cran: REST | Projects | Ecosyste.ms: Papers

10.1186/1755-8794-2-65

Gene expression profiling in sinonasal adenocarcinoma
Cited by: 32
Author(s): Dominique Tripodi, Sylvia Quéméner, Karine Renaudin, Christophe Ferron, O. Malard, Isabelle Guisle‐Marsollier, Véronique Sebille, Christian Verger, C. Géraut, Catherine Gratas
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0233088

Betanin purification from red beetroots and evaluation of its anti-oxidant and anti-inflammatory activity on LPS-activated microglial cells
Cited by: 26
Author(s): Hosein Ahmadi, Zahra Nayeri, Zarrin Minuchehr, Farzaneh Sabouni, Mehdi Mohammadi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0028254

Filaggrin Genotype Determines Functional and Molecular Alterations in Skin of Patients with Atopic Dermatitis and Ichthyosis Vulgaris
Cited by: 60
Author(s): M Winge, Torborg Hoppe, Berit Berne, Anders Vahlquist, Magnus Nordenskjöld, J. F. N. Bradley, Hans Törmä
Software Mentions: 2
Published: about 14 years ago

10.1038/s42003-019-0342-5

Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity
Cited by: 13
Author(s): Yuanyuan Cheng, Mariano Makara, Emma Peel, Samantha Fox, Anthony T. Papenfuss, Katherine Belov
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0050064

Differential Deactivation during Mentalizing and Classification of Autism Based on Default Mode Network Connectivity
Cited by: 92
Author(s): Donna L. Murdaugh, Svetlana V. Shinkareva, Hrishikesh R. Deshpande, Jing Wang, Mark R. Pennick, Rajesh K. Kana
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0159563

Glutathione S-Transferase Regulation in Calanus finmarchicus Feeding on the Toxic Dinoflagellate Alexandrium fundyense
Cited by: 9
Author(s): Vittoria Roncalli, Michelle J. Jungbluth, Petra H. Lenz
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0212089

In vitro evaluation of the protective effects of plant extracts against amyloid-beta peptide-induced toxicity in human neuroblastoma SH-SY5Y cells
Cited by: 23
Author(s): Ana Luiza Sereia, Marcelo Tempesta de Oliveira, Adrivânio Baranoski, Leila Larisa Medeiros Marques, Fabianne Martins Ribeiro, Raquel Garcia Isolani, Daniela Cristina de Medeiros Araújo, Danielly Chierrito, Danielle Lazarin-Bidóia, Acácio Antônio Ferreira Zielinski, Cláudio Roberto Novello, Celso Vataru Nakamura, Mário Mantovani, João Carlos Palazzo de Mello
Software Mentions: 2
Published: almost 7 years ago

10.1007/s12551-016-0234-6

Analytical methods for structural ensembles and dynamics of intrinsically disordered proteins
Cited by: 15
Author(s): Marieke Schor, Antonia S. J. S. Mey, Cait E. MacPhee
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0120345

Default Mode Network, Motor Network, Dorsal and Ventral Basal Ganglia Networks in the Rat Brain: Comparison to Human Networks Using Resting State-fMRI
Cited by: 53
Author(s): Adam Sierakowiak, Cyril Monnot, Sahar Nikkhou Aski, Martin Uppman, Tie‐Qiang Li, Peter Damberg, Stefan Brené
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0076234

NR4A2 Is Regulated by Gastrin and Influences Cellular Responses of Gastric Adenocarcinoma Cells
Cited by: 13
Author(s): Kristine Misund, Linn-Karina M. Selvik, Shalini Rao, Kristin G. Nørsett, Ingrid Bakke, Arne K. Sandvik, Astrid Lægreid, Torunn Bruland, Wenche S. Prestvik, Liv Thommesen
Software Mentions: 2
Published: about 12 years ago

10.3390/biom10050743

Targeting Intrinsically Disordered Proteins through Dynamic Interactions
Cited by: 30
Author(s): Jianlin Chen, Xiaorong Liu, Jianhan Chen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0115867

Identification of Genes Associated with Reproduction in the Mud Crab (Scylla olivacea) and Their Differential Expression following Serotonin Stimulation
Cited by: 19
Author(s): Napamanee Kornthong, Scott F. Cummins, Charoonroj Chotwiwatthanakun, Kanjana Khornchatri, Attakorn Engsusophon, Peter Hanna, Prasert Sobhon
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0098346

