Boris A. Vinatzer, Lenwood S. Heath, Hussain M. J. Almohri, Michael J. Stulberg, Christopher J. Lowe, Song Li
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-24023-9

Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis
Cited by: 25
Author(s): Nadia Ruocco, Susan Costantini, Valerio Zupo, Chiara Lauritano, Davide Caramiello, Adrianna Ianora, Alfredo Budillon, Giovanna Romano, Genoveffa Nuzzo, Giuliana d’Ippolito, Angelo Fontana, Maria Costantini
Software Mentions: 2
Published: over 8 years ago

10.1002/hbm.25305

Predicting visual working memory with multimodal magnetic resonance imaging
Cited by: 11
Author(s): Xiaomei Yu, Ying Lin, Junji Ma, Jiehui Qian, Zijun Ke, Liangfang Li, Yangyang Yi, Jinbo Zhang, Cam‐CAN, Zhengjia Dai
Software Mentions: 2
Published: almost 6 years ago

10.1002/hbm.24384

Focal application of accelerated iTBS results in global changes in graph measures
Cited by: 6
Author(s): Debby Klooster, Suzanne L. Franklin, René M.H. Besseling, Jaap F.A. Jansen, Karen Caeyenberghs, Romain Duprat, Albert P. Aldenkamp, A.J.A. de Louw, Paul Boon, Chris Baeken
Software Mentions: 2
Published: almost 8 years ago

10.1002/hbm.25429

Taking the body off the mind: Decreased functional connectivity between somatomotor and default‐mode networks following Floatation‐REST
Cited by: 12
Author(s): Obada Al Zoubi, Masaya Misaki, Jerzy Bodurka, Rayus Kuplicki, Colleen Wohlrab, William A. Schoenhals, Hazem H. Refai, Sahib S. Khalsa, Murray B. Stein, Martin P. Paulus, Justin S. Feinstein
Software Mentions: 2
Published: over 5 years ago

10.3389/fnhum.2014.00409

Network complexity as a measure of information processing across resting-state networks: evidence from the Human Connectome Project
Cited by: 101
Author(s): Ian M. McDonough, Kaoru Nashiro
Software Mentions: 2
Published: over 12 years ago

Projects: cran: REST

Science Score: 75/100

Penalties:

Papers Mentioning REST 1,757