cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-64527-x

Structural Basis for PPARα Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives
Cited by: 4
Author(s): Takuya Yoshida, Hiroya Oki, Masamitsu Doi, Syohei Fukuda, Tomohiro Yuzuriha, Ryotaro Tabata, Kenji Ishimoto, Kazuki Kawahara, Tadayasu Ohkubo, Hiroyuki Miyachi, Takefumi Doi, Keisuke Tachibana
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-64792-w

The pivot point arginines identified in the β-pinwheel structure of C-terminal domain from Salmonella Typhi DNA Gyrase A subunit
Cited by: 1
Author(s): Ekta Sachdeva, Gurpreet Kaur, Pragya Tiwari, Deepali Gupta, T.P. Singh, A.S. Ethayathulla, Punit Kaur
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-65123-9

Aspartate/asparagine-β-hydroxylase: a high-throughput mass spectrometric assay for discovery of small molecule inhibitors
Cited by: 14
Author(s): Lennart Brewitz, Anthony Tumber, Inga Pfeffer, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66050-5

A disulfide constrains the ToxR periplasmic domain structure, altering its interactions with ToxS and bile-salts
Cited by: 8
Author(s): Charles R. Midgett, Rachel A. Swindell, Maria Pellegrini, F. Jon Kull
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67069-4

Structural and enzymatic characterisation of the Type III effector NopAA (=GunA) from Sinorhizobium fredii USDA257 reveals a Xyloglucan hydrolase activity
Cited by: 4
Author(s): Jonathan Dorival, Sonia Philys, Elisa Giuntini, Romain Brailly, Jérôme de Ruyck, Mirjam Czjzek, Emanuele G. Biondi, Coralie Bompard
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68502-4

Structural basis of SALM3 dimerization and synaptic adhesion complex formation with PTPσ
Cited by: 3
Author(s): Sudeep Karki, Alexander V. Shkumatov, Sungchul Bae, Hyeonho Kim, Jaewon Ko, Tommi Kajander
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68355-x

The discovery of a new antibody for BRIL-fused GPCR structure determination
Cited by: 19
Author(s): Hikaru Miyagi, Hidetsugu Asada, Mina Suzuki, Yuichi Takahashi, Mai Yasunaga, Chiyo Suno, So Iwata, Junichi Saito
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68612-z

Structure and mechanism of potent bifunctional β-lactam- and homoserine lactone-degrading enzymes from marine microorganisms
Cited by: 10
Author(s): Christopher Selleck, Marcelo Monteiro Pedroso, Liam A. Wilson, Stefan Krco, Esmée Gianna Knaven, Manfredi Miraula, Nataša Mitić, James A. Larrabee, Thomas Brück, Alice M. Clark, Luke W. Guddat
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73452-y

The crystal structure of mycobacterial epoxide hydrolase A
Cited by: 3
Author(s): Eike C. Schulz, Sara R. Henderson, Boris Illarionov, Thomas Crosskey, Stacey M. Southall, Boris Krichel, Charlotte Uetrecht, Markus Fischer, Matthias Wilmanns
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78148-x

Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans
Cited by: 2
Author(s): Jun Young Lee, Young Woo Park, Myung Yeon Lee, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79654-8

Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome
Cited by: 14
Author(s): Qianqian Wang, Vinod K. Vogirala, Aghil Soman, Nikolay V. Berezhnoy, Zhehui Barry Liu, Andrew Barnabas Wong, Nikolay Korolev, Chun‐Jen Su, Sara Sandin, Lars Nordenskiöld
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80588-4

Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery
Cited by: 14
Author(s): Lyra Chang, James C. Campbell, Idris Raji, Shiva Krishna Reddy Guduru, Prasanna Kandel, Michelle Nguyen, Steven Liu, Kevin Tran, Navneet K Venugopal, Bethany C Taylor, Matthew V. Holt, Nicolas L. Young, Errol L. G. Samuel, Prashi Jain, Conrad Santini, Banumathi Sankaran, Kevin R. MacKenzie, Damian W. Young
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83438-z

