cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1111/febs.15514

Structure‐based design of peptides that trigger Streptococcus pneumoniae cell death
Cited by: 11
Author(s): Sung-Min Kang, Chun Jin, Do-Hee Kim, Sung Jean Park, Sang-Woo Han, Bong-Jin Lee
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2021.668897

The Plastid-Encoded RNA Polymerase-Associated Protein PAP9 Is a Superoxide Dismutase With Unusual Structural Features
Cited by: 8
Author(s): Adrien Favier, Pierre Gans, Elisabetta Erba, Luca Signor, Soumiya Sankari Muthukumar, Thomas Pfannschmidt, Robert Blanvillain, David Cobessi
Software Mentions: 3
Published: almost 3 years ago

10.1371/journal.ppat.1006448

Structure of the Neisseria Adhesin Complex Protein (ACP) and its role as a novel lysozyme inhibitor
Cited by: 18
Author(s): María Victoria Humbert, Amaka M. Awanye, Lu Lian, Jeremy P. Derrick, Myron Christodoulides
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.ppat.1005265

The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases
Cited by: 25
Author(s): D.S. Ferrero, M. Buxaderas, José F. Rodrı́guez, N. Verdaguer
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.ppat.1005165

Structure Elucidation of Coxsackievirus A16 in Complex with GPP3 Informs a Systematic Review of Highly Potent Capsid Binders to Enteroviruses
Cited by: 19
Author(s): Luigi De Colibus, Xiangxi Wang, Aloys Tijsma, Johan Neyts, John A. B. Spyrou, Jingshan Ren, Jonathan M. Grimes, Gerhard Puerstinger, Pieter Leyssen, Elizabeth E. Fry, Zihe Rao, David I. Stuart
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.ppat.1004795

The Aspartate-Less Receiver (ALR) Domains: Distribution, Structure and Function
Cited by: 25
Author(s): Andrew J. Maule, David P. Wright, Joshua Weiner, Lu Han, Francis C. Peterson, Brian F. Volkman, N.R. Silvaggi, Andrew T. Ulijasz
Software Mentions: 3
Published: about 9 years ago

10.1074/jbc.M114.627059

Neuronal Calcium Sensor-1 Binds the D2 Dopamine Receptor and G-protein-coupled Receptor Kinase 1 (GRK1) Peptides Using Different Modes of Interactions
Cited by: 25
Author(s): S. Pandalaneni, V. Karuppiah, Muhammad Saleem, Lee P. Haynes, Robert D. Burgoyne, Olga Mayans, Jeremy P. Derrick, Lu‐Yun Lian
Software Mentions: 3
Published: almost 9 years ago

10.1074/jbc.M114.621789

Complex Structure and Biochemical Characterization of the Staphylococcus aureus Cyclic Diadenylate Monophosphate (c-di-AMP)-binding Protein PstA, the Founding Member of a New Signal Transduction Protein Family
Cited by: 47
Author(s): Ivan Campeotto, Yong Everett Zhang, Miroslav Mladenov, Paul S. Freemont, Angelika Gründling
Software Mentions: 3
Published: over 9 years ago

10.1128/JB.00115-20

A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes
Cited by: 4
Author(s): S. Hansen, Michael Hall, C. Grundström, Kristoffer Brännström, A. Elisabeth Sauer‐Eriksson, Jörgen Johansson
Software Mentions: 3
Published: about 4 years ago

10.1107/S1600576720002423

Application of a high-throughput microcrystal delivery system to serial femtosecond crystallography
Cited by: 21
Author(s): Donghyeon Lee, Sehan Park, Keondo Lee, Jang Woo Kim, Gisu Park, Ki Hyun Nam, Sangwon Baek, Wan Kyun Chung, Jong‐Lam Lee, Yunje Cho, Jaehyun Park
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-019-40432-w

Reactive centre loop dynamics and serpin specificity
Cited by: 28
Author(s): Emilia M. Marijanovic, James Fodor, Blake T. Riley, Benjamin T. Porebski, Maurício G. S. Costa, Itamar Kass, David E. Hoke, Sheena McGowan, Ashley M. Buckle
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-39588-2

The IKK-binding domain of NEMO is an irregular coiled coil with a dynamic binding interface
Cited by: 18
Author(s): Adam H. Barczewski, Michael J. Ragusa, Dale F. Mierke, Maria Pellegrini
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-39641-0

Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H
Cited by: 13
Author(s): Chang Woo Lee, Sun Ha Park, Chang-Sung Jeong, Sun Mi Shin, Hyun Park, Jun Hyuck Lee
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.59225

Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers
Cited by: 33
Author(s): William Wan, Mairi Clarke, Michael Norris, Larissa Kolesnikova, Alexander Koehler, Zachary A. Bornholdt, Stephan Becker, Erica Ollmann Saphire, John Briggs
Software Mentions: 3
Published: over 3 years ago

10.1016/j.febslet.2015.11.030

Crystal structure of the Z-ring associated cell division protein ZapC from Escherichia coli
Cited by: 13
Author(s): Cristina Ortiz, Danguole Kureisaite-Ciziene, Florian Schmitz, Stephen H. McLaughlin, Miguel Vicente, Jan Löwe
Software Mentions: 3
Published: over 8 years ago

10.1016/j.jmb.2015.08.023

Atomic-Resolution Structures of the APC/C Subunits Apc4 and the Apc5 N-Terminal Domain
Cited by: 9
Author(s): Nora Cronin, Jing Yang, Ziguo Zhang, Kiran Kulkarni, Leifu Chang, Hiroyuki Yamano, David Barford
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.60552

Cryo-EM analysis of PIP2 regulation in mammalian GIRK channels
Cited by: 43
Author(s): Yiming Niu, Xiao Tao, Kouki K Touhara, Roderick MacKinnon
Software Mentions: 3
Published: over 3 years ago

10.1016/j.jmb.2015.10.027

A Substrate Mimic Allows High-Throughput Assay of the FabA Protein and Consequently the Identification of a Novel Inhibitor of Pseudomonas aeruginosa FabA
Cited by: 6
Author(s): L. Moynié, Anthony G. Hope, Kara Finzel, J.W. Schmidberger, Stuart M. Leckie, Günter Schneider, Michael D. Burkart, Andrew D. Smith, David W. Gray, James H. Naismith
Software Mentions: 3
Published: over 8 years ago

10.3389/fbioe.2020.00707

An (R)-Selective Transaminase From Thermomyces stellatus: Stabilizing the Tetrameric Form
Cited by: 18
Author(s): Christian M. Heckmann, L.J. Gourlay, Beatriz Domı́nguez, Francesca Paradisi
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2017.02034

