cran: REST | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0206583

Test-retest reliability of task-based and resting-state blood oxygen level dependence and cerebral blood flow measures
Cited by: 46
Author(s): Štefan Holiga, Fabio Sambataro, Cécile Luzy, Gérard Greig, Neena Sarkar, Remco Renken, Jan-Bernard C Marsman, Scott Schobel, Alessandro Bertolino, Juergen Dukart
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2202-14-69

Abnormal activity of default mode network in GERD patients
Cited by: 4
Author(s): Huihui Sun, Ying Chen, Xiaofeng Zhao, Xiang-Bin Wang, Yilin Jiang, Peng Wu, Yinhan Tang, Qiang Meng, Shuchang Xu
Software Mentions: 3
Published: almost 13 years ago

10.1111/jipb.12862

Identification of plant genes putatively involved in the perception of fungal ergosterol‐squalene
Cited by: 15
Author(s): Laura Lindo, Rosa E. Cardoza, Alicia Lorenzana de la Varga, Pedro A. Casquero, Santiago Gutiérrez
Software Mentions: 3
Published: over 6 years ago

10.3390/s21051640

Towards Secure Fitness Framework Based on IoT-Enabled Blockchain Network Integrated with Machine Learning Algorithms
Cited by: 42
Author(s): Faisal Jamil, Hyun Kook Kahng, Su Yeon Kim, Do‐Hyeun Kim
Software Mentions: 3
Published: over 5 years ago

10.1038/tp.2016.69

Genome-wide gene-based analysis suggests an association between Neuroligin 1 (NLGN1) and post-traumatic stress disorder
Cited by: 57
Author(s): Varun Kilaru, Subramania Iyer, Lynn M. Almli, Jennifer Stevens, Adriana Lori, Tanja Jovanović, Timothy D. Ely, Bekh Bradley, Elisabeth B. Binder, Nastassja Koen, Dan J. Stein, Karen N. Conneely, Aliza P. Wingo, Alicia K. Smith, Kerry J. Ressler
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0221170

Inter-genus gene expression analysis in livestock fibroblasts using reference gene validation based upon a multi-species primer set
Cited by: 4
Author(s): Marcelo Tigre Moura, Roberta L. O. Silva, Pábola Santos Nascimento, José Carlos Ferreira-Silva, Ludymila Furtado Cantanhêde, Éderson Akio Kido, Ana Maria Benko‐Iseppon, Marcos Antônio Lemos Oliveira
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0080467

Runx3-mediated Transcriptional Program in Cytotoxic Lymphocytes
Cited by: 56
Author(s): Joseph Lotem, Ditsa Levanon, Varda Negreanu, Dena Leshkowitz, Gérard Friedlander, Yoram Groner
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0105707

Changes in Cecal Microbiota and Mucosal Gene Expression Revealed New Aspects of Epizootic Rabbit Enteropathy
Cited by: 50
Author(s): Christine Bäuerl, María Carmen Collado, Manuel Zúñiga, E. Blas, Gaspar Pérez‐Martínez
Software Mentions: 3
Published: almost 12 years ago

10.3390/s19081747

Meaningful Integration of Data from Heterogeneous Health Services and Home Environment Based on Ontology
Cited by: 32
Author(s): Cong Peng, Prashant Goswami
Software Mentions: 3
Published: about 7 years ago

10.3390/s20102990

IoT-Blockchain Enabled Optimized Provenance System for Food Industry 4.0 Using Advanced Deep Learning
Cited by: 129
Author(s): Prince Waqas Khan, Yung-Cheol Byun, Namje Park
Software Mentions: 3
Published: about 6 years ago

10.3390/s17102159

ROSA: Resource-Oriented Service Management Schemes for Web of Things in a Smart Home
Cited by: 8
Author(s): Chun-Feng Liao, Pengyu Chen
Software Mentions: 3
Published: over 8 years ago

10.3390/s16101645

From WSN towards WoT: Open API Scheme Based on oneM2M Platforms
Cited by: 13
Author(s): Jae-Ho Kim, Sung-Chan Choi, Il-Yeup Ahn, Nak-Myoung Sung, Jaeseok Yun
Software Mentions: 3
Published: over 9 years ago

10.3390/s18072052

A Plug-and-Play Human-Centered Virtual TEDS Architecture for the Web of Things
Cited by: 29
Author(s): Dixys Hernández Rojas, Tiago M. Fernández‐Caramés, Paula Fraga‐Lamas, Carlos J. Escudero
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pcbi.1008977

Swarm: A federated cloud framework for large-scale variant analysis
Cited by: 2
Author(s): Amir Bahmani, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, M Snyder, Cuiping Pan
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pcbi.1004008

A RESTful API for Accessing Microbial Community Data for MG-RAST
Cited by: 62
Author(s): Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D’Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
Software Mentions: 3
Published: over 11 years ago