Three-dimensional structure of human cyclooxygenase (hCOX)-1
Cited by: 24
Author(s): Morena Miciaccia, Benny Danilo Belviso, Mariaclara Iaselli, Gino Cingolani, Savina Ferorelli, Marianna Cappellari, Paola Loguercio Polosa, Maria Grazia Perrone, Rocco Caliandro, Antonio Scilimati
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85559-x

Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity
Cited by: 12
Author(s): Naazneen Khan, Tatsuya Arai, Sakae Tsuda, Hidemasa Kondo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89785-1

A PROSS-designed extensively mutated estrogen receptor α variant displays enhanced thermal stability while retaining native allosteric regulation and structure
Cited by: 12
Author(s): Mark Kriegel, Hanna J. Wiederanders, Sewar Alkhashrom, Jutta Eichler, Yves A. Muller
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91596-3

Anthrax toxin translocation complex reveals insight into the lethal factor unfolding and refolding mechanism
Cited by: 5
Author(s): Alexandra J. Machen, Mark T. Fisher, Bret Freudenthal
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-92554-9

Stereoselective synthesis of a 4-⍺-glucoside of valienamine and its X-ray structure in complex with Streptomyces coelicolor GlgE1-V279S
Cited by: 2
Author(s): Anshupriya Si, Thilina D. Jayasinghe, Radhika Thanvi, Sunayana Kapil, Donald R. Ronning, Steven J. Sucheck
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-95123-2

Structure of the master regulator Rns reveals an inhibitor of enterotoxigenic Escherichia coli virulence regulons
Cited by: 9
Author(s): Charles R. Midgett, Kacey Marie Talbot, Jessica L. Day, George P. Munson, F. Jon Kull
Software Mentions: 1
Published: about 5 years ago

10.1038/s41392-021-00712-2

Structural and functional basis for pan-CoV fusion inhibitors against SARS-CoV-2 and its variants with preclinical evaluation
Cited by: 33
Author(s): Shuai Xia, Qiaoshuai Lan, Yun Zhu, Chao Wang, Wei Xu, Yutang Li, Lijue Wang, Fanke Jiao, Jie Zhou, Hua Chen, Qian Wang, Xiujun Cai, Yang Wu, Jie Gao, Huan Liu, Ge Sun, Jan Münch, Frank Kirchhoff, Zhenghong Yuan, Youhua Xie, Fei Sun, Shibo Jiang, Lu Lu
Software Mentions: 1
Published: about 5 years ago

10.1186/1751-0473-7-5

Automatic Fortran to C++ conversion with FABLE
Cited by: 13
Author(s): Ralf W. Grosse‐Kunstleve, Thomas C. Terwilliger, Nicholas K. Sauter, Paul D. Adams
Software Mentions: 1
Published: about 14 years ago

10.1063/1.4984052

Structural and dynamic insights into the role of conformational switching in the nuclease activity of the Xanthomonas albilineans Cas2 in CRISPR-mediated adaptive immunity
Cited by: 8
Author(s): Donghyun Ka, Sung Kyu Hong, Ugeene Jeong, Migyeong Jeong, Nayoung Suh, Jeong‐Yong Suh, Euiyoung Bae
Software Mentions: 1
Published: about 9 years ago

10.1063/1.5092803

Structural and dynamical description of the enzymatic reaction of a phosphohexomutase
Cited by: 7
Author(s): Kyle M. Stiers, Abigail C. Graham, Jian‐She Zhu, David L. Jakeman, Jay C. Nix, Lesa J. Beamer
Software Mentions: 1
Published: over 7 years ago

10.1063/1.5120527

High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures
Cited by: 16
Author(s): Juan Sanchez, Melissa Carrillo, Suraj Pandey, Moraima Noda, Luis Aldama, Denisse Feliz, Elin Claesson, Weixiao Yuan Wahlgren, Gregory Tracy, Phu Duong, Angela C. Nugent, Andrew Field, V. Šrajer, Christopher Kupitz, So Iwata, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Luo Fangjia, Kensuke Tono, Shigeki Owada, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojković
Software Mentions: 1
Published: almost 7 years ago

10.1063/1.5130582

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin
Cited by: 3
Author(s): Ming Dong, Mackenzie L. Lauro, Timothy J. Koblish, Brian J. Bahnson
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2012.08.011