Molecular Insight into the Acryloyl-CoA Hydration by AcuH for Acrylate Detoxification in Dimethylsulfoniopropionate-Catabolizing Bacteria
Cited by: 10
Author(s): Hai‐Yan Cao, Peng Wang, Fei Xu, Ping‐Yi Li, Bin-Bin Xie, Qi‐Long Qin, Yuzhong Zhang, Chunyang Li, Xiu-Lan Chen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-37522-6

MITF has a central role in regulating starvation-induced autophagy in melanoma
Cited by: 60
Author(s): Katrín Möller, Sara Sigurbjörnsdóttir, Asgeir Ö. Arnthórsson, Vivian Pogenberg, Ramile Dilshat, Valerie Fock, Sólveig Hlín Brynjólfsdóttir, Christian Bindesbøll, M. Bessadóttir, Helga M. Ögmundsdóttir, Anne Simonsen, Lionel Larue, Matthias Wilmanns, Vésteinn Thórsson, Eiríkur Steingrimsson, Margrét H. Ögmundsdóttir
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-33193-5

Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas
Cited by: 10
Author(s): Hong‐Hsiang Guan, Yin-Cheng Hsieh, Po‐Chun Lin, Yen‐Chieh Huang, Masato Yoshimura, Liying Chen, Shao-Kang Chen, Phimonphan Chuankhayan, Chien-Chih Lin, Nai-Chi Chen, Atsushi Nakagawa, Sunney I. Chan, Chun‐Jung Chen
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-30154-w

Genome-wide association study and genomic prediction using parental and breeding populations of Japanese pear (Pyrus pyrifolia Nakai)
Cited by: 44
Author(s): Mai F. Minamikawa, Norio Takada, Shingo Terakami, Toshihiro Saito, Akio Onogi, Hiromi Kajiya‐Kanegae, Takeshi Hayashi, Takatsugu Yamamoto, Hiroyoshi Iwata
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-29664-4

Structural basis for selective inhibition of immunoglobulin E-receptor interactions by an anti-IgE antibody
Cited by: 20
Author(s): Jiun-Bo Chen, Faruk Ramadani, M.O.Y. Pang, Rebecca L. Beavil, Mary D. Holdom, A.N. Mitropoulou, Andrew J. Beavil, Hannah J. Gould, Tse Wen Chang, Brian J. Sutton, James M. McDonnell, Anna M. Davies
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-29058-6

Structural determinants of specificity and regulation of activity in the allosteric loop network of human KLK8/neuropsin
Cited by: 7
Author(s): Mekdes Debela, Viktor Magdolen, Wolfgang Skala, Brigitta Elsässer, Eric L. Schneider, Charles S. Craik, Martin L. Biniossek, Oliver Schilling, Wolfram Bode, Hans Brandstetter, Peter Goettig
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.jmb.2013.10.039

Structural Determinants of Unique Properties of Human IgG4-Fc
Cited by: 95
Author(s): Anna M. Davies, Theo Rispens, Pleuni Ooijevaar-de Heer, Hannah J. Gould, Royston Jefferis, Rob C. Aalberse, Brian J. Sutton
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-018-26601-3

Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor
Cited by: 36
Author(s): Mathieu Schwartz, Thomas Perrot, Emmanuel Aubert, Stéphane Dumarçay, F. Favier, Philippe Gérardin, Mélanie Morel‐Rouhier, Guillermo Mulliert, Fanny Saiag, Claude Didierjean, Éric Gelhaye
Software Mentions: 3
Published: almost 6 years ago

10.1126/sciadv.abh0250

X-ray free-electron laser studies reveal correlated motion during isopenicillin N synthase catalysis
Cited by: 19
Author(s): Patrick Rabe, Jos J. A. G. Kamps, Kyle D. Sutherlin, J. Linyard, Pierre Aller, Cindy C. Pham, Hiroki Makita, I.J. Clifton, M.A. McDonough, T.M. Leissing, Denis Shutin, Pauline A. Lang, A. Butryn, Jürgen Brem, Sheraz Gul, Franklin D. Fuller, In-Sik Kim, Mun Hon Cheah, Thomas Fransson, Asmit Bhowmick, I.D. Young, Lee J. O’Riordan, Aaron S. Brewster, Ilaria Pettinati, Margaret Doyle, Yasumasa Joti, Shigeki Owada, Kensuke Tono, A. Batyuk, Mark S. Hunter, Roberto Alonso-Mori, Uwe Bergmann, R.L. Owen, Nicholas K. Sauter, Timothy D. W. Claridge, Carol V. Robinson, Vittal K. Yachandra, Junko Yano, Jan Kern, Allen M. Orville, Christopher J. Schofield
Software Mentions: 3
Published: over 2 years ago

10.1126/sciadv.aav8421

HspB1 phosphorylation regulates its intramolecular dynamics and mechanosensitive molecular chaperone interaction with filamin C
Cited by: 44
Author(s): M Collier, T. Reid Alderson, Carin Pamela de Villiers, D Nicholls, Heidi Y. Gastall, Timothy M. Allison, Matteo T. Degiacomi, Jiang He, Georg Mlynek, Dieter O. Fürst, Peter F.M. van der Ven, Kristina Djinović-Carugo, Andrew J. Baldwin, Hugh Watkins, Katja Gehmlich, Justin L. P. Benesch
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.02084

YtrASa, a GntR-Family Transcription Factor, Represses Two Genetic Loci Encoding Membrane Proteins in Sulfolobus acidocaldarius
Cited by: 9
Author(s): Liesbeth Lemmens, Laurentijn Tilleman, Ezra De Koning, K. Valegård, Ann-Christin Lindås, Filip Van Nieuwerburgh, Dominique Maes, Eveline Peeters
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.17903

A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading
Cited by: 32
Author(s): Chun-Min Shan, Jiyong Wang, Ke Xu, Huijie Chen, Jia-Xing Yue, Stuart Andrews, James J. Moresco, John R. Yates, Péter L. Nagy, Liang Tong, Songtao Jia
Software Mentions: 3
Published: over 7 years ago

10.1186/s13045-020-00979-y

Discovery of a dual inhibitor of NQO1 and GSTP1 for treating glioblastoma
Cited by: 28
Author(s): Kecheng Lei, Xiaoxia Gu, Alvaro G. Alvarado, Yuhong Du, Shilin Luo, Eun Hee Ahn, Seong Su Kang, Bing Ji, Xia Liu, Hui Mao, Haian Fu, Harley I. Kornblum, Lingjing Jin, Li Hua, Keqiang Ye
Software Mentions: 3
Published: over 3 years ago

