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Projects: cran: PHENIX

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PHENIX

Phenotypic Integration Index
7 versions
Latest release: over 9 years ago
1 dependent package
161 downloads last month

Science Score: 75/100
Starting Score: 100 points
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Very Likely Science (75)

Papers Mentioning PHENIX 2,287

10.1016/j.cell.2009.11.015
The Structural Basis for mRNA Recognition and Cleavage by the Ribosome-Dependent Endonuclease RelE
Cited by: 199
Author(s): Cajetan Neubauer, Yong‐Gui Gao, Kasper R. Andersen, C.M. Dunham, A.C. Kelley, Jendrik Hentschel, Kenn Gerdes, V. Ramakrishnan, D.E. Brodersen
Software Mentions: 1
Published: almost 17 years ago
10.1016/j.cell.2019.05.025
Human Antibodies that Slow Erythrocyte Invasion Potentiate Malaria-Neutralizing Antibodies
Cited by: 92
Author(s): Daniel G. W. Alanine, Doris Quinkert, Rasika Kumarasingha, Shahid Mehmood, Francesca R. Donnellan, Nana Minkah, Bernadeta Dadonaite, Ababacar Diouf, Francis Galaway, Sarah E. Silk, Abhishek Jamwal, Joyce Marshall, Kazutoyo Miura, Lander Foquet, Sean C. Elias, Geneviève Labbé, Alexander D. Douglas, Jing Jin, Ruth Payne, Joseph J. Illingworth, David J. Pattinson, David Pulido, Barnabas G. Williams, Willem A. de Jongh, Gavin J. Wright, Stefan H. I. Kappe, Carol V. Robinson, Carole A. Long, Brendan S. Crabb, Paul R. Gilson, Matthew K. Higgins, Simon J. Draper
Software Mentions: 1
Published: over 7 years ago
10.1016/j.cell.2011.01.008
Structural Basis of the 9-Fold Symmetry of Centrioles
Cited by: 315
Author(s): Daiju Kitagawa, Ioannis Vakonakis, Natacha Olieric, Manuel Hilbert, Debora Keller, V. Oliéric, Miriam Bortfeld, Michèle C. Erat, Isabelle Flückiger, Pierre Gönczy, Michel O. Steinmetz
Software Mentions: 1
Published: over 15 years ago
10.1016/j.chembiol.2017.05.014
The Structure of the Guanidine-II Riboswitch
Cited by: 53
Author(s): Lin Huang, Jia Wang, David M.J. Lilley
Software Mentions: 1
Published: over 9 years ago
10.1016/j.chembiol.2017.08.021
Structure of the Guanidine III Riboswitch
Cited by: 43
Author(s): Lin Huang, Jia Wang, Timothy J. Wilson, David M.J. Lilley
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.chembiol.2018.11.001
(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition
Cited by: 44
Author(s): J.G.M. Rack, Antonio Ariza, Bryon Drown, Callum Henfrey, Edward Bartlett, Tomohiro Shirai, Paul J. Hergenrother, Ivan Ahel
Software Mentions: 1
Published: almost 8 years ago
10.1107/S1399004713034603
Hitting the target: fragment screening with acoustic<i>in situ</i>co-crystallization of proteins plus fragment libraries on pin-mounted data-collection micromeshes
Cited by: 40
Author(s): Xingyu Yin, A. Scalia, Ludmila Leroy, Christina M. Cuttitta, G.M. Polizzo, Daniel L. Ericson, Christian G. Roessler, O. Campos, Y. Millie, Rashmi Agarwal, R. Jackimowicz, Marc Allaire, Allen M. Orville, Robert M. Sweet, Alexei S. Soares
Software Mentions: 1
Published: over 12 years ago
10.1038/s41598-018-37417-6
Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding
Cited by: 26
Author(s): Magdalena Płotka, Enea Sancho‐Vaello, Sebastian Dorawa, Anna-Karina Kaczorowska, Łukasz P. Kozłowski, Tadeusz Kaczorowski, Kornelius Zeth
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.11297
Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha
Cited by: 34
Author(s): Janine Weber, Han Bao, Christoph Hartlmüller, Zhiqin Wang, Almut Windhager, Robert Janowski, Tobias Madl, Peng Jin, Dierk Niessing
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X17007713
