cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-00610-0

Novel insights into the interaction of UBA5 with UFM1 via a UFM1-interacting sequence
Cited by: 21
Author(s): P. Padala, Walaa Oweis, Bayan Mashahreh, Nadine Soudah, Einav Cohen-Kfir, Emily A. Todd, Christopher E. Berndsen, Reuven Wiener
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00761-0

Hydroxyethyl cellulose matrix applied to serial crystallography
Cited by: 73
Author(s): Michihiro Sugahara, Takanori Nakane, Tetsuya Masuda, Mamoru Suzuki, Shiro Inoue, Changyong Song, Rie Tanaka, Toru Nakatsu, Eiichi Mizohata, Fumiaki Yumoto, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Keiji Numata, Eriko Nango, So Iwata
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00919-w

Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes
Cited by: 19
Author(s): Pedro Bule, Victor D. Alves, Vered Israeli-Ruimy, Ana Luı́sa Carvalho, L.M.A. Ferreira, Steven P. Smith, Harry J. Gilbert, Shabir Najmudin, Edward A. Bayer, Carlos M. G. A. Fontes
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.60924

Uncovering the basis of protein-protein interaction specificity with a combinatorially complete library
Cited by: 34
Author(s): Thúy-Lan Võ Lite, Robert A. Grant, Isabel Nocedal, Megan L Littlehale, Monica S. Guo, Michael T. Laub
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.03206

Serum amyloid A is a retinol binding protein that transports retinol during bacterial infection
Cited by: 105
Author(s): M.G. Derebe, Clare M Zlatkov, Sureka Gattu, Kelly A. Ruhn, Shipra Vaishnava, Gretchen E. Diehl, John B. MacMillan, Noelle S. Williams, Lora V. Hooper
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.28909

Computational design of environmental sensors for the potent opioid fentanyl
Cited by: 66
Author(s): Matthew J. Bick, Per Greisen, Kevin J. Morey, Mauricio S Antunes, Lawrence A. David, Banumathi Sankaran, Luc Reymond, Kai Johnsson, June I. Medford, David Baker
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.07433

The structure of plant photosystem I super-complex at 2.8 Å resolution
Cited by: 161
Author(s): Yuval Mazor, Anna Borovikova, Nathan Nelson
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-017-02044-0

Structural insights into a 20.8-kDa tegumental-allergen-like (TAL) protein from Clonorchis sinensis
Cited by: 9
Author(s): Chang Hwa Jo, Jonghyeon Son, Sulhee Kim, Takashi Oda, Jae-Hoon Kim, Myoung Ro Lee, Mamoru Sato, Hyun Tae Kim, Satoru Unzai, Sam Yong Park, Kwang Yeon Hwang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02153-w

Lipoxygenase 2 from Cyanothece sp. controls dioxygen insertion by steric shielding and substrate fixation
Cited by: 13
Author(s): Julia Newie, Piotr Neumann, Martin Werner, Ricardo A. Mata, Ralf Ficner, Ivo Feußner
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms17091539

Characterization of Post-Translational Modifications to Calsequestrins of Cardiac and Skeletal Muscle
Cited by: 13
Author(s): K.M. Lewis, Gerhard R. Munske, S.S. Byrd, Jeehoon Kang, Hyun Jai Cho, Eduardo Rı́os, ChulHee Kang
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.20797

Structure and dynamics underlying elementary ligand binding events in human pacemaking channels
Cited by: 41
Author(s): Marcel P. Goldschen-Ohm, Vadim A. Klenchin, David S. White, John Cowgill, Qiang Cui, Randall H. Goldsmith, Baron Chanda
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0025226

Structural Basis of Cooperativity in Human UDP-Glucose Dehydrogenase
Cited by: 12
Author(s): V. Rajakannan, Hui Sun Lee, Seon Ha Chong, Han Bong Ryu, Ji Young Bae, Eun Young Whang, Jae-Wan Huh, Sung Woo Cho, Lin Woo Kang, Han Choe, Robert Robinson
Software Mentions: 1
Published: about 15 years ago