10.1002/pro.3804

Structural and biochemical analysis of the metallo‐β‐lactamase L1 from emerging pathogen Stenotrophomonas maltophilia revealed the subtle but distinct di‐metal scaffold for catalytic activity
Cited by: 19
Author(s): Young Chang Kim, N. Maltseva, Mateusz Wilamowski, C. Tesar, M. Endres, A. Joachimiak
Software Mentions: 3
Published: over 4 years ago

10.1073/pnas.1911776116

Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection
Cited by: 14
Author(s): Fiona Whelan, Aleix Lafita, Samuel C. Griffiths, R.E.M. Cooper, J.L. Whittingham, J.P. Turkenburg, Iain W. Manfield, Alexander N. St John, Emanuele Paci, Alex Bateman, Jennifer R. Potts
Software Mentions: 3
Published: over 4 years ago

10.3389/fcimb.2020.00082

Francisella novicida Two-Component System Response Regulator BfpR Modulates iglC Gene Expression, Antimicrobial Peptide Resistance, and Biofilm Production
Cited by: 6
Author(s): Scott N. Dean, Morgan E. Milton, John Cavanagh, Monique L. van Hoek
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.ppat.1009775

Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses
Cited by: 10
Author(s): Sofia Banchenko, Ferdinand Krupp, Christine Gotthold, Jörg Bürger, Andrea Graziadei, Francis J. O’Reilly, Ludwig Sinn, Olga Ruda, Juri Rappsilber, C.M.T. Spahn, Thorsten Mielke, Ian A. Taylor, David Schwefel
Software Mentions: 3
Published: almost 3 years ago

10.3389/fmolb.2021.652530

Cryo-EM Map–Based Model Validation Using the False Discovery Rate Approach
Cited by: 4
Author(s): Mateusz Olek, Agnel Praveen Joseph
Software Mentions: 3
Published: about 3 years ago

10.1016/j.str.2013.10.013

Structure and Self-Assembly of the Calcium Binding Matrix Protein of Human Metapneumovirus
Cited by: 45
Author(s): C. Leyrat, Max Renner, K. Harlos, Juha T. Huiskonen, Jonathan M. Grimes
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.ppat.1009016

Structural insights into loss of function of a pore forming toxin and its role in pneumococcal adaptation to an intracellular lifestyle
Cited by: 10
Author(s): Dilip Badgujar, Anjali Anil, Angharad E Green, Manalee Vishnu Surve, Shilpa Madhavan, Alison J. Beckett, Ian A. Prior, Barsa Kanchan Jyotshna Godsora, Sanket B. Patil, Prachi More, Shruti Guha Sarkar, Andrea M. Mitchell, Rinti Banerjee, Prashant S. Phale, Timothy J. Mitchell, Daniel R. Neill, Prasenjit Bhaumik, Anirban Banerjee
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.ppat.1008848

Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis
Cited by: 1
Author(s): Libang He, Hao Wang, Yang Liu, Mei Kang, Tao Li, Changcheng Li, Aiping Tong, Yuanfeng Zhu, Yingjie Song, Stephen J. Savarino, Michael G. Prouty, Di Xia, Rui Bao
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.33274

Structural basis of proton translocation and force generation in mitochondrial ATP synthase
Cited by: 56
Author(s): N. Klusch, Bonnie J. Murphy, Deryck J. Mills, Özkan Yıldız, Werner Kühlbrandt
Software Mentions: 2
Published: over 6 years ago

10.1140/epjc/s10052-016-4320-5

Energy versus centrality dependence of the jet quenching parameter $$\hat{q}$$ q ^ at RHIC and LHC: a new puzzle?
Cited by: 56
Author(s): Carlota Andrés, N. Armesto, Matthew Luzum, Carlos A. Salgado, Pía Zurita
Software Mentions: 2
Published: over 7 years ago

10.1140/epjc/s10052-015-3819-5

Heavy-flavour and quarkonium production in the LHC era: from proton–proton to heavy-ion collisions
Cited by: 396
Author(s): A. Andronic, François Arleo, R. Arnaldi, A. Beraudo, E. Bruna, D. Caffarri, Z. Conesa del Valle, J. G. Contreras, T. Dahms, A. Dainese, Magdalena Djordjevic, E. G. Ferreiro, H. Fujii, Pol Bernard Gossiaux, R. Granier de Cassagnac, C. Hadjidakis, M. He, Hendrik van Hees, W. A. Horowitz, R. Kolevatov, B. Z. Kopeliovich, J. P. Lansberg, Maria-Paola Lombardo, C. Lourenço, Gines Martinez-Garcia, L. Massacrier, C. Mironov, A. Mischke, Marlene Nahrgang, M. Nguyen, J. Nystrand, Stéphane Peigné, S. Porteboeuf-Houssais, I. K. Potashnikova, A. Rakotozafindrabe, Ralf Rapp, P. Robbe, M. Rosati, P. Rosnet, Helmut Satz, R. Schicker, I. Schienbein, Iván Schmidt, E. Scomparin, Rajnikant Sharma, J. Stachel, D. Stocco, Michael Strickland, R. Tieulent, B. A. Trzeciak, Jan Uphoff, Ivan Vitev, R. Vogt, K. Watanabe, H. K. Woehri, Pengfei Zhuang
Software Mentions: 2
Published: about 8 years ago