The structure of a complex of the lactonohydrolase zearalenone hydrolase with the hydrolysis product of zearalenone at 1.60 Å resolution
Cited by: 13
Author(s): Qi Qi, Wen Yang, Hu Zhou, Deng Ming, Kai Sun, Tao Xu, Xin Hu, Hong Liu
Software Mentions: 1
Published: over 9 years ago
10.7554/eLife.14158
Viral hijacking of a replicative helicase loader and its implications for helicase loading control and phage replication
Cited by: 14
Author(s): Iris V. Hood, James M. Berger
Software Mentions: 1
Published: over 10 years ago
10.1107/S1399004714016289
Metrics for comparison of crystallographic maps
Cited by: 28
Author(s): Alexandre Urzhumtsev, Pavel V. Afonine, Vladimir Y. Lunin, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 1
Published: about 12 years ago
10.1038/s41421-018-0009-2
Crystal structure of the human 5-HT1B serotonin receptor bound to an inverse agonist
Cited by: 59
Author(s): Wanchao Yin, Xin Zhou, Dehua Yang, Parker W. de Waal, Meitian Wang, Antao Dai, Xiaoqing Cai, Chia‐Ying Huang, Ping Liu, Xiaoxi Wang, Yuanyuan Yin, Bo Liu, Yu Zhou, Jiang Wang, Hong Liu, Martin Caffrey, Karsten Melcher, Yechun Xu, Mingwei Wang, Hao Xu, Yi Jiang
Software Mentions: 1
Published: over 8 years ago
10.1038/s41421-021-00283-0
Crystal structure of the INTS3/INTS6 complex reveals the functional importance of INTS3 dimerization in DSB repair
Cited by: 9
Author(s): Jia Yu, Zhongtao Cheng, S.R. Bharath, Qingguo Sun, Nannan Su, Jun Huang, Haiwei Song
Software Mentions: 1
Published: about 5 years ago
10.1107/S1399004715015011
A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions
Cited by: 73
Author(s): Thomas D. Murray, A.Y. Lyubimov, Craig M. Ogata, Huy T. Vo, Monarin Uervirojnangkoorn, Axel T. Brunger, James M. Berger
Software Mentions: 1
Published: about 11 years ago
10.1107/S2053230X17007439
Crystal structure of<i>N</i>-acetylmannosamine kinase from<i>Fusobacterium nucleatum</i>
Cited by: 8
Author(s): Rhawnie Caing-Carlsson, Parveen Goyal, Amit Sharma, Swagatha Ghosh, Thanuja Gangi Setty, Rachel A. North, Rosmarie Friemann, S. Ramaswamy
Software Mentions: 1
Published: over 9 years ago
10.1107/S2053230X1601298X
1.65 Å resolution structure of the AraC-family transcriptional activator ToxT from<i>Vibrio cholerae</i>
Cited by: 11
Author(s): Jiaqin Li, Graham T Wehmeyer, Scott Lovell, Kevin P. Battaile, Susan M. Egan
Software Mentions: 1
Published: about 10 years ago
10.1038/s41421-018-0044-z
Structural visualization of RNA polymerase III transcription machineries
Cited by: 55
Author(s): Yanping Han, Yan Cheng, Susan Fishbain, Ivaylo Ivanov, Yuan He
Software Mentions: 1
Published: about 8 years ago
10.1038/s41421-021-00284-z
Molecular insights into the human ABCB6 transporter
Cited by: 14
Author(s): Guangyuan Song, Sensen Zhang, Mengqi Tian, Laixing Zhang, Runyu Guo, Wei Zhuo, Maojun Yang
Software Mentions: 1
Published: about 5 years ago
10.1107/S139900471400947X
Structural basis of the heterodimerization of the MST and RASSF SARAH domains in the Hippo signalling pathway
Cited by: 42
Author(s): Eunha Hwang, Hae‐Kap Cheong, Ameeq Ul Mushtaq, Hye Yeon Kim, Kwon Joo Yeo, Eun‐Hee Kim, Woo Cheol Lee, Kwang Yeon Hwang, Chaejoon Cheong, Young Ho Jeon
Software Mentions: 1
Published: over 12 years ago
10.1107/S2053230X1400884X
Crystallization and preliminary X-ray crystallographic analysis of polyphenol oxidase from<i>Juglans regia</i>(<i>jr</i>PPO1)
Cited by: 18
Author(s): Florime Zekiri, Aleksandar Bijelic, Christian Molitor, Annette Rompel
Software Mentions: 1
Published: over 12 years ago
10.1038/s41598-019-39687-0
Biochemical and structural characterization of tomato polyphenol oxidases provide novel insights into their substrate specificity
