cran: PHENIX | Projects | Ecosyste.ms: Papers

10.7554/eLife.61503

Structure of the human core transcription-export complex reveals a hub for multivalent interactions
Cited by: 38
Author(s): Thomas Pühringer, Ulrich Hohmann, Laura Fin, Belén Pacheco-Fiallos, Ulla Schellhaas, Julius Brennecke, Clemens Plaschka
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-018-28783-2

A V-to-F substitution in SK2 channels causes Ca2+ hypersensitivity and improves locomotion in a C. elegans ALS model
Cited by: 12
Author(s): Young‐Woo Nam, Sabia N. Baskoylu, Dimitris Gazgalis, Razan Orfali, Meng Cui, Anne C. Hart, Miao Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22179128

Coordination of Di-Acetylated Histone Ligands by the ATAD2 Bromodomain
Cited by: 9
Author(s): Chiara M. Evans, Margaret Phillips, Kiera L. Malone, Marco Tonelli, Gabriel Cornilescu, Claudia C. Cornilescu, Simon J. Holton, Mátyás Gorjánácz, Liping Wang, Samuel Carlson, Jay C. Nix, Borries Demeler, John L. Markley, Karen C. Glass
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.36931

Cryo-EM structure of the polycystin 2-l1 ion channel
Cited by: 42
Author(s): Raymond E. Hulse, Zongli Li, Rick Huang, Jin Zhang, David E. Clapham
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-32218-3

Structural cycle of the Thermus thermophilus PilF ATPase: the powering of type IVa pilus assembly
Cited by: 20
Author(s): Richard F. Collins, V. Karuppiah, C. Alistair Siebert, Rana Dajani, Angela Thistlethwaite, Jeremy P. Derrick
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.01030

Bub3 reads phosphorylated MELT repeats to promote spindle assembly checkpoint signaling
Cited by: 196
Author(s): Ivana Primorac, John R. Weir, Elena Chiroli, Fridolin Groß, Ingrid Hoffmann, Suzan van Gerwen, Andrea Ciliberto, Andrea Musacchio
Software Mentions: 1
Published: about 11 years ago

10.1128/JVI.00378-17

Structural Transitions of the Conserved and Metastable Hantaviral Glycoprotein Envelope
Cited by: 34
Author(s): Ilona Rissanen, Robert Stass, Antra Zeltina, Sai Li, Jussi Hepojoki, K. Harlos, Robert J.C. Gilbert, Juha T. Huiskonen, Thomas A. Bowden
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-31997-z

X-ray structure of full-length human RuvB-Like 2 – mechanistic insights into coupling between ATP binding and mechanical action
Cited by: 15
Author(s): Sara T.N. Silva, José A. Brito, Rocío Arranz, Carlos Óscar S. Sorzano, Christine Ebel, James Doutch, Mark D. Tully, José Marı́a Carazo, José L. Carrascosa, Pedro M. Matías, Tiago M. Bandeiras
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.35828

Functional and structural characterization of an ECF-type ABC transporter for vitamin B12
Cited by: 33
Author(s): Joana A Santos, S. Rempel, S. Mous, Cristiane Tambascia Pereira, Josy ter Beek, Jan‐Willem de Gier, Albert Guskov, Dirk Jan Slotboom
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.59991

Structures reveal gatekeeping of the mitochondrial Ca2+ uniporter by MICU1-MICU2
Cited by: 40
Author(s): Chongyuan Wang, Agata Jacewicz, Bryce D Delgado, Rozbeh Baradaran, Stephen B. Long
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.70427

Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS
Cited by: 17
Author(s): M.J. Sheedlo, C.L. Durie, Jeong Min Chung, Louise Chang, Jacquelyn Roberts, Michele S. Swanson, D. Borden Lacy, Melanie D. Ohi
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.30189

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
Cited by: 78
Author(s): André Heuer, Emma Thomson, Christian M. Schmidt, Otto Berninghausen, Thomas Becker, Ed Hurt, Roland Beckmann
Software Mentions: 1
Published: about 7 years ago