10.1140/epjc/s10052-015-3422-9

Measurement of pion, kaon and proton production in proton–proton collisions at $$\sqrt{s} = 7$$ s = 7 TeV
Cited by: 129
Author(s): J. Adam, D. Adamová, M. M. Aggarwal, G. Aglieri Rinella, M. Agnello, Neelima Agrawal, Z. Ahammed, I. Ahmed, Sang Un Ahn, I. Aimo, S. Aiola, M. Ajaz, A. Akindinov, Sk Noor Alam, Dmitry Aleksandrov, B. Alessandro, D. Alexandre, R. Alfaro Molina, A. Alici, A. Alkin, J. Alme, T. Alt, S. Altinpinar, I. Altsybeev, C. Alves Garcia Prado, C. Andrei, A. Andronic, V. Anguelov, J. Anielski, T. Antičić, F. Antinori, P. Antonioli, L. Aphecetche, H. Appelshäuser, S. Arcelli, N. Armesto, R. Arnaldi, T. Aronsson, I. C. Arsene, M. Arslandok, A. Augustinus, R. Averbeck, M. D. Azmi, M. Bach, A. Badalà, Y. W. Baek, S. Bagnasco, R. Bailhache, R. Bala, A. Baldisseri, M. Ball, F. Baltasar Dos Santos Pedrosa, R. C. Baral, Anastasia Maria Barbano, R. Barbera, F. Barile, G. G. Barnaföldi, L. S. Barnby, V. Barret, P. Bartalini, J. Bartke, E. Bartsch, M. Basile, N. Bastid, S. Basu, B. Bathen, G. Batigne, A. Batista Camejo, B. Batyunya, P. C. Batzing, I. G. Bearden, H. Beck, C. Bedda, N. K. Behera, I. Belikov, F. Bellini, H. Bello Martínez, R. Bellwied, R. Belmont, E. Belmont‐Moreno, V. Belyaev, G. Bencédi, S. Beolè, I. Berceanu, A. Bercuci, Y. Berdnikov, D. Berényi, R. A. Bertens, D. Berzano, L. Betev, A. Bhasin, I. R. Bhat, A. K. Bhati, B. Bhattacharjee, J. Bhom, L. Bianchi, N. Bianchi, C. Bianchin, J. Bielčík, J. Bielčíková, A. Bilandzic, S. Biswas, S. Bjelogrlic, F. Blanco, D. Blau, C. Blume, F. Bock, A. Bøgdanov, H. Bøggild, L. Boldizsár, M. Bombara, J. Book, H. Borel, A. Borissov, M. Borri, F. Bossú, M. Botje, E. Botta, S. Böttger, P. Braun‐Munzinger, M. Bregant, T. Breitner, T. A. Broker, T. A. Browning, M. Broz, E. Brücken, E. Bruna, G. Bruno, D. Budnikov, H. Buesching, S. Bufalino, P. Bunčić, O. Busch, Z. Buthelezi, J. T. Buxton, D. Caffarri, X. Cai, H. Caines, L. Calero Diaz, A. Caliva, E. Calvo Villar, P. Camerini, F. Carena, W. Carena, J. Castillo Castellanos, A. Castro, E. A. R. Casula, C. Cavicchioli, C. Ceballos Sànchez, J. Cepila, P. Cerello, B. Chang, S. Chapeland, M. Chartier, J. L. Charvet, S. Chattopadhyay, V. Chelnokov, M. Cherney, C. Cheshkov, B. Cheynis, V. Chibante Barroso, D. D. Chinellato, P. Chochula, K. Choi, M. Chojnacki, S. Choudhury, P. Christakoglou, C. H. Christensen, P. Christiansen, T. Chujo, S. U. Chung, C. Cicalò, L. Cifarelli, F. Cindolo, J. Cleymans, F. Colamaria, D. Colella, A. Collu, M. Colocci, G. Conesa Balbastre, Z. Conesa del Valle, M. Connors, J. G. Contreras, Thomas Michael Cormier, Y. Corrales Morales, I. Cortés Maldonado, P. Cortese, M. R. Cosentino, F. Costa, P. Crochet, R. Cruz Albino, E. Cuautle, L. Cunqueiro, T. Dahms, A. Dainese, A. Danu, D. Das, I. Das, S. Das, A. Dash, S. Dash, S. De, A. De, G. de Cataldo, J. de Cuveland, A. De Falco, D. De Gruttola, N. De Marco, S. De Pasquale, A. Deisting, A. Deloff, E. Dénes, G. DʼErasmo, D. Di Bari, A. Di Mauro, P. Di Nezza, M. A. Diaz Corchero, T. Dietel, P. Dillenseger, R. Divià, Oeystein Djuvsland, A. Dobrin, T. Dobrowolski, D. Domenicis Gimenez, B. Dönigus, O. Dordic, A. K. Dubey, A. Dubla, L. Ducroux, P. Dupieux, R. J. Ehlers, D. Elia, H. Engel, B. Erazmus, F. Erhardt, D. Eschweiler, B. Espagnon, M. Estienne, S. Esumi, J. Eum, D. Evans, S. Evdokimov, G. Eyyubova, L. Fabbietti, D. Fabris, J. Faivre, A. Fantoni, M. Fasel, L. Feldkamp, D. Felea, A. Feliciello, Г. Феофилов, J. Ferencei, A. Fernández Téllez, E. G. Ferreiro, A. Ferretti, A. Festanti, J. Figiel, M. A. S. Figueredo, S. Filchagin, D. Finogeev, F. M. Fionda, E. M. Fiore, M. G. Fleck, M. Floris, S. Foertsch, P. Foka, S. Fokin, E. Fragiacomo, A. Francescon, U. Frankenfeld, U. Fuchs, C. Furget, A. Furs, M. Fusco Girard, J. J. Gaardhøje, M. Gagliardi, A. M. Gago, M. Gallio, D. R. Gangadharan, P. Ganoti, C. Gao, C. Garabatos, E. García-Solis, C. Gargiulo, P. Gasik, M. Germain, A. Gheaţă, M. Gheata, P. Ghosh, S. K. Ghosh, P. Gianotti, P. Giubellino, P. Giubilato, E. Gladysz Dziadus, P. Glässel, A. Gómez Ramírez, Pedro González Zamora, S. Gorbunov, L. Görlich, S. Gotovac, V. Grabski, L. K. Graczykowski, A. Grelli, A. Grigoras, C. Grigoras, V. Grigoriev, A. Grigoryan, S. Grigoryan, B. Grinyov, N. Grion, J. F. Grosse-Oetringhaus, J.