10.3390/s131217292

Mobile Sensing Systems
Cited by: 79
Author(s): Elsa M. Macías, Álvaro Suárez, Jaime Lloret
Software Mentions: 3
Published: over 12 years ago

10.7717/peerj-cs.376

On automated RBAC assessment by constructing a centralized perspective for microservice mesh
Cited by: 4
Author(s): Dipta Das, Andrew Walker, Vincent Bushong, Jan Svacina, Tomáš Černý, Václav Matyáš
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.0030145

Systematic Identification of cis-Regulatory Sequences Active in Mouse and Human Embryonic Stem Cells
Cited by: 80
Author(s): Marica Grs̆ković, Christina Chaivorapol, Alexandre Gaspar-Maia, Hao Li, Miguel Ramalho-Santos
Software Mentions: 3
Published: almost 19 years ago

10.3390/s20164393

A Model for the Remote Deployment, Update, and Safe Recovery for Commercial Sensor-Based IoT Systems
Cited by: 1
Author(s): Alexandru Radovici, Ioana Culic, Daniel E. Rosner, Flavia Oprea
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0183526

Transcriptomic profile of cystic fibrosis patients identifies type I interferon response and ribosomal stalk proteins as potential modifiers of disease severity
Cited by: 23
Author(s): Michael Kormann, Alexander Dewerth, Felizitas A. Eichner, Praveen Baskaran, Andreas Hector, Nicolas Regamey, Dominik Hartl, Rupert Handgretinger, Justin S. Antony
Software Mentions: 3
Published: almost 9 years ago

10.1002/1878-0261.12903

REST promotes ETS1‐dependent vascular growth in medulloblastoma
Cited by: 9
Author(s): Shavali Shaik, Satoru Maegawa, Amanda R. Haltom, Feng Wang, Xue Xiao, Tara Dobson, Ajay Sharma, Yanwen Yang, Jyothishmathi Swaminathan, Vikas Kundra, Xiao Nan Li, Keri Schadler, Arif Harmanci, Lin Xu, Vidya Gopalakrishnan
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.00314

The Role of Programmed Cell Death Regulator LSD1 in Nematode-Induced Syncytium Formation
Cited by: 12
Author(s): Mateusz Matuszkiewicz, Mirosław Sobczak, Javier Cabrera, Carolina Escobar, Stanisław Karpiński, Marcin Filipecki
Software Mentions: 3
Published: about 8 years ago

10.3892/mmr.2015.3318

PUFA diets alter the microRNA expression profiles in an inflammation rat model
Cited by: 34
Author(s): Zheng Zhang, Yubin Ge, Jinyu Zhang, Meilan Xue, Quan Li, Dongliang Lin, Wenhui Ma
Software Mentions: 3
Published: over 11 years ago

10.1111/j.1365-2958.2011.07760.x

Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum
Cited by: 20
Author(s): J. Viñuelas, Gérard Febvay, G. Duport, Stefano Colella, Jean‐Michel Fayard, Hubert Charles, Yvan Rahbé, Federica Calevro
Software Mentions: 3
Published: almost 15 years ago

10.3389/fpls.2017.00882

Metabolome Dynamics of Smutted Sugarcane Reveals Mechanisms Involved in Disease Progression and Whip Emission
Cited by: 21
Author(s): Patrícia Dayane Carvalho Schaker, Leila Priscila Peters, Thaís Regiani Cataldi, Carlos Alberto Labate, Camila Caldana, Cláudia Barros Monteiro-Vitorello
Software Mentions: 3
Published: about 9 years ago

10.3389/fnins.2020.00545

MVPANI: A Toolkit With Friendly Graphical User Interface for Multivariate Pattern Analysis of Neuroimaging Data
Cited by: 25
Author(s): Yanmin Peng, Xi Zhang, Yifan Li, Qian Su, Sijia Wang, Feng Liu, Chunshui Yu, Meng Liang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fneur.2020.589125

The Medial Thalamus Plays an Important Role in the Cognitive and Emotional Modulation of Orofacial Pain: A Functional Magnetic Resonance Imaging-Based Study
Cited by: 10
Author(s): Jun Yu, Hong Yang, Feifei Zhang, Jue Wang, He Li, Xin Yang, Hu Long, Fēi Li, Qiyong Gong, Wenli Lai
Software Mentions: 3
Published: over 5 years ago

10.3389/fnins.2016.00515

A Hitchhiker's Guide to Functional Magnetic Resonance Imaging
Cited by: 132
Author(s): José Miguel Soares, Ricardo Magalhães, Pedro Silva Moreira, Alexandre Vieira de Sousa, Edward Ganz, Adriana Sampaio, Victor Alves, Paulo Marques, Nuno Sousa
Software Mentions: 3
Published: over 9 years ago

