cran: REST | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1002624

A Genome-Wide Screen for Genetic Variants That Modify the Recruitment of REST to Its Target Genes
Cited by: 15
Author(s): Rory Johnson, Nadine Richter, Gireesh K. Bogu, Akshay Bhinge, Siaw Wei Teng, Siew Hua Choo, Lise O. Andrieux, Cinzia De Benedictis, Ralf Jauch, Lawrence W. Stanton
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pgen.1003915

FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus nematophila Bacterial Cells
Cited by: 24
Author(s): Grégory Jubelin, Anne Lanois, Dany Séverac, Stéphanie Rialle, C. F. H. Longin, Sophie Gaudriault, Alain Givaudan
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-15-854

Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Cited by: 33
Author(s): Sinara Artico, Marcelo Ribeiro-Alves, O. B. Oliveira-Neto, Leonardo Lima Pepino Macedo, Sylvia Rodrigues da Silveira, Maria Fátima Grossi‐de‐Sá, Adriana Pinheiro Martinelli, Márcio Alves‐Ferreira
Software Mentions: 2
Published: over 11 years ago

10.1155/2015/202914

Epigenomics of Neural Cells: REST-Induced Down- and Upregulation of Gene Expression in a Two-Clone PC12 Cell Model
Cited by: 3
Author(s): José Manuel García-Manteiga, Silvia Bonfiglio, Maria Luisa Malosio, Dejan Lazarevic, Elia Stupka, Davide Cittaro, Jacopo Meldolesi
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1003994

Transcription Factor Occupancy Can Mediate Active Turnover of DNA Methylation at Regulatory Regions
Cited by: 201
Author(s): Angelika Feldmann, Robert Ivánek, Rabih Murr, Dimos Gaidatzis, Lukas Burger, Dirk Schübeler
Software Mentions: 2
Published: over 12 years ago

10.3390/plants10040758

The EAR Motif in the Arabidopsis MADS Transcription Factor AGAMOUS-Like 15 Is Not Necessary to Promote Somatic Embryogenesis
Cited by: 6
Author(s): Sanjay Joshi, Christian Keller, Sharyn E. Perry
Software Mentions: 2
Published: about 5 years ago

10.1155/2015/824710

Exploring Dynamic Brain Functional Networks Using Continuous “State-Related” Functional MRI
Cited by: 7
Author(s): Xun Li, Yu‐Feng Zang, Han Zhang
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2407-11-45

Effects of EpCAM overexpression on human breast cancer cell lines
Cited by: 64
Author(s): Johanna M. Gostner, Dominic Fong, Oliver A. Wrulich, Florian Lehne, Marion Zitt, Michael Hermann, Sylvia Krobitsch, Agnieszka Martowicz, Guenther Gastl, Gilbert Spizzo
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2164-11-698

Comparative profiling of the transcriptional response to iron restriction in six serotypes of Actinobacillus pleuropneumoniae with different virulence potential
Cited by: 21
Author(s): Kirstine Klitgaard, Carsten Friis, Øystein Angen, Mette Boye
Software Mentions: 2
Published: over 16 years ago

10.1186/s13567-017-0430-9

Permissiveness of bovine epithelial cells from lung, intestine, placenta and udder for infection with Coxiella burnetii
Cited by: 19
Author(s): Katharina Sobotta, Katharina Bonkowski, Elisabeth M. Liebler-Tenorio, Pierre Germon, Pascal Rainard, Nina Hambruch, Christiane Pfarrer, Ilse D. Jacobsen, Christian Menge
Software Mentions: 2
Published: about 9 years ago

10.1002/vms3.430

Marham‐Mafasel decrease joint inflammation and IL‐1β gene expression in rheumatoid arthritis animal model
Cited by: 3
Author(s): Mohammad Majidi, Fatemeh Heidarnejad, Mohsen Naseri, Shahin Bonakdar, Maryam Salimi, Roya Yaraee
Software Mentions: 2
Published: about 5 years ago

10.1080/21505594.2021.1878743

The transcription factor Ndt80 is a repressor of Candida parapsilosis virulence attributes
Cited by: 5
Author(s): Joana Branco, Cláudia Martins-Cruz, Lisa Rodrigues, Raquel M. Silva, Nuno Araújo‐Gomes, Teresa Gonçalves, Isabel M. Miranda, Acácio G. Rodrigues
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0007743

An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum
Cited by: 216
Author(s): Marianne Nymark, Kristin Collier Valle, Tore Brembu, Kasper Hancke, Per Winge, Kjersti Andresen, Geir Johnsen, Atle M. Bones
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0159934

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)
Cited by: 63
Author(s): Mónica B. Betancor, Matthew Sprague, Olga Sayanova, Sarah Usher, Christoforos Metochis, Patrick Campbell, Johnathan A. Napier, Douglas R. Tocher
Software Mentions: 2
Published: almost 10 years ago

