cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-56257-6

High resolution structural and functional analysis of a hemopexin motif protein from Dolichos
Cited by: 0
Author(s): Sarita Chandan Sharma, Ashish Kumar, Sharad Vashisht, Dinakar M. Salunke
Software Mentions: 2
Published: over 6 years ago

10.1063/1.4948539

Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate
Cited by: 4
Author(s): Heidi B. Cao, Kemin Tan, Fengbin Wang, L. Bigelow, Ragothaman M. Yennamalli, R. Jedrzejczak, G. Babnigg, C.A. Bingman, A. Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-36839-6

Search for efficient inhibitors of myotoxic activity induced by ophidian phospholipase A2-like proteins using functional, structural and bioinformatics approaches
Cited by: 23
Author(s): Daniela P. Marchi-Salvador, Filomena Cardoso, Antoniel Augusto Severo Gomes, Walter Luís Garrido Cavalcante, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-29498-0

Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica
Cited by: 8
Author(s): Hajime Unno, Azusa Nakamura, Shigeo Mori, Shuichiro Goda, Kensei Yamaguchi, Keiko Hiemori, Hiroaki Tateno, Tomomitsu Hatakeyama
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-37806-x

Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis
Cited by: 8
Author(s): Noriyuki Ogawa, Takehide Kimura, Fumi Umehara, Yuki Katayama, Go Nagai, Keiko Suzuki, Kazuo Aisaka, Yukie Maruyama, Takafumi Itoh, Wataru Hashimoto, Kousaku Murata, Michio Ichimura
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-27118-5

Structural insights into the stimulation of S. pombe Dnmt2 catalytic efficiency by the tRNA nucleoside queuosine
Cited by: 21
Author(s): Sven Johannsson, Piotr Neumann, Alexander Wulf, Luisa M. Welp, Hans‐Dieter Gerber, Matthias Krüll, Ulf Diederichsen, Henning Urlaub, Ralf Ficner
Software Mentions: 2
Published: about 8 years ago

10.1107/S0907444912039042

Structure of the catalytic domain of theSalmonellavirulence factor SseI
Cited by: 16
Author(s): Shyam S. Bhaskaran, C. Erec Stebbins
Software Mentions: 2
Published: almost 14 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-25361-4

NADH/NADPH bi-cofactor-utilizing and thermoactive ketol-acid reductoisomerase from Sulfolobus acidocaldarius
Cited by: 12
Author(s): Chin‐Yu Chen, Tzu‐Ping Ko, Kuan-Fu Lin, Bo‐Lin Lin, Chun‐Hsiang Huang, Cheng‐Hung Chiang, Jia‐Cherng Horng
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: almost 11 years ago

10.1107/S1399004715018519

Sent packing: protein engineering generates a new crystal form ofPseudomonas aeruginosaDsbA1 with increased catalytic surface accessibility
Cited by: 5
Author(s): Róisín M. McMahon, M. Coincon, Stephanie Tay, Begoña Heras, Craig J. Morton, M.J. Scanlon, Jennifer L. Martin
Software Mentions: 2
Published: over 10 years ago

10.1186/s12859-014-0434-7

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions
Cited by: 3
Author(s): Padmaja Natarajan, Marco Punta, Abhinav Kumar, Andrew Yeh, Adam Godzik, L. Aravind
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2091-12-59

Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins
Cited by: 8
Author(s): Bjorn Vergauwen, Ruben Van der Meeren, Ann Dansercoer, Savvas N. Savvides
Software Mentions: 2
Published: over 15 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: over 11 years ago

10.1186/s12915-017-0372-8

Ion- and water-binding sites inside an occluded hourglass pore of a trimeric intracellular cation (TRIC) channel
Cited by: 4
Author(s): Xiaomin Ou, Jing Guo, Long Wang, Hongxin Yang, Xiuying Liu, Jianyuan Sun, Zhongfan Liu
Software Mentions: 2
Published: over 9 years ago

10.1107/S1399004715017927

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines
Cited by: 104
Author(s): U. Zander, Gleb Bourenkov, А. Н. Попов, Daniele de Sanctis, Olof Svensson, A.A. McCarthy, Ekaterina Round, Valentin Gordeliy, Christoph Mueller-Dieckmann, Gordon A. Leonard
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12915-019-0698-5