10.3389/fmolb.2016.00002

A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks
Cited by: 6
Author(s): Benjamin Merlet, Nils Paulhe, Florence Vinson, Clément Frainay, Maxime Chazalviel, Nathalie Poupin, Yoann Gloaguen, Franck Giacomoni, Fabien Jourdan
Software Mentions: 3
Published: over 10 years ago

10.3389/fimmu.2019.01928

The Transcriptional and Protein Profile From Human Infected Neuroprogenitor Cells Is Strongly Correlated to Zika Virus Microcephaly Cytokines Phenotype Evidencing a Persistent Inflammation in the CNS
Cited by: 44
Author(s): Morganna Costa Lima, Leila Rodrigues de Mendonça, Antônio Mauro Rezende, Raquel Medialdea-Carrera, Conceição Elidianne Aníbal-Silva, Matthew Demers, Leonardo D’Aiuto, Joel Wood, Kodavali V. Chowdari, Michael J. Griffiths, Antonio R. Lucena-Araújo, Manoel Barral‐Netto, Elisa de Almeida Neves Azevedo, Renan Willian Alves, Pablo Cantalice Santos Farias, Ernesto T. A. Marques, Priscila M. S. Castanha, Claire L. Donald, Alain Kohl, Vishwajit L. Nimgaonkar, Rafael Freitas Oliveira Franca
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2164-11-165

Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
Cited by: 53
Author(s): Thomas Neußer, Tino Polen, René Geißen, Rolf Wagner
Software Mentions: 3
Published: about 16 years ago

10.3389/fninf.2018.00052

BRANT: A Versatile and Extendable Resting-State fMRI Toolkit
Cited by: 49
Author(s): Kaibin Xu, Yong Liu, Yafeng Zhan, Jiaji Ren, Tianzi Jiang
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-49410-8

Spodoptera frugiperda transcriptional response to infestation by Steinernema carpocapsae
Cited by: 13
Author(s): Louise Huot, Simon C. George, Pierre-Alain Girard, Dany Séverac, Nicolas Nègre, Bernard Duvic
Software Mentions: 3
Published: over 6 years ago

10.3389/fnbeh.2014.00110

Medial prefrontal cortex: genes linked to bipolar disorder and schizophrenia have altered expression in the highly social maternal phenotype
Cited by: 21
Author(s): Brian E. Eisinger, Terri M. Driessen, Changjiu Zhao, Stephen C. Gammie
Software Mentions: 3
Published: about 12 years ago

10.3389/fnbeh.2014.00388

Addiction and reward-related genes show altered expression in the postpartum nucleus accumbens
Cited by: 31
Author(s): Changjiu Zhao, Brian E. Eisinger, Terri M. Driessen, Stephen C. Gammie
Software Mentions: 3
Published: over 11 years ago

10.3389/fcell.2021.692517

Distinct Gene Expression Patterns of Two Heat Shock Protein 70 Members During Development, Diapause, and Temperature Stress in the Freshwater Crustacean Daphnia magna
Cited by: 3
Author(s): Luxi Chen, Rocío Gómez, Linda C. Weiss
Software Mentions: 3
Published: almost 5 years ago

10.12688/f1000research.10750.2

General guidelines for biomedical software development
Cited by: 11
Author(s): Luís A. Bastião Silva, Rafael C. Jiménez, Niklas Blomberg, José Luís Oliveira
Software Mentions: 3
Published: almost 9 years ago

10.12688/f1000research.14612.2

eXamine: Visualizing annotated networks in Cytoscape
Cited by: 3
Author(s): Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2021.662843

Effect of the Expression of ELOVL5 and IGFBP6 Genes on the Metastatic Potential of Breast Cancer Cells
Cited by: 5
Author(s): С. В. Никулин, Г. С. Захарова, Andrey Poloznikov, M. P. Raigorodskaya, Daniel Wicklein, Udo Schumacher, Stepan Nersisyan, Jonas Bergquist, Georgy Bakalkin, Л. В. Астахова, Alexander G. Tonevitsky
Software Mentions: 3
Published: about 5 years ago

10.1186/1756-0500-3-255

Expression analysis of flavonoid biosynthesis genes during Arabidopsis thaliana silique and seed development with a primary focus on the proanthocyanidin biosynthetic pathway
Cited by: 48
Author(s): Christiane Katja Kleindt, Ralf Stracke, Marcus Frank, Bernd Weißhaar
Software Mentions: 3
Published: over 15 years ago

10.1186/1471-2164-15-754

Transcriptome profiling of natural dichromatism in the annual fishes Nothobranchius furzeri and Nothobranchius kadleci
Cited by: 21
Author(s): Enoch Ng’oma, Marco Groth, Roberto Ripa, Matthias Platzer, Alessandro Cellerino
Software Mentions: 3
Published: over 11 years ago

