Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PSCBS

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PSCBS

Analysis of Parent-Specific DNA Copy Numbers
33 versions
Latest release: almost 3 years ago
4 dependent packages
603 downloads last month

Papers Mentioning PSCBS 6

Genomic alterations underlie a pan-cancer metabolic shift associated with tumour hypoxia
Cited by: 64
Author(s): Syed Haider, Alan McIntyre, Ruud G.P.M. van Stiphout, Laura Winchester, Simon Wigfield, Adrian L. Harris, Francesca M. Buffa
Software Mentions: 10
Published: over 8 years ago

10.1093/bioinformatics/btu436

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data
Cited by: 95
Author(s): Valentina Boeva, Tatiana Popova, Maxime Lienard, Sébastien Toffoli, Maud Kamal, Christophe Le Tourneau, David Gentien, Nicolas Servant, Pierre Gestraud, Thomas Rio Frio, Philippe Hupé, Emmanuel Barillot, Jean-François Laes
Software Mentions: 3
Published: about 10 years ago

10.1016/j.cell.2021.03.009

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Cited by: 210
Author(s): Stefan C. Dentro, Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar, Kaixian Yu, Yulia Rubanova, Geoff Macintyre, Jonas Demeulemeester, Ignacio Vázquez-García, Kortine Kleinheinz, Dimitri Livitz, Salem Malikić, Nilgun Donmez, Subhajit Sengupta, Pavana Anur, Clemency Jolly, Marek Cmero, Daniel Rosebrock, Steven E. Schumacher, Yu Fan, Matthew Fittall, Ruben M. Drews, Xiaotong Yao, Thomas B.K. Watkins, Ju Hee Lee, Matthias Schlesner, Hongtu Zhu, David J. Adams, Nicholas McGranahan, Charles Swanton, Gad Getz, Paul C. Boutros, Marcin Imieliński, Rameen Beroukhim, S. Cenk Şahinalp, Yuan Ji, Martin Peifer, Iñigo Martincorena, Florian Markowetz, Ville Mustonen, Ke Yuan, Moritz Gerstung, Paul T. Spellman, Wenyi Wang, Quaid Morris, David C. Wedge, Peter Van Loo, Santiago González, David D.L. Bowtell, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Roland Eils, Dale W. Garsed, Gavin Ha, Lara Jerman, Henry Lee-Six, Thomas J. Mitchell, Layla Oesper, Myron Peto, Benjamin J. Raphael, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Lincoln Stein, Oliver Spiro, Shankar Vembu, David A. Wheeler, Tsun-Po Yang
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-14-84

Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples
Cited by: 3
Author(s): David Mosén-Ansorena, Ana M. Aransay
Software Mentions: 2
Published: over 11 years ago

10.1186/s13029-016-0060-z

PureCN: copy number calling and SNV classification using targeted short read sequencing
Cited by: 89
Author(s): Markus Riester, Angad Singh, A. Rose Brannon, Kun Yu, Catarina D. Campbell, Derek Y. Chiang, Michael Morrissey
Software Mentions: 2
Published: almost 8 years ago

10.1038/srep36158

Rawcopy: Improved copy number analysis with Affymetrix arrays
Cited by: 53
Author(s): Markus Mayrhofer, Björn Viklund, Anders Isaksson
Software Mentions: 1
Published: almost 8 years ago