Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: PSCBS
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PSCBS
Analysis of Parent-Specific DNA Copy Numbers
33 versions
Latest release: about 3 years ago
4 dependent packages
603 downloads last month
Papers Mentioning PSCBS 6
10.1186/s13059-016-0999-8
Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxiaCited by: 64
Author(s): Syed Haider, Alan McIntyre, Ruud G.P.M. van Stiphout, Laura Winchester, Simon Wigfield, Adrian L. Harris, Francesca M. Buffa
Software Mentions: 10
Published: over 8 years ago
10.1093/bioinformatics/btu436
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing dataCited by: 95
Author(s): Valentina Boeva, Tatiana Popova, Maxime Lienard, Sébastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes
Software Mentions: 3
Published: over 10 years ago
10.1016/j.cell.2021.03.009
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomesCited by: 210
Author(s): Stefan C. Dentro, Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar, Kaixian Yu, Yulia Rubanova, Geoff Macintyre, Jonas Demeulemeester, Ignacio Vázquez-García, Kortine Kleinheinz, Dimitri Livitz, Salem Malikić, Nilgun Donmez, Subhajit Sengupta, Pavana Anur, Clemency Jolly, Marek Cmero, Daniel Rosebrock, Steven E. Schumacher, Yu Fan, Matthew Fittall, Ruben M. Drews, Xiaotong Yao, Thomas B.K. Watkins, Ju Hee Lee, Matthias Schlesner, Hongtu Zhu, David J. Adams, Nicholas McGranahan, Charles Swanton, Gad Getz, Paul C. Boutros, Marcin Imieliński, Rameen Beroukhim, S. Cenk Şahinalp, Yuan Ji, Martin Peifer, Iñigo Martincorena, Florian Markowetz, Ville Mustonen, Ke Yuan, Moritz Gerstung, Paul T. Spellman, Wenyi Wang, Quaid Morris, David C. Wedge, Peter Van Loo, Santiago González, David D.L. Bowtell, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Roland Eils, Dale W. Garsed, Gavin Ha, Lara Jerman, Henry Lee-Six, Thomas J. Mitchell, Layla Oesper, Myron Peto, Benjamin J. Raphael, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Lincoln Stein, Oliver Spiro, Shankar Vembu, David A. Wheeler, Tsun-Po Yang
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2105-14-84
Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samplesCited by: 3
Author(s): David Mosén-Ansorena, Ana M. Aransay
Software Mentions: 2
Published: almost 12 years ago
10.1186/s13029-016-0060-z
PureCN: copy number calling and SNV classification using targeted short read sequencingCited by: 89
Author(s): Markus Riester, Angad Singh, A. Rose Brannon, Kun Yu, Catarina D. Campbell, Derek Y. Chiang, Michael Morrissey
Software Mentions: 2
Published: about 8 years ago
10.1038/srep36158
Rawcopy: Improved copy number analysis with Affymetrix arraysCited by: 53
Author(s): Markus Mayrhofer, Björn Viklund, Anders Isaksson
Software Mentions: 1
Published: about 8 years ago