10.1107/S0909049513020700

X-ray structure determination and deuteration of nattokinase
Cited by: 12
Author(s): Yasuhide Yanagisawa, Toshiyuki Chatake, Sawa Naito, Tadanori Ohsugi, Chieko Yatagai, Hiroyuki Sumi, Akio Kawaguchi, Kaori Chiba-Kamosida, Megumi Ogawa, Tatsumi Adachi, Yukio Morimoto
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-017-03034-y

Pwp2 mediates UTP-B assembly via two structurally independent domains
Cited by: 9
Author(s): Fanny Boissier, Christina Schmidt, Jan Linnemann, Sébastien Fribourg, Jorge Pérez-Fernández
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03768-9

Crystal structure of the DNA-binding domain of Myelin-gene Regulatory Factor
Cited by: 11
Author(s): Xiangkai Zhen, Bowen Li, Fang Hu, Shufeng Yan, Gabriele Meloni, Hui‐Liang Li, Ning Shi
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03567-2

High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway
Cited by: 26
Author(s): Seiji Ishii, Kenji Fukui, Satoshi Yokoshima, Kazuo Kumagai, Youko Beniyama, Tetsuya Kodama, Tohru Fukuyama, Takayoshi Okabe, Tetsuo Nagano, Hirotatsu Kojima, Takayuki Yano
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0113224

Electrostatic Effects in the Folding of the SH3 Domain of the c-Src Tyrosine Kinase: pH-Dependence in 3D-Domain Swapping and Amyloid Formation
Cited by: 24
Author(s): Julio Bacarizo, Sergio Martínez‐Rodríguez, José M. Martín-García, Montserrat Andújar‐Sánchez, Emilia Ortiz‐Salmerón, José L. Neira, A. Cámara-Artigas
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-017-05889-7

An engineered protein antagonist of K-Ras/B-Raf interaction
Cited by: 54
Author(s): Monique J. Kauke, Michael W. Traxlmayr, Jillian A. Parker, Jonathan D. Kiefer, Ryan Knihtila, John H. McGee, Greg Verdine, Carla Mattos, K. Dane Wittrup
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.66657

Structure-guided microbial targeting of antistaphylococcal prodrugs
Cited by: 7
Author(s): Jenna Miller, Ishaan Shah, Jayda Hatten, Yasaman Barekatain, Elizabeth A. Mueller, Ahmed Moustafa, Rachel L. Edwards, Cynthia S. Dowd, Paul J. Planet, Florian Müller, Joseph M. Jez, Audrey Odom John
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.31486

Pi-Pi contacts are an overlooked protein feature relevant to phase separation
Cited by: 517
Author(s): Robert Vernon, P. Andrew Chong, Brian Tsang, Tae Hun Kim, Alaji Bah, Patrick Farber, Hong Lin, Julie D. Forman‐Kay
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-06576-3

The Tnfaip8-PE complex is a novel upstream effector in the anti-autophagic action of insulin
Cited by: 18
Author(s): Ji Soo Kim, Jimin Park, Mi Sun Kim, Ji Young Ha, Ye Won Jang, Dongkun Shin, Jin H. Son
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.11297

Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha
Cited by: 34
Author(s): Janine Weber, Han Bao, Christoph Hartlmüller, Zhiqin Wang, Almut Windhager, Robert Janowski, Tobias Madl, Peng Jin, Dierk Niessing
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.14158

Viral hijacking of a replicative helicase loader and its implications for helicase loading control and phage replication
Cited by: 14
Author(s): Iris V. Hood, James M. Berger
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.26111

A widespread family of serine/threonine protein phosphatases shares a common regulatory switch with proteasomal proteases
Cited by: 23
Author(s): Niels Bradshaw, V.M. Levdikov, Christina M. Zimanyi, Rachelle Gaudet, Anthony J. Wilkinson, Richard Losick
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-07755-y

Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations
Cited by: 20
Author(s): R.M. Counago, C.K. Allerston, P. Savitsky, Hátylas Azevedo, Paulo H. Godoi, Carrow Wells, Alessandra Mascarello, F. Gama, Katlin B. Massirer, William J. Zuercher, Cristiano Ruch Werneck Guimarães, O. Gileadi
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-07887-1