10.1007/s10969-014-9177-y

Crystal structure of the eukaryotic translation initiation factor 2A from Schizosaccharomyces pombe
Cited by: 7
Author(s): Kazuhiro Kashiwagi, Takuhiro Ito, Shigeyuki Yokoyama
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.58675

Structural basis for histone variant H3tK27me3 recognition by PHF1 and PHF19
Cited by: 15
Author(s): Dong Cheng, Reiko Nakagawa, Kyohei Oyama, Yusuke Yamamoto, Weilian Zhang, Aiping Dong, Yanjun Li, Yuriko Yoshimura, Hiroyuki Kamiya, Jun‐ichi Nakayama, Junji Ueda, Jinrong Min
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms221910854

Characterization of the Chimeric PriB-SSBc Protein
Cited by: 7
Author(s): En‐Shyh Lin, Yen‐Hua Huang, Cheng-Yang Huang
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.06935

A high affinity RIM-binding protein/Aplip1 interaction prevents the formation of ectopic axonal active zones
Cited by: 27
Author(s): Matthias Siebert, Mathias A. Böhme, J.H. Driller, Husam Babikir, Malou M. Mampell, Ulises Rey, Niraja Ramesh, Tanja Matkovic, Nicole Holton, Suneel Reddy-Alla, Fabian Göttfert, Dirk Kamin, Christine Quentin, Susan Klinedinst, Till F. M. Andlauer, Stefan W. Hell, Catherine A. Collins, Markus C. Wahl, Bernhard Loll, Stephan J. Sigrist
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.49375

E. coli TraR allosterically regulates transcription initiation by altering RNA polymerase conformation
Cited by: 48
Author(s): James Chen, Saumya Gopalkrishnan, Courtney Chiu, Albert Y. Chen, Elizabeth A. Campbell, Richard L. Gourse, Wilma Ross, Seth A. Darst
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.43231

Molecular mechanisms of gating in the calcium-activated chloride channel bestrophin
Cited by: 33
Author(s): Abraham H. Miller, George Vaisey, Stephen B. Long
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.12627

Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein
Cited by: 68
Author(s): Max Renner, M. Bertinelli, C. Leyrat, Guido C. Paesen, Laura Freitas Saraiva de Oliveira, Juha T. Huiskonen, Jonathan M. Grimes
Software Mentions: 1
Published: almost 9 years ago

10.1107/S1600577516017343

Conformational variation of proteins at room temperature is not dominated by radiation damage
Cited by: 48
Author(s): Silvia Russi, Ana González, L.R. Kenner, D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.20391

Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms
Cited by: 139
Author(s): Daniel L. Kober, Jennifer Alexander‐Brett, Celeste M. Karch, Carlos Cruchaga, Marco Colonna, Michael J. Holtzman, Thomas Brett
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.isci.2021.102951

Structures of heat shock factor trimers bound to DNA
Cited by: 6
Author(s): Feng Niu, Feng Han, Sheng Wang, Avinash S. Punekar, Rudolf Ladenstein, Dacheng Wang, Qinghua Zhang, Jingjin Ding, Wei Liu
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.02362

Structural basis of HIV-1 Vpu-mediated BST2 antagonism via hijacking of the clathrin adaptor protein complex 1
Cited by: 92
Author(s): Xiaofei Jia, Elizabeth Weber, Andrey Tokarev, Mary K. Lewinski, Maryan Rizk, Marissa Suarez, John Guatelli, Yong Xiong
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.37172

A bacterial immunomodulatory protein with lipocalin-like domains facilitates host–bacteria mutualism in larval zebrafish
Cited by: 42
Author(s): Annah S. Rolig, Emily Goers Sweeney, Lila E Kaye, Michael D. DeSantis, Arden Perkins, Allison V. Banse, M. Kristina Hamilton, Karen Guillemin
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.15718

Bile salt receptor complex activates a pathogenic type III secretion system
Cited by: 54
Author(s): Peng Li, Giomar Rivera-Cancel, Lisa N. Kinch, Dor Salomon, Diana R. Tomchick, Nick V. Grishin, Kim Orth
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-31961-x