Cited by: 34
Author(s): Ioannis Kampatsikas, Aleksandar Bijelic, Annette Rompel
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-019-40937-4
An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B Cells
Cited by: 12
Author(s): Cheng-Chung Lee, Chih-Ya Yang, Long-Yau Lin, Tzu‐Ping Ko, Alarng Hsun-Lang Chang, Stanley Shi-Chung Chang, Andrew H.‐J. Wang
Software Mentions: 1
Published: over 7 years ago
10.1016/j.chom.2020.06.003
Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor
Cited by: 15
Author(s): Nicholas C. Wu, Sarah F. Andrews, Julie E. Raab, Sarah O’Connell, Chaim A. Schramm, Xintao Ding, Michael Chambers, Kwanyee Leung, Lingshu Wang, Yi Zhang, John R. Mascola, Daniel C. Douek, Julie E. Ledgerwood, Adrian B. McDermott, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago
10.1016/j.chom.2021.04.005
A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection
Cited by: 44
Author(s): Hejun Liu, Meng Yuan, Deli Huang, Sandhya Bangaru, Fangzhu Zhao, Chang-Chun David Lee, Linghang Peng, Shawn Barman, Xueyong Zhu, David Nemazee, Dennis R. Burton, Marit J. van Gils, Rogier W. Sanders, Hans Christian Kornau, S. Momsen Reincke, Harald Prüß, Jakob Kreye, Nicholas C. Wu, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago
10.1038/s41423-018-0012-4
A critical epitope in CD147 facilitates memory CD4+ T-cell hyper-activation in rheumatoid arthritis
Cited by: 22
Author(s): Na Guo, Sheng Ye, Kui Zhang, Yu Xl, Hong‐Yong Cui, Xiang-Min Yang, Lin Peng, Miaomiao Lv, Jinlin Miao, Yang Zhang, Qing Han, Rongguang Zhang, Zhi‐Nan Chen, Ping Zhu
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-019-40879-x
Crystal structure and epitope analysis of house dust mite allergen Der f 21
Cited by: 13
Author(s): Sze Lei Pang, Ken Ho, Jitka Waterman, Robert P. Rambo, Aik-Hong Teh, Indran Mathavan, Gemma Harris, Konstantinos Beis, Yee‐How Say, Matta Sri Anusha, Yang Yie Sio, Fook Tim Chew, Chyan Leong Ng
Software Mentions: 1
Published: over 7 years ago
10.1016/j.celrep.2021.109109
Diverse immunoglobulin gene usage and convergent epitope targeting in neutralizing antibody responses to SARS-CoV-2
Cited by: 21
Author(s): Xiaojuan Zhou, Fengge Ma, Jun Xie, Meng Yuan, Yunqiao Li, Namir Shaabani, Fangzhu Zhao, Deli Huang, Nicholas C. Wu, Chang-Chun David Lee, Hejun Liu, Jiali Li, Zhonghui Chen, Yazhen Hong, Wen Hsien Liu, Nengming Xiao, Dennis R. Burton, Haijian Tu, Hang Li, Xin Chen, John R. Teijaro, Ian A. Wilson, Changchun Xiao, Zhenguo Huang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-41354-3
Structural determinants of inhibition of Porphyromonas gingivalis gingipain K by KYT-36, a potent, selective, and bioavailable peptidase inhibitor
Cited by: 14
Author(s): Tibisay Guevara, Arturo Rodríguez-Banqueri, Anna M. Łasica, Mirosław Książek, Barbara Potempa, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.26111
A widespread family of serine/threonine protein phosphatases shares a common regulatory switch with proteasomal proteases
Cited by: 23
Author(s): Niels Bradshaw, V.M. Levdikov, Christina M. Zimanyi, Rachelle Gaudet, Anthony J. Wilkinson, Richard Losick
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-019-41498-2
Position 123 of halohydrin dehalogenase HheG plays an important role in stability, activity, and enantioselectivity
Cited by: 12
Author(s): Jennifer Solarczek, Thomas Klünemann, Felix Brandt, Patrick Schrepfer, Mario Wolter, Christoph R. Jacob, Wulf Blankenfeldt, Anett Schallmey
Software Mentions: 1
Published: over 7 years ago
10.1016/j.celrep.2014.06.001