Structural and Functional Brain Alterations in End Stage Renal Disease Patients on Routine Hemodialysis: A Voxel-Based Morphometry and Resting State Functional Connectivity Study
Cited by: 51
Author(s): Yingwei Qiu, Xiaofei Lv, Huanhuan Su, Guihua Jiang, Cheng Li, Tian Jian-guo
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0089463

Effect of Age on Complexity and Causality of the Cardiovascular Control: Comparison between Model-Based and Model-Free Approaches
Cited by: 80
Author(s): Alberto Porta, Luca Faes, Vlasta Bari, Andrea Marchi, Tito Bassani, Giandomenico Nollo, Natália Maria Perseguini, Juliana Cristina Milan, Vinícius Minatel, Audrey Borghi‐Silva, Anielle Cristhine de Medeiros Takahashi, Aparecida Maria Catai
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0175415

An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry
Cited by: 64
Author(s): Mónica B. Betancor, Keshuai Li, Matthew Sprague, Tora Bardal, Olga Sayanova, Sarah Usher, Lihua Han, Kjell Måsøval, Ole Torrissen, Johnathan A. Napier, Douglas R. Tocher, Rolf Erik Olsen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0124681

Frequency Dependent Topological Patterns of Resting-State Brain Networks
Cited by: 32
Author(s): Long Qian, Yi Zhang, Li Zheng, Yuqing Shang, Jia‐Hong Gao, Yijun Liu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0215729

Reference genes selection for Calotropis procera under different salt stress conditions
Cited by: 6
Author(s): Maria Reis Valois Coêlho, Rebeca Rivas, José Ribamar Costa Ferreira‐Neto, Valesca Pandolfi, João Pacífico Bezerra-Neto, Ana Maria Benko‐Iseppon, Mariana Santos
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0121169

T-Cell Activation and Early Gene Response in Dogs
Cited by: 10
Author(s): Sally Mortlock, Jerry Wei, Peter Williamson
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0243869

Evaluation of the impact of surgical aortic valve replacement on short-term cardiovascular and cerebrovascular controls through spontaneous variability analysis
Cited by: 6
Author(s): Alberto Porta, Angela Fantinato, Vlasta Bari, Francesca Gelpi, Beatrice Cairo, Beatrice De Maria, Enrico Giuseppe Bertoldo, Valentina Fiolo, Edward Callus, Carlo De Vincentiis, Marianna Volpe, Raffaella Molfetta, Marco Ranucci
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0173289

Comparing resting state fMRI de-noising approaches using multi- and single-echo acquisitions
Cited by: 68
Author(s): Ottavia Dipasquale, Arjun Sethi, Maria Marcella Laganà, Francesca Baglio, Giuseppe Baselli, Prantik Kundu, Neil A. Harrison, Mara Cercignani
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0148451

Identification and Validation of Reference Genes and Their Impact on Normalized Gene Expression Studies across Cultivated and Wild Cicer Species
Cited by: 37
Author(s): D. Srinivas Reddy, Pooja Bhatnagar‐Mathur, Palakolanu Sudhakar Reddy, Katamreddy Sri Cindhuri, Adusumalli Sivaji Ganesh, Kiran K. Sharma
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0144937

From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity
Cited by: 28
Author(s): Geraldine Mulley, Michael L. Beeton, Paul Wilkinson, Isabella Vlisidou, Nina Ockendon-Powell, Alexia Hapeshi, Nicholas J. Tobias, Friederike I. Nollmann, Helge B. Bode, Jean M. H. van den Elsen, Richard H. ffrench-Constant, Nicholas R. Waterfield
Software Mentions: 2
Published: almost 10 years ago

10.1186/1755-8794-5-33

The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated
Cited by: 29
Author(s): Shubin Shahab, Lilya V. Matyunina, Christopher G. Hill, Limin Wang, Roman Mezencev, L. DeEtte Walker, John F. McDonald
Software Mentions: 2
Published: over 13 years ago

10.1002/brb3.1734

Brain reactions to the use of sensorized hand prosthesis in amputees
Cited by: 5
Author(s): Giuseppe Granata, Riccardo Di Iorio, Francesca Miraglia, Massimo Caulo, Francesco Iodice, Fabrizio Vecchio, Giacomo Valle, Ivo Strauss, Edoardo D’Anna, Francesco Iberite, Liverana Lauretti, Eduardo Fernández, Roberto Romanello, Francesco Maria Petrini, Staniša Raspopović, Silvestro Micera, Paolo Maria Rossini
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/5565824

