Ecosyste.ms: Papers

10.3389/fpls.2020.585202

Ocean Acidification and Warming Lead to Increased Growth and Altered Chloroplast Morphology in the Thermo-Tolerant Alga Symbiochlorum hainanensis
Cited by: 10
Author(s): Sanqiang Gong, Xuejie Jin, Yilin Xiao, Zhiyong Li
Software Mentions: 2
Published: about 4 years ago

10.3390/genes11060681

Novel Insights into the Protective Properties of ACTH(4-7)PGP (Semax) Peptide at the Transcriptome Level Following Cerebral Ischaemia–Reperfusion in Rats
Cited by: 15
Author(s): Ivan B. Filippenkov, Vasily V. Stavchansky, Alina E. Denisova, Vadim V. Yuzhakov, L.E. Sevankaeva, Olga Yu. Sudarkina, В. Г. Дмитриева, Leonid V. Gubsky, N. F. Myasoedov, Svetlana A. Limborska, Lyudmila V. Dergunova
Software Mentions: 2
Published: over 4 years ago

10.3389/fnhum.2018.00322

Mapping the Spatiotemporal Evolution of Emotional Processing: An MEG Study Across Arousal and Valence Dimensions
Cited by: 11
Author(s): Charis Styliadis, Andreas A. Ioannides, Panagiotis D. Bamidis, Christos Papadelis
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-020-03952-1

DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks
Cited by: 33
Author(s): Chen Chen, Jie Hou, Xiaowen Shi, Hua Yang, James A. Birchler
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnhum.2014.00409

Network complexity as a measure of information processing across resting-state networks: evidence from the Human Connectome Project
Cited by: 101
Author(s): Ian M. McDonough, Kaoru Nashiro
Software Mentions: 2
Published: over 10 years ago

10.3389/fcell.2017.00012

The Importance of REST for Development and Function of Beta Cells
Cited by: 21
Author(s): David Martín, Anne Grapin-Botton
Software Mentions: 2
Published: over 7 years ago

10.18632/aging.202763

Gut microbiota from mice with cerebral ischemia-reperfusion injury affects the brain in healthy mice
Cited by: 10
Author(s): Wang Hong-ru, Shangjun Ren, Hailing Lv, Lili Cao
Software Mentions: 2
Published: over 3 years ago

10.3389/fnhum.2020.574148

Brain Responses to Food Odors Associated With BMI Change at 2-Year Follow-Up
Cited by: 6
Author(s): Pengfei Han, Hong Chen, Thomas Hummel
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2164-11-582

Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba)
Cited by: 43
Author(s): Paul J. Seear, Geraint A. Tarling, Gavin Burns, William P. Goodall‐Copestake, E. Gaten, Özge Özkaya, Ezio Rosato
Software Mentions: 2
Published: about 14 years ago

10.1186/s12859-015-0797-4

Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data
Cited by: 34
Author(s): Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Große
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-14-657

Targets of light signalling in Trichoderma reesei
Cited by: 67
Author(s): Doris Tisch, Monika Schmoll
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12991-018-0217-z

Resting-state brain activity in Chinese boys with low functioning autism spectrum disorder
Cited by: 13
Author(s): Gaizhi Li, Kathryn Rossbach, Wenqing Jiang, Yasong Du
Software Mentions: 2
Published: about 6 years ago

10.3389/fnagi.2014.00075

Deciphering the Molecular Profile of Plaques, Memory Decline and Neuron Loss in Two Mouse Models for Alzheimer’s Disease by Deep Sequencing
Cited by: 71
Author(s): Yvonne Bouter, Tim Kacprowski, Robert Weißmann, Katharina Dietrich, Henning Borgers, Andreas Brauß, Christian Sperling, Oliver Wirths, Mario Albrecht, Lars Riff Jensen, Andreas W. Kuß, Thomas A. Bayer
Software Mentions: 2
Published: over 10 years ago

10.3389/fbioe.2019.00106

Cyberbiosecurity Challenges of Pathogen Genome Databases
Cited by: 15
Author(s): Boris A. Vinatzer, Lenwood S. Heath, Hussain M. J. Almohri, Michael J. Stulberg, Christopher J. Lowe, Song Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fnhum.2015.00386

GRETNA: a graph theoretical network analysis toolbox for imaging connectomics
Cited by: 544
Author(s): Jinhui Wang, Xindi Wang, Mingrui Xia, Xuhong Liao, Alan C. Evans, Yong He
Software Mentions: 2
Published: over 9 years ago