Crystal structure of diamondback moth ryanodine receptor Repeat34 domain reveals insect-specific phosphorylation sites
Cited by: 18
Author(s): Tong Xu, Zhiguang Yuchi
Software Mentions: 2
Published: almost 7 years ago

10.1107/S0907444911014302

Structure-based design of a disulfide-linked oligomeric form of the simian virus 40 (SV40) large T antigen DNA-binding domain
Cited by: 7
Author(s): Gretchen Meinke, Paul J. Phelan, Amélie Fradet-Turcotte, Jacques Archambault, Peter A. Bullock
Software Mentions: 2
Published: about 15 years ago

10.1186/1741-7007-9-48

Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1
Cited by: 49
Author(s): Alexei Korennykh, Pascal F. Egea, А.A. Коростелев, J. Finer-Moore, Robert M. Stroud, Chao Zhang, Kevan M. Shokat, Peter Walter
Software Mentions: 2
Published: about 15 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: about 13 years ago

10.1038/s41598-018-28584-7

Structural and functional characterization of suramin-bound MjTX-I from Bothrops moojeni suggests a particular myotoxic mechanism
Cited by: 24
Author(s): Daniela P. Marchi-Salvador, Thiago R. Dreyer, Antoniel Augusto Severo Gomes, Walter Luís Garrido Cavalcante, Jorge M. Santos, César A. Gandin, Mário de Oliveira Neto, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0188005

Crystal structures of ternary complexes of archaeal B-family DNA polymerases
Cited by: 36
Author(s): H.M. Kropp, Karin Betz, Johannes Wirth, Kay Diederichs, Andreas Marx
Software Mentions: 2
Published: over 8 years ago

10.1186/1756-0500-5-626

Crystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse
Cited by: 8
Author(s): Sergei P. Boudko, Yoshihiro Ishikawa, Thomas F. Lerch, Jay C. Nix, Michael S. Chapman, Hans Peter Bächinger
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-018-31808-5

Copper mediated amyloid-β binding to Transthyretin
Cited by: 24
Author(s): Lidia Ciccone, Carole Fruchart-Gaillard, Gilles Mourier, Martin Savko, Susanna Nencetti, Elisabetta Orlandini, Denis Servent, E.A. Stura, William Shepard
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-34984-6

Tracing whale myoglobin evolution by resurrecting ancient proteins
Cited by: 21
Author(s): Yasuhiro Isogai, Hiroshi Imamura, S. Nakae, Tetsuya Sumi, Ken Takahashi, Taro Nakagawa, Antonio Tsuneshige, Tomoyuki Shirai
Software Mentions: 2
Published: almost 8 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-019-41300-3

An engineered GH1 β-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials
Cited by: 33
Author(s): Clelton A. Santos, M.A.B. Morais, Oliver M. Terrett, Jan J. Lyczakowski, L.M. Zanphorlin, Jaire A. Ferreira-Filho, C.C.C. Tonoli, Mário Tyago Murakami, Paul Dupree, Anete Pereira de Souza
Software Mentions: 2
Published: over 7 years ago

10.1186/s12900-015-0030-8

Crystal structure and biophysical characterization of the nucleoside diphosphate kinase from Leishmania braziliensis
Cited by: 6
Author(s): P.S. Vieira, P.O. Giuseppe, Mário Tyago Murakami, Arthur Henrique Cavalcante de Oliveira
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-019-46230-8

Structural characterization of life-extending Caenorhabditis elegans Lipid Binding Protein 8
Cited by: 8
Author(s): Matthew Tillman, Manoj Khadka, Jonathon Duffy, Meng C. Wang, Eric A. Ortlund
Software Mentions: 2
Published: about 7 years ago

10.1038/s41422-020-0319-4

Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis
Cited by: 48
Author(s): Guangli Huang, Yanqing Zhang, Xinhui Zhu, Chao Zeng, Qifan Wang, Qiang Zhou, Qinghua Tao, Minhao Liu, Jianlin Lei, Chuangye Yan, Yigong Shi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-51095-y

The C-terminal region of human plasma fetuin-B is dispensable for the raised-elephant-trunk mechanism of inhibition of astacin metallopeptidases
Cited by: 6
Author(s): Tibisay Guevara, Hagen Körschgen, Anna Cuppari, C. Schmitz, Michael Kuske, Irene Yiallouros, Julia Floehr, Willi Jahnen‐Dechent, Walter Stöcker, F. Xavier Gomis‐Rüth
Software Mentions: 2
Published: almost 7 years ago