Decoding of Motor Coordination Imagery Involving the Lower Limbs by the EEG-Based Brain Network
Cited by: 2
Author(s): Yunfa Fu, Zhouzhou Zhou, Anmin Gong, Qian Qian, Lei Su, Zhixin Lei
Software Mentions: 2
Published: over 4 years ago

10.1002/brb3.2059

Effects of short‐term cognitive‐coping therapy on resting‐state brain function in obsessive‐compulsive disorder
Cited by: 7
Author(s): Jian‐Dong Ma, Chang‐Hong Wang, Ping Huang, Xunan Wang, Li‐Jing Shi, Hengfen Li, De‐En Sang, Shao‐Jie Kou, Zhi‐Rong Li, Haixing Zhao, Hongkai Lian, Xian‐Zhang Hu
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-13-448

Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar)
Cited by: 92
Author(s): Sofía Morais, Tomé S. Silva, Odete Cordeiro, Pedro M. Rodrigues, D. R. Guy, James E. Bron, John B. Taggart, J. Gordon Bell, Douglas R. Tocher
Software Mentions: 2
Published: almost 14 years ago

10.1155/2016/1035945

Modeling Gene Regulation in Liver Hepatocellular Carcinoma with Random Forests
Cited by: 7
Author(s): Hilal Kazan
Software Mentions: 2
Published: almost 10 years ago

10.1155/2015/719076

Insulin Resistance-Associated Interhemispheric Functional Connectivity Alterations in T2DM: A Resting-State fMRI Study
Cited by: 27
Author(s): Wenqing Xia, Shaohua Wang, Andrea M. Spaeth, Hengyi Rao, Pin Wang, Yue Yang, Rong Huang, Rongrong Cai, Hao Sun
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0077914

Regional Brain Atrophy and Functional Connectivity Changes Related to Fatigue in Multiple Sclerosis
Cited by: 63
Author(s): Álvaro Javier Cruz-Gómez, Noelia Ventura‐Campos, Antonio Belenguer, César Ávila, Cristina Forn
Software Mentions: 2
Published: about 12 years ago

10.1007/s00253-017-8161-4

Trichoderma reesei xylanase 5 is defective in the reference strain QM6a but functional alleles are present in other wild-type strains
Cited by: 8
Author(s): Jonas Ramoni, Martina Marchetti‐Deschmann, Verena Seidl‐Seiboth, Bernhard Schink
Software Mentions: 2
Published: almost 9 years ago

10.22074/cellj.2020.6582

Cardiac Differentiation of Adipose Tissue-Derived Stem Cells Is Driven by BMP4 and bFGF but Counteracted by 5-Azacytidine and Valproic Acid.
Cited by: 3
Author(s): Sanaz Hasani, Arash Javeri, Asadollah Asadi, Masoumeh Fakhr Taha
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0182407

Protective effects on the retina after ranibizumab treatment in an ischemia model
Cited by: 23
Author(s): Stephanie C. Joachim, Marina Renner, Jacqueline Reinhard, Carsten Theiß, Caroline May, Stephanie Lohmann, Sabrina Reinehr, Gesa Stute, Andréas Faissner, Katrin Marcus, H. Burkhard Dick
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-11-455

Gene expression profiling in the lungs of pigs with different susceptibilities to Glässer's disease
Cited by: 23
Author(s): Jamie M. Wilkinson, Carole A. Sargent, L. Galina-Pantoja, Alexander W. Tucker
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12911-014-0123-5

A RESTful interface to pseudonymization services in modern web applications
Cited by: 54
Author(s): Martin Lablans, Andreas Borg, Frank Ückert
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0085364

Knocking-Down Meloidogyne incognita Proteases by Plant-Delivered dsRNA Has Negative Pleiotropic Effect on Nematode Vigor
Cited by: 50
Author(s): José Dijair Antonino de Souza Júnior, Roberta Ramos Coelho, Isabela Tristan Lourenço, Rodrigo da Rocha Fragoso, Antônio Américo Barbosa Viana, Leonardo Lima Pepino Macedo, Maria Cristina Mattar da Silva, Regina Maria Gomes Carneiro, Gilbert Engler, Janice de Almeida-Engler, Maria Fátima Grossi‐de‐Sá
Software Mentions: 2
Published: almost 12 years ago

10.1155/2014/941486

Upregulation of Pluripotency Markers in Adipose Tissue-Derived Stem Cells by miR-302 and Leukemia Inhibitory Factor
Cited by: 18
Author(s): Masoumeh Fakhr Taha, Arash Javeri, Sara Rohban, Seyed Javad Mowla
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0062865