10.3389/fphar.2018.00613

Extending in Silico Protein Target Prediction Models to Include Functional Effects
Cited by: 4
Author(s): Lewis Mervin, Avid M. Afzal, Lars Brive, Ola Engkvist, Andreas Bender
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-015-1526-0

Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
Cited by: 31
Author(s): Alexander Lichius, Frédérique Bidard, Franziska Buchholz, Stéphane Le Crom, Joel Martin, Wendy Schackwitz, Tina Austerlitz, Igor V. Grigoriev, Scott E. Baker, Antoine Margeot, Bernhard Schink, Christian P. Kubicek
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0136820

Reference Gene Selection for qPCR Analysis in Tomato-Bipartite Begomovirus Interaction and Validation in Additional Tomato-Virus Pathosystems
Cited by: 40
Author(s): A. L. M. Lacerda, Leonardo N. Fonseca, Rosana Blawid, L. S. Boiteux, S. G. Ribeiro, Ana Cristina Miranda Brasileiro
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0178460

Assessing the impact of Benzo[a]pyrene on Marine Mussels: Application of a novel targeted low density microarray complementing classical biomarker responses
Cited by: 53
Author(s): Mohamed Bannı, Susanna Sforzini, Volker M. Arlt, Audrey Barranger, Lorna J. Dallas, Caterina Oliveri, Yann Aminot, Beniamina Pacchioni, Caterina Millino, Gerolamo Lanfranchi, James W. Readman, Michael N. Moore, Aldo Viarengo, Awadhesh N. Jha
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms12128581

Effects of Conjugated Linoleic Acid, Fish Oil and Soybean Oil on PPARs (α & γ) mRNA Expression in Broiler Chickens and Their Relation to Body Fat Deposits
Cited by: 28
Author(s): Maryam Royan, Yong Meng Goh, Fauziah Othman, Awis Qurni Sazili, Bahman Navidshad
Software Mentions: 2
Published: over 14 years ago

10.3389/fimmu.2020.00630

Human Alveolar and Splenic Macrophage Populations Display a Distinct Transcriptomic Response to Infection With Mycobacterium tuberculosis
Cited by: 9
Author(s): Lelia Lavalett, Héctor Ortega, Luis F. Barrera
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2021.634497

In vitro Evaluation of Programmed Cell Death in the Immune System of Pacific Oyster Crassostrea gigas by the Effect of Marine Toxins
Cited by: 9
Author(s): Norma Estrada, Erick J. Núñez-Vázquez, Alejandra Palacios, Felipe Ascencio, Laura T. Guzmán-Villanueva, Rubén G. Contreras
Software Mentions: 2
Published: about 5 years ago

10.1002/hbm.25305

Predicting visual working memory with multimodal magnetic resonance imaging
Cited by: 11
Author(s): Xiaomei Yu, Ying Lin, Junji Ma, Jiehui Qian, Zijun Ke, Liangfang Li, Yangyang Yi, Jinbo Zhang, Cam‐CAN, Zhengjia Dai
Software Mentions: 2
Published: over 5 years ago

10.1002/hbm.24384

Focal application of accelerated iTBS results in global changes in graph measures
Cited by: 6
Author(s): Debby Klooster, Suzanne L. Franklin, René M.H. Besseling, Jaap F.A. Jansen, Karen Caeyenberghs, Romain Duprat, Albert P. Aldenkamp, A.J.A. de Louw, Paul Boon, Chris Baeken
Software Mentions: 2
Published: over 7 years ago

10.1002/hbm.25429

Taking the body off the mind: Decreased functional connectivity between somatomotor and default‐mode networks following Floatation‐REST
Cited by: 12
Author(s): Obada Al Zoubi, Masaya Misaki, Jerzy Bodurka, Rayus Kuplicki, Colleen Wohlrab, William A. Schoenhals, Hazem H. Refai, Sahib S. Khalsa, Murray B. Stein, Martin P. Paulus, Justin S. Feinstein
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0028254

Filaggrin Genotype Determines Functional and Molecular Alterations in Skin of Patients with Atopic Dermatitis and Ichthyosis Vulgaris
Cited by: 60
Author(s): M Winge, Torborg Hoppe, Berit Berne, Anders Vahlquist, Magnus Nordenskjöld, J. F. N. Bradley, Hans Törmä
Software Mentions: 2
Published: over 14 years ago

10.1038/srep37617

Structural and Functional Connectivity of Default Mode Network underlying the Cognitive Impairment in Late-onset Depression
Cited by: 32
Author(s): Yingying Yin, Xiaofu He, Mingze Xu, Zhenghua Hou, Xiaopeng Song, Yuxiu Sui, Zhi Li, Wenhao Jiang, Yingying Yue, Yuqun Zhang, Yijun Liu, Yonggui Yuan
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms20040806