10.1186/gb-2009-10-7-r81

Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine
Cited by: 71
Author(s): Katharine J Webb, William Norton, Dietrich Trümbach, Annemarie H. Meijer, Jovica Ninkovic, Stefanie Topp, Daniel W. Heck, Carsten Marr, Wolfgang Wurst, Fabian J. Theis, Herman P. Spaink, Laure Bally‐Cuif
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12859-020-03928-1

Menoci: lightweight extensible web portal enhancing data management for biomedical research projects
Cited by: 7
Author(s): Markus Suhr, Christoph U. Lehmann, Christian R. Bauer, Theresa Bender, Cornelius Knopp, Luca Freckmann, Björn Öst Hansen, Christian Henke, Georg Aschenbrandt, Lea K Kühlborn, Sophia Rheinländer, Linus Weber, Bartlomiej Marzec, Marcel Hellkamp, Philipp Wieder, Harald Kusch, Ulrich Sax, Sara Y. Nussbeck
Software Mentions: 2
Published: almost 4 years ago

10.1093/database/bav049

An Ebola virus-centered knowledge base
Cited by: 13
Author(s): Maulik R. Kamdar, Michel Dumontier
Software Mentions: 2
Published: almost 10 years ago

10.1093/database/bau050

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification
Cited by: 22
Author(s): Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
Software Mentions: 2
Published: over 10 years ago

10.1093/database/bav119

Ensembl regulation resources
Cited by: 43
Author(s): Daniel R. Zerbino, Nathan Johnson, Thomas Juetteman, Dan Sheppard, Steven P. Wilder, Ilias Lavidas, Michael Nuhn, Emily Perry, Quentin Raffaillac-Desfosses, Daniel Sobral, Damian Keefe, Stefan Gräf, Ikhlak Ahmed, Rhoda Kinsella, Bethan Pritchard, Simon Brent, Ridwan M Amode, Anne Parker, Stephen J. Trevanion, Ewan Birney, Ian Dunham, Paul Flicek
Software Mentions: 2
Published: almost 9 years ago

10.1155/2021/5565824

Decoding of Motor Coordination Imagery Involving the Lower Limbs by the EEG-Based Brain Network
Cited by: 2
Author(s): Yunfa Fu, Zhouzhou Zhou, Anmin Gong, Qian Qian, Lei Su, Zhixin Lei
Software Mentions: 2
Published: over 3 years ago

10.1093/texcom/tgab035

Behavioral and Neural Signatures of Visual Imagery Vividness Extremes: Aphantasia versus Hyperphantasia
Cited by: 46
Author(s): Fraser Milton, Jon Fulford, Carla Dance, James Gaddum, Brittany Heuerman-Williamson, Kealan Jones, Kathryn F Knight, Matthew MacKisack, Crawford Winlove, Adam Zeman
Software Mentions: 2
Published: almost 4 years ago

10.1039/c8cs00040a

Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments
Cited by: 109
Author(s): Pim W. J. M. Frederix, Ilias Patmanidis, Siewert J. Marrink
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-015-1856-y

Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium
Cited by: 27
Author(s): Florence Kurth, Lasse Feldhahn, Markus Bönn, Sylvie Herrmann, François Buscot, Mika Tarkka
Software Mentions: 2
Published: about 9 years ago

10.1038/s42003-020-01497-w

Fine-mapping and cell-specific enrichment at corneal resistance factor loci prioritize candidate causal regulatory variants
Cited by: 7
Author(s): Xinyi Jiang, Nefeli Dellepiane, Erola Pairo-Castineira, Thibaud Boutin, Yatendra Kumar, Wendy A. Bickmore, Véronique Vitart
Software Mentions: 2
Published: almost 4 years ago

10.22074/cellj.2020.6193

Repression of TGF-β Signaling in Breast Cancer Cells by miR-302/367 Cluster.
Cited by: 4
Author(s): Mona Ahmadalizadeh Khanehsar, Moslem Hoseinbeyki, Masoumeh Fakhr Taha, Arash Javeri
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-020-06806-5

Oak displays common local but specific distant gene regulation responses to different mycorrhizal fungi
Cited by: 13
Author(s): Marie-Lara Bouffaud, Sylvie Herrmann, Mika Tarkka, Markus Bönn, Lasse Feldhahn, François Buscot
Software Mentions: 2
Published: over 4 years ago