Structural insights into antigen recognition of an anti-β-(1,6)-β-(1,3)-D-glucan antibody
Cited by: 7
Author(s): Kwang Hoon Sung, Jörn Josewski, Stefan Dübel, Wulf Blankenfeldt, Udo Rau
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.22153

Structural basis for subtype-specific inhibition of the P2X7 receptor
Cited by: 182
Author(s): Akira Karasawa, Toshimitsu Kawate
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.20818

Structure of the active form of human origin recognition complex and its ATPase motor module
Cited by: 44
Author(s): Ante Tocilj, Kin Fan On, Zuanning Yuan, Jingchuan Sun, Elad Elkayam, Li H, Bruce Stillman, Leemor Joshua‐Tor
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31812-9

The first crystal structure of a DNA-free nuclear receptor DNA binding domain sheds light on DNA-driven allostery in the glucocorticoid receptor
Cited by: 26
Author(s): Filipp Frank, C. Denise Okafor, Eric A. Ortlund
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.60924

Uncovering the basis of protein-protein interaction specificity with a combinatorially complete library
Cited by: 34
Author(s): Thúy-Lan Võ Lite, Robert A. Grant, Isabel Nocedal, Megan L Littlehale, Monica S. Guo, Michael T. Laub
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.03206

Serum amyloid A is a retinol binding protein that transports retinol during bacterial infection
Cited by: 105
Author(s): M.G. Derebe, Clare M Zlatkov, Sureka Gattu, Kelly A. Ruhn, Shipra Vaishnava, Gretchen E. Diehl, John B. MacMillan, Noelle S. Williams, Lora V. Hooper
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.28909

Computational design of environmental sensors for the potent opioid fentanyl
Cited by: 66
Author(s): Matthew J. Bick, Per Greisen, Kevin J. Morey, Mauricio S Antunes, Lawrence A. David, Banumathi Sankaran, Luc Reymond, Kai Johnsson, June I. Medford, David Baker
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.07433

The structure of plant photosystem I super-complex at 2.8 Å resolution
Cited by: 161
Author(s): Yuval Mazor, Anna Borovikova, Nathan Nelson
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.9223

A natural small molecule, catechol, induces c-Myc degradation by directly targeting ERK2 in lung cancer
Cited by: 28
Author(s): Do Young Lim, Seung Ho Shin, Mee-Hyun Lee, Margarita Malakhova, Igor Kurinov, Qiong Wu, Jinglong Xu, Yanan Jiang, Ziming Dong, Kangdong Liu, Kun Yeong Lee, Ki Beom Bae, Bu Young Choi, Yibin Deng, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.20797

Structure and dynamics underlying elementary ligand binding events in human pacemaking channels
Cited by: 41
Author(s): Marcel P. Goldschen-Ohm, Vadim A. Klenchin, David S. White, John Cowgill, Qiang Cui, Randall H. Goldsmith, Baron Chanda
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.14540

Carcinoma-risk variant of EBNA1 deregulates Epstein-Barr Virus episomal latency
Cited by: 38
Author(s): Jayaraju Dheekollu, Kimberly A. Malecka, Andreas Wiedmer, Henri Jacques Delecluse, Alan Kwok Shing Chiang, Dario C. Altieri, Troy E. Messick, Paul M. Lieberman
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.9527

Antivascular and antitumor properties of the tubulin-binding chalcone TUB091
Cited by: 47
Author(s): María Dolores Canela, Sam Noppen, Oskía Bueno, A.E. Prota, Katja Bargsten, Gonzalo Sáez-Calvo, María Luisa Jimeno, Mohammed Benkheil, Doménico Ribatti, Sonsoles Velázquez, María‐José Camarasa, J. Fernando Díaz, Michel O. Steinmetz, Eva-Marı́a Priego, M J Pérez-Pérez, Sandra Liekens
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-31676-z

Structural Analysis of Redox-sensing Transcriptional Repressor Rex from Thermotoga maritima
Cited by: 7
Author(s): Young Woo Park, Young Yoon Jang, Hyun Kyu Joo, Jae Young Lee
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.66657