Unravelling the Complexity of Plant Defense Induced by a Simultaneous and Sequential Mite and Aphid Infestation
Cited by: 6
Author(s): Małgorzata Kiełkiewicz, Anna Barczak-Brzyżek, Barbara Karpińska, Marcin Filipecki
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2014.00479

Pervasive effects of a dominant foliar endophytic fungus on host genetic and phenotypic expression in a tropical tree
Cited by: 72
Author(s): Luis C. Mejía, Edward Allen Herre, Jed P. Sparks, Klaus Winter, M. García, Sunshine A. Van Bael, Joseph P. Stitt, Zi Shi, Yufan Zhang, Mark J. Guiltinan, Siela N. Maximova
Software Mentions: 2
Published: over 11 years ago

10.1038/srep39049

Interactomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation
Cited by: 17
Author(s): Namgyu Lee, Sung Jin Park, Ghazal Haddad, Dae-Kyum Kim, Seon‐Min Park, Sang Ki Park, Kwan Yong Choi
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms20184389

Effect of Tff3 Deficiency and ER Stress in the Liver
Cited by: 5
Author(s): Kate Šešelja, Iva Bazina, Jessica Welss, Martin Schicht, Friedrich Paulsen, Nikola Bijelić, Edi Rođak, Anita Horvatić, Andrea Gelemanović, Martina Mihalj, Mirela Baus Lončar
Software Mentions: 2
Published: over 6 years ago

10.3389/fnbot.2017.00002

Connecting Artificial Brains to Robots in a Comprehensive Simulation Framework: The Neurorobotics Platform
Cited by: 86
Author(s): Egidio Falotico, Lorenzo Vannucci, Alessandro Ambrosano, Ugo Albanese, Stefan Ulbrich, J. Camilo Vasquez Tieck, Georg Hinkel, Jacques Kaiser, Igor Peric, Oliver Denninger, Nino Cauli, Murat Kırtay, Arne Roennau, Gudrun Klinker, Axel von Arnim, Luc Guyot, Daniel Peppicelli, Pablo Martínez‐Cañada, Eduardo Ros, Patrick Maier, Sandro Weber, Manuel Huber, David A. Plecher, Florian Röhrbein, Stefan Deser, Alina Roitberg, Patrick van der Smagt, R. Dillman, Paul Levi, Cecilia Laschi, Alois Knoll, Marc‐Oliver Gewaltig
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42278

Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents
Cited by: 20
Author(s): Irene Olivé, João Silva, Chiara Lauritano, Monya M. Costa, Miriam Ruocco, Gabriele Procaccini, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42890

Depth-specific fluctuations of gene expression and protein abundance modulate the photophysiology in the seagrass Posidonia oceanica
Cited by: 47
Author(s): Gabriele Procaccini, Miriam Ruocco, Lázaro Marín-Guirao, Emanuela Dattolo, Christophe Brunet, Daniela D’Esposito, Chiara Lauritano, Silvia Mazzuca, Ilia Anna Serra, Letizia Bernardo, Amalia Piro, Sven Beer, Mats Björk, Martin Gullström, Pimchanok Buapet, Lina M. Rasmusson, Paulo Felisberto, Sylvie Gobert, John W. Runcie, João Silva, Irene Olivé, Monya M. Costa, Isabel Barrote, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0162828

The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia
Cited by: 6
Author(s): Satoshi Mizuno, Soichi Ogishima, Hidekazu Nishigori, Daniel Jamieson, Karin Verspoor, Hiroshi Tanaka, Nobuo Yaegashi, Jun Nakaya
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms20246139

Insights into Barley Root Transcriptome under Mild Drought Stress with an Emphasis on Gene Expression Regulatory Mechanisms
Cited by: 22
Author(s): Agnieszka Janiak, Mirosław Kwaśniewski, Marta Sowa, Anetta Kuczyńska, Krzysztof Mikołajczak, Piotr Ogrodowicz, Iwona Szarejko
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21030719

Combined Effects of Diatom-Derived Oxylipins on the Sea Urchin Paracentrotus lividus
Cited by: 8
Author(s): Roberta Esposito, Nadia Ruocco, Luisa Albarano, Adrianna Ianora, Loredana Manfra, Giovanni Libralato, Maria Costantini
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2018.00827

TPH-2 Gene Polymorphism in Major Depressive Disorder Patients With Early-Wakening Symptom
Cited by: 16
Author(s): Shiwan Tao, Mohammad Ridwan Chattun, Rui Yan, Jiting Geng, Rong Zhu, Junneng Shao, Qing Lü, Zhijian Yao
Software Mentions: 2
Published: over 7 years ago