The CDK9 Tail Determines the Reaction Pathway of Positive Transcription Elongation Factor b
Cited by: 31
Author(s): Sonja Baumli, A.J. Hole, Lan-Zhen Wang, M.E.M. Noble, Jane Endicott
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.str.2008.08.007

Structural Analysis of the Interactions Between Paxillin LD Motifs and α-Parvin
Cited by: 35
Author(s): Sonja Lorenz, Ioannis Vakonakis, E.D. Lowe, Iain D. Campbell, M.E.M. Noble, M.K. Hoellerer
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.str.2008.05.006

Structural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46
Cited by: 193
Author(s): Natalia V. Murzina, X.Y. Pei, Wei Zhang, Mike Sparkes, Jose Vicente-Garcia, J. Venkatesh Pratap, Stephen H. McLaughlin, Tom Rolef Ben-Shahar, Alain Verreault, Ben F. Luisi, Ernest D. Laue
Software Mentions: 1
Published: about 18 years ago

10.1016/j.str.2014.11.020

Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
Cited by: 19
Author(s): G. Bunkóczi, Björn Wallner, Randy J. Read
Software Mentions: 1
Published: over 11 years ago

10.1016/j.str.2011.11.001

Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824
Cited by: 77
Author(s): Susan E. Cellitti, Jennifer Shaffer, David H. Jones, Tathagata Mukherjee, Meera Gurumurthy, Badry Bursulaya, Helena I. Boshoff, Inhee Choi, Amit Nayyar, Yong Sok Lee, Joseph Cherian, Pornwaratt Niyomrattanakit, Thomas Dick, Ujjini H. Manjunatha, Clifton E. Barry, Glen Spraggon, Bernhard H. Geierstanger
Software Mentions: 1
Published: over 14 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 11 years ago

10.1016/j.str.2015.05.002

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2
Cited by: 20
Author(s): Lyudmila Dimitrova, Eugene Valkov, Shintaro Aibara, Dirk Flemming, Stephen H. McLaughlin, Ed Hurt, Murray Stewart
Software Mentions: 1
Published: about 11 years ago

10.1016/j.str.2015.12.015

Family-wide Structural Analysis of Human Numb-Associated Protein Kinases
Cited by: 113
Author(s): F.J. Sorrell, M. Szklarz, K.R. Abdul Azeez, J.M. Elkins, Stefan Knapp
Software Mentions: 1
Published: over 10 years ago

10.1016/j.str.2018.03.014

Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1
Cited by: 30
Author(s): Deg Briggs, Erhard Hohenester
Software Mentions: 1
Published: about 8 years ago

10.1016/j.str.2018.07.011

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3
Cited by: 43
Author(s): J.J.B. Cockburn, Sophie J. Hesketh, Peter O. Mulhair, Maren Thomsen, Mary J. O’Connell, Michael Way
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.str.2019.06.008

Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation
Cited by: 4
Author(s): Mads Gabrielsen, Lori Buetow, Dominika Kowalczyk, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.str.2019.09.010

Combining Transient Expression and Cryo-EM to Obtain High-Resolution Structures of Luteovirid Particles
Cited by: 22
Author(s): Matthew J. Byrne, John F. C. Steele, Emma L. Hesketh, Miriam Walden, Rebecca Thompson, George P. Lomonossoff, Neil A. Ranson
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
Cited by: 51
Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-018-0258-8

Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression
Cited by: 11
Author(s): Hang Zhou, Zhongshan Cheng, Nick Bass, John H. Krystal, Lindsay A. Farrer, Henry R. Kranzler, Joel Gelernter
Software Mentions: 1
Published: almost 8 years ago

10.1101/2020.06.08.141267

Structural basis of a public antibody response to SARS-CoV-2
Cited by: 18
Author(s): Meng Yuan, Hejun Liu, Nicholas C. Wu, Chang-Chun David Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry J Tien, Thomas F. Rogers, Elise Landais, Devin Sok, Joseph G. Jardine, Dennis R. Burton, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2021.01.26.428356