Deep Sequencing Reveals Transcriptome Re-Programming of Taxus × media Cells to the Elicitation with Methyl Jasmonate
Cited by: 67
Author(s): Guiling Sun, Yongqiang Yang, Fuliang Xie, Jianfan Wen, Jianqiang Wu, Iain W. Wilson, Qi Tang, Hongwei Liu, Deyou Qiu
Software Mentions: 2
Published: over 12 years ago

10.1093/database/bav049

An Ebola virus-centered knowledge base
Cited by: 13
Author(s): Maulik R. Kamdar, Michel Dumontier
Software Mentions: 2
Published: almost 11 years ago

10.1007/s10548-019-00706-y

The Statistics of EEG Unipolar References: Derivations and Properties
Cited by: 20
Author(s): Shiang Hu, Dezhong Yao, María L. Bringas-Vega, Yun Qin, Pedro A. Valdés‐Sosa
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0178460

Assessing the impact of Benzo[a]pyrene on Marine Mussels: Application of a novel targeted low density microarray complementing classical biomarker responses
Cited by: 53
Author(s): Mohamed Bannı, Susanna Sforzini, Volker M. Arlt, Audrey Barranger, Lorna J. Dallas, Caterina Oliveri, Yann Aminot, Beniamina Pacchioni, Caterina Millino, Gerolamo Lanfranchi, James W. Readman, Michael N. Moore, Aldo Viarengo, Awadhesh N. Jha
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0035549

Transcriptional Portrait of Actinobacillus pleuropneumoniae during Acute Disease - Potential Strategies for Survival and Persistence in the Host
Cited by: 32
Author(s): Kirstine Klitgaard, Carsten Friis, Tim Kåre Jensen, Øystein Angen, Mette Boye
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0013450

Chronic Hypoxia Impairs Muscle Function in the Drosophila Model of Duchenne's Muscular Dystrophy (DMD)
Cited by: 17
Author(s): Matías Mosqueira, Gabriel Willmann, Hannele Ruohola‐Baker, Tejvir S. Khurana
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0136820

Reference Gene Selection for qPCR Analysis in Tomato-Bipartite Begomovirus Interaction and Validation in Additional Tomato-Virus Pathosystems
Cited by: 40
Author(s): A. L. M. Lacerda, Leonardo N. Fonseca, Rosana Blawid, L. S. Boiteux, S. G. Ribeiro, Ana Cristina Miranda Brasileiro
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-015-1526-0

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
Cited by: 31
Author(s): Alexander Lichius, Frédérique Bidard, Franziska Buchholz, Stéphane Le Crom, Joel Martin, Wendy Schackwitz, Tina Austerlitz, Igor V. Grigoriev, Scott E. Baker, Antoine Margeot, Bernhard Schink, Christian P. Kubicek
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0108200

Comparative Transcriptome Analysis Reveals the Genetic Basis of Skin Color Variation in Common Carp
Cited by: 72
Author(s): Yanliang Jiang, Songhao Zhang, Jian Xu, Jianxin Feng, Shahid Mahboob, Khalid A. Al‐Ghanim, Xin Sun, Peng Xu
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0063081

Early-Stage Psychotherapy Produces Elevated Frontal White Matter Integrity in Adult Major Depressive Disorder
Cited by: 29
Author(s): Tao Wang, Xiaolan Huang, Peiyu Huang, Dan Li, Fajin Lv, Yong Zhang, Linke Zhou, Deyu Yang, Peng Xie
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0065224

The Enterococcus faecium Enterococcal Biofilm Regulator, EbrB, Regulates the esp Operon and Is Implicated in Biofilm Formation and Intestinal Colonization
Cited by: 28
Author(s): Janetta Top, Fernanda L. Paganelli, Xinglin Zhang, Willem van Schaik, Helen L. Leavis, Miranda van Luit-Asbroek, Tom van der Poll, Masja Leendertse, Marc J. M. Bonten, Rob J. L. Willems
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0228680

Comparative transcriptome provides molecular insight into defense-associated mechanisms against spider mite in resistant and susceptible common bean cultivars
Cited by: 13
Author(s): Abdul Hadi Hoseinzadeh, Aboozar Soorni, Marie Shoorooei, Masoud Torkzadeh Mahani, R Maali Amiri, Hossein Allahyari, Reza Mohammadi
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1002624