10.22074/cellj.2020.6582

Cardiac Differentiation of Adipose Tissue-Derived Stem Cells Is Driven by BMP4 and bFGF but Counteracted by 5-Azacytidine and Valproic Acid.
Cited by: 3
Author(s): Sanaz Hasani, Arash Javeri, Asadollah Asadi, Masoumeh Fakhr Taha
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00268

The Small RNA RyhB Is a Regulator of Cytochrome Expression in Shewanella oneidensis
Cited by: 9
Author(s): Karin L. Meibom, Elena M. Cabello, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: over 8 years ago

10.1111/joa.12977

Altered haemodynamics causes aberrations in the epicardium
Cited by: 4
Author(s): Chrysostomos Perdios, Matthew Parnall, Kar Lai Pang, Siobhan Loughna
Software Mentions: 2
Published: about 7 years ago

10.1093/texcom/tgab035

Behavioral and Neural Signatures of Visual Imagery Vividness Extremes: Aphantasia versus Hyperphantasia
Cited by: 46
Author(s): Fraser Milton, Jon Fulford, Carla Dance, James Gaddum, Brittany Heuerman-Williamson, Kealan Jones, Kathryn F Knight, Matthew MacKisack, Crawford Winlove, Adam Zeman
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0036986

Connectivity of Default-Mode Network Is Associated with Cerebral Edema in Hepatic Encephalopathy
Cited by: 26
Author(s): Wei Che Lin, Tun-Wei Hsu, Chao Long Chen, Changwei W. Wu, Cheng Hsien Lu, Hsiu-Ling Chen, Shau Hsuan Li, Pin Yang Yeh, Yu Cheng, Ching Po Lin
Software Mentions: 2
Published: about 14 years ago

10.3390/ijms21239124

Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane
Cited by: 23
Author(s): Augusto Lima Diniz, Danielle Izilda Rodrigues da Silva, Carolina Gimiliani Lembke, Maximiller Dal-Bianco, Felipe Ten Caten, Forrest Li, Romel Duarte Vilela, Marcelo Menossi, Doreen Ware, Laurício Endres, Gláucia Mendes Souza
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22010026

Disclosing the Interaction of Gold Nanoparticles with Aβ(1–40) Monomers through Replica Exchange Molecular Dynamics Simulations
Cited by: 15
Author(s): Francesco Tavanti, Alfonso Pedone, Maria Cristina Menziani
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0077914

Regional Brain Atrophy and Functional Connectivity Changes Related to Fatigue in Multiple Sclerosis
Cited by: 63
Author(s): Álvaro Javier Cruz-Gómez, Noelia Ventura‐Campos, Antonio Belenguer, César Ávila, Cristina Forn
Software Mentions: 2
Published: over 12 years ago

10.3390/ijms22084263

Targeting of Deregulated Wnt/β-Catenin Signaling by PRI-724 and LGK974 Inhibitors in Germ Cell Tumor Cell Lines
Cited by: 9
Author(s): Silvia Schmidtova, Katarína Kalavska, Veronika Lišková, Jana Plavá, Svetlana Miklikova, Lucia Kučerová, Miroslava Matúšková, Lucia Rojikova, Zuzana Čierna, Adriana L. Rogozea, Heiko König, Costantine Albany, Michal Mego, Michal Chovanec
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-07236-2

Integration of miRNA and mRNA expression profiles reveals microRNA-regulated networks during muscle wasting in cardiac cachexia
Cited by: 37
Author(s): Leonardo Nazário de Moraes, Geysson Javier Fernández, Ivan J. Vechetti, Paula Paccielli Freire, Rodrigo Wagner Alves de Souza, Rolando A R Villacis, Sílvia Regina Rogatto, Patrícia P. Reis, Maeli Dal-Pai-Silva, Robson Francisco Carvalho
Software Mentions: 2
Published: almost 9 years ago

10.3389/fnins.2018.00297

Unified Bayesian Estimator of EEG Reference at Infinity: rREST (Regularized Reference Electrode Standardization Technique)
Cited by: 21
Author(s): Shiang Hu, Dezhong Yao, Pedro A. Valdés‐Sosa
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-017-12092-1

De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential
Cited by: 51
Author(s): Chiara Lauritano, Danièle De Luca, Alberto Ferrarini, C. Avanzato, Andrea Minio, Francesco Esposito, Adrianna Ianora
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-14075-8

Nutrient Loading Fosters Seagrass Productivity Under Ocean Acidification
Cited by: 27
Author(s): Chiara Ravaglioli, Chiara Lauritano, María Cristina Buia, Elena Balestri, Antonella Capocchi, Debora Fontanini, G. Pardi, Laura Tamburello, Gabriele Procaccini, Fabio Bulleri
Software Mentions: 2
Published: over 8 years ago