10.3390/cells8060570

An Emerin LEM-Domain Mutation Impairs Cell Response to Mechanical Stress
Cited by: 12
Author(s): Nada Essawy, Camille Samson, Ambre Petitalot, Sophie Moog, Anne Bigot, Isaline Herrada, Agathe Marcelot, Ana-Andreea Arteni, Catherine Coirault, Sophie Zinn‐Justin
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-52964-2

Structures of GapR reveal a central channel which could accommodate B-DNA
Cited by: 9
Author(s): M.J. Tarry, C. Harmel, James Taylor, Gregory T. Marczynski, T.M. Schmeing
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56135-1

Shortening injection matrix for serial crystallography
Cited by: 29
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: over 6 years ago

10.1186/1472-6807-12-13

Crystal structure of the Yersinia enterocolitica type III secretion chaperone SycD in complex with a peptide of the minor translocator YopD
Cited by: 25
Author(s): Madeleine Schreiner, Hartmut H. Niemann
Software Mentions: 2
Published: over 14 years ago

10.1186/1472-6807-7-45

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Cited by: 35
Author(s): Norbert Schormann, Alexei Grigorian, Alexandra B. Samal, Krishnan Raman, Lawrence J. DeLucas, Debasish Chattopadhyay
Software Mentions: 2
Published: about 19 years ago

10.1038/s41598-020-57419-7

Conformational changes in Apolipoprotein N-acyltransferase (Lnt)
Cited by: 6
Author(s): B. Wiseman, Martin Högbom
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: over 10 years ago

10.1186/s12900-014-0024-y

Structural insights into Escherichia coli polymyxin B resistance protein D with X-ray crystallography and small-angle X-ray scattering
Cited by: 9
Author(s): Hang-Hyun Jo, Eui Young Jeong, Jinseong Jeon, Changill Ban
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-020-62548-0

Structural basis for substrate and product recognition in human phosphoglucomutase-1 (PGM1) isoform 2, a member of the α-d-phosphohexomutase superfamily
Cited by: 9
Author(s): Paul Hoff Backe, Jon K. Laerdahl, Lene Svendsen Kittelsen, Bjørn Dalhus, Lars Mørkrid, Magnar Bjørås
Software Mentions: 2
Published: over 6 years ago

10.1186/1472-6807-14-17

Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
Cited by: 36
Author(s): Catherine Leettola, Mary Jane Knight, Duilio Cascio, Sigrid Hoffman, James U. Bowie
Software Mentions: 2
Published: about 12 years ago

10.1038/s41598-019-39020-9

Polyacrylamide injection matrix for serial femtosecond crystallography
Cited by: 36
Author(s): Jaehyun Park, Sehan Park, Jang Woo Kim, Gisu Park, Yunje Cho, Ki Hyun Nam
Software Mentions: 2
Published: over 7 years ago

10.1107/S139900471501857X

Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Cited by: 50
Author(s): Takanori Nakane, Changyong Song, Mamoru Suzuki, Eriko Nango, Jun Kobayashi, Tetsuya Masuda, Shiro Inoue, Eiichi Mizohata, Toru Nakatsu, Tomoyuki Tanaka, Rie Tanaka, Tatsuro Shimamura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, So Iwata, Michihiro Sugahara
Software Mentions: 2
Published: over 10 years ago

10.1107/S0907444912040590

Nearest-cell: a fast and easy tool for locating crystal matches in the PDB
Cited by: 13
Author(s): Varun Ramraj, Gwyndaf Evans, Jonathan M. Diprose, Robert Esnouf
Software Mentions: 2
Published: almost 14 years ago

10.1186/1472-6807-12-7

Crystal structure of a new benzoic acid inhibitor of influenza neuraminidase bound with a new tilt induced by overpacking subsite C6
Cited by: 10
Author(s): Lalitha Venkatramani, Eric S. Johnson, Gundurao Kolavi, Gillian M. Air, Wayne J. Brouillette, Blaine H. M. Mooers
Software Mentions: 2
Published: over 14 years ago