‐Y. Grossiord, R. Grosso, F. Guber, R. Guernane, B. Guerzoni, K. Gulbrandsen, H. Gulkanyan, T. Gunji, A. Gupta, R. Gupta, R. Haake, Ø. Haaland, C. Hadjidakis, M. Haiduc, H. Hamagaki, G. Hamar, L. D. Hanratty, A. Hansen, J. W. Harris, H. Hartmann, A. Harton, D. Hatzifotiadou, S. Hayashi, S. T. Heckel, M. Heide, H. Helstrup, A. Herghelegiu, G. Herrera Corral, B. A. Hess, K. F. Hetland, T. E. Hilden, H. Hillemanns, B. Hippolyte, P. Hristov, M. Huang, T. J. Humanic, N. Hussain, T. Hussain, D. Hutter, Dae Sung Hwang, R. Ilkaev, I. Ilkiv, M. Inaba, C. Ionita, M. Ippolitov, M. Irfan, M. Ivanov, V. Ivanov, V. Izucheev, P. Jacobs, C. Jahnke, H. J. Jang, M. A. Janik, P. H. S. Y. Jayarathna, C. Jena, S. Jena, R. T. Jimenez Bustamante, P. G. Jones, H. Jung, A. Jusko, P. Kaliňák, A. Kalweit, J. Kamin, J. H. Kang, V. Kaplin, S. Kar, A. Karasu Uysal, O. Karavichev, T. Karavicheva, E. Karpechev, U. Kebschull, R. Keidel, D. L. D. Keijdener, M. Keil, K. H. Khan, M. Mohisin Khan, P. Khan, S. A. Khan, A. Khanzadeev, Y. Kharlov, B. Kileng, B. Kim, D. W. Kim, D. J. Kim, H. Kim, J. S. Kim, M. Kim, S. Kim, T. Kim, S. Kirsch, I. Kisel, S. Kiselev, A. Kisiel, G. Kiss, J. L. Klay, C. Klein, J. Klein, C. Klein-Bösing, Alexander Kluge, M. L. Knichel, A. G. Knospe, T. Kobayashi, C. Kobdaj, M. Kofarago, M. K. Köhler, T. Kollegger, A. Kolojvari, V. Kondratiev, N. Kondratyeva, E. Kondratyuk, A. Konevskikh, C. Kouzinopoulos, O. Kovalenko, В. Коваленко, M. Kowalski, S. Kox, G. Koyithatta Meethaleveedu, J. Král, I. Králik, A. Kravčáková, M. Krelina, M. Kretz, M. Krivda, F. Křížek, E. Kryshen, M. Krzewicki, A. M. Kubera, V. Kučera, Y. Kucheriaev, T. Kugathasan, C. Kuhn, P. G. Kuijer, I. Kulakov, J. Kumar, L. Kumar, P. Kurashvili, A. Kurepin, A. Kuryakin, S. Kushpil, M. J. Kweon, Y. Kwon, S. L. La Pointe, P. La Rocca, C. Lagana Fernandes, I. Lakomov, R. Langoy, C. Lara, A. Lardeux, A. Lattuca, E. Laudi, R. Lea, L. Leardini, G. R. Lee, S. Lee, I. Legrand, J. Lehnert, R. C. Lemmon, V. Lenti, E. Leogrande, I. Léon Monźon, M. Leoncino, P. Lévai, S. Li, X. Li, J. Lien, R. Lietava, S. Lindal, V. Lindenstruth, C. Lippmann, M. A. Lisa, H. M. Ljunggren, D. F. Lodato, P. I. Loenne, V. R. Loggins, V. Loginov, C. Loizides, X. Lopez, E. López Torres, A. J. Lowe, X.-G. Lu, P. Luettig, M. Lunardon, G. Luparello, A. Maevskaya, M. Mager, S. Mahajan, S. M. Mahmood, A. Maire, R. Majka, M. Malaev, I. Maldonado Cervantes, L. Malinina, D. Mal’Kevich, P. Malzacher, A. Mamonov, L. Manceau, V. Manko, F. Manso, V. Manzari, M. Marchisone, J. Mareš, G. V. Margagliotti, A. Margotti, J. Margutti, A. Marı́n, C. Markert, M. Marquard, N. A. Martin, J. Martin Blanco, P. Martinengo, M. Martı́nez, G. Garcı́a, M. Martinez Pedreira, Y. Martynov, A. Mas, S. Masciocchi, M. Masera, A. Masoni, L. Massacrier, A. Mastroserio, H. Masui, A. Matyja, Christoph Mayer, J. Mazer, M. A. Mazzoni, D. McDonald, F. Meddi, A. Menchaca‐Rocha, E. Meninno, J. Mercado Pérez, M. Meres, Y. Miake, M. M. Mieskolainen, K. Mikhaylov, L. Milano, J. Milošević, L. M. Minervini, A. Mischke, Aditya Nath Mishra, D. Miśkowiec, J. Mitra, C. M. Mitu, N. Mohammadi, B. Mohanty, L. Molnár, L. Montaño Zetina, E. Montes, M. Morando, D. A. Moreira De Godoy, S. Moretto, A. Morreale, A. Morsch, V. Muccifora, E. Mudnić, D. Mühlheim, S. Muhuri, M. Mukherjee, H. Müller, J. D. Mulligan, M. G. Munhoz, S. Murray, L. Musa, J. Mušinský, B. K. Nandi, R. Nania, E. Nappi, M. U. Naru, C. Nattrass, K. Nayak, T. K. Nayak, S. Nazarenko, A. Nedosekin, L. Nellen, F. Ng, M. Nicassio, M. Niculescu, J. Niedziela, B. S. Nielsen, S. Nikolaev, S. Nikulin, V. Nikulin, F. Noferini, P. Nomokonov, G. Nooren, J. Norman, A. Nyanin, J. Nystrand, H. Oeschler, S. B. Oh, S. Oh, A. Ohlson, A. Okatan, T. Okubo, L. Oláh, J. Oleniacz, A. C. Oliveira Da Silva, Michael Henry Oliver, J. Onderwaater, C. Oppedisano, A. Ortiz Velasquez, A. Öskarsson, J. Otwinowski, K. Oyama, K. Ozdemir, Y. Pachmayer, P. Pagano, G. Paić, C. Pajares, S. K. Pal, J. Pan, A. K. Pandey, D. Pant, V. Papikyan, G. S. Pappalardo, P. Pareek, W. J. Park, S. Parmar, A. Passfeld, V. Paticchio, B. Paul, T. Pawlak, T. Peitzmann, H. Pereira Da Costa, E. Pereira De Oliveira