10.22074/cellj.2021.7139

Long-Term Effects of Hippocampal Low-Frequency Stimulation on Pro-Inflammatory Factors and Astrocytes Activity in Kindled Rats.
Cited by: 1
Author(s): Razieh Rohani, Abbas Aliaghaei, Mohammad‐Amin Abdollahifar, Yousef Sadeghi, Leila Zare, Samaneh Dehghan, Mohammad Hassan Heidari
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-020-2269-7

Loss of RE-1 silencing transcription factor accelerates exocrine damage from pancreatic injury
Cited by: 12
Author(s): J. W. Bray, Ola A. Elgamal, Jinmai Jiang, Lais S. Wright, Dhruvitkumar S. Sutaria, Mohamed Badawi, Madeline G. Borcyk, Xiuli Liu, Kristianna M. Fredenburg, Martha Campbell-Thompson, Thomas D. Schmittgen
Software Mentions: 2
Published: almost 5 years ago

10.22074/cellj.2020.6582

Cardiac Differentiation of Adipose Tissue-Derived Stem Cells Is Driven by BMP4 and bFGF but Counteracted by 5-Azacytidine and Valproic Acid.
Cited by: 3
Author(s): Sanaz Hasani, Arash Javeri, Asadollah Asadi, Masoumeh Fakhr Taha
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-018-2016-6

BRCA-Pathway: a structural integration and visualization system of TCGA breast cancer data on KEGG pathways
Cited by: 18
Author(s): In-Young Kim, Saemi Choi, Sun Kim
Software Mentions: 2
Published: almost 7 years ago

10.1038/s42003-019-0342-5

Tasmanian devils with contagious cancer exhibit a constricted T-cell repertoire diversity
Cited by: 13
Author(s): Yuanyuan Cheng, Mariano Makara, Emma Peel, Samantha Fox, Anthony T. Papenfuss, Katherine Belov
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0036986

Connectivity of Default-Mode Network Is Associated with Cerebral Edema in Hepatic Encephalopathy
Cited by: 26
Author(s): Wei Che Lin, Tun-Wei Hsu, Chao Long Chen, Changwei W. Wu, Cheng Hsien Lu, Hsiu-Ling Chen, Shau Hsuan Li, Pin Yang Yeh, Yu Cheng, Ching Po Lin
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-018-5039-5

Genome-wide transcriptome analysis using RNA-Seq reveals a large number of differentially expressed genes in a transient MCAO rat model
Cited by: 46
Author(s): Lyudmila V. Dergunova, Ivan B. Filippenkov, Vasily V. Stavchansky, Alina E. Denisova, Vadim V. Yuzhakov, С. А. Мозеров, Leonid V. Gubsky, Svetlana A. Limborska
Software Mentions: 2
Published: about 6 years ago

10.1186/s12870-018-1244-2

Diel pattern of circadian clock and storage protein gene expression in leaves and during seed filling in cowpea (Vigna unguiculata)
Cited by: 13
Author(s): Julia Weiß, Marta I. Terry, Marina Martos-Fuentes, Lisa Letourneux, Victoria Ruiz-Hernández, Juan Antonio Fernández Hernández, Marcos Egea‐Cortines
Software Mentions: 2
Published: almost 7 years ago

10.3389/fnhum.2015.00074

Differential cerebral response to somatosensory stimulation of an acupuncture point vs. two non-acupuncture points measured with EEG and fMRI
Cited by: 27
Author(s): Till Nierhaus, Daniel Pach, Weixin Huang, Xiangyu Long, Vitaly Napadow, Stephanie Roll, Fanrong Liang, Burkhard Pleger, Arno Villringer, Claudia M. Witt
Software Mentions: 2
Published: almost 10 years ago

10.3390/antiox9020180

Pharmacological Targets of Kaempferol Within Inflammatory Pathways—A Hint Towards the Central Role of Tryptophan Metabolism
Cited by: 15
Author(s): Stefanie Hofer, Simon Geisler, Rebecca Lisandrelli, Huu Tung Nguyen, Markus Ganzera, Harald Schennach, Dietmar Fuchs, Julian E. Fuchs, Johanna M. Gostner, Katharina Kurz
Software Mentions: 2
Published: over 4 years ago

10.1186/s12888-020-02831-6

Emotion reactivity-related brain network analysis in generalized anxiety disorder: a task fMRI study
Cited by: 12
Author(s): Jian Li, Yuan Zhong, Zijuan Ma, Yun Wu, Manlong Pang, Chiyue Wang, Na Liu, Chun Wang, Ning Zhang
Software Mentions: 2
Published: about 4 years ago