Structure-guided microbial targeting of antistaphylococcal prodrugs
Cited by: 7
Author(s): Jenna Miller, Ishaan Shah, Jayda Hatten, Yasaman Barekatain, Elizabeth A. Mueller, Ahmed Moustafa, Rachel L. Edwards, Cynthia S. Dowd, Paul J. Planet, Florian Müller, Joseph M. Jez, Audrey Odom John
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.31486

Pi-Pi contacts are an overlooked protein feature relevant to phase separation
Cited by: 517
Author(s): Robert Vernon, P. Andrew Chong, Brian Tsang, Tae Hun Kim, Alaji Bah, Patrick Farber, Hong Lin, Julie D. Forman‐Kay
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.11297

Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha
Cited by: 34
Author(s): Janine Weber, Han Bao, Christoph Hartlmüller, Zhiqin Wang, Almut Windhager, Robert Janowski, Tobias Madl, Peng Jin, Dierk Niessing
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-019-41498-2

Position 123 of halohydrin dehalogenase HheG plays an important role in stability, activity, and enantioselectivity
Cited by: 12
Author(s): Jennifer Solarczek, Thomas Klünemann, Felix Brandt, Patrick Schrepfer, Mario Wolter, Christoph R. Jacob, Wulf Blankenfeldt, Anett Schallmey
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.14158

Viral hijacking of a replicative helicase loader and its implications for helicase loading control and phage replication
Cited by: 14
Author(s): Iris V. Hood, James M. Berger
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-43577-w

Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coli
Cited by: 12
Author(s): Xiaolin Shen, Da‐Yong Zhou, Yuheng Lin, Jia Wang, Shuaihua Gao, P. Kandavelu, Hua Zhang, Ruihua Zhang, Bi-Cheng Wang, John P. Rose, Qipeng Yuan, Yajun Yan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43932-x

Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein
Cited by: 18
Author(s): Mariano Genera, Diana Samson, Bertrand Raynal, Ahmed Haouz, Bruno Baron, Catherine Simenel, Raphaël Guérois, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44108-3

FABP1 controls hepatic transport and biotransformation of Δ9-THC
Cited by: 15
Author(s): Matthew W. Elmes, Lauren E. Prentis, L.L. McGoldrick, Christopher J. Giuliano, Joseph Sweeney, Olivia M. Joseph, Joyce Che, Gregory Carbonetti, Keith M. Studholme, Dale G. Deutsch, Robert C. Rizzo, Steven E. Glynn, Martin Kaczocha
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.26111

A widespread family of serine/threonine protein phosphatases shares a common regulatory switch with proteasomal proteases
Cited by: 23
Author(s): Niels Bradshaw, V.M. Levdikov, Christina M. Zimanyi, Rachelle Gaudet, Anthony J. Wilkinson, Richard Losick
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-44943-4

Recombinant production, purification, crystallization, and structure analysis of human transforming growth factor β2 in a new conformation
Cited by: 7
Author(s): Laura del Amo-Maestro, Laura Marino‐Puertas, Theodoros Goulas, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.14780

The conformational changes of Zika virus methyltransferase upon converting SAM to SAH
Cited by: 23
Author(s): Hailiang Zhou, Fenghua Wang, Haofeng Wang, Cheng Chen, Tianqing Zhang, Xu Han, Deping Wang, Chen Chen, Chunlei Wu, Wei Xie, Zefang Wang, Lei Zhang, Lanfeng Wang, Haitao Yang
Software Mentions: 1
Published: almost 8 years ago

10.1107/S1600577520008735

Current status and future opportunities for serial crystallography at MAX IV Laboratory
Cited by: 3
Author(s): Anastasya Shilova, Hugo Lebrette, Oskar Aurelius, Nan Jiang, M. Welin, Rebeka Kovačič, Swagatha Ghosh, Cecilia Safari, Ross J. Friel, Mirko Milas, Zdeněk Matěj, Martin Högbom, Gisela Brändén, Marco Kloos, Robert L. Shoeman, Bruce Doak, Thomas Ursby, Maria Håkansson, D.T. Logan, U. Muêller
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-48019-1