Filho, D. Peresunko, C. Lara, V. Peskov, Y. Pestov, V. Petráček, V. Petrov, M. Petrovici, C. Petta, S. Piano, M. Pikna, P. Pillot, O. Pinazza, L. Pinsky, D. B. Piyarathna, M. Płoskoń, M. Planinić, J. Pluta, S. Pochybová, P. L.M. Podesta-Lerma, M. G. Poghosyan, B. Polichtchouk, N. Poljak, W. Poonsawat, A. Pop, S. Porteboeuf-Houssais, J. Porter, J. Pospı́šil, Sidharth Kumar Prasad, R. Preghenella, F. Prino, C. Pruneau, I. Pshenichnov, M. Puccio, G. Puddu, P. R. Pujahari, V. Punin, J. Putschke, H. Qvigstad, A. Rachevski, S. Raha, S. Rajput, J. Rak, A. Rakotozafindrabe, L. Ramello, R. Raniwala, S. Raniwala, Sami Sakari Rasanen, B. T. Rascanu, D. Rathee, V. Razazi, K. F. Read, J. S. Réal, K. Redlich, R. Reed, A. Rehman, P. Reichelt, M. Reicher, F. Reidt, X. Ren, R. Renfordt, A. R. Reolon, A. Reshetin, F. Rettig, J.-P. Revol, K. Reygers, V. Riabov, R. A. Ricci, T. Richert, Matthias Richter, P. Riedler, W. Riegler, F. Riggi, C. Ristea, A. Rivetti, E. Rocco, M. Rodríguez Cahuantzi, A. Rodriguez Manso, K. Røed, E. Rogochaya, D. Røhr, D. Röhrich, R. Romita, F. Ronchetti, L. Ronflette, P. Rosnet, A. M. Rossi, F. Roukoutakis, A. Roy, C. Roy, P. Roy, A.J. Rubio Montero, R. Rui, R. Russo, E. Ryabinkin, Y. F. Ryabov, A. Rybicki, S. Sadovsky, K. Šafǎŕık, B. Sahlmuller, P. Sahoo, R. Sahoo, S. Sahoo, P. K. Sahu, J. Saini, S. Sakai, M. A. Saleh, Carlos A. Salgado, J. Salzwedel, S. Sambyal, V. Samsonov, X. Sanchez Castro, L. Šándor, A. Sandoval, M. Sano, G. Santagati, D. Sarkar, E. Scapparone, F. Scarlassara, R. P. Scharenberg, C. Schiaua, R. Schicker, C. Schmidt, H. R. Schmidt, S. Schuchmann, J. Schukraft, Martin Schulc, T. Schuster, Y. Schütz, K. Schwarz, K. Schweda, G. Scioli, E. Scomparin, R. Scott, K. S. Seeder, J. Seger, Y. Sekiguchi, I. Selyuzhenkov, K. Senosi, J. Seo, E. Serradilla, A. Sevcenco, A. Shabanov, A. Shabetai, O. Shadura, R. Shahoyan, A. Shangaraev, A. Sharma, N. Sharma, K. Shigaki, K. Shtejer, Y. Sibiriak, S. Siddhanta, K. M. Sielewicz, T. Siemiarczuk, D. Silvermyr, C. Silvestre, G. Simatovic, G. Simonetti, R. Singaraju, R. Singh, S. Singha, V. Singhal, Bikash Sinha, T. Sinha, B. Sitár, M. Sitta, T. B. Skaali, M. Słupecki, N. Smirnov, Raimond Snellings, T. W. Snellman, C. Søgaard, R. A. Soltz, J. Song, M. Song, Zixuan Song, F. Soramel, S. Sörensen, M. Špaček, E. Spiriti, I. Sputowska, M. Stassinaki, B. Srivastava, J. Stachel, I. Stan, G. Stefanek, M. Steinpreis, E. Stenlund, G. Steyn, J. H. Stiller, D. Stocco, P. Strmeň, Alexandre Alarcon Do Passo Suaide, T. Sugitate, C. Suire, M. Suleymanov, R. Sultanov, M. Šumbera, T. J. M. Symons, A. Szabó, A. Szanto de Toledo, I. Szarka, A. Szczepankiewicz, M. Szymański, J. Takahashi, N. Tanaka, M. A. Tangaro, J. D. Tapia ∋Takaki, A. Tarantola Peloni, Mohammad Tariq, M. G. Târzilă, A. Tauro, G. Tejeda Muñoz, A. Telesca, K. Terasaki, C. Terrevoli, B. Teyssier, J. Thäder, D. Thomas, R. Tieulent, A. R. Timmins, A. Toia, S. Trogolo, V. Trubnikov, W. H. Trzaska, T. Tsuji, A. Tumkin, R. Turrisi, Trine Spedstad Tveter, K. Ullaland, A. Uras, G. L. Usai, A. Utrobicic, M. Vajzer, M. Vala, L. Valencia Palomo, S. Vallero, J. Van Der Maarel, J. W. Van Hoorne, M. van Leeuwen, T. Vǎnát, P. Vande Vyvre, D. Varga, A. Vargas, M. Vargyas, R. Varma, M. Vasileiou, A. Vasiliev, A. Vauthier, V. Vechernin, A. M. Veen, M. Veldhoen, A. Velure, M. Venaruzzo, E. Vercellin, S. Vergara Limón, R. Vernet, M. Verweij, L. Vickovic, G. Viesti, J. Viinikainen, Z. Vilakazi, O. Villalobos Baillie, А. Виноградов, L. Vinogradov, Y. Vinogradov, T. Virgili, V. Vislavicius, Y. P. Viyogi, A. Vodopyanov, Martin Andreas Volkl, K. Voloshin, S. A. Voloshin, G. Volpe, B. von Haller, I. Vorobyev, D. Vranić, J. Vrláková, B. Vulpescu, A. Vyushin, B. Wagner, Jan Wagner, H. Wang, M. Wang, Y. Wang, Daisuke Watanabe, Martin Weber, S. G. Weber, J. P. Wessels, U. Westerhoff, J. Wiechuła, J. Wikne, M. Wilde, G. Wilk, J. Wilkinson, M. C. S. Williams, B. Windelband, Michael Andreas Winn, C. G. Yaldo, Y. Yamaguchi, H. J. Yang, P. Yang, S. Yano, S. Yasnopolskiy, Z. Yin, H. Yokoyama, I. K. Yoo, V. Yurchenko, I. E. Yushmanov, A. Zaborowska, V. Zaccolo, A. Zaman, C. Zampolli, Henrique José Correia Zanoli, S. Zaporozhets, A. Zarochentsev, P. Závada, N. Zaviyalov, H. Zbroszczyk, I. S. Zgura, M. Zhalov, H. Zhang, X. Zhang, Y. Zhang, C. Zhao, N. Zhigareva, D. Zhou, Y. Zhou, Z. Zhou, H. Zhu, J. Zhu, X. Zhu, A. Zichichi, A. Zimmermann, M. B. Zimmermann, G. Zinovjev, M. Zyzak
Software Mentions: 2
Published: about 9 years ago