10.1186/s12888-016-1047-7

Association between abnormal default mode network activity and suicidality in depressed adolescents
Cited by: 125
Author(s): Shuang Zhang, Jianmei Chen, Li Kuang, Jian Cao, Han Zhang, Ming Ai, Wo Wang, Shudong Zhang, Suya Wang, Shijing Liu, Weidong Fang
Software Mentions: 2
Published: about 8 years ago

10.3389/fnhum.2019.00365

Stereoscopic Rendering via Goggles Elicits Higher Functional Connectivity During Virtual Reality Gaming
Cited by: 9
Author(s): Caroline Garcia Forlim, Lukas Bittner, Fariba Mostajeran, Frank Steinicke, Jürgen Gallinat, Simone Kühn
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0040266

Functional Feeds Reduce Heart Inflammation and Pathology in Atlantic Salmon (Salmo salar L.) following Experimental Challenge with Atlantic Salmon Reovirus (ASRV)
Cited by: 55
Author(s): Laura Martínez-Rubio, Sofía Morais, Øystein Evensen, Simón Wadsworth, Kari Ruohonen, Jose L. González Vecino, J.G. Bell, Douglas R. Tocher
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0028254

Filaggrin Genotype Determines Functional and Molecular Alterations in Skin of Patients with Atopic Dermatitis and Ichthyosis Vulgaris
Cited by: 60
Author(s): M Winge, Torborg Hoppe, Berit Berne, Anders Vahlquist, Magnus Nordenskjöld, J. F. N. Bradley, Hans Törmä
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2164-14-607

RNA-seq analyses of gene expression in the microsclerotia of Verticillium dahliae
Cited by: 69
Author(s): Dechassa Duressa, Amy Anchieta, Dongquan Chen, Anna Klimes, Maria D. García-Pedrajas, Katherine F. Dobinson, Steven J. Klosterman
Software Mentions: 2
Published: about 11 years ago

10.1186/s12888-016-1190-1

Altered fractional amplitude of low frequency fluctuation associated with cognitive dysfunction in first-episode drug-naïve major depressive disorder patients
Cited by: 32
Author(s): Manli Huang, Shengyong Lu, Liang Yu, Lingjiang Li, Peng Zhang, Jianbo Hu, Weihua Zhou, Shaohua Hu, Ning Wei, Jinwen Huang, Jian Weng, Yi Xu
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0162237

RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease
Cited by: 43
Author(s): Patrícia Dayane Carvalho Schaker, Aristides Palhares, Lucas Mitsuo Taniguti, Leila Priscila Peters, Silvana Creste, Karen S. Aitken, Marie‐Anne Van Sluys, João Paulo Kitajima, Maria Lúcia Carneiro Vieira, Cláudia Barros Monteiro-Vitorello
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-015-1574-5

Key genes as stress indicators in the ubiquitous diatom Skeletonema marinoi
Cited by: 35
Author(s): Chiara Lauritano, Ida Orefice, Gabriele Procaccini, Giovanna Romano, Adrianna Ianora
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0144937

From Insect to Man: Photorhabdus Sheds Light on the Emergence of Human Pathogenicity
Cited by: 28
Author(s): Geraldine Mulley, Michael L. Beeton, Paul Wilkinson, Isabella Vlisidou, Nina Ockendon-Powell, Alexia Hapeshi, Nicholas J. Tobias, Friederike I. Nollmann, Helge B. Bode, Jean M. H. van den Elsen, Richard H. ffrench-Constant, Nicholas R. Waterfield
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12863-018-0702-z

The transcription factor PRO44 and the histone chaperone ASF1 regulate distinct aspects of multicellular development in the filamentous fungus Sordaria macrospora
Cited by: 14
Author(s): David Immanuel Schumacher, Ramona Lütkenhaus, Florian Altegoer, Ines Teichert, Ulrich Kück, Minou Nowrousian
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0233088

Betanin purification from red beetroots and evaluation of its anti-oxidant and anti-inflammatory activity on LPS-activated microglial cells
Cited by: 26
Author(s): Hosein Ahmadi, Zahra Nayeri, Zarrin Minuchehr, Farzaneh Sabouni, Mehdi Mohammadi
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0162828

The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia
Cited by: 6
Author(s): Satoshi Mizuno, Soichi Ogishima, Hidekazu Nishigori, Daniel Jamieson, Karin Verspoor, Hiroshi Tanaka, Nobuo Yaegashi, Jun Nakaya
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2018.01435