10.3389/fnins.2018.00250

The Scalp Time-Varying Networks of N170: Reference, Latency, and Information Flow
Cited by: 15
Author(s): Yin Tian, Wei Xu, Huiling Zhang, Kin Yip Tam, Haiyong Zhang, Li Yang, Zhangyong Li, Yu Pang
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms22169077

Cappable-Seq Reveals Specific Patterns of Metabolism and Virulence for Salmonella Typhimurium Intracellular Survival within Acanthamoeba castellanii
Cited by: 1
Author(s): Alexander S. Balkin, А. О. Плотников, Natalia Gogoleva, Alexander A. Kamnev, Kirill N. Demchenko, С. В. Черкасов
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms221810054

Antistress Action of Melanocortin Derivatives Associated with Correction of Gene Expression Patterns in the Hippocampus of Male Rats Following Acute Stress
Cited by: 8
Author(s): Ivan B. Filippenkov, Vasily V. Stavchansky, N. Yu. Glazova, Е. А. Себенцова, Julia A. Remizova, Liya V Valieva, N. G. Levitskaya, N. F. Myasoedov, Svetlana A. Limborska, Lyudmila V. Dergunova
Software Mentions: 2
Published: over 4 years ago

10.1039/c8cs00040a

Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments
Cited by: 109
Author(s): Pim W. J. M. Frederix, Ilias Patmanidis, Siewert J. Marrink
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-24023-9

Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis
Cited by: 25
Author(s): Nadia Ruocco, Susan Costantini, Valerio Zupo, Chiara Lauritano, Davide Caramiello, Adrianna Ianora, Alfredo Budillon, Giovanna Romano, Genoveffa Nuzzo, Giuliana d’Ippolito, Angelo Fontana, Maria Costantini
Software Mentions: 2
Published: about 8 years ago

10.1088/1741-2560/12/5/056012

Estimating a neutral reference for electroencephalographic recordings: the importance of using a high-density montage and a realistic head model
Cited by: 83
Author(s): Quanying Liu, Joshua H. Balsters, Marc Baechinger, Onno van der Groen, Nicole Wenderoth, Dante Mantini
Software Mentions: 2
Published: almost 11 years ago

10.3389/fnins.2019.01341

Editorial: Through a Glass, Darkly: The Influence of the EEG Reference on Inference About Brain Function and Disorders
Cited by: 5
Author(s): María Luisa Bringas Vega, Paul L. Nunez, Jorge J. Riera, Rui Zhang, Pedro A. Valdés‐Sosa
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-020-01497-w

Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants
Cited by: 7
Author(s): Xinyi Jiang, Nefeli Dellepiane, Erola Pairo-Castineira, Thibaud Boutin, Yatendra Kumar, Wendy A. Bickmore, Véronique Vitart
Software Mentions: 2
Published: over 5 years ago

10.1186/1758-2946-2-5

Towards interoperable and reproducible QSAR analyses: Exchange of datasets
Cited by: 39
Author(s): Ola Spjuth, Egon Willighagen, Rajarshi Guha, Martin Eklund, Jarl E. S. Wikberg
Software Mentions: 2
Published: almost 16 years ago

10.1523/JNEUROSCI.2578-20.2021

Interoception Primes Emotional Processing: Multimodal Evidence from Neurodegeneration
Cited by: 47
Author(s): Paula Salamone, Agustina Legaz, Lucas Sedeño, Sebastián Moguilner, Matias E Fraile-Vazquez, Cecilia González Campo, Sol Fittipaldi, Adrián Yoris, Magdalena Miranda, Agustina Birba, Agostina Galiani, Sofía Abrevaya, A.B. Neely, Miguel Martorell, Florencia Alifano, Roque Villagra, Florencia Anunziata, Maira Okada de Oliveira, Ricardo Marcos Pautassi, Andrea Slachevsky, Cecília Serrano, Adolfo M. García, Agustín Ibáñez
Software Mentions: 2
Published: about 5 years ago

10.3389/fnins.2017.00205

Understanding the Influences of EEG Reference: A Large-Scale Brain Network Perspective
Cited by: 62
Author(s): Xu Lei, Keren Liao
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0040266

Functional Feeds Reduce Heart Inflammation and Pathology in Atlantic Salmon (Salmo salar L.) following Experimental Challenge with Atlantic Salmon Reovirus (ASRV)
Cited by: 55
Author(s): Laura Martínez-Rubio, Sofía Morais, Øystein Evensen, Simón Wadsworth, Kari Ruohonen, Jose L. González Vecino, J.G. Bell, Douglas R. Tocher
Software Mentions: 2
Published: over 13 years ago