10.1107/S0021889811041161

iotbx.cif: a comprehensive CIF toolbox
Cited by: 539
Author(s): Richard J. Gildea, Luc J. Bourhis, Oleg V. Dolomanov, Ralf W. Grosse‐Kunstleve, Horst Puschmann, Paul D. Adams, Judith A. K. Howard
Software Mentions: 2
Published: almost 15 years ago

10.1186/1472-6807-13-30

Crystal structure of the γ-hydroxymuconic semialdehyde dehydrogenase from Pseudomonas sp. strainWBC-3, a key enzyme involved in para-Nitrophenol degradation
Cited by: 3
Author(s): Jing Su, Cong Zhang, Junjie Zhang, Tian‐Ran Wei, Deyu Zhu, Ning‐Yi Zhou, Lin Gu
Software Mentions: 2
Published: over 12 years ago

10.1107/S090744491302252X

Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2
Cited by: 53
Author(s): Naoki Horikoshi, Koichi Sato, Keisuke Shimada, Yasuhiro Arimura, Akihisa Osakabe, Hiroaki Tachiwana, Yoko Hayashi‐Takanaka, W. Iwasaki, Wataru Kagawa, Masahiko Harata, Hiroshi Kimurâ, Hitoshi Kurumizaka
Software Mentions: 2
Published: over 12 years ago

10.1042/BCJ20160806

Neisseria meningitidis factor H-binding protein bound to monoclonal antibody JAR5: implications for antibody synergy
Cited by: 18
Author(s): E. Malito, Paola Lo Surdo, Daniele Veggi, Laura Santini, Heather Stefek, Brunella Brunelli, Enrico Luzzi, Matthew J. Bottomley, Peter T. Beernink, María Scarselli
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2018.01737

Expanding the Plant GSTome Through Directed Evolution: DNA Shuffling for the Generation of New Synthetic Enzymes With Engineered Catalytic and Binding Properties
Cited by: 10
Author(s): Evangelia Chronopoulou, Anastassios C. Papageorgiou, Farid S. Ataya, Irini Nianiou-Obeidat, Panagiotis Madesis, Nikolaos E. Labrou
Software Mentions: 2
Published: over 7 years ago

10.1042/BCJ20200368

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences
Cited by: 8
Author(s): Izaak N Beck, B. F. Usher, Hannah G Hampton, Peter C. Fineran, Tim R. Blower
Software Mentions: 2
Published: about 6 years ago

10.1107/S1399004714018732

Structural basis for the recognition of muramyltripeptide byHelicobacter pyloriCsd4, a<scp>D</scp>,<scp>L</scp>-carboxypeptidase controlling the helical cell shape
Cited by: 19
Author(s): Hyoun Sook Kim, Jieun Kim, Ha Na Im, Doo Ri An, Mijoon Lee, Dušan Hesek, Shahriar Mobashery, Jin Young Kim, Kun Cho, Hye Jin Yoon, Byung Woo Han, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-020-78926-7

The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata
Cited by: 3
Author(s): Kenichi Kamata, Kimihiko Mizutani, Katsuya Takahashi, Roberta Marchetti, Alba Silipo, Christine Addy, Sam-Yong Park, Yuki Fujii, Hideaki Fujita, Tsuyoshi Konuma, Takahisa Ikegami, Yasuhiro Ozeki, J.R.H. Tame
Software Mentions: 2
Published: over 5 years ago

10.1107/S1399004715000152

Structure of Csd3 fromHelicobacter pylori, a cell shape-determining metallopeptidase
Cited by: 17
Author(s): Doo Ri An, Hyoun Sook Kim, Jieun Kim, Ha Na Im, Hye Jin Yoon, Ji Young Yoon, Jun Young Jang, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-021-84373-9

A SPRY1 domain cardiac ryanodine receptor variant associated with short-coupled torsade de pointes
Cited by: 8
Author(s): Zahia Touat-Hamici, Malorie Blancard, Ruijing Ma, Lei Lin, Yasmine Iddir, Isabelle Denjoy, Antoine Leenhardt, Zhiguang Yuchi, Pascale Guicheney
Software Mentions: 2
Published: over 5 years ago

10.1107/S2053230X15015939

An active site–tail interaction in the structure of hexahistidine-tagged Thermoplasma acidophilum citrate synthase
Cited by: 7
Author(s): Jesse Murphy, Stefano Donini, T.J. Kappock
Software Mentions: 2
Published: almost 11 years ago