Crystal Structure of MpPR-1i, a SCP/TAPS protein from Moniliophthora perniciosa, the fungus that causes Witches’ Broom Disease of Cacao
Cited by: 11
Author(s): Renata Moro Baroni, Zhipu Luo, Rabih Darwiche, Elissa M. Hudspeth, Roger Schneiter, Gonçalo Amarante Guimarães Pereira, Jorge Maurı́cio Costa Mondego, Oluwatoyin A. Asojo
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18071464

Structural Elements Recognized by Abacavir-Induced T Cells
Cited by: 19
Author(s): Daniel Yerly, Y.A. Pompeu, Ryan J. Schutte, Klara Kristin Eriksson, Anette Strhyn, A.W. Bracey, Søren Buus, David A. Ostrov
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms19092796

CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex
Cited by: 9
Author(s): Yu‐Wen Chen, Roshan Satange, Pei-Ching Wu, Cyong-Ru Jhan, Chung-ke Chang, Kuang‐Ren Chung, Michael J. Waring, Sheng-Wei Lin, Li-Ching Hsieh, Ming-Hon Hou
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-09538-x

Structural basis for therapeutic inhibition of influenza A polymerase PB2 subunit
Cited by: 15
Author(s): Xiaolei Ma, Lili Xie, Charles Wartchow, Robert Warne, Yongjin Xu, Alexey Rivkin, David C. Tully, S. Shia, Kyoko Uehara, Dianna M. Baldwin, Gladys T. Muiru, Weidong Zhong, Isabel Zaror, Dirksen E. Bussiere, Vincent H. J. Léonard
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-10249-6

The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery
Cited by: 8
Author(s): Marie S. Prevost, Nikos Pinotsis, Maud Dumoux, Richard Hayward, Gabriel Waksman
Software Mentions: 1
Published: about 9 years ago

10.1016/j.chom.2020.06.003

Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor
Cited by: 15
Author(s): Nicholas C. Wu, Sarah F. Andrews, Julie E. Raab, Sarah O’Connell, Chaim A. Schramm, Xintao Ding, Michael Chambers, Kwanyee Leung, Lingshu Wang, Yi Zhang, John R. Mascola, Daniel C. Douek, Julie E. Ledgerwood, Adrian B. McDermott, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-11031-4

Structural basis for CRMP2-induced axonal microtubule formation
Cited by: 38
Author(s): Shinsuke Niwa, Fumio Nakamura, Yuri Tomabechi, Mari Aoki, Hideki Shigematsu, Takashi Matsumoto, Atsushi Yamagata, Shuya Fukai, Nobutaka Hirokawa, Yoshio Goshima, Mikako Shirouzu, Ryo Nitta
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-11542-0

Laminarinase from Flavobacterium sp. reveals the structural basis of thermostability and substrate specificity
Cited by: 20
Author(s): Hui‐Min Qin, Takuya Miyakawa, Akira Inoue, Akira Nakamura, Ryuji Nishiyama, Takao Ojima, Masaru Tanokura
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12409-0

The crystal structure of the regulatory domain of the human sodium-driven chloride/bicarbonate exchanger
Cited by: 7
Author(s): Carolina Alvadia, T. Sommer, Kaare Bjerregaard-Andersen, Helle Hasager Damkier, Michele Montrasio, Christian Aalkjær, J. Preben Morth
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12186-w

Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA
Cited by: 15
Author(s): Bo-Na Kim, Minsang Shin, Soonhoi Ha, Suk-Youl Park, Pil-Won Seo, Andreas Hofmann, Ji Soo Kim
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13669-6

Structural and Mechanistic Analysis of Drosophila melanogaster Agmatine N-Acetyltransferase, an Enzyme that Catalyzes the Formation of N-Acetylagmatine
Cited by: 7
Author(s): Daniel R. Dempsey, Derek A. Nichols, Matthew R. Battistini, O.A. Pemberton, Santiago Rodriguez Ospina, Xiujun Zhang, Anne-Marie Carpenter, Brian G. O’Flynn, James W. Leahy, Ankush Kanwar, Eric M. Lewandowski, Yu Chen, David J. Merkler
Software Mentions: 1
Published: about 9 years ago