10.1242/dev.169367

Distal-less activates butterfly eyespots consistent with a reaction diffusion process
Cited by: 53
Author(s): Heidi Connahs, Sham Tlili, Jelle van Creij, Tricia Y. J. Loo, Tirtha Das Banerjee, Timothy E. Saunders, Antónia Monteiro
Software Mentions: 3
Published: over 7 years ago

10.1186/s12885-016-2936-3

Global DNA methylation profiling uncovers distinct methylation patterns of protocadherin alpha4 in metastatic and non-metastatic rhabdomyosarcoma
Cited by: 11
Author(s): Lucia Tombolan, Elena Poli, Paolo Martini, Angelica Zin, Caterina Millino, Beniamina Pacchioni, Barbara Celegato, Gianni Bisogno, Chiara Romualdi, Angelo Rosolen, Gerolamo Lanfranchi
Software Mentions: 3
Published: over 9 years ago

10.1080/22221751.2019.1637072

Papillomavirus can be transmitted through the blood and produce infections in blood recipients: Evidence from two animal models
Cited by: 28
Author(s): Nancy M. Cladel, Pengfei Jiang, Jingwei J. Li, Xuwen Peng, Timothy K. Cooper, Vladimır Majerčiak, Karla K. Balogh, Thomas J. Meyer, Sarah A. Brendle, Lynn R. Budgeon, Debra Shearer, Regina Munden, Maggie Cam, Raghavan Vallur, Neil D. Christensen, Zhi-Ming Zheng, Jiafen Hu
Software Mentions: 3
Published: over 7 years ago

10.1089/biores.2014.0053

Biological Effects Induced by Specific Advanced Glycation End Products in the Reconstructed Skin Model of Aging
Cited by: 31
Author(s): Hervé Piégay, Hélène Zucchi, Zhen Dai, David R. Sell, Christopher M. Strauch, Vincent M. Monnier, Daniel Asselineau
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0038602

Gene Expression Changes in the Septum: Possible Implications for MicroRNAs in Sculpting the Maternal Brain
Cited by: 19
Author(s): Changjiu Zhao, Michael C. Saul, Terri M. Driessen, Stephen C. Gammie
Software Mentions: 3
Published: almost 14 years ago

10.1155/2020/3041498

SCALEUS-FD: A FAIR Data Tool for Biomedical Applications
Cited by: 5
Author(s): Arnaldo Pereira, Rui Pedro Lopes, José Luís Oliveira
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2229-14-185

Genome-wide analysis reveals divergent patterns of gene expression during zygotic and somatic embryo maturation of Theobroma cacaoL., the chocolate tree
Cited by: 25
Author(s): Siela N. Maximova, Sergio Florez, Xiangling Shen, Nicolas Niemenak, Yufan Zhang, Wayne R. Curtis, Mark J. Guiltinan
Software Mentions: 3
Published: almost 12 years ago

10.1093/bioinformatics/bty742

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians
Cited by: 41
Author(s): K. Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur D.L. Kelpin, Mark de Haan, Tommy de Boer, Sido Haakma, Connor Stroomberg, Salome Scholtens, Gert-Jan van de Geijn, Eleonora A. M. Festen, Rinse K. Weersma, Morris A. Swertz
Software Mentions: 3
Published: almost 8 years ago

10.1007/s10664-019-09707-8

Search-based multi-vulnerability testing of XML injections in web applications
Cited by: 10
Author(s): Sadeeq Jan, Annibale Panichella, Andrea Arcuri, Lionel C. Briand
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.630187

CoExp: A Web Tool for the Exploitation of Co-expression Networks
Cited by: 13
Author(s): Sonia García-Ruiz, Ana Luisa Gil-Martínez, Alejandro Cisterna, Federico Jurado-Ruiz, Regina H. Reynolds, Nabec, Mark Cookson, John Hardy, Mina Ryten, Juan A. Botía
Software Mentions: 3
Published: over 5 years ago

10.3389/fninf.2018.00059

A Novel, Fast, Reliable, and Data-Driven Method for Simultaneous Single-Trial Mining and Amplitude—Latency Estimation Based on Proximity Graphs and Network Analysis
Cited by: 0
Author(s): Stavros I. Dimitriadis, Lisa Brindley, Lisa Helen Evans, David Linden, Krish Devi Singh
Software Mentions: 3
Published: over 7 years ago

10.1186/s12916-021-01962-1

Functional connectivity changes in cerebral small vessel disease - a systematic review of the resting-state MRI literature
Cited by: 22
Author(s): Maximilian Schulz, Caroline Malherbe, Bastian Cheng, Götz Thomalla, Eckhard Schlemm
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-61007-0

De novo transcriptome of the diatom Cylindrotheca closterium identifies genes involved in the metabolism of anti-inflammatory compounds
Cited by: 21
Author(s): Ali Murat Elagoz, Luca Ambrosino, Chiara Lauritano
Software Mentions: 3
Published: about 6 years ago