Functional Analysis of Four Terpene Synthases in Rose-Scented Pelargonium Cultivars (Pelargonium × hybridum) and Evolution of Scent in the Pelargonium Genus
Cited by: 15
Author(s): Bernard Blerot, Laure Martinelli, Cécile Prunier, Denis Saint-Marcoux, Sylvain Legrand, Aurélie Bony, Loïc Sarrabère, Florence Gros, Nicolas Boyer, Jean‐Claude Caissard, Sylvie Baudino, Frédéric Jullien
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0050064

Differential Deactivation during Mentalizing and Classification of Autism Based on Default Mode Network Connectivity
Cited by: 92
Author(s): Donna L. Murdaugh, Svetlana V. Shinkareva, Hrishikesh R. Deshpande, Jing Wang, Mark R. Pennick, Rajesh K. Kana
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0173289

Comparing resting state fMRI de-noising approaches using multi- and single-echo acquisitions
Cited by: 68
Author(s): Ottavia Dipasquale, Arjun Sethi, Maria Marcella Laganà, Francesca Baglio, Giuseppe Baselli, Prantik Kundu, Neil A. Harrison, Mara Cercignani
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0159563

Glutathione S-Transferase Regulation in Calanus finmarchicus Feeding on the Toxic Dinoflagellate Alexandrium fundyense
Cited by: 9
Author(s): Vittoria Roncalli, Michelle J. Jungbluth, Petra H. Lenz
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2180-12-S1-S1

Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare
Cited by: 45
Author(s): Frédéric D. Chevalier, Juline Herbinière-Gaboreau, Delphine Charif, Guillaume Mitta, Frédérick Gavory, Patrick Wincker, Pierre Grève, Christine Braquart‐Varnier, Didier Bouchon
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0243869

Evaluation of the impact of surgical aortic valve replacement on short-term cardiovascular and cerebrovascular controls through spontaneous variability analysis
Cited by: 6
Author(s): Alberto Porta, Angela Fantinato, Vlasta Bari, Francesca Gelpi, Beatrice Cairo, Beatrice De Maria, Enrico Giuseppe Bertoldo, Valentina Fiolo, Edward Callus, Carlo De Vincentiis, Marianna Volpe, Raffaella Molfetta, Marco Ranucci
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2180-12-S1-S14

Host gene response to endosymbiont and pathogen in the cereal weevil Sitophilus oryzae
Cited by: 38
Author(s): Aurélien Vigneron, Delphine Charif, Carole Vincent-Monégat, Agnès Vallier, Frédérick Gavory, Patrick Wincker, Abdelaziz Heddi
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0076234

NR4A2 Is Regulated by Gastrin and Influences Cellular Responses of Gastric Adenocarcinoma Cells
Cited by: 13
Author(s): Kristine Misund, Linn-Karina M. Selvik, Shalini Rao, Kristin G. Nørsett, Ingrid Bakke, Arne K. Sandvik, Astrid Lægreid, Torunn Bruland, Wenche S. Prestvik, Liv Thommesen
Software Mentions: 2
Published: about 11 years ago

10.3390/antiox9080662

Neuroprotective Effect of HIF Prolyl Hydroxylase Inhibition in an In Vitro Hypoxia Model
Cited by: 18
Author(s): Maria Savyuk, Mikhail Krivonosov, Tatiana A. Mishchenko, Irina G. Gazaryan, Mikhail Ivanchenko, A. Yu. Khristichenko, Andrey Poloznikov, Dmitry M. Hushpulian, С. В. Никулин, E. A. Tonevitsky, Guzal Abuzarova, Еlena V. Mitroshina, Maria V. Vedunova
Software Mentions: 2
Published: over 4 years ago

10.1002/hbm.25429

Taking the body off the mind: Decreased functional connectivity between somatomotor and default‐mode networks following Floatation‐REST
Cited by: 12
Author(s): Obada Al Zoubi, Masaya Misaki, Jerzy Bodurka, Rayus Kuplicki, Colleen Wohlrab, William A. Schoenhals, Hazem H. Refai, Sahib S. Khalsa, Murray B. Stein, Martin P. Paulus, Justin S. Feinstein
Software Mentions: 2
Published: over 3 years ago

10.1186/1472-6947-13-57

Applying representational state transfer (REST) architecture to archetype-based electronic health record systems
Cited by: 30
Author(s): Erik Sundvall, Mikael Nyström, Daniel Karlsson, Martin Eneling, Rong Chen, Håkan Örman
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0212089