Exit tunnel modulation as resistance mechanism of S. aureus erythromycin resistant mutant
Cited by: 31
Author(s): Y. Halfon, Donna Matzov, Zohar Eyal, Anat Bashan, Ella Zimmerman, Jette Sejer Kjeldgaard, Hanne Ingmer, Ada Yonath
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48850-6

The complex structure of bile salt hydrolase from Lactobacillus salivarius reveals the structural basis of substrate specificity
Cited by: 13
Author(s): Fanxing Xu, Xiaojian Hu, Warispreet Singh, Wenjing Geng, Irina G. Tikhonova, Jun Lin
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-50249-2

Structural insight into glucose repression of the mannitol operon
Cited by: 9
Author(s): Mangyu Choe, Huitae Min, Young Ha Park, Yeon Ran Kim, Jae Sung Woo, Yeong‐Jae Seok
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.23223

The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping
Cited by: 7
Author(s): Chatrin Chatrin, Sandeep K. Talapatra, Bruno Canard, Frank Kozielski
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.01048-18

Structure-Based Classification Defines the Discrete Conformational Classes Adopted by the Arenaviral GP1
Cited by: 12
Author(s): Rhys Pryce, Weng M Ng, Antra Zeltina, Yasunori Watanabe, Kamel El Omari, Armin Wagner, Thomas A. Bowden
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-51006-1

Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7
Cited by: 24
Author(s): Takafumi Itoh, Emi Nakagawa, Moe Yoda, Akari Nakaichi, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-41354-3

Structural determinants of inhibition of Porphyromonas gingivalis gingipain K by KYT-36, a potent, selective, and bioavailable peptidase inhibitor
Cited by: 14
Author(s): Tibisay Guevara, Arturo Rodríguez-Banqueri, Anna M. Łasica, Mirosław Książek, Barbara Potempa, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-52703-7

Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase η
Cited by: 5
Author(s): Olga Rechkoblit, Robert E. Johnson, Angeliki Buku, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-40879-x

Crystal structure and epitope analysis of house dust mite allergen Der f 21
Cited by: 13
Author(s): Sze Lei Pang, Ken Ho, Jitka Waterman, Robert P. Rambo, Aik-Hong Teh, Indran Mathavan, Gemma Harris, Konstantinos Beis, Yee‐How Say, Matta Sri Anusha, Yang Yie Sio, Fook Tim Chew, Chyan Leong Ng
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.64690

Mitochondrial copper and phosphate transporter specificity was defined early in the evolution of eukaryotes
Cited by: 19
Author(s): Xinyu Zhu, Aren Boulet, Katherine M. Buckley, Casey B. Phillips, Micah G. Gammon, Laura E Oldfather, Stanley A. Moore, Scot C. Leary, Paul A. Cobine
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.62772

Cryo-EM structure of the calcium release-activated calcium channel Orai in an open conformation
Cited by: 33
Author(s): Xiaowei Hou, Ian R Outhwaite, Leanne Pedi, Stephen B. Long
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.63586

The allosteric modulation of complement C5 by knob domain peptides
Cited by: 17
Author(s): Alex Macpherson, Maisem Laabei, Zainab Ahdash, Melissa A. Graewert, James R. Birtley, Monika-Sarah E. D. Schulze, S.J. Crennell, Sarah Robinson, Ben Holmes, Vladas Oleinikovas, Per H. Nilsson, James Snowden, Victoria Ellis, Tom Eirik Mollnes, Charlotte Deane, Dmitri I. Svergun, Alastair D. G. Lawson, Jean M. H. van den Elsen
Software Mentions: 1
Published: almost 4 years ago

10.1107/S0909049513020815

Fundamental studies for the proton polarization technique in neutron protein crystallography
Cited by: 5
Author(s): Ichiro Tanaka, Katsuhiro Kusaka, Toshiyuki Chatake, Nobuo Nakabayashi
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.68578

Structural insights into the activation of human calcium-sensing receptor
Cited by: 16
Author(s): Xiaochen Chen, Lu Wang, Qianqian Cui, Zhanyu Ding, Han Liang, Yongjun Kou, Wenqing Zhang, Haonan Wang, Xiaomin Jia, Mingzhi Dai, Zhenzhong Shi, Yuying Li, Xiyang Li, Yong Geng
Software Mentions: 1
Published: about 3 years ago