10.1186/1758-2946-3-18

AMBIT RESTful web services: an implementation of the OpenTox application programming interface
Cited by: 58
Author(s): Nina Jeliazkova, Vedrin Jeliazkov
Software Mentions: 3
Published: about 15 years ago

10.1186/2041-1480-3-11

COEUS: “semantic web in a box” for biomedical applications
Cited by: 37
Author(s): Pedro Lopes, José Luís Oliveira
Software Mentions: 3
Published: over 14 years ago

10.3390/jcm8111966

Connectome Analysis of Brain Functional Network Alterations in Depressive Patients with Suicidal Attempt
Cited by: 19
Author(s): Jun‐Cheng Weng, Yu-Syuan Chou, Yuan-Hsiung Tsai, Chun-Te Lee, Ming‐Hong Hsieh, Vincent Chin‐Hung Chen
Software Mentions: 3
Published: over 6 years ago

10.1093/jxb/ert234

Nitrogen metabolism of two contrasting poplar species during acclimation to limiting nitrogen availability
Cited by: 172
Author(s): Jie Luo, Hong Li, Tong‐Xian Liu, Andrea Polle, Changhui Peng, Zhibin Luo
Software Mentions: 3
Published: almost 13 years ago

10.1038/srep11148

Disrupted resting-state attentional networks in T2DM patients
Cited by: 47
Author(s): Wenqing Xia, Shaohua Wang, Hengyi Rao, Andrea M. Spaeth, Pin Wang, Yue Yang, Rong Huang, Rongrong Cai, Hao Sun
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-017-10245-w

REST, a master regulator of neurogenesis, evolved under strong positive selection in humans and in non human primates
Cited by: 21
Author(s): Alessandra Mozzi, Franca Rosa Guerini, Diego Forni, Andrea Saul Costa, Raffaello Nemni, Francesca Baglio, Monia Cabinio, Stefania Riva, Chiara Pontremoli, Mario Clerici, Manuela Sironi, Rachele Cagliani
Software Mentions: 3
Published: almost 9 years ago

10.18632/oncotarget.27693

Differentially expressed full-length, fusion and novel isoforms transcripts-based signature of well-differentiated keratinized oral squamous cell carcinoma
Cited by: 9
Author(s): Neetu Singh, Dinesh Kumar Sahu, Ratnesh Kumar Tripathi, Archana Mishra, Hari Shyam, Pratap Shankar, Mayank Jain, Nawazish Alam, Anil Kumar, Abhishek Mishra, Rebecca Chowdhry, Anjana Singh, Sudeep Gupta, Divya Mehrotra, Preeti Agarwal, Madhu Mati Goel, Arun Chaturvedi, Saurabh Agarwal, Manish Kumar Bajpai, Devendra K. Gupta, Madan Lal Brahma Bhatt, Ravi Kant
Software Mentions: 2
Published: almost 6 years ago

10.1002/hbm.24384

Focal application of accelerated iTBS results in global changes in graph measures
Cited by: 6
Author(s): Debby Klooster, Suzanne L. Franklin, René M.H. Besseling, Jaap F.A. Jansen, Karen Caeyenberghs, Romain Duprat, Albert P. Aldenkamp, A.J.A. de Louw, Paul Boon, Chris Baeken
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-07236-2

Integration of miRNA and mRNA expression profiles reveals microRNA-regulated networks during muscle wasting in cardiac cachexia
Cited by: 37
Author(s): Leonardo Nazário de Moraes, Geysson Javier Fernández, Ivan J. Vechetti, Paula Paccielli Freire, Rodrigo Wagner Alves de Souza, Rolando A R Villacis, Sílvia Regina Rogatto, Patrícia P. Reis, Maeli Dal-Pai-Silva, Robson Francisco Carvalho
Software Mentions: 2
Published: almost 9 years ago

10.1128/JVI.00876-19

Transcriptional Response of Ovine Lung to Infection with Jaagsiekte Sheep Retrovirus
Cited by: 12
Author(s): Anna Eleonora Karagianni, Deepali Vasoya, J. Finlayson, Henny Martineau, Ann R. Wood, Chris Cousens, Mark P. Dagleish, Michael Watson, David J. Griffiths
Software Mentions: 2
Published: over 6 years ago

10.1111/joa.12977

Altered haemodynamics causes aberrations in the epicardium
Cited by: 4
Author(s): Chrysostomos Perdios, Matthew Parnall, Kar Lai Pang, Siobhan Loughna
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-12092-1

De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential
Cited by: 51
Author(s): Chiara Lauritano, Danièle De Luca, Alberto Ferrarini, C. Avanzato, Andrea Minio, Francesco Esposito, Adrianna Ianora
Software Mentions: 2
Published: over 8 years ago