In vitro evaluation of the protective effects of plant extracts against amyloid-beta peptide-induced toxicity in human neuroblastoma SH-SY5Y cells
Cited by: 23
Author(s): Ana Luiza Sereia, Marcelo Tempesta de Oliveira, Adrivânio Baranoski, Leila Larisa Medeiros Marques, Fabianne Martins Ribeiro, Raquel Garcia Isolani, Daniela Cristina de Medeiros Araújo, Danielly Chierrito, Danielle Lazarin-Bidóia, Acácio Antônio Ferreira Zielinski, Cláudio Roberto Novello, Celso Vataru Nakamura, Mário Mantovani, João Carlos Palazzo de Mello
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0148451

Identification and Validation of Reference Genes and Their Impact on Normalized Gene Expression Studies across Cultivated and Wild Cicer Species
Cited by: 37
Author(s): D. Srinivas Reddy, Pooja Bhatnagar‐Mathur, Palakolanu Sudhakar Reddy, Katamreddy Sri Cindhuri, Adusumalli Sivaji Ganesh, Kiran K. Sharma
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0077914

Regional Brain Atrophy and Functional Connectivity Changes Related to Fatigue in Multiple Sclerosis
Cited by: 63
Author(s): Álvaro Javier Cruz-Gómez, Noelia Ventura‐Campos, Antonio Belenguer, César Ávila, Cristina Forn
Software Mentions: 2
Published: about 11 years ago

10.1140/epjc/s10052-016-4372-6

TREX-DM: a low-background Micromegas-based TPC for low-mass WIMP detection
Cited by: 32
Author(s): F.J. Iguaz, J.G. Garza, Francisco Aznar, J. Castel, S. Cebrián, T. Dafní, Juan Antonio Garcı́a, I. G. Irastorza, A. Lagraba, G. Luzón, A. Peiró
Software Mentions: 2
Published: about 8 years ago

10.1093/jxb/erv285

The<i>IDA/IDA-LIKE</i>and<i>PIP/PIP-LIKE</i>gene families in<i>Arabidopsis</i>: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide
Cited by: 64
Author(s): Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert P. Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-12-423

Testing the importance of jasmonate signalling in induction of plant defences upon cabbage aphid (Brevicoryne brassicae) attack
Cited by: 57
Author(s): Anna Kuśnierczyk, Diem Hong Tran, Per Winge, Tommy S Jørstad, John C. Reese, Joanna Troczyńska, Atle M. Bones
Software Mentions: 2
Published: over 13 years ago

10.1093/jxb/erv516

Kresoxim-methyl primes<i>Medicago truncatula</i>plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment
Cited by: 28
Author(s): Panagiota Filippou, Chrystalla Antoniou, Toshihiro Obata, Katrien Van Der Kelen, Vaggelis Harokopos, Loukas Kanetis, Vassilis Aidinis, Frank Van Breusegem, Alisdair R. Fernie, Vasileios Fotopoulos
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12911-014-0123-5

A RESTful interface to pseudonymization services in modern web applications
Cited by: 54
Author(s): Martin Lablans, Andreas Borg, Frank Ückert
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12911-019-0794-z

QL4MDR: a GraphQL query language for ISO 11179-based metadata repositories
Cited by: 7
Author(s): Hans Ulrich, Jori Kern, Deniz Tas, Ann-Kristin Kock-Schoppenhauer, Frank Ückert, Josef Ingenerf, Martin Lablans
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0098346

Structural and Functional Brain Alterations in End Stage Renal Disease Patients on Routine Hemodialysis: A Voxel-Based Morphometry and Resting State Functional Connectivity Study
Cited by: 51
Author(s): Yingwei Qiu, Xiaofei Lv, Huanhuan Su, Guihua Jiang, Cheng Li, Tian Jian-guo
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0115867

Identification of Genes Associated with Reproduction in the Mud Crab (Scylla olivacea) and Their Differential Expression following Serotonin Stimulation
Cited by: 19
Author(s): Napamanee Kornthong, Scott F. Cummins, Charoonroj Chotwiwatthanakun, Kanjana Khornchatri, Attakorn Engsusophon, Peter Hanna, Prasert Sobhon
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0089463

Effect of Age on Complexity and Causality of the Cardiovascular Control: Comparison between Model-Based and Model-Free Approaches
Cited by: 80
Author(s): Alberto Porta, Luca Faes, Vlasta Bari, Andrea Marchi, Tito Bassani, Giandomenico Nollo, Natália Maria Perseguini, Juliana Cristina Milan, Vinícius Minatel, Audrey Borghi‐Silva, Anielle Cristhine de Medeiros Takahashi, Aparecida Maria Catai
Software Mentions: 2
Published: over 10 years ago