10.1016/j.jsb.2021.107752

Crystal structure of the anti-CRISPR repressor Aca2
Cited by: 6
Author(s): B. F. Usher, Nils Birkholz, Izaak N Beck, Robert D. Fagerlund, Simon A. Jackson, Peter C. Fineran, Tim R. Blower
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-14372-2

Helicobacter pylori chemoreceptor TlpC mediates chemotaxis to lactate
Cited by: 54
Author(s): Mayra A. Machuca, Kevin S. Johnson, Yu C. Liu, David Steer, Karen M. Ottemann, Anna Roujeinikova
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14448-z

Structural dissection of human metapneumovirus phosphoprotein using small angle x-ray scattering
Cited by: 19
Author(s): Max Renner, Guido C. Paesen, Claire M. Grison, Sébastien Granier, Jonathan M. Grimes, C. Leyrat
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14797-9

Modular endolysin of Burkholderia AP3 phage has the largest lysozyme-like catalytic subunit discovered to date and no catalytic aspartate residue
Cited by: 25
Author(s): Barbara Maciejewska, Karol Źrubek, Akbar Espaillat, M. Wiśniewska, Krzysztof P. Rembacz, Felipe Cava, Grzegorz Dubin, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 9 years ago

10.1128/JVI.00923-19

The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation
Cited by: 53
Author(s): Daniel Wrapp, Jason S. McLellan
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41421-021-00284-z

Molecular insights into the human ABCB6 transporter
Cited by: 14
Author(s): Guangyuan Song, Sensen Zhang, Mengqi Tian, Laixing Zhang, Runyu Guo, Wei Zhuo, Maojun Yang
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.64690

Mitochondrial copper and phosphate transporter specificity was defined early in the evolution of eukaryotes
Cited by: 19
Author(s): Xinyu Zhu, Aren Boulet, Katherine M. Buckley, Casey B. Phillips, Micah G. Gammon, Laura E Oldfather, Stanley A. Moore, Scot C. Leary, Paul A. Cobine
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.62772

Cryo-EM structure of the calcium release-activated calcium channel Orai in an open conformation
Cited by: 33
Author(s): Xiaowei Hou, Ian R Outhwaite, Leanne Pedi, Stephen B. Long
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.63586

The allosteric modulation of complement C5 by knob domain peptides
Cited by: 17
Author(s): Alex Macpherson, Maisem Laabei, Zainab Ahdash, Melissa A. Graewert, James R. Birtley, Monika-Sarah E. D. Schulze, S.J. Crennell, Sarah Robinson, Ben Holmes, Vladas Oleinikovas, Per H. Nilsson, James Snowden, Victoria Ellis, Tom Eirik Mollnes, Charlotte Deane, Dmitri I. Svergun, Alastair D. G. Lawson, Jean M. H. van den Elsen
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20133247

Crystal Structure of Phosphoserine BlaC from Mycobacterium tuberculosis Inactivated by Bis(Benzoyl) Phosphate
Cited by: 1
Author(s): Timothy W. Moural, Dawanna S. White, Cindy J. Choy, ChulHee Kang, Clifford E. Berkman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-16607-8

Structural insights into the potency of SK channel positive modulators
Cited by: 19
Author(s): Young Woo Nam, Razan Orfali, Tingting Liu, Kunqian Yu, Meng Cui, Heike Wulff, Miao Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-17677-4

Structural insight into a CE15 esterase from the marine bacterial metagenome
Cited by: 17
Author(s): Concetta De Santi, Osman Gani, Ronny Helland, Adele Kim Williamson
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-16876-3

Insulin in motion: The A6-A11 disulfide bond allosterically modulates structural transitions required for insulin activity
Cited by: 27
Author(s): Bianca J. van Lierop, Shee Chee Ong, Alessia Belgi, Carlie Delaine, Sofianos Andrikopoulos, Naomi L. Haworth, John G. Menting, Michael C. Lawrence, Andrea J. Robinson, Briony E. Forbes
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.33572

Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme
Cited by: 41
Author(s): Zhening Zhang, Wenyuan Liang, L.J. Bailey, Yong Zi Tan, Hui Wei, Andrew Wang, M Fărcăşanu, Virgil A Woods, Lauren A. McCord, David E. Lee, Weifeng Shang, Rébecca Deprez-Poulain, Benoît Déprez, David R. Liu, Shohei Koide, Anthony A. Kossiakoff, Li Sheng, Bridget Carragher, Clinton S. Potter, Wei‐Jen Tang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-18045-y

A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY
Cited by: 59
Author(s): Daniel J. Scott, Natalie Gunn, Kelvin Junwei Yong, Verena C. Wimmer, Nicholas A. Veldhuis, Leesa M. Challis, Mouna Haidar, Steven Petrou, Ross A. D. Bathgate, Michael D. W. Griffin
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.11860

Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence
Cited by: 76
Author(s): Udo Heintz, Ilme Schlichting
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-018-20067-z

Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis
Cited by: 22
Author(s): Michael Hall, Yoshinori Hasegawa, Fuminobu Yoshimura, Karina Persson
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.47405

Ctf4 organizes sister replisomes and Pol α into a replication factory
Cited by: 41
Author(s): Ziming Yuan, Roxana E. Georgescu, Ruda de Luna Almeida Santos, Dongke Zhang, Lin Bai, Nina Y. Yao, Gongpu Zhao, Mike O'Donnell, Huilin Li
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-20634-4

Structural and mechanistic divergence of the small (p)ppGpp synthetases RelP and RelQ
Cited by: 46
Author(s): Wieland Steinchen, Marian Samuel Vogt, Florian Altegoer, Pietro Ivan Giammarinaro, Petra Horvatek, Christiane Wolz, Gert Bange
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.44760

Structural basis of phosphatidylcholine recognition by the C2–domain of cytosolic phospholipase A2α
Cited by: 26
Author(s): Yoshinori Hirano, Yong-Guang Gao, Daniel J. Stephenson, Ngoc Vu, Lucy Malinina, Dhirendra K. Simanshu, Charles E. Chalfant, Dinshaw J. Patel, Rhoderick E. Brown
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.09066

Structural basis of interprotein electron transfer in bacterial sulfite oxidation
Cited by: 17
Author(s): Aaron P. McGrath, Elise M Laming, Gema Alejandra Botana García, Marc Kvansakul, J.M. Guss, Jill Trewhella, Benoît Calmes, Paul V. Bernhardt, Graeme R. Hanson, Ulrike Kappler, M.J. Maher
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.56664

Atomic structure of a mitochondrial complex I intermediate from vascular plants
Cited by: 43
Author(s): María Maldonado, Abhilash Padavannil, Long Zhou, Fei Guo, James A. Letts
Software Mentions: 1
Published: about 6 years ago

10.1038/s41421-018-0044-z

Structural visualization of RNA polymerase III transcription machineries
Cited by: 55
Author(s): Yanping Han, Yan Cheng, Susan Fishbain, Ivaylo Ivanov, Yuan He
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-21476-w

6-Thioguanine is a noncompetitive and slow binding inhibitor of human deubiquitinating protease USP2
Cited by: 40
Author(s): Shang-Ju Chuang, Sha-Yen Cheng, Hui-Chi Tang, Chee‐Ching Sun, Chi-Yuan Chou
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21955-0

Understanding the Structure, Multimerization, Subcellular Localization and mC Selectivity of a Genomic Mutator and Anti-HIV Factor APOBEC3H
Cited by: 36
Author(s): Fumiaki Ito, Hanjing Yang, Xiao Xiao, Shuxing Li, Aaron Wolfe, Brett Zirkle, В. М. Арутюнян, Xiaojiang S. Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41421-021-00283-0

Crystal structure of the INTS3/INTS6 complex reveals the functional importance of INTS3 dimerization in DSB repair
Cited by: 9
Author(s): Jia Yu, Zhongtao Cheng, S.R. Bharath, Qingguo Sun, Nannan Su, Jun Huang, Haiwei Song
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.11911

Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome
Cited by: 30
Author(s): Qianglin Fang, Ping Chen, Mingzhu Wang, Junshun Fang, Na Yang, Guohong Li, Rui-Ming Xu
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms20174245

Structural Insights into the Interaction of Cytochrome P450 3A4 with Suicide Substrates: Mibefradil, Azamulin and 6′,7′-Dihydroxybergamottin
Cited by: 16
Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.33067

Crystal structure of intraflagellar transport protein 80 reveals a homo-dimer required for ciliogenesis
Cited by: 30
Author(s): Michael Täschner, Anna Lorentzen, André Mourão, Toby Collins, Grace Freke, Dale Moulding, J. Basquin, Dagan Jenkins, Esben Lorentzen
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms20174301

Active Site Architecture and Reaction Mechanism Determination of Cold Adapted β-d-galactosidase from Arthrobacter sp. 32cB
Cited by: 11
Author(s): Maria Rutkiewicz, A. Bujacz, Marta Wanarska, Anna Wierzbicka-Woś, Hubert Cieśliński
Software Mentions: 1
Published: about 7 years ago

10.1016/j.jsb.2016.07.007

The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region
Cited by: 3
Author(s): Shintaro Aibara, Xiao Chen Bai, Murray Stewart
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-018-25237-7

Structures of Angptl3 and Angptl4, modulators of triglyceride levels and coronary artery disease
Cited by: 33
Author(s): Ekaterina Biterova, Mariam Esmaeeli, Heli I. Alanen, Mirva J. Saaranen, Lloyd W. Ruddock
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25231-z

Inherent flexibility of CLIC6 revealed by crystallographic and solution studies
Cited by: 15
Author(s): Alisa Ferofontov, Roi Strulovich, Milit Marom, Moshe Giladi, Yoni Haitin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25487-5

Patient-derived mutations within the N-terminal domains of p85α impact PTEN or Rab5 binding and regulation
Cited by: 12
Author(s): Paul Mellor, Jeremy Marshall, Xuan Ruan, Dielle E. Whitecross, Rebecca Ross, Margaret A. Knowles, Stanley A. Moore, Deborah H. Anderson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25157-6

Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators
Cited by: 13
Author(s): Sabina Sarvan, François Charih, Momen Askoura, James Butcher, J.S. Brunzelle, Alain Stintzi, Jean Couture
Software Mentions: 1
Published: over 8 years ago

10.1107/S0909049513022164

Creation and structure determination of an artificial protein with three complete sequence repeats
Cited by: 2
Author(s): Motoyasu Adachi, R Shimizu, Ryota Kuroki, Michael Blaber
Software Mentions: 1
Published: about 13 years ago

10.1038/s41421-018-0009-2

Crystal structure of the human 5-HT1B serotonin receptor bound to an inverse agonist
Cited by: 59
Author(s): Wanchao Yin, Xin Zhou, Dehua Yang, Parker W. de Waal, Meitian Wang, Antao Dai, Xiaoqing Cai, Chia‐Ying Huang, Ping Liu, Xiaoxi Wang, Yuanyuan Yin, Bo Liu, Yu Zhou, Jiang Wang, Hong Liu, Martin Caffrey, Karsten Melcher, Yechun Xu, Mingwei Wang, Hao Xu, Yi Jiang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0146164

A Streamlined, Automated Protocol for the Production of Milligram Quantities of Untagged Recombinant Rat Lactate Dehydrogenase A Using ÄKTAxpressTM
Cited by: 7
Author(s): Matthew W. Nowicki, Elizabeth A. Blackburn, I.W. McNae, Martin A. Wear
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.37774

Crystal structure of the full Swi2/Snf2 remodeler Mot1 in the resting state
Cited by: 3
Author(s): A. Butryn, Stephan Woike, Savera J. Shetty, David T. Auble, Karl‐Peter Hopfner
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-28599-0

Understanding the indirect DNA read-out specificity of I-CreI Meganuclease
Cited by: 12
Author(s): Jesús Prieto, Pilar Negrete Redondo, Blanca López-Méndez, Marco D’Abramo, Nekane Merino, Francisco J. Blanco, P. Duchateau, Guillermo Montoya, Rafael Molina
Software Mentions: 1
Published: over 8 years ago