10.1098/rsob.120120

Mechanistic and structural basis for inhibition of thymidylate synthase ThyX
Cited by: 36
Author(s): Tamara Basta, Yap Boum, Julien Briffotaux, Hubert F. Becker, Isabelle Lamarre-Jouenne, Jean‐Christophe Lambry, Stéphane Skouloubris, Ursula Liebl, Marc Graille, Herman van Tilbeurgh, Hannu Myllykallio
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-018-31098-x

Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus
Cited by: 11
Author(s): Erik R. Nöldeke, Lena M. Muckenfuss, Volker Niemann, Anna Müller, Elena Störk, Georg Zocher, Tanja Schneider, Thilo Stehle
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-57675-7

Viscosity-adjustable grease matrices for serial nanocrystallography
Cited by: 11
Author(s): Michihiro Sugahara, K. Motomura, Mamoru Suzuki, Tetsuya Masuda, Yasumasa Joti, Keiji Numata, Kensuke Tono, Makina Yabashi, Tetsuya Ishikawa
Software Mentions: 1
Published: almost 5 years ago

10.1098/rsob.130172

Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1
Cited by: 17
Author(s): Barbara Franke, Alexander Gasch, Daniel Salazar Rodríguez, Mohamed Chami, Muzamil Majid Khan, Rüdiger Rudolf, Jaclyn Bibby, Akira Hanashima, Julius Bogomolovas, Eleonore von Castelmur, Daniel J. Rigden, Isabel Usón, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-59446-w

What does fluorine do to a protein? Thermodynamic, and highly-resolved structural insights into fluorine-labelled variants of the cold shock protein
Cited by: 27
Author(s): Hannah Welte, Tiankun Zhou, Xenia Mihajlenko, Olga Mayans, Michael Kovermann
Software Mentions: 1
Published: almost 5 years ago

10.1098/rsob.140041

Titin kinase is an inactive pseudokinase scaffold that supports MuRF1 recruitment to the sarcomeric M-line
Cited by: 52
Author(s): Julius Bogomolovas, Alexander Gasch, Felix Šimkovic, Daniel J. Rigden, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 10 years ago

10.1128/JVI.00923-19

The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation
Cited by: 53
Author(s): Daniel Wrapp, Jason S. McLellan
Software Mentions: 1
Published: almost 5 years ago

10.1128/JVI.02005-19

Structure and Characterization of Crimean-Congo Hemorrhagic Fever Virus GP38
Cited by: 18
Author(s): Akaash K. Mishra, Crystal L. Moyer, Dafna M. Abelson, Daniel J. Deer, Kamel El Omari, Ramona Duman, Leslie Lobel, Julius J. Lutwama, John M. Dye, Armin Wagner, Kartik Chandran, Robert W. Cross, Thomas W. Geisbert, Larry Zeitlin, Zachary A. Bornholdt, Jason S. McLellan
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64527-x

Structural Basis for PPARα Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives
Cited by: 4
Author(s): Takuya Yoshida, Hiroya Oki, Masamitsu Doi, Syohei Fukuda, Tomohiro Yuzuriha, Ryotaro Tabata, Kenji Ishimoto, Kazuki Kawahara, Tadayasu Ohkubo, Hiroyuki Miyachi, Takefumi Doi, Keisuke Tachibana
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64792-w

The pivot point arginines identified in the β-pinwheel structure of C-terminal domain from Salmonella Typhi DNA Gyrase A subunit
Cited by: 1
Author(s): Ekta Sachdeva, Gurpreet Kaur, Pragya Tiwari, Deepali Gupta, T.P. Singh, A.S. Ethayathulla, Punit Kaur
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65123-9

Aspartate/asparagine-β-hydroxylase: a high-throughput mass spectrometric assay for discovery of small molecule inhibitors
Cited by: 14
Author(s): Lennart Brewitz, Anthony Tumber, Inga Pfeffer, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66050-5