10.3389/fnins.2019.00221

Graph Theoretical Characteristics of EEG-Based Functional Brain Networks in Patients With Epilepsy: The Effect of Reference Choice and Volume Conduction
Cited by: 17
Author(s): Maria Anastasiadou, Manolis Christodoulakis, Eleftherios S. Papathanasiou, Savvas Papacostas, Avgis Hadjipapas, Georgios D. Mitsis
Software Mentions: 2
Published: about 7 years ago

10.1038/s42003-019-0342-5

Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity
Cited by: 13
Author(s): Yuanyuan Cheng, Mariano Makara, Emma Peel, Samantha Fox, Anthony T. Papenfuss, Katherine Belov
Software Mentions: 2
Published: about 7 years ago

10.1128/mSystems.00124-16

Direct Heme Uptake by Phytoplankton-Associated Roseobacter Bacteria
Cited by: 23
Author(s): Shane L. Hogle, Bianca Brahamsha, Katherine A. Barbeau
Software Mentions: 2
Published: over 9 years ago

10.1038/ismej.2013.223

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
Cited by: 147
Author(s): Clarissa Schwab, David Berry, Isabella Rauch, Ina Maria Rennisch, Julia Ramesmayer, Eva Hainzl, Susanne Heider, Thomas Decker, Lukas Kenner, Mathias Müller, Birgit Strobl, Michael Wagner, Christa Schleper, Alexander Loy, Tim Urich
Software Mentions: 2
Published: over 12 years ago

10.1093/jxb/erv285

TheIDA/IDA-LIKEandPIP/PIP-LIKEgene families inArabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide
Cited by: 64
Author(s): Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert P. Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu
Software Mentions: 2
Published: almost 11 years ago

10.3389/fnins.2019.00705

Influence of EEG References on N170 Component in Human Facial Recognition
Cited by: 5
Author(s): Yi Wang, Hua Huang, Hao Yang, Xie Jian, Site Mo, Hongyu Lai, Ting Wu, Junpeng Zhang
Software Mentions: 2
Published: almost 7 years ago

10.3390/jof7060414

Osmolyte Signatures for the Protection of Aspergillus sydowii Cells under Halophilic Conditions and Osmotic Shock
Cited by: 6
Author(s): Eya Caridad Rodríguez-Pupo, Yordanis Pérez-Llano, José Raunel Tinoco-Valencia, Norma Silvia Sánchez, Francisco Padilla-Garfias, Martha Calahorra, Nilda del C. Sánchez, Ayixón Sánchez-Reyes, María Del Rocío Rodríguez-Hernández, Antonio Peña, Óscar José Mesa Sánchez, Jesús Aguirre, Ramón Alberto Batista-García, Jorge Luis Folch-Mallol, María del Rayo Sánchez-Carbente
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/erw039

Prioritizing quantitative trait loci for root system architecture in tetraploid wheat
Cited by: 151
Author(s): Marco Maccaferri, Walid M. El-Feki, Ghasemali Nazemi, Silvio Salvi, Maria Angela Canè, Maria Chiara Colalongo, Sandra Stefanelli, Roberto Tuberosa
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/erv516

Kresoxim-methyl primesMedicago truncatulaplants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment
Cited by: 28
Author(s): Panagiota Filippou, Chrystalla Antoniou, Toshihiro Obata, Katrien Van Der Kelen, Vaggelis Harokopos, Loukas Kanetis, Vassilis Aidinis, Frank Van Breusegem, Alisdair R. Fernie, Vasileios Fotopoulos
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/erx168

The IDA-LIKE peptides IDL6 and IDL7 are negative modulators of stress responses in Arabidopsis thaliana
Cited by: 28
Author(s): Ane Kjersti Vie, Javad Najafi, Per Winge, Ester Cattan, Michael Wrzaczek, Jaakko Kangasjärvi, Gad Miller, Tore Brembu, Atle M. Bones
Software Mentions: 2
Published: almost 9 years ago

10.3389/fnins.2017.00247

A Comparative Study of Average, Linked Mastoid, and REST References for ERP Components Acquired during fMRI
Cited by: 13
Author(s): Pei Yang, Chongyi Fan, Min Wang, Ling Li
Software Mentions: 2
Published: about 9 years ago

10.3389/fmolb.2021.633130

Mutations of N1 Riboswitch Affect its Dynamics and Recognition by Neomycin Through Conformational Selection
Cited by: 8
Author(s): Piotr Chyży, Marta Kulik, Suyong Re, Yuji Sugita, Joanna Trylska
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/9520642

DREB Genes from Common Bean (Phaseolus vulgaris L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: about 7 years ago

10.1002/gps.4342

Resting state in Parkinson's disease dementia and dementia with Lewy bodies: commonalities and differences
Cited by: 40
Author(s): Luis R. Peraza, Sean J. Colloby, Michael Firbank, G. Shirmin Greasy, Ian G. McKeith, Marcus Kaiser, John T. O′Brien, John‐Paul Taylor
Software Mentions: 2
Published: almost 11 years ago