A Genome-Wide Screen for Genetic Variants That Modify the Recruitment of REST to Its Target Genes
Cited by: 15
Author(s): Rory Johnson, Nadine Richter, Gireesh K. Bogu, Akshay Bhinge, Siaw Wei Teng, Siew Hua Choo, Lise O. Andrieux, Cinzia De Benedictis, Ralf Jauch, Lawrence W. Stanton
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pgen.1003915

FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus nematophila Bacterial Cells
Cited by: 24
Author(s): Grégory Jubelin, Anne Lanois, Dany Séverac, Stéphanie Rialle, C. F. H. Longin, Sophie Gaudriault, Alain Givaudan
Software Mentions: 2
Published: about 12 years ago

10.3390/life9010004

Metatranscriptomic Analysis of the Bacterial Symbiont Dactylopiibacterium carminicum from the Carmine Cochineal Dactylopius coccus (Hemiptera: Coccoidea: Dactylopiidae)
Cited by: 12
Author(s): Rafael Bustamante-Brito, Arturo Vera‐Ponce de León, Mónica Rosenblueth, Julio Martínez‐Romero, Esperanza Martínez‐Romero
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-15-854

Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Cited by: 33
Author(s): Sinara Artico, Marcelo Ribeiro-Alves, O. B. Oliveira-Neto, Leonardo Lima Pepino Macedo, Sylvia Rodrigues da Silveira, Maria Fátima Grossi‐de‐Sá, Adriana Pinheiro Martinelli, Márcio Alves‐Ferreira
Software Mentions: 2
Published: about 11 years ago

10.3389/fnhum.2018.00322

Mapping the Spatiotemporal Evolution of Emotional Processing: An MEG Study Across Arousal and Valence Dimensions
Cited by: 11
Author(s): Charis Styliadis, Andreas A. Ioannides, Panagiotis D. Bamidis, Christos Papadelis
Software Mentions: 2
Published: over 7 years ago

10.3389/fnhum.2020.574148

Brain Responses to Food Odors Associated With BMI Change at 2-Year Follow-Up
Cited by: 6
Author(s): Pengfei Han, Hong Chen, Thomas Hummel
Software Mentions: 2
Published: about 5 years ago

10.3389/fnhum.2015.00386

GRETNA: a graph theoretical network analysis toolbox for imaging connectomics
Cited by: 544
Author(s): Jinhui Wang, Xindi Wang, Mingrui Xia, Xuhong Liao, Alan C. Evans, Yong He
Software Mentions: 2
Published: over 10 years ago

10.1155/2015/202914

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model
Cited by: 3
Author(s): José Manuel García-Manteiga, Silvia Bonfiglio, Maria Luisa Malosio, Dejan Lazarevic, Elia Stupka, Davide Cittaro, Jacopo Meldolesi
Software Mentions: 2
Published: almost 11 years ago

10.3389/fnhum.2020.585664

Increased Amygdala-Paracentral Lobule/Precuneus Functional Connectivity Associated With Patients With Mood Disorder and Suicidal Behavior
Cited by: 14
Author(s): Ran Zhang, Luheng Zhang, Shengnan Wei, Pengshuo Wang, Xiaowei Jiang, Yanqing Tang, Fei Wang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2020.00630

Human Alveolar and Splenic Macrophage Populations Display a Distinct Transcriptomic Response to Infection With Mycobacterium tuberculosis
Cited by: 9
Author(s): Lelia Lavalett, Héctor Ortega, Luis F. Barrera
Software Mentions: 2
Published: over 5 years ago

10.3390/md17030144

Molecular and Morphological Toxicity of Diatom-Derived Hydroxyacid Mixtures to Sea Urchin Paracentrotus lividus Embryos
Cited by: 7
Author(s): Luisa Albarano, Nadia Ruocco, Adrianna Ianora, Giovanni Libralato, Loredana Manfra, Maria Costantini
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pgen.1003994

Transcription Factor Occupancy Can Mediate Active Turnover of DNA Methylation at Regulatory Regions
Cited by: 201
Author(s): Angelika Feldmann, Robert Ivánek, Rabih Murr, Dimos Gaidatzis, Lukas Burger, Dirk Schübeler
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12864-018-5039-5

Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model
Cited by: 46
Author(s): Lyudmila V. Dergunova, Ivan B. Filippenkov, Vasily V. Stavchansky, Alina E. Denisova, Vadim V. Yuzhakov, С. А. Мозеров, Leonid V. Gubsky, Svetlana A. Limborska
Software Mentions: 2
Published: over 7 years ago