Sequence signatures of two IGHV3-53/3-66 public clonotypes to SARS-CoV-2 receptor binding domain
Cited by: 3
Author(s): Timothy J.C. Tan, Meng Yuan, Kaylee Kuzelka, Gilberto C Padron, Jacob R. Beal, Xin Chen, Yiquan Wang, Joel Rivera-Cardona, Xueyong Zhu, Beth M. Stadtmueller, Christopher B. Brooke, Ian A. Wilson, Nicholas C. Wu
Software Mentions: 1
Published: over 5 years ago

10.1101/2020.09.18.302901

SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism
Cited by: 34
Author(s): Ming Shi, Long Wang, Pietro Fontana, Setu M. Vora, Ying Zhang, Tian‐Min Fu, Judy Lieberman, Hao Wu
Software Mentions: 1
Published: almost 6 years ago

10.1101/2020.09.21.305441

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 4
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: almost 6 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00492-16

Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function
Cited by: 30
Author(s): Nam K. Tonthat, Praveen R. Juvvadi, Hengshan Zhang, Soo Chan Lee, Ronald A. Venters, Leonard D. Spicer, William J. Steinbach, Joseph Heitman, Maria A. Schumacher
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.00872-16

Molecular Insights into the Fungus-Specific Serine/Threonine Protein Phosphatase Z1 in Candida albicans
Cited by: 21
Author(s): Emily Chen, M.S. Choy, Katalin Petrényi, Zoltán Kónya, Ferenc Erdődi, Viktor Dombrádi, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.01543-16

Emergence of a Potent Multidrug Efflux Pump Variant That Enhances Campylobacter Resistance to Multiple Antibiotics
Cited by: 81
Author(s): Hong Yao, Zhangqi Shen, Yang Wang, Fengru Deng, Dejun Liu, Gaowa Naren, Lei Dai, Chih‐Chia Su, Bing Wang, Shaolin Wang, Congming Wu, Edward Yu, Qijing Zhang, Jianzhong Shen
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
Cited by: 21
Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
Cited by: 17
Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
Cited by: 38
Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
Cited by: 19
Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
Cited by: 26
Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.01497-19

Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO 2 Capture by a Surface-Exposed [Fe 4 S 4 ] Cluster
Cited by: 10
Author(s): Lee A. Rettberg, Wonchull Kang, Martin T. Stiebritz, Caleb J. Hiller, Chi Chung Lee, Jasper Liedtke, Markus W. Ribbe, Yilin Hu
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00280-20

The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site
Cited by: 34
Author(s): Jérémie Prévost, W.D. Tolbert, Halima Medjahed, Rebekah Sherburn, Navid Madani, Daria Zoubchenok, Gabrielle Gendron‐Lepage, Althea Gaffney, Melissa C. Grenier, Sharon Kirk, Natasha Gupta Vergara, Changze Han, Brendan T. Mann, Agnès Laurence Chenine, Adel Ahmed Rashad Ahmed, Irwin M. Chaiken, Frank Kirchhoff, Beatrice H. Hahn, Hillel Haim, Cameron F. Abrams, Amos B. Smith, Joseph Sodroski, Marzena Pazgier, Andrés Finzi
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01303-20

Structure and Multitasking of the c-di-GMP-Sensing Cellulose Secretion Regulator BcsE
Cited by: 12
Author(s): Samira Zouhir, W. Abidi, M. Caleechurn, Petya V. Krasteva
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01488-20

Structural Characterization of the Essential Cell Division Protein FtsE and Its Interaction with FtsX in Streptococcus pneumoniae
Cited by: 10
Author(s): Martín Alcorlo, Daniel Straume, Joe Lutkenhaus, Leiv Sigve Håvarstein, J.A. Hermoso
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02012-20

Molecular Deceleration Regulates Toxicant Release to Prevent Cell Damage in Pseudomonas putida S16 (DSM 28022)
Cited by: 4
Author(s): Hongzhi Tang, Kunzhi Zhang, Haiyang Hu, Geng Wu, Weiwei Wang, Xiongyu Zhu, Gongquan Liu, Ping Xu
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02772-20

Structure of the Receptor Binding Domain of EnvP(b)1, an Endogenous Retroviral Envelope Protein Expressed in Human Tissues
Cited by: 5
Author(s): K. McCarthy, Joseph L. Timpona, Simon Jenni, Louis-Marie Bloyet, Vesna Brusic, Welkin E. Johnson, Sean P. J. Whelan, Lindsey R. Robinson-McCarthy
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02924-20