10.1186/1479-5876-10-186

Circulating miR-200c as a diagnostic and prognostic biomarker for gastric cancer
Cited by: 137
Author(s): Manuel Valladares‐Ayerbes, Margarita Reboredo, V. Medina-Villaamil, Pilar Iglesias-Díaz, María J. Lorenzo-Patiño, Mar Haz, Isabel Santamarina, Miguel Blanco, Juan Fernández‐Tajes, María Quindós, Alberto Carral, Angélica Figueroa, Luis Antón-Aparicio, Lourdes Calvo
Software Mentions: 2
Published: over 13 years ago

10.1155/2018/5045734

Antifibrotic Effect of Marine Ovothiol in an In Vivo Model of Liver Fibrosis
Cited by: 23
Author(s): Mariarita Brancaccio, Giuseppe D’Argenio, Vincenzo Lembo, Anna Palumbo, Immacolata Castellano
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-14075-8

Nutrient Loading Fosters Seagrass Productivity Under Ocean Acidification
Cited by: 27
Author(s): Chiara Ravaglioli, Chiara Lauritano, María Cristina Buia, Elena Balestri, Antonella Capocchi, Debora Fontanini, G. Pardi, Laura Tamburello, Gabriele Procaccini, Fabio Bulleri
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1009481

TcpC inhibits toll-like receptor signaling pathway by serving as an E3 ubiquitin ligase that promotes degradation of myeloid differentiation factor 88
Cited by: 6
Author(s): Jiaqi Fang, Qian Ou, Jun Pan, Dayong Zhang, Miao-Qi Qiu, Yue-Qi Li, Xiaohui Wang, Xue-Yu Yang, Zhe Chi, Wei Gao, Jing Guo, Thomas Miethke, Jianping Pan
Software Mentions: 2
Published: about 5 years ago

10.1002/hbm.25305

Predicting visual working memory with multimodal magnetic resonance imaging
Cited by: 11
Author(s): Xiaomei Yu, Ying Lin, Junji Ma, Jiehui Qian, Zijun Ke, Liangfang Li, Yangyang Yi, Jinbo Zhang, Cam‐CAN, Zhengjia Dai
Software Mentions: 2
Published: over 5 years ago

10.1016/j.pneurobio.2020.101790

MeCP2 mediates transgenerational transmission of chronic pain
Cited by: 10
Author(s): Wenjuan Tao, Changmao Chen, Yuping Wang, Wenjie Zhou, Yan Jin, Yu Mao, Haitao Wang, Likui Wang, Wen Xie, Xulai Zhang, Jie Li, Juan Li, Xiang-Yao Li, Zhen Quan Tang, Chenghua Zhou, Zhizhong Z. Pan, Zhi Zhang
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-24023-9

Toxigenic effects of two benthic diatoms upon grazing activity of the sea urchin: morphological, metabolomic and de novo transcriptomic analysis
Cited by: 25
Author(s): Nadia Ruocco, Susan Costantini, Valerio Zupo, Chiara Lauritano, Davide Caramiello, Adrianna Ianora, Alfredo Budillon, Giovanna Romano, Genoveffa Nuzzo, Giuliana d’Ippolito, Angelo Fontana, Maria Costantini
Software Mentions: 2
Published: about 8 years ago

10.1002/pro.3978

The <scp>BioGRID</scp> database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions
Cited by: 612
Author(s): Rose Oughtred, Jennifer Rust, Christie S. Chang, Bobby-Joe Breitkreutz, Chris Stark, Andrew Willems, Lorrie Boucher, Genie Leung, Nadine K. Kolas, Frederick Zhang, Sonam Dolma, Jasmin Coulombe-Huntington, Andrew Chatr‐aryamontri, Kara Dolinski, Mike Tyers
Software Mentions: 2
Published: over 5 years ago

10.1038/srep37617

Structural and Functional Connectivity of Default Mode Network underlying the Cognitive Impairment in Late-onset Depression
Cited by: 32
Author(s): Yingying Yin, Xiaofu He, Mingze Xu, Zhenghua Hou, Xiaopeng Song, Yuxiu Sui, Zhi Li, Wenhao Jiang, Yingying Yue, Yuqun Zhang, Yijun Liu, Yonggui Yuan
Software Mentions: 2
Published: over 9 years ago

10.1186/1758-2946-2-5

Towards interoperable and reproducible QSAR analyses: Exchange of datasets
Cited by: 39
Author(s): Ola Spjuth, Egon Willighagen, Rajarshi Guha, Martin Eklund, Jarl E. S. Wikberg
Software Mentions: 2
Published: almost 16 years ago

10.1093/jxb/erv285

TheIDA/IDA-LIKEandPIP/PIP-LIKEgene families inArabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide
Cited by: 64
Author(s): Ane Kjersti Vie, Javad Najafi, Bin Liu, Per Winge, Melinka A. Butenko, Karina S. Hornslien, Robert P. Kumpf, Reidunn B. Aalen, Atle M. Bones, Tore Brembu
Software Mentions: 2
Published: almost 11 years ago