10.1155/2021/5565824

Decoding of Motor Coordination Imagery Involving the Lower Limbs by the EEG-Based Brain Network
Cited by: 2
Author(s): Yunfa Fu, Zhouzhou Zhou, Anmin Gong, Qian Qian, Lei Su, Zhixin Lei
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0162237

RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease
Cited by: 43
Author(s): Patrícia Dayane Carvalho Schaker, Aristides Palhares, Lucas Mitsuo Taniguti, Leila Priscila Peters, Silvana Creste, Karen S. Aitken, Marie‐Anne Van Sluys, João Paulo Kitajima, Maria Lúcia Carneiro Vieira, Cláudia Barros Monteiro-Vitorello
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.ppat.1009481

TcpC inhibits toll-like receptor signaling pathway by serving as an E3 ubiquitin ligase that promotes degradation of myeloid differentiation factor 88
Cited by: 6
Author(s): Jiaqi Fang, Qian Ou, Jun Pan, Dayong Zhang, Miao-Qi Qiu, Yue-Qi Li, Xiaohui Wang, Xue-Yu Yang, Zhe Chi, Wei Gao, Jing Guo, Thomas Miethke, Jianping Pan
Software Mentions: 2
Published: about 5 years ago

10.1186/1476-072X-10-62

Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain
Cited by: 20
Author(s): Pau Dominkovics, Carlos Granell, Antoni Pérez-Navarro, Martí Casals, Àngels Orcau, Joan A. Caylà
Software Mentions: 2
Published: over 14 years ago

10.3389/fnins.2017.00509

A Comparative Study on the Dynamic EEG Center of Mass with Different References
Cited by: 11
Author(s): Yun Qin, Xiuwei Xin, Hao Zhu, Fali Li, Hongchuan Xiong, Tao Zhang, Yongxiu Lai
Software Mentions: 2
Published: over 8 years ago

10.1016/j.pneurobio.2020.101790

MeCP2 mediates transgenerational transmission of chronic pain
Cited by: 10
Author(s): Wenjuan Tao, Changmao Chen, Yuping Wang, Wenjie Zhou, Yan Jin, Yu Mao, Haitao Wang, Likui Wang, Wen Xie, Xulai Zhang, Jie Li, Juan Li, Xiang-Yao Li, Zhen Quan Tang, Chenghua Zhou, Zhizhong Z. Pan, Zhi Zhang
Software Mentions: 2
Published: about 6 years ago

10.1002/pro.3978

The <scp>BioGRID</scp> database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
Cited by: 612
Author(s): Rose Oughtred, Jennifer Rust, Christie S. Chang, Bobby-Joe Breitkreutz, Chris Stark, Andrew Willems, Lorrie Boucher, Genie Leung, Nadine K. Kolas, Frederick Zhang, Sonam Dolma, Jasmin Coulombe-Huntington, Andrew Chatr‐aryamontri, Kara Dolinski, Mike Tyers
Software Mentions: 2
Published: over 5 years ago

10.3389/fnins.2018.00996

Altered Functional Connectivity of Cerebello-Cortical Circuit in Multiple System Atrophy (Cerebellar-Type)
Cited by: 20
Author(s): Shan Ren, Hao Zhang, Wengang Zheng, Ming Liu, Fang Gao, Zhiqun Wang, Zhigang Chen
Software Mentions: 2
Published: over 7 years ago

10.1093/ijnp/pyw062

Down-Regulation of Hippocampal Genes Regulating Dopaminergic, GABAergic, and Glutamatergic Function Following Combined Neonatal Phencyclidine and Post-Weaning Social Isolation of Rats as a Neurodevelopmental Model for Schizophrenia
Cited by: 24
Author(s): Philip Gaskin, Maria Toledo-Rodriguez, Stephen P.H. Alexander, Kevin C. F. Fone
Software Mentions: 2
Published: almost 10 years ago

10.3389/fnins.2016.00313

Systemic Low-Frequency Oscillations in BOLD Signal Vary with Tissue Type
Cited by: 25
Author(s): Yunjie Tong, Lia M. Hocke, Kimberly P. Lindsey, Sinem Burcu Erdoğan, Gordana Vitaliano, Carolyn E. Caine, Blaise deB. Frederick
Software Mentions: 2
Published: almost 10 years ago

10.1186/1465-9921-14-85

Carcinoembryonic antigen (CEA)-related cell adhesion molecules are co-expressed in the human lung and their expression can be modulated in bronchial epithelial cells by non-typable Haemophilus influenzae, Moraxella catarrhalis, TLR3, and type I and II interferons
Cited by: 59
Author(s): Esther Klaile, Tilman E. Klassert, Inka Scheffrahn, Müller Mm, A Heinrich, Kerstin A. Heyl, Hendrik Dienemann, Christian Grünewald, Robert Bals, Bernhard B. Singer, Hortense Slevogt
Software Mentions: 2
Published: almost 13 years ago