10.1042/BCJ20180867

Solution structures and biophysical analysis of full-length group A PAKs reveal they are monomeric and auto-inhibited in cis
Cited by: 10
Author(s): F.J. Sorrell, Lena Marie Kilian, J.M. Elkins
Software Mentions: 2
Published: over 7 years ago

10.1107/S1399004715001443

Structure of the N-terminal domain of the protein Expansion: an `Expansion' to the Smad MH2 fold
Cited by: 8
Author(s): Mads Beich-Frandsen, Eric Aragón, Marta Llimargas, J. Benach, Antoni Riéra, Joan Pous, María J. Macias
Software Mentions: 2
Published: over 11 years ago

10.3389/fphys.2013.00320

The N-terminal cytoplasmic region of NCBE displays features of an intrinsic disordered structure and represents a novel target for specific drug screening
Cited by: 3
Author(s): Kaare Bjerregaard-Andersen, Harmonie Perdreau‐Dahl, Hanne Guldsten, Jeppe Prætorius, Jan K. Jensen, J. Preben Morth
Software Mentions: 2
Published: over 13 years ago

10.1107/S2053230X16017891

The crystal structure of the endoglucanase Cel10, a family 8 glycosyl hydrolase fromKlebsiella pneumoniae
Cited by: 9
Author(s): Ayman Attigani, Lifang Sun, Qing Wang, Yadan Liu, Ding-Ping Bai, Shengping Li, Xiaohong Huang
Software Mentions: 2
Published: over 9 years ago

10.1021/acs.biochem.1c00258

Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag
Cited by: 62
Author(s): Jonas Wilhelm, Stefanie F. Kühn, Mirosław Tarnawski, Guillaume Gotthard, Jana Tünnermann, Timo Tänzer, Iuliia A. Karpenko, Nicole Mertes, Lin Xue, Ulrike Uhrig, Jochen Reinstein, Julien Hiblot, Kai Johnsson
Software Mentions: 2
Published: about 5 years ago

10.3389/fphys.2017.00202

Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases
Cited by: 26
Author(s): Dorota Focht, Tristan I. Croll, Bjørn Panyella Pedersen, Poul Nissen
Software Mentions: 2
Published: over 9 years ago

10.1016/j.bbabio.2018.03.014

Structure of the NDH-2 – HQNO inhibited complex provides molecular insight into quinone-binding site inhibitors
Cited by: 19
Author(s): J. Petri, Yosuke Shimaki, Wanting Jiao, Hannah R. Bridges, Euan R. Russell, E.J. Parker, D. Aragão, Gregory M. Cook, Yoshio Nakatani
Software Mentions: 2
Published: about 8 years ago

10.1107/S1399004714022755

Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi
Cited by: 33
Author(s): Elena Fernández‐Fueyo, Sandra Acebes, Francisco J. Ruíz-Dueñas, Marı́a Jesús Martı́nez, Antonio Romero, F.J. Medrano, Vı́ctor Guallar, Ángel T. Martı́nez
Software Mentions: 2
Published: over 11 years ago

10.1016/j.bbapap.2017.08.005

Thermal sensitivity and flexibility of the Cε3 domains in immunoglobulin E
Cited by: 9
Author(s): K.A. Dore, Anna M. Davies, N. Drinkwater, Andrew J. Beavil, James M. McDonnell, Brian J. Sutton
Software Mentions: 2
Published: almost 9 years ago

10.1107/S1399004714027114

Interaction of the amyloid precursor protein-like protein 1 (APLP1) E2 domain with heparan sulfate involves two distinct binding modes
Cited by: 12
Author(s): S.O. Dahms, Magnus C. Mayer, Dirk Roeser, Gerd Multhaup, Manuel E. Than
Software Mentions: 2
Published: over 11 years ago

10.1107/S1399004715002308

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Cited by: 67
Author(s): A.Y. Lyubimov, Thomas D. Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B. Zeldin, Aina E. Cohen, S. Michael Soltis, E.L. Baxter, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, James M. Berger
Software Mentions: 2
Published: over 11 years ago

10.1242/bio.037663

Development and validation of RdRp Screen, a crystallization screen for viral RNA-dependent RNA polymerases
Cited by: 8
Author(s): Federica Riccio, Sandeep K. Talapatra, Sally Oxenford, Richard Angell, Michela Mazzon, Frank Kozielski
Software Mentions: 2
Published: over 7 years ago