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2
Cited by: 4
Author(s): Alexander Stevens, Katherine A. Muratore, Yanxiang Cui, Patricia J. Johnson, Zhou Zh
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03199-20

Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring
Cited by: 19
Author(s): Norihiro Takekawa, Akihiro Kawamoto, Mayuko Sakuma, Takayuki Kato, Seiji Kojima, Miki Kinoshita, Tetsuo Minamino, Keiichi Namba, Michio Homma, Katsumi Imada
Software Mentions: 1
Published: over 5 years ago

10.1093/hmg/ddv007

Crystal structure of human persulfide dioxygenase: structural basis of ethylmalonic encephalopathy
Cited by: 44
Author(s): Ilaria Pettinati, Jürgen Brem, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: over 11 years ago

10.1107/S2052252517002433

Crystallographic and SAXS studies ofS-adenosyl-<scp>L</scp>-homocysteine hydrolase fromBradyrhizobium elkanii
Cited by: 10
Author(s): Tomasz Manszewski, Kamil Szpotkowski, Mariusz Jaskólski
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252516010514

Neutron structure of human carbonic anhydrase II in complex with methazolamide: mapping the solvent and hydrogen-bonding patterns of an effective clinical drug
Cited by: 25
Author(s): Mayank Aggarwal, Andrey Kovalevsky, Hector A. Velazquez, S.Z. Fisher, Jeremy C. Smith, Robert McKenna
Software Mentions: 1
Published: about 10 years ago

10.1107/S205225251701750X

Crystal structure of peroxiredoxin 3 from Vibrio vulnificus and its implications for scavenging peroxides and nitric oxide
Cited by: 6
Author(s): Jinsook Ahn, Kyung Ku Jang, Inseong Jo, Nurhasni Hasan, Jong Gyu Lim, Jin‐Wook Yoo, Sang Ho Choi, Nam‐Chul Ha
Software Mentions: 1
Published: over 8 years ago

10.1107/S2052252516016304

A multicrystal diffraction data-collection approach for studying structural dynamics with millisecond temporal resolution
Cited by: 17
Author(s): Robin Schubert, Svetlana Kapis, Yannig Gicquel, Gleb Bourenkov, Thomas R. Schneider, Michaël Heymann, Christian Betzel, Markus Perbandt
Software Mentions: 1
Published: almost 10 years ago

10.1107/S2052252515008337

Native SAD is maturing
Cited by: 48
Author(s): John P. Rose, Bi-Cheng Wang, M.S. Weiss
Software Mentions: 1
Published: over 11 years ago

10.1107/S2052252519001878

Ice formation and solvent nanoconfinement in protein crystals
Cited by: 9
Author(s): David Moreau, Hakan Atakişi, Robert Thorne
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252520006065

Assessing the JEOL CRYO ARM 300 for high-throughput automated single-particle cryo-EM in a multiuser environment
Cited by: 12
Author(s): Marcus Fislage, Alexander V. Shkumatov, Annelore Stroobants, Rouslan G. Efremov
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252514012585

Structure and function study of the complex that synthesizesS-adenosylmethionine
Cited by: 35
Author(s): Ben Murray, S.V. Antonyuk, A. Marina, Sebastiaan van Liempd, Shelly C. Lu, José M. Mato, S.S. Hasnain, Adriana L. Rojas
Software Mentions: 1
Published: about 12 years ago

10.1107/S2052252520004030

Atomic structures determined from digitally defined nanocrystalline regions
Cited by: 8
Author(s): Marcus Gallagher-Jones, Karen C. Bustillo, Colin Ophus, Logan S. Richards, Jim Ciston, Sang-Ho Lee, Andrew M. Minor, José A. Rodríguez
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252519001453

Fixed-target serial oscillation crystallography at room temperature
Cited by: 24
Author(s): Jennifer L. Wierman, Olivier Paré-Labrosse, Antoine Sarracini, Jessica E. Besaw, Michael J. Cook, Saeed Oghbaey, Hazem Daoud, P. Mehrabi, I.A. Kriksunov, Anling Kuo, David Schüller, Scott Smith, Oliver P. Ernst, Doletha M. E. Szebenyi, Sol M. Grüner, R. J. D. Miller, Aaron D. Finke
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252514021113

Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein
Cited by: 26
Author(s): Melina Haupt, Matthew P. Blakeley, S.J. Fisher, Sax A. Mason, J.B. Cooper, Edward P. Mitchell, V. Trevor Forsyth
Software Mentions: 1
Published: almost 12 years ago

10.1107/S2052252520006855

1.8 Å resolution structure of β-galactosidase with a 200 kV CRYO ARM electron microscope
Cited by: 25
Author(s): Alan Merk, Takuma Fukumura, Xing Zhu, Joseph E. Darling, Reinhard Grisshammer, Jana Ognjenović, Sriram Subramaniam
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252520010374

Anaerobic fixed-target serial crystallography
Cited by: 10
Author(s): Patrick Rabe, John Beale, A. Butryn, Pierre Aller, A.S. Dirr, Pauline A. Lang, Danny Axford, S.B. Carr, T.M. Leissing, M.A. McDonough, Bradley Davy, Ali Ebrahim, Julien Orlans, Selina L. S. Storm, Allen M. Orville, Christopher J. Schofield, R.L. Owen
Software Mentions: 1
Published: almost 6 years ago

10.1107/S2052252519011655

High-throughput structures of protein–ligand complexes at room temperature using serial femtosecond crystallography
Cited by: 33
Author(s): T. Moreno-Chicano, Ali Ebrahim, Danny Axford, M.V. Appleby, John Beale, Amanda K. Chaplin, Duyvesteyn Hme., Reza A. Ghiladi, Shigeki Owada, D.A. Sherrell, R.W. Strange, Hiroshi Sugimoto, Kensuke Tono, J.A.R. Worrall, Robin L. Owen, Hough
Software Mentions: 1
Published: almost 7 years ago

10.1107/S2052252519008285

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography
Cited by: 24
Author(s): T.P. Halsted, Keitaro Yamashita, Chai Gopalasingam, Rajesh T. Shenoy, Kunio Hirata, Hideo Ago, Go Ueno, Matthew P. Blakeley, Robert R. Eady, S.V. Antonyuk, Masaki Yamamoto, S.S. Hasnain
Software Mentions: 1
Published: about 7 years ago

10.1107/S205225251601664X

Fifteen years of the Protein Crystallography Station: the coming of age of macromolecular neutron crystallography
Cited by: 24
Author(s): Julian C.-H. Chen, Clifford J. Ünkefer
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252519014507

Recent trends in crystallography – a current IUCr journals perspective
Cited by: 0
Author(s): Andrew J. Allen
Software Mentions: 1
Published: almost 7 years ago

10.1107/S2052252514004096

Structural insight into activity enhancement and inhibition of H64A carbonic anhydrase II by imidazoles
Cited by: 30
Author(s): Mayank Aggarwal, Bhargav Kondeti, Chingkuang Tu, C. Mark Maupin, David N. Silverman, Robert McKenna
Software Mentions: 1
Published: over 12 years ago

10.1107/S2052252516014147

Lytic polysaccharide monooxygenases: a crystallographer's view on a new class of biomass-degrading enzymes
Cited by: 77
Author(s): Kristian E. H. Frandsen, Leila Lo Leggio
Software Mentions: 1
Published: almost 10 years ago

10.1107/S205225251900914X

1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector
Cited by: 28
Author(s): A. Tolstikova, Matteo Levantino, Oleksandr Yefanov, V. Hennicke, P. Fischer, Jan Meyer, A. Mozzanica, S. Redford, Eva Crosas, Nadia Opara, Miriam Barthelmeß, J. Lieske, D. Oberthüer, E. Wator, István Mohácsi, Michaël Wulff, B. Schmitt, Henry N. Chapman, A. Meents
Software Mentions: 1
Published: almost 7 years ago

10.1107/S2052252518007637

Chlamydia protein Pgp3 studied at high resolution in a new crystal form
Cited by: 3
Author(s): Sarfraz Khurshid, Lata Govada, Gillian Wills, Myra O. McClure, John R. Helliwell, Naomi E. Chayen
Software Mentions: 1
Published: about 8 years ago