10.22074/cellj.2020.6193

Repression of TGF-β Signaling in Breast Cancer Cells by miR-302/367 Cluster.
Cited by: 4
Author(s): Mona Ahmadalizadeh Khanehsar, Moslem Hoseinbeyki, Masoumeh Fakhr Taha, Arash Javeri
Software Mentions: 2
Published: over 6 years ago

10.3389/fninf.2014.00053

Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer
Cited by: 8
Author(s): David Gutman, William D. Dunn, Jake Cobb, Richard Martin Stoner, Jayashree Kalpathy‐Cramer, Bradley J. Erickson
Software Mentions: 2
Published: about 12 years ago

10.3389/fninf.2018.00056

Neuroscience Information Toolbox: An Open Source Toolbox for EEG–fMRI Multimodal Fusion Analysis
Cited by: 47
Author(s): Li Dong, Luo Chen, Xiaobo Liu, Sisi Jiang, Fali Li, Hongshuo Feng, Jianfu Li, Diankun Gong, Dezhong Yao
Software Mentions: 2
Published: almost 8 years ago

10.22074/cellj.2021.7139

Long-Term Effects of Hippocampal Low-Frequency Stimulation on Pro-Inflammatory Factors and Astrocytes Activity in Kindled Rats.
Cited by: 1
Author(s): Razieh Rohani, Abbas Aliaghaei, Mohammad‐Amin Abdollahifar, Yousef Sadeghi, Leila Zare, Samaneh Dehghan, Mohammad Hassan Heidari
Software Mentions: 2
Published: about 5 years ago

10.1140/epjc/s10052-016-4372-6

TREX-DM: a low-background Micromegas-based TPC for low-mass WIMP detection
Cited by: 32
Author(s): F.J. Iguaz, J.G. Garza, Francisco Aznar, J. Castel, S. Cebrián, T. Dafní, Juan Antonio Garcı́a, I. G. Irastorza, A. Lagraba, G. Luzón, A. Peiró
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0233088

Betanin purification from red beetroots and evaluation of its anti-oxidant and anti-inflammatory activity on LPS-activated microglial cells
Cited by: 26
Author(s): Hosein Ahmadi, Zahra Nayeri, Zarrin Minuchehr, Farzaneh Sabouni, Mehdi Mohammadi
Software Mentions: 2
Published: about 6 years ago

10.1038/s41419-020-2269-7

Loss of RE-1 silencing transcription factor accelerates exocrine damage from pancreatic injury
Cited by: 12
Author(s): J. W. Bray, Ola A. Elgamal, Jinmai Jiang, Lais S. Wright, Dhruvitkumar S. Sutaria, Mohamed Badawi, Madeline G. Borcyk, Xiuli Liu, Kristianna M. Fredenburg, Martha Campbell-Thompson, Thomas D. Schmittgen
Software Mentions: 2
Published: over 6 years ago

10.3389/fnins.2013.00137

A multi-site resting state fMRI study on the amplitude of low frequency fluctuations in schizophrenia
Cited by: 134
Author(s): Jessica A. Turner, Eswar Damaraju, Theo G.M. van Erp, Daniel H. Mathalon, Judith M. Ford, James T. Voyvodic, Bryon A. Mueller, Ayşenil Belger, Juan Bustillo, Sarah McEwen, Steven G. Potkin, Fbirn, Vince D. Calhoun
Software Mentions: 2
Published: over 13 years ago

10.1093/database/bav119

Ensembl regulation resources
Cited by: 43
Author(s): Daniel R. Zerbino, Nathan Johnson, Thomas Juetteman, Dan Sheppard, Steven P. Wilder, Ilias Lavidas, Michael Nuhn, Emily Perry, Quentin Raffaillac-Desfosses, Daniel Sobral, Damian Keefe, Stefan Gräf, Ikhlak Ahmed, Rhoda Kinsella, Bethan Pritchard, Simon Brent, Ridwan M Amode, Anne Parker, Stephen J. Trevanion, Ewan Birney, Ian Dunham, Paul Flicek
Software Mentions: 2
Published: over 10 years ago

10.3389/fnins.2020.607912

Effects of the Openness to Experience Polygenic Score on Cortical Thickness and Functional Connectivity
Cited by: 1
Author(s): Zhiting Ren, Cheng Liu, J. Meng, Qiang Liu, Liang Shi, Xinran Wu, Song Li, Jiang Qiu
Software Mentions: 2
Published: over 5 years ago

Projects: cran: REST

Science Score: 75/100

Penalties:

Papers Mentioning REST 1,757