10.1038/srep42278

Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents
Cited by: 20
Author(s): Irene Olivé, João Silva, Chiara Lauritano, Monya M. Costa, Miriam Ruocco, Gabriele Procaccini, Rui Santos
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0175415

An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.): Effects on intestinal transcriptome, histology, tissue fatty acid profiles and plasma biochemistry
Cited by: 64
Author(s): Mónica B. Betancor, Keshuai Li, Matthew Sprague, Tora Bardal, Olga Sayanova, Sarah Usher, Lihua Han, Kjell Måsøval, Ole Torrissen, Johnathan A. Napier, Douglas R. Tocher, Rolf Erik Olsen
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0124681

Frequency Dependent Topological Patterns of Resting-State Brain Networks
Cited by: 32
Author(s): Long Qian, Yi Zhang, Li Zheng, Yuqing Shang, Jia‐Hong Gao, Yijun Liu
Software Mentions: 2
Published: over 9 years ago

10.1186/1755-8794-5-33

The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated
Cited by: 29
Author(s): Shubin Shahab, Lilya V. Matyunina, Christopher G. Hill, Limin Wang, Roman Mezencev, L. DeEtte Walker, John F. McDonald
Software Mentions: 2
Published: over 12 years ago

10.1186/1755-8794-2-65

Gene expression profiling in sinonasal adenocarcinoma
Cited by: 32
Author(s): Dominique Tripodi, Sylvia Quéméner, Karine Renaudin, Christophe Ferron, O. Malard, Isabelle Guisle‐Marsollier, Véronique Sebille, Christian Verger, C. Géraut, Catherine Gratas
Software Mentions: 2
Published: about 15 years ago

10.1128/mSystems.00124-16

Direct Heme Uptake by Phytoplankton-Associated <i>Roseobacter</i> Bacteria
Cited by: 23
Author(s): Shane L. Hogle, Bianca Brahamsha, Katherine A. Barbeau
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0215729

Reference genes selection for Calotropis procera under different salt stress conditions
Cited by: 6
Author(s): Maria Reis Valois Coêlho, Rebeca Rivas, José Ribamar Costa Ferreira‐Neto, Valesca Pandolfi, João Pacífico Bezerra-Neto, Ana Maria Benko‐Iseppon, Mariana Santos
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: almost 13 years ago

10.1155/2019/9520642

<i>DREB</i> Genes from Common Bean (<i>Phaseolus vulgaris</i> L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity
Cited by: 16
Author(s): Enéas Ricardo Konzen, Gustavo Henrique Recchia, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Jorge C. Berny Mier y Teran, Paul Gepts, Siu Mui Tsai
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0085364

Knocking-Down Meloidogyne incognita Proteases by Plant-Delivered dsRNA Has Negative Pleiotropic Effect on Nematode Vigor
Cited by: 50
Author(s): José Dijair Antonino de Souza Júnior, Roberta Ramos Coelho, Isabela Tristan Lourenço, Rodrigo da Rocha Fragoso, Antônio Américo Barbosa Viana, Leonardo Lima Pepino Macedo, Maria Cristina Mattar da Silva, Regina Maria Gomes Carneiro, Gilbert Engler, Janice de Almeida-Engler, Maria Fátima Grossi‐de‐Sá
Software Mentions: 2
Published: almost 11 years ago

10.1186/1476-072X-10-62

Development of spatial density maps based on geoprocessing web services: application to tuberculosis incidence in Barcelona, Spain
Cited by: 20
Author(s): Pau Dominkovics, Carlos Granell, Antoni Pérez-Navarro, Martí Casals, Àngels Orcau, Joan A. Caylà
Software Mentions: 2
Published: almost 13 years ago

10.1007/s12551-016-0234-6

Analytical methods for structural ensembles and dynamics of intrinsically disordered proteins
Cited by: 15
Author(s): Marieke Schor, Antonia S. J. S. Mey, Cait E. MacPhee
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0182407

Protective effects on the retina after ranibizumab treatment in an ischemia model
Cited by: 23
Author(s): Stephanie C. Joachim, Marina Renner, Jacqueline Reinhard, Carsten Theiß, Caroline May, Stephanie Lohmann, Sabrina Reinehr, Gesa Stute, Andréas Faissner, Katrin Marcus, H. Burkhard Dick
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0228680