10.1016/j.yjsbx.2021.100044

Structural basis of enzyme activity regulation by the propeptide of l-lysine α-oxidase precursor from Trichoderma viride
Cited by: 2
Author(s): Masaki Kawamura, Norihisa Ito, Yuya Matsumoto, Masaya Saito, Takashi Tamura, Hitoshi Kusakabe, Kenji Inagaki, Katsumi Imada
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.chembiol.2018.11.001

(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition
Cited by: 44
Author(s): J.G.M. Rack, Antonio Ariza, Bryon Drown, Callum Henfrey, Edward Bartlett, Tomohiro Shirai, Paul J. Hergenrother, Ivan Ahel
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-28783-2

A V-to-F substitution in SK2 channels causes Ca2+ hypersensitivity and improves locomotion in a C. elegans ALS model
Cited by: 12
Author(s): Young‐Woo Nam, Sabia N. Baskoylu, Dimitris Gazgalis, Razan Orfali, Meng Cui, Anne C. Hart, Miao Zhang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-29182-3

Electrostatic Tuning of the Ligand Binding Mechanism by Glu27 in Nitrophorin 7
Cited by: 4
Author(s): Stefania Abbruzzetti, Alessandro Allegri, Axel Bidon‐Chanal, Hideaki Ogata, Giancarlo Soavi, Giulio Cerullo, Stefano Bruno, Chiara Montali, F. Javier Luque, Cristiano Viappiani
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-28918-5

Crystal structure of an L chain optimised 14F7 anti-ganglioside Fv suggests a unique tumour-specificity through an unusual H-chain CDR3 architecture
Cited by: 6
Author(s): Kaare Bjerregaard-Andersen, Hedda Johannesen, Noha Abdel-Rahman, J.E. Heggelund, Helene Mykland Hoås, Fana Abraha, Paula A. Bousquet, Lene Støkken Høydahl, D. Burschowsky, Gertrudis Rojas, Stefan Oscarson, Geir Åge Løset, Ute Krengel
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-29500-9

Structural determinants of the catalytic mechanism of Plasmodium CCT, a key enzyme of malaria lipid biosynthesis
Cited by: 6
Author(s): Ewelina Guca, Gergely Nagy, F. Hajdu, Lívia Marton, Richárd Izrael, François Hoh, Yinshan Yang, Henri Vial, Beáta G. Vértessy, Jean-François Guichou, Rachel Cerdan
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-29884-8

FliS/flagellin/FliW heterotrimer couples type III secretion and flagellin homeostasis
Cited by: 16
Author(s): Florian Altegoer, Sampriti Mukherjee, Wieland Steinchen, Patricia Bedrunka, Uwe Linne, Daniel B. Kearns, Gert Bange
Software Mentions: 1
Published: about 8 years ago

10.1016/j.chembiol.2017.08.021

Structure of the Guanidine III Riboswitch
Cited by: 43
Author(s): Lin Huang, Jia Wang, Timothy J. Wilson, David M.J. Lilley
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.43542

Automated cryo-EM structure refinement using correlation-driven molecular dynamics
Cited by: 77
Author(s): Maxim Igaev, Carsten Kutzner, Lars V. Bock, Andrea C. Vaiana, Helmut Grubmüller
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-30191-5

Structural Analysis of Glutamine Synthetase from Helicobacter pylori
Cited by: 12
Author(s): Hyun Kyu Joo, Young Woo Park, Young Yoon Jang, Jae Young Lee
Software Mentions: 1
Published: about 8 years ago

10.1016/j.chembiol.2017.05.014

The Structure of the Guanidine-II Riboswitch
Cited by: 53
Author(s): Lin Huang, Jia Wang, David M.J. Lilley
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-30951-3

Bonsai Gelsolin Survives Heat Induced Denaturation by Forming β-Amyloids which Leach Out Functional Monomer
Cited by: 12
Author(s): Maulik D. Badmalia, Pankaj Sharma, Shiv Pratap Singh Yadav, Samiksha Singh, Neeraj Khatri, Renu Garg, . Ashish
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-30796-w