10.1186/1465-9921-14-85

Carcinoembryonic antigen (CEA)-related cell adhesion molecules are co-expressed in the human lung and their expression can be modulated in bronchial epithelial cells by non-typable Haemophilus influenzae, Moraxella catarrhalis, TLR3, and type I and II interferons
Cited by: 59
Author(s): Esther Klaile, Tilman E. Klassert, Inka Scheffrahn, Müller Mm, A Heinrich, Kerstin A. Heyl, Hendrik Dienemann, Christian Grünewald, Robert Bals, Bernhard B. Singer, Hortense Slevogt
Software Mentions: 2
Published: almost 13 years ago

10.1038/srep39049

Interactomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation
Cited by: 17
Author(s): Namgyu Lee, Sung Jin Park, Ghazal Haddad, Dae-Kyum Kim, Seon‐Min Park, Sang Ki Park, Kwan Yong Choi
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42278

Linking gene expression to productivity to unravel long- and short-term responses of seagrasses exposed to CO2 in volcanic vents
Cited by: 20
Author(s): Irene Olivé, João Silva, Chiara Lauritano, Monya M. Costa, Miriam Ruocco, Gabriele Procaccini, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42890

Depth-specific fluctuations of gene expression and protein abundance modulate the photophysiology in the seagrass Posidonia oceanica
Cited by: 47
Author(s): Gabriele Procaccini, Miriam Ruocco, Lázaro Marín-Guirao, Emanuela Dattolo, Christophe Brunet, Daniela D’Esposito, Chiara Lauritano, Silvia Mazzuca, Ilia Anna Serra, Letizia Bernardo, Amalia Piro, Sven Beer, Mats Björk, Martin Gullström, Pimchanok Buapet, Lina M. Rasmusson, Paulo Felisberto, Sylvie Gobert, John W. Runcie, João Silva, Irene Olivé, Monya M. Costa, Isabel Barrote, Rui Santos
Software Mentions: 2
Published: over 9 years ago

10.1002/hbm.25429

Taking the body off the mind: Decreased functional connectivity between somatomotor and default‐mode networks following Floatation‐REST
Cited by: 12
Author(s): Obada Al Zoubi, Masaya Misaki, Jerzy Bodurka, Rayus Kuplicki, Colleen Wohlrab, William A. Schoenhals, Hazem H. Refai, Sahib S. Khalsa, Murray B. Stein, Martin P. Paulus, Justin S. Feinstein
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/erw039

Prioritizing quantitative trait loci for root system architecture in tetraploid wheat
Cited by: 151
Author(s): Marco Maccaferri, Walid M. El-Feki, Ghasemali Nazemi, Silvio Salvi, Maria Angela Canè, Maria Chiara Colalongo, Sandra Stefanelli, Roberto Tuberosa
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/erv516

Kresoxim-methyl primesMedicago truncatulaplants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment
Cited by: 28
Author(s): Panagiota Filippou, Chrystalla Antoniou, Toshihiro Obata, Katrien Van Der Kelen, Vaggelis Harokopos, Loukas Kanetis, Vassilis Aidinis, Frank Van Breusegem, Alisdair R. Fernie, Vasileios Fotopoulos
Software Mentions: 2
Published: over 10 years ago

10.1093/jxb/erx168

The IDA-LIKE peptides IDL6 and IDL7 are negative modulators of stress responses in Arabidopsis thaliana
Cited by: 28
Author(s): Ane Kjersti Vie, Javad Najafi, Per Winge, Ester Cattan, Michael Wrzaczek, Jaakko Kangasjärvi, Gad Miller, Tore Brembu, Atle M. Bones
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.17944

Disrupted functional connectivity between perirhinal and parahippocampal cortices with hippocampal subfields in patients with mild cognitive impairment and Alzheimer's disease
Cited by: 4
Author(s): Yu Sun, Yafei Wang, Jiaming Lu, Rengyuan Liu, Christopher G. Schwarz, Hui Zhao, Yue Zhang, Lu Xu, Bin Zhu, Bing Zhang, Bing Liu, Shui Wan, Yun Xu
Software Mentions: 2
Published: about 9 years ago

10.22074/cellj.2020.6193

Repression of TGF-β Signaling in Breast Cancer Cells by miR-302/367 Cluster.
Cited by: 4
Author(s): Mona Ahmadalizadeh Khanehsar, Moslem Hoseinbeyki, Masoumeh Fakhr Taha, Arash Javeri
Software Mentions: 2
Published: over 6 years ago

10.22074/cellj.2020.6582

Cardiac Differentiation of Adipose Tissue-Derived Stem Cells Is Driven by BMP4 and bFGF but Counteracted by 5-Azacytidine and Valproic Acid.
Cited by: 3
Author(s): Sanaz Hasani, Arash Javeri, Asadollah Asadi, Masoumeh Fakhr Taha
Software Mentions: 2
Published: over 5 years ago