10.3390/plants10040758

The EAR Motif in the Arabidopsis MADS Transcription Factor AGAMOUS-Like 15 Is Not Necessary to Promote Somatic Embryogenesis
Cited by: 6
Author(s): Sanjay Joshi, Christian Keller, Sharyn E. Perry
Software Mentions: 2
Published: over 4 years ago

10.1155/2015/824710

Exploring Dynamic Brain Functional Networks Using Continuous “State-Related” Functional MRI
Cited by: 7
Author(s): Xun Li, Yu‐Feng Zang, Han Zhang
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2407-11-45

Effects of EpCAM overexpression on human breast cancer cell lines
Cited by: 64
Author(s): Johanna M. Gostner, Dominic Fong, Oliver A. Wrulich, Florian Lehne, Marion Zitt, Michael Hermann, Sylvia Krobitsch, Agnieszka Martowicz, Guenther Gastl, Gilbert Spizzo
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2164-11-698

Comparative profiling of the transcriptional response to iron restriction in six serotypes of Actinobacillus pleuropneumoniae with different virulence potential
Cited by: 21
Author(s): Kirstine Klitgaard, Carsten Friis, Øystein Angen, Mette Boye
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13567-017-0430-9

Permissiveness of bovine epithelial cells from lung, intestine, placenta and udder for infection with Coxiella burnetii
Cited by: 19
Author(s): Katharina Sobotta, Katharina Bonkowski, Elisabeth M. Liebler-Tenorio, Pierre Germon, Pascal Rainard, Nina Hambruch, Christiane Pfarrer, Ilse D. Jacobsen, Christian Menge
Software Mentions: 2
Published: over 8 years ago

10.3389/fneur.2020.580408

Aberrant Hippocampal Network Connectivity Is Associated With Neurocognitive Dysfunction in Patients With Moderate and Severe Obstructive Sleep Apnea
Cited by: 19
Author(s): Liqun Zhou, Guiqian Liu, Hong Luo, Huabing Li, Yating Peng, Dandan Zong, Ruoyun Ouyang
Software Mentions: 2
Published: about 5 years ago

10.1002/vms3.430

Marham‐Mafasel decrease joint inflammation and IL‐1β gene expression in rheumatoid arthritis animal model
Cited by: 3
Author(s): Mohammad Majidi, Fatemeh Heidarnejad, Mohsen Naseri, Shahin Bonakdar, Maryam Salimi, Roya Yaraee
Software Mentions: 2
Published: over 4 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: almost 5 years ago

10.3389/fnins.2019.00221

Graph Theoretical Characteristics of EEG-Based Functional Brain Networks in Patients With Epilepsy: The Effect of Reference Choice and Volume Conduction
Cited by: 17
Author(s): Maria Anastasiadou, Manolis Christodoulakis, Eleftherios S. Papathanasiou, Savvas Papacostas, Avgis Hadjipapas, Georgios D. Mitsis
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2019.00705

Influence of EEG References on N170 Component in Human Facial Recognition
Cited by: 5
Author(s): Yi Wang, Hua Huang, Hao Yang, Xie Jian, Site Mo, Hongyu Lai, Ting Wu, Junpeng Zhang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-020-06806-5

Oak displays common local but specific distant gene regulation responses to different mycorrhizal fungi
Cited by: 13
Author(s): Marie-Lara Bouffaud, Sylvie Herrmann, Mika Tarkka, Markus Bönn, Lasse Feldhahn, François Buscot
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2017.00509

A Comparative Study on the Dynamic EEG Center of Mass with Different References
Cited by: 11
Author(s): Yun Qin, Xiuwei Xin, Hao Zhu, Fali Li, Hongchuan Xiong, Tao Zhang, Yongxiu Lai
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0007743

An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum
Cited by: 216
Author(s): Marianne Nymark, Kristin Collier Valle, Tore Brembu, Kasper Hancke, Per Winge, Kjersti Andresen, Geir Johnsen, Atle M. Bones
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0159934

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)
Cited by: 63
Author(s): Mónica B. Betancor, Matthew Sprague, Olga Sayanova, Sarah Usher, Christoforos Metochis, Patrick Campbell, Johnathan A. Napier, Douglas R. Tocher
Software Mentions: 2
Published: over 9 years ago