A disulfide constrains the ToxR periplasmic domain structure, altering its interactions with ToxS and bile-salts
Cited by: 8
Author(s): Charles R. Midgett, Rachel A. Swindell, Maria Pellegrini, F. Jon Kull
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.61189

Functional implications of MIR domains in protein O-mannosylation
Cited by: 2
Author(s): Antonella Chiapparino, Antonija Grbavac, Hendrik R. A. Jonker, Yvonne Hackmann, Sofia Mortensen, Ewa Zatorska, Andrea Schott, Günter Stier, Krishna Saxena, Klemens Wild, Harald Schwalbe, Sabine Strahl, Irmgard Sinning
Software Mentions: 1
Published: almost 4 years ago

10.1107/S0909049513021845

Evaluation of performance for IBARAKI biological crystal diffractometer iBIX with new detectors
Cited by: 41
Author(s): Katsuhiro Kusaka, Takamitsu Hosoya, Taro Yamada, Katsuaki Tomoyori, Takashi Ohhara, Masaki Katagiri, Kazuo Kurihara, Ichiro Tanaka, Nobuo Nakabayashi
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-020-67069-4

Structural and enzymatic characterisation of the Type III effector NopAA (=GunA) from Sinorhizobium fredii USDA257 reveals a Xyloglucan hydrolase activity
Cited by: 4
Author(s): Jonathan Dorival, Sonia Philys, Elisa Giuntini, Romain Brailly, Jérôme de Ruyck, Mirjam Czjzek, Emanuele G. Biondi, Coralie Bompard
Software Mentions: 1
Published: over 4 years ago

10.1107/S1600577515004002

Characterization and use of the spent beam for serial operation of LCLS
Cited by: 17
Author(s): Sébastien Boutet, L. Foucar, Thomas R. M. Barends, Sabine Botha, R. Bruce Doak, Jason E. Koglin, Marc Messerschmidt, Karol Nass, Ilme Schlichting, M. Seibert, Robert L. Shoeman, Garth J. Williams
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-40937-4

An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B Cells
Cited by: 12
Author(s): Cheng-Chung Lee, Chih-Ya Yang, Long-Yau Lin, Tzu‐Ping Ko, Alarng Hsun-Lang Chang, Stanley Shi-Chung Chang, Andrew H.‐J. Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-68502-4

Structural basis of SALM3 dimerization and synaptic adhesion complex formation with PTPσ
Cited by: 3
Author(s): Sudeep Karki, Alexander V. Shkumatov, Sungchul Bae, Hyeonho Kim, Jaewon Ko, Tommi Kajander
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68355-x

The discovery of a new antibody for BRIL-fused GPCR structure determination
Cited by: 19
Author(s): Hikaru Miyagi, Hidetsugu Asada, Mina Suzuki, Yuichi Takahashi, Mai Yasunaga, Chiyo Suno, So Iwata, Junichi Saito
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68612-z

Structure and mechanism of potent bifunctional β-lactam- and homoserine lactone-degrading enzymes from marine microorganisms
Cited by: 10
Author(s): Christopher Selleck, Marcelo Monteiro Pedroso, Liam A. Wilson, Stefan Krco, Esmée Gianna Knaven, Manfredi Miraula, Nataša Mitić, James A. Larrabee, Thomas Brück, Alice M. Clark, Luke W. Guddat
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.56178

Nucleosome-CHD4 chromatin remodeler structure maps human disease mutations
Cited by: 45
Author(s): Lucas Farnung, Moritz Ochmann, Patrick Cramer
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.18449

Antiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4
Cited by: 50
Author(s): John M. Nicoludis, Bennett E Vogt, Anna G. Green, Charlotta Schärfe, Debora S. Marks, Rachelle Gaudet
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.58622

The dynamic nature of the human origin recognition complex revealed through five cryoEM structures
Cited by: 19
Author(s): Matt J. Jaremko, Kin Fan On, Dennis R. Thomas, Bruce Stillman, Leemor Joshua‐Tor
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.55517

Cryo-EM structure in situ reveals a molecular switch that safeguards virus against genome loss
Cited by: 20
Author(s): Oliver W. Bayfield, Alasdair C. Steven, A.A. Antson
Software Mentions: 1
Published: over 4 years ago