10.12688/f1000research.6060.1

Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7
Cited by: 3
Author(s): Markus Knipp, Hideaki Ogata, Giancarlo Soavi, Giulio Cerullo, Alessandro Allegri, Stefania Abbruzzetti, Stefano Bruno, Cristiano Viappiani, Axel Bidon‐Chanal, F. Javier Luque
Software Mentions: 2
Published: over 9 years ago

10.1111/febs.15601

Angiotensin‐converting enzyme open for business: structural insights into the subdomain dynamics
Cited by: 16
Author(s): Gyles E. Cozier, Lizelle Lubbe, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: over 3 years ago

10.1111/febs.13930

Hydrogen peroxide‐mediated conversion of coproheme to heme b by HemQ—lessons from the first crystal structure and kinetic studies
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Author(s): Stefan Hofbauer, Georg Mlynek, Lisa Milazzo, Dominic Pühringer, Daniel Maresch, Irene Schaffner, Paul G. Furtmüller, Giulietta Smulevich, Kristina Djinović-Carugo, Christian Obinger
Software Mentions: 2
Published: over 7 years ago

10.1002/1873-3468.13246

Tripeptide binding in a proton‐dependent oligopeptide transporter
Cited by: 20
Author(s): Maria Martinez Molledo, E.M. Quistgaard, Christian Löw
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12644

Structural insights into interactions between viral suppressor of <scp>RNA</scp> silencing protein p19 mutants and small <scp>RNA</scp>s
Cited by: 5
Author(s): Dana V. Foss, N.T. Schirle, Ian J. MacRae, John Paul Pezacki
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2016.00160

Structural Insights into Substrate Recognition by Clostridium difficile Sortase
Cited by: 4
Author(s): Jui-Chieh Yin, Chun-Hsien Fei, Yen-Chen Lo, Y.-Y. Hsiao, Jyun-Cyuan Chang, Jay C. Nix, Yuan-Yu Chang, Lee‐Wei Yang, I-Hsiu Huang, Shuying Wang
Software Mentions: 2
Published: over 7 years ago

10.3389/fcimb.2018.00051

Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Cited by: 13
Author(s): Xiujuan Zhang, Yuanmei Zhu, Hao Hu, Senyan Zhang, Pengfei Wang, Huihui Chong, Jin‐Sheng He, Xinquan Wang, Yuxian He
Software Mentions: 2
Published: about 6 years ago

10.3389/fcimb.2017.00411

Structure-Based Prototype Peptides Targeting the Pseudomonas aeruginosa Type VI Secretion System Effector as a Novel Antibacterial Strategy
Cited by: 14
Author(s): Xiaopan Gao, Zhixia Mu, Bo Qin, Yicheng Sun, Sheng Cui
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.632423

MazEF Toxin-Antitoxin System-Mediated DNA Damage Stress Response in Deinococcus radiodurans
Cited by: 10
Author(s): Jingli Dai, Zijing Chen, Jinfeng Hou, Yudong Wang, Miao Guo, Junhui Cao, Liangyan Wang, Hong Xu, Bing Teng, Ye Zhao
Software Mentions: 2
Published: about 3 years ago

10.3389/fimmu.2021.592447

Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism
Cited by: 4
Author(s): Xiaohui Wei, Song Wang, Zhuolin Li, Zibin Li, Zehui Qu, Suqiu Wang, Baohua Zou, Ruiying Liang, Chun Xia, Nianzhi Zhang
Software Mentions: 2
Published: about 3 years ago

10.3389/fimmu.2020.01529

The Effects of Framework Mutations at the Variable Domain Interface on Antibody Affinity Maturation in an HIV-1 Broadly Neutralizing Antibody Lineage
Cited by: 11
Author(s): Jeffrey Zhou, Hussain Zaidi, Therese Ton, Daniela Fera
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2019.02995

Illumination of PRRSV Cytotoxic T Lymphocyte Epitopes by the Three-Dimensional Structure and Peptidome of Swine Lymphocyte Antigen Class I (SLA-I)
Cited by: 11
Author(s): Xiaocheng Pan, Nianzhi Zhang, Xiaohui Wei, Yinan Jiang, Rong Chen, Qirun Li, Ruiying Liang, Lijie Zhang, Lizhen Ma, Chun Xia
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2021.625808

Structural Basis of VSIG3: The Ligand for VISTA
Cited by: 11
Author(s): Xiaoxue Xie, Caiping Chen, Wenting Chen, Jingwei Jiang, Lanlan Wang, Tingting Li, Hongbin Sun, Jun Li
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.00326

The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding
Cited by: 8
Author(s): Sara Gómez, Javier Querol-García, G. Sanchez-Barron, Marta Subías, Alex González-Alsina, V. Franco-Hidalgo, Sebastián Albertí, Santiago Rodrı́guez de Córdoba, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2019.02079

A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacterium Pseudomonas species AP–3
Cited by: 3
Author(s): Yanjuan Chen, Yiping Chen, Hua Jiang, Deren Lu, Tingting Hu, Gang Bi, Yuping Ran, Bin Yu, Hao Dong, Dan Su
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.01468

Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase From Shigella flexneri
Cited by: 15
Author(s): Xiaopan Gao, Zhixia Mu, Xia Yu, Bo Qin, Justyna Aleksandra Wojdyla, Meitian Wang, Sheng Cui
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.02755

Characterization of a Dimeric Arginase From Zymomonas mobilis ZM4
Cited by: 6
Author(s): Seung-A Hwangbo, Jiwon Kim, Sun-Ju Jung, Kyeong Sik Jin, Jie‐Oh Lee, Ji Soo Kim, Suk-Youl Park
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2020.01178

Structural and Functional Characterization of a Unique AP Endonuclease From Deinococcus radiodurans
Cited by: 6
Author(s): Yuan He, Yiyi Wang, Qin Chen, Ying Xu, Kaiying Cheng, Hong Xu, Bing Teng, Ye Zhao, Liangyan Wang, Yuejin Hua
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.01309

Comparative Study of Two Chondroitin Sulfate/Dermatan Sulfate 4-O-Sulfatases With High Identity
Cited by: 6
Author(s): Shumin Wang, Tianning Su, Qingdong Zhang, Jingwen Guan, Jing He, Lichuan Gu, Fuchuan Li
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmolb.2021.642606

Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus thermophilus
Cited by: 2
Author(s): Julien Cappele, Abbas M. Ali, Nathalie Leblond‐Bourget, Sandrine Mathiot, Tiphaine Dhalleine, Sophie Payot, Martin Savko, Claude Didierjean, F. Favier, Badreddine Douzi
Software Mentions: 2
Published: about 3 years ago

10.3389/fmolb.2017.00068

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp
Cited by: 18
Author(s): E. Krysztofinska, N.J. Evans, Arjun Thapaliya, James W. Murray, Rhodri M. L. Morgan, Santiago Martínez-Lumbreras, Rivka L. Isaacson
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2019.00474

Crystal Structure of the Monomeric Extracellular Domain of α9 Nicotinic Receptor Subunit in Complex With α-Conotoxin RgIA: Molecular Dynamics Insights Into RgIA Binding to α9α10 Nicotinic Receptors
Cited by: 38
Author(s): Marios Zouridakis, Athanasios Papakyriakou, Igor A. Ivanov, Igor E. Kasheverov, Victor I. Tsetlin, Socrates J. Tzartos, Petros Giastas
Software Mentions: 2
Published: about 5 years ago