10.1107/S2053230X15019986

Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking
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Author(s): Tobias Rumpf, S. Gerhardt, Oliver Einsle, Manfred Jung
Software Mentions: 2
Published: over 10 years ago

10.1155/2019/6125068

Structural Basis for the Selective Inhibition of Cdc2-Like Kinases by CX-4945
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Author(s): Joo Youn Lee, Ji-Sook Yun, Woo‐Keun Kim, Hang-Suk Chun, Hyeonseok Jin, Sungchan Cho, Jeong Ho Chang
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2053230X17008093

Crystal structure of a family 6 cellobiohydrolase from the basidiomycetePhanerochaete chrysosporium
Cited by: 8
Author(s): Mikako Tachioka, Akihiko Nakamura, Takuya Ishida, Kiyohiko Igarashi, Masahiro Samejima
Software Mentions: 2
Published: about 9 years ago

10.3390/biom10040615

Insight into the RssB-Mediated Recognition and Delivery of σs to the AAA+ Protease, ClpXP
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Author(s): Dimce Micevski, Kornelius Zeth, Terrence D. Mulhern, Verena J. Schuenemann, Jessica E. Zammit, Kaye N. Truscott, David A. Dougan
Software Mentions: 2
Published: over 6 years ago

10.3390/biom9060221

The Role of a Key Amino Acid Position in Species-Specific Proteinaceous dUTPase Inhibition
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Author(s): András Benedek, Fanni Temesváry-Kis, Tamjidmaa Khatanbaatar, Ibolya Leveles, Éva Viola Surányi, J. Szabó, Lívius Wunderlich, Beáta G. Vértessy
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2019.01229

Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) From Arabidopsis thaliana
Cited by: 9
Author(s): Aaron H. Liepman, J. Vijayalakshmi, Daniel Peisach, Brian Hulsebus, Laura J. Olsen, Mark A. Saper
Software Mentions: 2
Published: almost 7 years ago

10.1107/S1600576715010432

Programming new geometry restraints: parallelity of atomic groups
Cited by: 13
Author(s): Oleg Sobolev, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: about 11 years ago

10.1107/S2053230X15008766

Structural characterization of the principal mRNA-export factor Mex67–Mtr2 fromChaetomium thermophilum
Cited by: 8
Author(s): Shintaro Aibara, Eugene Valkov, Meindert H. Lamers, Lyudmila Dimitrova, Ed Hurt, Murray Stewart
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.03674

Molecular assembly of the period-cryptochrome circadian transcriptional repressor complex
Cited by: 87
Author(s): Shannon N. Nangle, Clark Rosensweig, Nobuya Koike, Hajime Tei, Joseph S. Takahashi, Carla B. Green, Ning Zheng
Software Mentions: 2
Published: about 12 years ago

10.3389/fmolb.2017.00068

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp
Cited by: 18
Author(s): E. Krysztofinska, N.J. Evans, Arjun Thapaliya, James W. Murray, Rhodri M. L. Morgan, Santiago Martínez-Lumbreras, Rivka L. Isaacson
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0087267

Crystal Structure of Arginine Methyltransferase 6 from Trypanosoma brucei
Cited by: 23
Author(s): Chongyuan Wang, Yuwei Zhu, Jiajia Chen, Xu Li, Junxia Peng, Jiajing Chen, Yang Zou, Zhiyong Zhang, Hongtao Jin, Pengyuan Yang, Jihui Wu, Liwen Niu, Qingguo Gong, Maikun Teng, Yunyu Shi
Software Mentions: 2
Published: over 12 years ago

10.3389/fphar.2019.00474

Crystal Structure of the Monomeric Extracellular Domain of α9 Nicotinic Receptor Subunit in Complex With α-Conotoxin RgIA: Molecular Dynamics Insights Into RgIA Binding to α9α10 Nicotinic Receptors
Cited by: 38
Author(s): Marios Zouridakis, Athanasios Papakyriakou, Igor A. Ivanov, Igor E. Kasheverov, Victor I. Tsetlin, Socrates J. Tzartos, Petros Giastas
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0050055