10.22074/cellj.2021.7139

Long-Term Effects of Hippocampal Low-Frequency Stimulation on Pro-Inflammatory Factors and Astrocytes Activity in Kindled Rats.
Cited by: 1
Author(s): Razieh Rohani, Abbas Aliaghaei, Mohammad‐Amin Abdollahifar, Yousef Sadeghi, Leila Zare, Samaneh Dehghan, Mohammad Hassan Heidari
Software Mentions: 2
Published: about 5 years ago

10.1093/texcom/tgab035

Behavioral and Neural Signatures of Visual Imagery Vividness Extremes: Aphantasia versus Hyperphantasia
Cited by: 46
Author(s): Fraser Milton, Jon Fulford, Carla Dance, James Gaddum, Brittany Heuerman-Williamson, Kealan Jones, Kathryn F Knight, Matthew MacKisack, Crawford Winlove, Adam Zeman
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0077914

Regional Brain Atrophy and Functional Connectivity Changes Related to Fatigue in Multiple Sclerosis
Cited by: 63
Author(s): Álvaro Javier Cruz-Gómez, Noelia Ventura‐Campos, Antonio Belenguer, César Ávila, Cristina Forn
Software Mentions: 2
Published: over 12 years ago

10.1186/s12885-016-2274-5

Snail-induced epithelial-to-mesenchymal transition of MCF-7 breast cancer cells: systems analysis of molecular changes and their effect on radiation and drug sensitivity
Cited by: 36
Author(s): Roman Mezencev, Lilya V. Matyunina, Neda Jabbari, John F. McDonald
Software Mentions: 2
Published: about 10 years ago

10.1038/s41419-020-2269-7

Loss of RE-1 silencing transcription factor accelerates exocrine damage from pancreatic injury
Cited by: 12
Author(s): J. W. Bray, Ola A. Elgamal, Jinmai Jiang, Lais S. Wright, Dhruvitkumar S. Sutaria, Mohamed Badawi, Madeline G. Borcyk, Xiuli Liu, Kristianna M. Fredenburg, Martha Campbell-Thompson, Thomas D. Schmittgen
Software Mentions: 2
Published: over 6 years ago

10.1039/c8cs00040a

Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments
Cited by: 109
Author(s): Pim W. J. M. Frederix, Ilias Patmanidis, Siewert J. Marrink
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-12-423

Testing the importance of jasmonate signalling in induction of plant defences upon cabbage aphid (Brevicoryne brassicae) attack
Cited by: 57
Author(s): Anna Kuśnierczyk, Diem Hong Tran, Per Winge, Tommy S Jørstad, John C. Reese, Joanna Troczyńska, Atle M. Bones
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0040266

Functional Feeds Reduce Heart Inflammation and Pathology in Atlantic Salmon (Salmo salar L.) following Experimental Challenge with Atlantic Salmon Reovirus (ASRV)
Cited by: 55
Author(s): Laura Martínez-Rubio, Sofía Morais, Øystein Evensen, Simón Wadsworth, Kari Ruohonen, Jose L. González Vecino, J.G. Bell, Douglas R. Tocher
Software Mentions: 2
Published: over 13 years ago

10.18632/aging.102846

Baicalin ameliorates neuropathology in repeated cerebral ischemia-reperfusion injury model mice by remodeling the gut microbiota
Cited by: 42
Author(s): Jianfeng Liu, Tianhua Zhang, Yingying Wang, Chengqing Si, Xudong Wang, Ruitao Wang, Zhonghua Lv
Software Mentions: 2
Published: over 6 years ago

10.3390/antiox9080662

Neuroprotective Effect of HIF Prolyl Hydroxylase Inhibition in an In Vitro Hypoxia Model
Cited by: 18
Author(s): Maria Savyuk, Mikhail Krivonosov, Tatiana A. Mishchenko, Irina G. Gazaryan, Mikhail Ivanchenko, A. Yu. Khristichenko, Andrey Poloznikov, Dmitry M. Hushpulian, С. В. Никулин, E. A. Tonevitsky, Guzal Abuzarova, Еlena V. Mitroshina, Maria V. Vedunova
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-017-3989-7

A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery
Cited by: 30
Author(s): Maryam Moazzzam Jazi, Seyed Mahdi Seyedi, Esmaeil Ebrahimie, Mansour Ebrahimi, Gianluca De Moro, Christopher Botanga
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0162828

The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia
Cited by: 6
Author(s): Satoshi Mizuno, Soichi Ogishima, Hidekazu Nishigori, Daniel Jamieson, Karin Verspoor, Hiroshi Tanaka, Nobuo Yaegashi, Jun Nakaya
Software Mentions: 2
Published: over 9 years ago

Projects: cran: REST

Science Score: 75/100

Penalties:

Papers Mentioning REST 1,757