Comparative transcriptome provides molecular insight into defense-associated mechanisms against spider mite in resistant and susceptible common bean cultivars
Cited by: 13
Author(s): Abdul Hadi Hoseinzadeh, Aboozar Soorni, Marie Shoorooei, Masoud Torkzadeh Mahani, R Maali Amiri, Hossein Allahyari, Reza Mohammadi
Software Mentions: 2
Published: almost 5 years ago

10.3390/biom10050743

Targeting Intrinsically Disordered Proteins through Dynamic Interactions
Cited by: 30
Author(s): Jianlin Chen, Xiaorong Liu, Jianhan Chen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0035549

Transcriptional Portrait of Actinobacillus pleuropneumoniae during Acute Disease - Potential Strategies for Survival and Persistence in the Host
Cited by: 32
Author(s): Kirstine Klitgaard, Carsten Friis, Tim Kåre Jensen, Øystein Angen, Mette Boye
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0013450

Chronic Hypoxia Impairs Muscle Function in the Drosophila Model of Duchenne's Muscular Dystrophy (DMD)
Cited by: 17
Author(s): Matías Mosqueira, Gabriel Willmann, Hannele Ruohola‐Baker, Tejvir S. Khurana
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0063081

Early-Stage Psychotherapy Produces Elevated Frontal White Matter Integrity in Adult Major Depressive Disorder
Cited by: 29
Author(s): Tao Wang, Xiaolan Huang, Peiyu Huang, Dan Li, Fajin Lv, Yong Zhang, Linke Zhou, Deyu Yang, Peng Xie
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0108200

Comparative Transcriptome Analysis Reveals the Genetic Basis of Skin Color Variation in Common Carp
Cited by: 72
Author(s): Yanliang Jiang, Songhao Zhang, Jian Xu, Jianxin Feng, Shahid Mahboob, Khalid A. Al‐Ghanim, Xin Sun, Peng Xu
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0065224

The Enterococcus faecium Enterococcal Biofilm Regulator, EbrB, Regulates the esp Operon and Is Implicated in Biofilm Formation and Intestinal Colonization
Cited by: 28
Author(s): Janetta Top, Fernanda L. Paganelli, Xinglin Zhang, Willem van Schaik, Helen L. Leavis, Miranda van Luit-Asbroek, Tom van der Poll, Masja Leendertse, Marc J. M. Bonten, Rob J. L. Willems
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0159934

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)
Cited by: 63
Author(s): Mónica B. Betancor, Matthew Sprague, Olga Sayanova, Sarah Usher, Christoforos Metochis, Patrick Campbell, Johnathan A. Napier, Douglas R. Tocher
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0121169

T-Cell Activation and Early Gene Response in Dogs
Cited by: 10
Author(s): Sally Mortlock, Jerry Wei, Peter Williamson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1002624

A Genome-Wide Screen for Genetic Variants That Modify the Recruitment of REST to Its Target Genes
Cited by: 15
Author(s): Rory Johnson, Nadine Richter, Gireesh K. Bogu, Akshay Bhinge, Siaw Wei Teng, Siew Hua Choo, Lise O. Andrieux, Cinzia De Benedictis, Ralf Jauch, Lawrence W. Stanton
Software Mentions: 2
Published: over 12 years ago

10.1155/2015/719076

Insulin Resistance-Associated Interhemispheric Functional Connectivity Alterations in T2DM: A Resting-State fMRI Study
Cited by: 27
Author(s): Wenqing Xia, Shaohua Wang, Andrea M. Spaeth, Hengyi Rao, Pin Wang, Yue Yang, Rong Huang, Rongrong Cai, Hao Sun
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pgen.1003915

FliZ Is a Global Regulatory Protein Affecting the Expression of Flagellar and Virulence Genes in Individual Xenorhabdus nematophila Bacterial Cells
Cited by: 24
Author(s): Grégory Jubelin, Anne Lanois, Dany Séverac, Stéphanie Rialle, C. F. H. Longin, Sophie Gaudriault, Alain Givaudan
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-11-455

Gene expression profiling in the lungs of pigs with different susceptibilities to Glässer's disease
Cited by: 23
Author(s): Jamie M. Wilkinson, Carole A. Sargent, L. Galina-Pantoja, Alexander W. Tucker
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pgen.1003994

Transcription Factor Occupancy Can Mediate Active Turnover of DNA Methylation at Regulatory Regions
Cited by: 201
Author(s): Angelika Feldmann, Robert Ivánek, Rabih Murr, Dimos Gaidatzis, Lukas Burger, Dirk Schübeler
Software Mentions: 2
Published: almost 11 years ago