10.1107/S2052252519005955

Conservation of the structure and function of bacterial tryptophan synthases
Cited by: 10
Author(s): K. Michalska, Jennifer Gale, G. Joachimiak, Changsoo Chang, C. Hatzos-Skintges, B. Nocek, Stephen Johnston, L. Bigelow, Besnik Bajrami, R. Jedrzejczak, Samantha Wellington, Deborah T. Hung, Partha P. Nag, Stewart L. Fisher, M. Endres, Andrzej Joachimiak
Software Mentions: 1
Published: about 7 years ago

10.1107/S2052252518005237

Ionic scattering factors of atoms that compose biological molecules
Cited by: 28
Author(s): Koji Yonekura, Ryota Matsuoka, Yoshiki Yamashita, Tsutomu Yamane, Mitsunori Ikeguchi, Akinori Kidera, Saori Maki-Yonekura
Software Mentions: 1
Published: over 8 years ago

10.1107/S205225251302695X

Structural insights into WcbI, a novel polysaccharide-biosynthesis enzyme
Cited by: 6
Author(s): Mirella Vivoli, E. Ayres, Edward Beaumont, Michail N. Isupov, Nicholas J. Harmer
Software Mentions: 1
Published: almost 13 years ago

10.1107/S2052252518001124

Intermolecular correlations are necessary to explain diffuse scattering from protein crystals
Cited by: 22
Author(s): Ariana Peck, Frédéric Poitevin, Thomas J Lane
Software Mentions: 1
Published: over 8 years ago

10.1107/S2052252516016675

Mutation of Tyr137 of the universalEscherichia colifimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding
Cited by: 18
Author(s): Said Rabbani, Eva‐Maria Krammer, Goedele Roos, Adam Zalewski, Roland R. Preston, Sameh Eid, Pascal Zihlmann, Martine Prévost, Marc F. Lensink, Andrew Thompson, Beat Ernst, Julie Bouckaert
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252519006651

Formation of a highly dense tetra-rhenium cluster in a protein crystal and its implications in medical imaging
Cited by: 11
Author(s): Alice Brink, John R. Helliwell
Software Mentions: 1
Published: about 7 years ago

10.1107/S2052252519003956

Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins
Cited by: 63
Author(s): Ali Ebrahim, T. Moreno-Chicano, M.V. Appleby, Amanda K. Chaplin, John Beale, D.A. Sherrell, Duyvesteyn Hme., Shigeki Owada, Kensuke Tono, Hiroshi Sugimoto, R.W. Strange, J.A.R. Worrall, Danny Axford, R.L. Owen, Hough
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252515024161

High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP–oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution
Cited by: 30
Author(s): Eduardo Howard, B. Guillot, Matthew P. Blakeley, Michael Haertlein, Martine Moulin, A. Mitschler, A. Cousido-Siah, Firas Fadel, Wanda M. Valsecchi, Takashi Tanaka, T. Petrova, Julien Claudot, A. Podjarny
Software Mentions: 1
Published: over 10 years ago

10.1107/S2052252519011692

DeepRes: a new deep-learning- and aspect-based local resolution method for electron-microscopy maps
Cited by: 43
Author(s): Erney Ramírez-Aportela, Javier Mota, Pablo Conesa, José Marı́a Carazo, C.O.S. Sorzano
Software Mentions: 1
Published: almost 7 years ago

10.7150/ijbs.57673

Crystal structure of the MyRF ICA domain with its upstream β-helical stalk reveals the molecular mechanisms underlying its trimerization and self-cleavage
Cited by: 2
Author(s): Pei Wu, Xiangkai Zhen, Bowen Li, Yu Qian, Xiaochen Huang, Ning Shi
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.39919

Crystal Structures of Human C4.4A Reveal the Unique Association of Ly6/uPAR/α-neurotoxin Domain
Cited by: 3
Author(s): Yunbin Jiang, Lin Lin, Shanli Chen, Longguang Jiang, Mette C. Kriegbaum, Henrik Gårdsvoll, Lulu Anne Hansen, Jinyu Li, Michael Ploug, Cai Yuan, Mingdong Huang
Software Mentions: 1
Published: over 6 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287