10.1107/S1600577516016465

P13, the EMBL macromolecular crystallography beamline at the low-emittance PETRA III ring for high- and low-energy phasing with variable beam focusing
Cited by: 141
Author(s): Michele Cianci, Gleb Bourenkov, Guillaume Pompidor, Ivars Karpičs, Johanna Kallio, Isabel Bento, Manfred Roessle, F. Cipriani, S. Fiedler, Thomas R. Schneider
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-73452-y

The crystal structure of mycobacterial epoxide hydrolase A
Cited by: 3
Author(s): Eike C. Schulz, Sara R. Henderson, Boris Illarionov, Thomas Crosskey, Stacey M. Southall, Boris Krichel, Charlotte Uetrecht, Markus Fischer, Matthias Wilmanns
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-78148-x

Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans
Cited by: 2
Author(s): Jun Young Lee, Young Woo Park, Myung Yeon Lee, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-29500-9

Structural determinants of the catalytic mechanism of Plasmodium CCT, a key enzyme of malaria lipid biosynthesis
Cited by: 6
Author(s): Ewelina Guca, Gergely Nagy, F. Hajdu, Lívia Marton, Richárd Izrael, François Hoh, Yinshan Yang, Henri Vial, Beáta G. Vértessy, Jean-François Guichou, Rachel Cerdan
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms131114326

Molecular Mechanisms of Pharmaceutical Drug Binding into Calsequestrin
Cited by: 8
Author(s): Arun K Subra, Mark S. Nissen, K.M. Lewis, Ashwin K Muralidharan, E.J. Sanchez, Hendrik Milting, Chulho Kang
Software Mentions: 1
Published: about 12 years ago

10.3390/ijms15034523

A Preliminary X-ray Study of Murine Tnfaip8/Oxi-α
Cited by: 4
Author(s): Daeun Lee, Mi-Sun Kim, Jimin Park, Gil‐Ja Jhon, Jin H. Son, Dongkun Shin
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-79654-8

Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome
Cited by: 14
Author(s): Qianqian Wang, Vinod K. Vogirala, Aghil Soman, Nikolay V. Berezhnoy, Zhehui Barry Liu, Andrew Barnabas Wong, Nikolay Korolev, Chun‐Jen Su, Sara Sandin, Lars Nordenskiöld
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-80588-4

Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery
Cited by: 14
Author(s): Lyra Chang, James C. Campbell, Idris Raji, Shiva Krishna Reddy Guduru, Prasanna Kandel, Michelle Nguyen, Steven Liu, Kevin Tran, Navneet K Venugopal, Bethany C Taylor, Matthew V. Holt, Nicolas L. Young, Errol L. G. Samuel, Prashi Jain, Conrad Santini, Banumathi Sankaran, Kevin R. MacKenzie, Damian W. Young
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms151120736

Structures of the Inducer-Binding Domain of Pentachlorophenol-Degrading Gene Regulator PcpR from Sphingobium chlorophenolicum
Cited by: 17
Author(s): Robert P. Hayes, Timothy W. Moural, K.M. Lewis, David Onofrei, Luying Xun, ChulHee Kang
Software Mentions: 1
Published: about 10 years ago

10.1107/S0909049513020694

Crystal structure analysis, overexpression and refolding behaviour of a DING protein with single mutation
Cited by: 4
Author(s): Zuoqi Gai, Akiyoshi Nakamura, Yoshikazu Tanaka, Nagisa Hirano, Isao Tanaka, Min Yao
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-021-83438-z

Three-dimensional structure of human cyclooxygenase (hCOX)-1
Cited by: 24
Author(s): Morena Miciaccia, Benny Danilo Belviso, Mariaclara Iaselli, Gino Cingolani, Savina Ferorelli, Marianna Cappellari, Paola Loguercio Polosa, Maria Grazia Perrone, Rocco Caliandro, Antonio Scilimati
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-85559-x

Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity
Cited by: 12
Author(s): Naazneen Khan, Tatsuya Arai, Sakae Tsuda, Hidemasa Kondo
Software Mentions: 1
Published: over 3 years ago

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