10.3389/fphar.2017.00681

Target Identification of Mycobacterium tuberculosis Phenotypic Hits Using a Concerted Chemogenomic, Biophysical, and Structural Approach
Cited by: 21
Author(s): Grace Mugumbate, V. Mendes, M. Błaszczyk, Mohamad Sabbah, George Papadatos, Joël Lelièvre, Lluís Ballell, David Barros, C. Abell, Tom L. Blundell, John P. Overington
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2017.00202

Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases
Cited by: 26
Author(s): Dorota Focht, Tristan I. Croll, Bjørn Panyella Pedersen, Poul Nissen
Software Mentions: 2
Published: about 7 years ago

10.3389/fphys.2013.00320

The N-terminal cytoplasmic region of NCBE displays features of an intrinsic disordered structure and represents a novel target for specific drug screening
Cited by: 3
Author(s): Kaare Bjerregaard-Andersen, Harmonie Perdreau‐Dahl, Hanne Guldsten, Jeppe Prætorius, Jan K. Jensen, J. Preben Morth
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2019.01229

Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) From Arabidopsis thaliana
Cited by: 9
Author(s): Aaron H. Liepman, J. Vijayalakshmi, Daniel Peisach, Brian Hulsebus, Laura J. Olsen, Mark A. Saper
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.01737

Expanding the Plant GSTome Through Directed Evolution: DNA Shuffling for the Generation of New Synthetic Enzymes With Engineered Catalytic and Binding Properties
Cited by: 10
Author(s): Evangelia Chronopoulou, Anastassios C. Papageorgiou, Farid S. Ataya, Irini Nianiou-Obeidat, Panagiotis Madesis, Nikolaos E. Labrou
Software Mentions: 2
Published: over 5 years ago

10.3390/genes8100278

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle
Cited by: 8
Author(s): Bohdan Schneider, Paulína Božíková, Petr Čech, Daniel Svozil, Jiří Černý
Software Mentions: 2
Published: over 6 years ago

10.1172/jci.insight.135459

Intrahepatic heteropolymerization of M and Z alpha-1-antitrypsin
Cited by: 13
Author(s): Mattia Laffranchi, Emma Elliston, Elena Miranda, Juan Pérez, Riccardo Ronzoni, Alistair M. Jagger, Nina Heyer-Chauhan, Mark Brantly, Annamaria Fra, David A. Lomas, James A. Irving
Software Mentions: 2
Published: almost 4 years ago

10.1107/S0021889811041161

iotbx.cif: a comprehensive CIF toolbox
Cited by: 539
Author(s): Richard J. Gildea, Luc J. Bourhis, Oleg V. Dolomanov, Ralf W. Grosse‐Kunstleve, Horst Puschmann, Paul D. Adams, Judith A. K. Howard
Software Mentions: 2
Published: over 12 years ago

10.1107/S1600576715010432

Programming new geometry restraints: parallelity of atomic groups
Cited by: 13
Author(s): Oleg Sobolev, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: almost 9 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: almost 9 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: almost 9 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1005248

An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum
Cited by: 31
Author(s): Adela S. Oliva Chávez, J.W. Fairman, Roderick F. Felsheim, Curtis M. Nelson, Michael J. Herron, Lee Ann Higgins, Nicole Y. Burkhardt, Jonathan D. Oliver, Todd W. Markowski, Timothy J. Kurtti, Thomas E. Edwards, Ulrike G. Munderloh
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1005351

Mycobacterial Metabolic Syndrome: LprG and Rv1410 Regulate Triacylglyceride Levels, Growth Rate and Virulence in Mycobacterium tuberculosis
Cited by: 76
Author(s): Amanda J. Martinot, Mary F. Farrow, Lu Bai, Emilie Layre, Tan-Yun Cheng, Jennifer Tsai, Jahangir Iqbal, John W. Annand, Zuri A. Sullivan, M. Mahmood Hussain, James C. Sacchettini, D. Branch Moody, Jessica C. Seeliger, Eric J. Rubín
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1006098

Receptor Activation of HIV-1 Env Leads to Asymmetric Exposure of the gp41 Trimer
Cited by: 31
Author(s): Mukta D. Khasnis, Konstantine Halkidis, Anshul Bhardwaj, Michael J. Root
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1006231

Structure of a pentameric virion-associated fiber with a potential role in Orsay virus entry to host cells
Cited by: 10
Author(s): Yingying Fan, Yusong R. Guo, Yuan Wang, Ying Zhou, Matthew V. Holt, Tao Wang, Borries Demeler, Nicolas L. Young, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1006400

Structural insights into reptarenavirus cap-snatching machinery
Cited by: 27
Author(s): Maria Rosenthal, Nadja Gogrefe, Dominik Vogel, Juan Reguera, Bianka Rauschenberger, Stephen Cusack, Stephan Günther, Sophia Reindl
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1006714

A mobile loop near the active site acts as a switch between the dual activities of a viral protease/deubiquitinase
Cited by: 15
Author(s): Isabelle Jupin, Maya Ayach, Lucile Jomat, Sonia Fieulaine, Stéphane Bressanelli
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1006935

Structural basis for recognition of the central conserved region of RSV G by neutralizing human antibodies
Cited by: 45
Author(s): Harrison G. Jones, Tina Ritschel, Gabriel Pascual, Just P. J. Brakenhoff, Elissa Keogh, Polina Furmanova-Hollenstein, Ellen Lanckacker, Jehangir S. Wadia, M.S.A. Gilman, R. Anthony Williamson, Dirk Roymans, Angélique B. van ’t Wout, Johannes P. M. Langedijk, Jason S. McLellan
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1007476

Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress
Cited by: 10
Author(s): Alfredo J. Guerra, Ou Zhang, Constance M. Bahr, My Hang Huynh, James Delproposto, William Clay Brown, Z. Wawrzak, Nicole M. Koropatkin, Vern B. Carruthers
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1007944

Alternative conformations of a major antigenic site on RSV F
Cited by: 25
Author(s): Harrison G. Jones, Michael B. Battles, Chun-Chi Lin, Siro Bianchi, Davide Corti, Jason S. McLellan
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1008323

Structural basis of Fusarium myosin I inhibition by phenamacril
Cited by: 17
Author(s): Yuxin Zhou, Xuemei Zhou, Yuanping Gong, Yuanye Zhu, Xiaoman Cao, J.S. Brunzelle, H. Eric Xu, Mingguo Zhou, Karsten Melcher, Feng Zhang
Software Mentions: 2
Published: about 4 years ago

Projects: cran: PHENIX

Papers Mentioning PHENIX 2,287