Structural basis for polymerase η–promoted resistance to the anticancer nucleoside analog cytarabine
Cited by: 10
Author(s): Olga Rechkoblit, Jayati Roy Choudhury, Angeliki Buku, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-31098-x

Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus
Cited by: 11
Author(s): Erik R. Nöldeke, Lena M. Muckenfuss, Volker Niemann, Anna Müller, Elena Störk, Georg Zocher, Tanja Schneider, Thilo Stehle
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-31676-z

Structural Analysis of Redox-sensing Transcriptional Repressor Rex from Thermotoga maritima
Cited by: 7
Author(s): Young Woo Park, Young Yoon Jang, Hyun Kyu Joo, Jae Young Lee
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-31812-9

The first crystal structure of a DNA-free nuclear receptor DNA binding domain sheds light on DNA-driven allostery in the glucocorticoid receptor
Cited by: 26
Author(s): Filipp Frank, C. Denise Okafor, Eric A. Ortlund
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-31961-x

Structural insights into antigen recognition of an anti-β-(1,6)-β-(1,3)-D-glucan antibody
Cited by: 7
Author(s): Kwang Hoon Sung, Jörn Josewski, Stefan Dübel, Wulf Blankenfeldt, Udo Rau
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.03650

Mechanistic insight into the conserved allosteric regulation of periplasmic proteolysis by the signaling molecule cyclic-di-GMP
Cited by: 40
Author(s): Debashree Chatterjee, Richard B. Cooley, Chelsea D. Boyd, Ryan A. Mehl, George A. O’Toole, Holger Sondermann
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-018-31997-z

X-ray structure of full-length human RuvB-Like 2 – mechanistic insights into coupling between ATP binding and mechanical action
Cited by: 15
Author(s): Sara T.N. Silva, José A. Brito, Rocío Arranz, Carlos Óscar S. Sorzano, Christine Ebel, James Doutch, Mark D. Tully, José Marı́a Carazo, José L. Carrascosa, Pedro M. Matías, Tiago M. Bandeiras
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-32218-3

Structural cycle of the Thermus thermophilus PilF ATPase: the powering of type IVa pilus assembly
Cited by: 20
Author(s): Richard F. Collins, V. Karuppiah, C. Alistair Siebert, Rana Dajani, Angela Thistlethwaite, Jeremy P. Derrick
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-32379-1

Acylated-acyl carrier protein stabilizes the Pseudomonas aeruginosa WaaP lipopolysaccharide heptose kinase
Cited by: 8
Author(s): Naomi N. K. Kreamer, Rajiv Chopra, Ruth E. Caughlan, Doriano Fabbro, Eric Fang, Patricia Gee, Ian Hunt, Min Li, Barbara C. Leon, Lionel Muller, Brian Vash, Angela Woods, Travis Stams, Charles R. Dean, Tsuyoshi Uehara
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-32967-1

A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily
Cited by: 5
Author(s): Rachel Fellows, Christopher M. Russo, Catarina S. Silva, Soon Goo Lee, Joseph M. Jez, John D. Chisholm, Chloë Zubieta, Max H. Nanao
Software Mentions: 1
Published: about 8 years ago

10.1016/j.cell.2011.01.008

Structural Basis of the 9-Fold Symmetry of Centrioles
Cited by: 315
Author(s): Daiju Kitagawa, Ioannis Vakonakis, Natacha Olieric, Manuel Hilbert, Debora Keller, V. Oliéric, Miriam Bortfeld, Michèle C. Erat, Isabelle Flückiger, Pierre Gönczy, Michel O. Steinmetz
Software Mentions: 1
Published: over 15 years ago

10.7554/eLife.08709

Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor
Cited by: 226
Author(s): Abbas Maqbool, Hiromasa Saitoh, Marina Franceschetti, Clare E. M. Stevenson, Aiko Uemura, Hiromitsu Kanzaki, Sophien Kamoun, Ryohei Terauchi, Mark J. Banfield
Software Mentions: 1
Published: about 11 years ago

Projects: cran: PHENIX

Science Score: 75/100

Penalties:

Papers Mentioning PHENIX 2,287