10.1016/j.scs.2020.102315

REST framework: A modelling approach towards cooling energy stress mitigation plans for future cities in warming Global South
Cited by: 9
Author(s): Ronita Bardhan, Ramit Debnath, João Gama, Upadhi Vijay
Software Mentions: 2
Published: about 5 years ago

10.3390/s16091360

A Participatory Agent-Based Simulation for Indoor Evacuation Supported by Google Glass
Cited by: 11
Author(s): Jesús M. Sánchez, Álvaro Carrera, Carlos Á. Iglesias, Emilio Serrano
Software Mentions: 2
Published: over 9 years ago

10.3390/s16122142

Evaluation of Google Glass Technical Limitations on Their Integration in Medical Systems
Cited by: 19
Author(s): Antonio Martínez-Millana, Jose-Luis Bayo-Monton, Aroa Lizondo, Carlos Fernández-Llatas
Software Mentions: 2
Published: about 9 years ago

10.3390/s17020332

A Web of Things-Based Emerging Sensor Network Architecture for Smart Control Systems
Cited by: 35
Author(s): Murad Khan, Bhagya Nathali Silva, Kijun Han
Software Mentions: 2
Published: almost 9 years ago

10.3390/s18020537

An IoT-Based Gamified Approach for Reducing Occupants’ Energy Wastage in Public Buildings
Cited by: 26
Author(s): Thanasis G. Papaioannou, Nikos Dimitriou, Kostas Vasilakis, Anthony Schoofs, Manolis Nikiforakis, Fabian Pursche, Nikolay Deliyski, Amr Taha, Dimosthenis Kotsopoulos, Cleopatra Bardaki, Sarantis Kotsilitis, Anastasia Garbi
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41398-019-0590-7

Precocious myelination in a mouse model of autism
Cited by: 20
Author(s): Maryam Khanbabaei, Elizabeth D. Hughes, Jacob Ellegood, Lily R. Qiu, Raven Yip, Jenna Dobry, Kartikeya Murari, Jason P. Lerch, Jong M. Rho, Ning Cheng
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-65822-3

Baseline and Disease-Induced Transcriptional Profiles in Children with Sickle Cell Disease
Cited by: 3
Author(s): Susan E Creary, Chandra L. Shrestha, Kavitha Kotha, Abena Minta, James Fitch, Lisa Jaramillo, Shuzhong Zhang, Swaroop Pinto, Rohan Thompson, Octavio Ramilo, Peter White, M. Asuncion Mejias, Benjamin T. Kopp
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81040-x

Nerve Growth Factor (NGF) modulates in vitro induced myofibroblasts by highlighting a differential protein signature
Cited by: 3
Author(s): Graziana Esposito, Bijorn Omar Balzamino, Egidio Stigliano, Filippo Biamonte, Andrea Urbani, Alessandra Micera
Software Mentions: 2
Published: almost 5 years ago

10.3390/s18092994

Urban Planning and Smart City Decision Management Empowered by Real-Time Data Processing Using Big Data Analytics
Cited by: 78
Author(s): Bhagya Nathali Silva, Murad Khan, Changsu Jung, Jihun Seo, Muhammad Diyan, Jing Han, Yongtak Yoon, Kijun Han
Software Mentions: 2
Published: over 7 years ago

10.3390/s19010006

EEG-Based Identity Authentication Framework Using Face Rapid Serial Visual Presentation with Optimized Channels
Cited by: 23
Author(s): Ying Zeng, Qunjian Wu, Kai Yang, Tong Li, Bin Yan, Jun Shu, Dezhong Yao
Software Mentions: 2
Published: almost 7 years ago

10.3390/s19010100

Architecture to Embed Software Agents in Resource Constrained Internet of Things Devices
Cited by: 11
Author(s): Daniel Hernández de la Iglesia, Gabriel Villarrubia González, André Sales Mendes, Diego M. Jiménez-Bravo, Alberto López Barriuso
Software Mentions: 2
Published: almost 7 years ago

10.1186/1751-0473-9-19

EC2KEGG: a command line tool for comparison of metabolic pathways
Cited by: 15
Author(s): Aleksey Porollo
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-018-33928-4

Diet induced obesity is independent of metabolic endotoxemia and TLR4 signalling, but markedly increases hypothalamic expression of the acute phase protein, SerpinA3N
Cited by: 50
Author(s): Matthew J. Dalby, Gabriella Aviello, Alexander Ross, Alan W. Walker, Perry Barrett, Peter J. Morgan
Software Mentions: 2
Published: about 7 years ago