Tolerance of Protein Folding to a Circular Permutation in a PDZ Domain
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Author(s): Greta Hultqvist, Avinash S. Punekar, Angela Morrone, N. Celestine, Åke Engström, M. Selmer, Stefano Gianni, Per Jemth
Software Mentions: 2
Published: over 13 years ago

10.1107/S1399004713033634

Multi-PAS domain-mediated protein oligomerization of PpsR fromRhodobacter sphaeroides
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Author(s): Udo Heintz, Anton Meinhart, Andreas Winkler
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.09684

Mechanisms of ribosome stalling by SecM at multiple elongation steps
Cited by: 64
Author(s): Jun Zhang, Xiaoyi Pan, Kaige Yan, Shan Sun, Ning Gao, Sen-Fang Sui
Software Mentions: 2
Published: over 10 years ago

10.1107/S2053230X15024565

Structure of the human histone chaperone FACT Spt16 N-terminal domain
Cited by: 14
Author(s): Gabriele Marcianò, Danny T. Huang
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.12856

Myosin III-mediated cross-linking and stimulation of actin bundling activity of Espin
Cited by: 21
Author(s): Haiyang Liu, Jianchao Li, Manmeet H. Raval, Ningning Yao, Xiǎoyīng Dèng, Qing Lü, Si Nie, Wei Feng, Jun Wan, Christopher M. Yengo, Weichen Liu, Mingjie Zhang
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2019.01309

Comparative Study of Two Chondroitin Sulfate/Dermatan Sulfate 4-O-Sulfatases With High Identity
Cited by: 6
Author(s): Shumin Wang, Tianning Su, Qingdong Zhang, Jingwen Guan, Jing He, Lichuan Gu, Fuchuan Li
Software Mentions: 2
Published: about 7 years ago

10.3389/fmolb.2021.642606

Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus thermophilus
Cited by: 2
Author(s): Julien Cappele, Abbas M. Ali, Nathalie Leblond‐Bourget, Sandrine Mathiot, Tiphaine Dhalleine, Sophie Payot, Martin Savko, Claude Didierjean, F. Favier, Badreddine Douzi
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.03239

How lamina-associated polypeptide 1 (LAP1) activates Torsin
Cited by: 89
Author(s): Brian A Sosa, F. Esra Demircioglu, James Z. Chen, Jessica R. Ingram, Hidde L. Ploegh, Thomas Schwartz
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pbio.1001776

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
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Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: over 12 years ago

10.3389/fphar.2017.00681

Target Identification of Mycobacterium tuberculosis Phenotypic Hits Using a Concerted Chemogenomic, Biophysical, and Structural Approach
Cited by: 21
Author(s): Grace Mugumbate, V. Mendes, M. Błaszczyk, Mohamad Sabbah, George Papadatos, Joël Lelièvre, Lluís Ballell, David Barros, C. Abell, Tom L. Blundell, John P. Overington
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.01468

Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase From Shigella flexneri
Cited by: 15
Author(s): Xiaopan Gao, Zhixia Mu, Xia Yu, Bo Qin, Justyna Aleksandra Wojdyla, Meitian Wang, Sheng Cui
Software Mentions: 2
Published: about 8 years ago

10.1107/S0907444913025250

Improvements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration
Cited by: 13
Author(s): W. Awad, Gabriel Svensson Birkedal, Marjolein M.G.M. Thunnissen, Katrin Mani, D.T. Logan
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2019.02755

Characterization of a Dimeric Arginase From Zymomonas mobilis ZM4
Cited by: 6
Author(s): Seung-A Hwangbo, Jiwon Kim, Sun-Ju Jung, Kyeong Sik Jin, Jie‐Oh Lee, Ji Soo Kim, Suk-Youl Park
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: over 8 years ago

10.1107/S0907444913024608

Split green fluorescent protein as a modular binding partner for protein crystallization
Cited by: 27
Author(s): Hau B. Nguyen, Li Wei Hung, Todd O. Yeates, Thomas C. Terwilliger, Geoffrey S. Waldo
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2019.00326

The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding
Cited by: 8
Author(s): Sara Gómez, Javier Querol-García, G. Sanchez-Barron, Marta Subías, Alex González-Alsina, V. Franco-Hidalgo, Sebastián Albertí, Santiago Rodrı́guez de Córdoba, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: over 5 years ago

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Papers Mentioning PHENIX 2,287