10.3390/s19143076

CATSWoTS: Context Aware Trustworthy Social Web of Things System
Cited by: 11
Author(s): Sabeen Javaid, Hammad Afzal, Fahim Arif, Naima Iltaf, Haider Abbas, Waseem Iqbal
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-34960-0

Chemically modified hCFTR mRNAs recuperate lung function in a mouse model of cystic fibrosis
Cited by: 60
Author(s): Akm Ashiqul Haque, Alexander Dewerth, Justin S. Antony, Joachim Riethmüller, G. Schweizer, Petra Weinmann, Ngadhnjim Latifi, Hanzey Yasar, Nicoletta Pedemonte, Elvira Sondo, Brian Weidensee, Anjali Ralhan, Julie Laval, Patrick Schlegel, Christian Seitz, Brigitta Loretz, Claus‐Michael Lehr, Rupert Handgretinger, Michael Kormann
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-67391-x

Evolutionary-driven C-MYC gene expression in mammalian fibroblasts
Cited by: 4
Author(s): Marcelo Tigre Moura, Roberta L. O. Silva, Ludymila Furtado Cantanhêde, José Carlos Ferreira-Silva, Pábola Santos Nascimento, Ana Maria Benko‐Iseppon, Marcos Antônio Lemos Oliveira
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-54989-z

Species-specific transcriptional profiles of the gut and gut microbiome of Ceratitis quilicii and Ceratitis rosa sensu stricto
Cited by: 1
Author(s): Fathiya M. Khamis, Paul O. Mireji, Fidelis L. O. Ombura, Anna R. Malacrida, Erick O. Awuoche, Martin K. Rono, Samira A. Mohamed, Chrysantus M. Tanga, Sunday Ekesi
Software Mentions: 2
Published: about 6 years ago

10.3390/s20133770

A WoT Platform for Supporting Full-Cycle IoT Solutions from Edge to Cloud Infrastructures: A Practical Case
Cited by: 7
Author(s): Rafael Vargas, Llanos Tobarra, Antonio Robles-Gómez, Sergio Martín, Roberto Hernández, Jesús Cano
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-37546-y

Toxicity of diatom-derived polyunsaturated aldehyde mixtures on sea urchin Paracentrotus lividus development
Cited by: 6
Author(s): Nadia Ruocco, Concetta Annunziata, Adrianna Ianora, Giovanni Libralato, Loredana Manfra, Susan Costantini, Maria Costantini
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-32795-3

Dysregulation of the endothelin pathway in lymphangioleiomyomatosis with no direct effect on cell proliferation and migration
Cited by: 3
Author(s): Nader Chebib, Fabienne Archer, Alexandra Bobet-Erny, Caroline Leroux, Vincent Cottin
Software Mentions: 2
Published: about 7 years ago

10.3390/s20195480

An Artificial Intelligence-Based Collaboration Approach in Industrial IoT Manufacturing: Key Concepts, Architectural Extensions and Potential Applications
Cited by: 50
Author(s): Panagiotis Trakadas, Pieter Simoens, Panagiotis K. Gkonis, Lambros Sarakis, A. Angelopoulos, Alfonso P. Ramallo-González, Antonio Skármeta, Christos Trochoutsos, Daniel Calvο, Tomás Pariente, Keshav Chintamani, Izaskun Fernández, Aitor Arnáiz, Josiane Xavier Parreira, Pierluigi Petrali, Helen C. Leligou, Panagiotis Karkazis
Software Mentions: 2
Published: about 5 years ago

10.3390/s21072433

A Comparative Analysis of Honeypots on Different Cloud Platforms
Cited by: 11
Author(s): Carmel Kelly, Nikolaos Pitropakis, Alexios Mylonas, Sean McKeown, William J. Buchanan
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-30893-w

RNAm expression profile of cancer marker genes in HepG2 cells treated with different concentrations of a new indolin-3-one from Pseudomonas aeruginosa
Cited by: 4
Author(s): Lucas Milanez Benício, Ane Stéfano Simionato, Cláudio Roberto Novello, Jeconias Rocha Guimarães, Ingrid Felicidade, Admilton Gonçalves de Oliveira, João Carlos Palazzo de Mello, Mário Mantovani, Andréas Lazaros Chryssafidis, Galdino Andrade, Ilce Mara de Syllos Cólus, Marcelo Tempesta de Oliveira
Software Mentions: 2
Published: over 7 years ago

Projects: cran: REST

Science Score: 75/100

Penalties:

Papers Mentioning REST 1,757