FAN1 Activity on Asymmetric Repair Intermediates Is Mediated by an Atypical Monomeric Virus-type Replication-Repair Nuclease Domain
Cited by: 22
Author(s): Simon Pennell, Anne-Cécile Déclais, Jiejin Li, L.F. Haire, W.M.A. van den Berg, José W. Saldanha, Ian A. Taylor, John Rouse, David M.J. Lilley, Stephen J. Smerdon
Software Mentions: 1
Published: over 12 years ago
10.1016/j.celrep.2015.11.042
Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA
Cited by: 37
Author(s): Yijin Liu, Alasdair D.J. Freeman, Anne-Cécile Déclais, Timothy J. Wilson, Anton Gartner, David M. J. Lilley
Software Mentions: 1
Published: almost 11 years ago
10.1038/cr.2017.148
Structural basis for specific flagellin recognition by the NLR protein NAIP5
Cited by: 52
Author(s): Xuanming Yang, Fan Yang, Weiguang Wang, Ge Lin, Zhongzhi Hu, Zhifu Han, Yijun Qi, Liman Zhang, Jiawei Wang, Sen-Fang Sui, Jijie Chai
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41422-019-0237-5
Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA
Cited by: 62
Author(s): Min Zhang, Sen Yang, Raman Nelakanti, Wentao Zhao, Gaochao Liu, Zheng Li, Xiaohui Liu, Tao Wu, Andrew Xiao, Haitao Li
Software Mentions: 1
Published: over 6 years ago
10.1038/s41422-018-0091-x
Small molecule inhibitors reveal allosteric regulation of USP14 via steric blockade
Cited by: 79
Author(s): Yiwei Wang, Yuxuan Jiang, Shan Ding, Jiawang Li, Nguyễn Hải Sông, Yujing Ren, Danning Hong, Wu Cai, Bin Li, Feng Wang, Wei He, Jiawei Wang, Ziqing Mei
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.23223
The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping
Cited by: 7
Author(s): Chatrin Chatrin, Sandeep K. Talapatra, Bruno Canard, Frank Kozielski
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41422-018-0131-6
Structural insights into a high fidelity variant of SpCas9
Cited by: 36
Author(s): Muchun Guo, Kewei Ren, Yuwei Zhu, Zhonglin Tang, Yuhang Wang, Bailing Zhang, Zhiwei Huang
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41422-020-00404-6
Structural mechanism of phospholipids translocation by MlaFEDB complex
Cited by: 46
Author(s): Ximin Chi, Qiongxuan Fan, Yuanyuan Zhang, Ke Liang, Li Wan, Qiang Zhou, Yanyan Li
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-43577-w
Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coli
Cited by: 12
Author(s): Xiaolin Shen, Da‐Yong Zhou, Yuheng Lin, Jia Wang, Shuaihua Gao, P. Kandavelu, Hua Zhang, Ruihua Zhang, Bi-Cheng Wang, John P. Rose, Qipeng Yuan, Yajun Yan
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-019-43932-x
Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein
Cited by: 18
Author(s): Mariano Genera, Diana Samson, Bertrand Raynal, Ahmed Haouz, Bruno Baron, Catherine Simenel, Raphaël Guérois, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: over 7 years ago
10.1038/s41422-020-0305-x
Inhibition of SARS-CoV-2 (previously 2019-nCoV) infection by a highly potent pan-coronavirus fusion inhibitor targeting its spike protein that harbors a high capacity to mediate membrane fusion
Cited by: 1,035
Author(s): Shuai Xia, Meiqin Liu, Chao Wang, Wei Xu, Qiaoshuai Lan, Siliang Feng, Feifei Qi, Linlin Bao, Lanying Du, Shuwen Liu, Chuan Qin, Fei Sun, Shi Z, Yun Zhu, Shibo Jiang, Lu Lu
Software Mentions: 1
Published: over 6 years ago
10.1038/s41422-020-0280-2
Cryo-EM structures of PAC1 receptor reveal ligand binding mechanism
Cited by: 31
Author(s): Jia Wang, Xianqiang Song, Dandan Zhang, Xiaoqing Chen, Xun Li, Yaping Sun, Li Cui, Yunzhi Song, Yao Ding, Ruobing Ren, Essa Hu Harrington, Liaoyuan A. Hu, Wenge Zhong, Cen Xu, Xin Huang, Hongwei Wang, Yingli Ma
Software Mentions: 1
Published: over 6 years ago
10.1038/cr.2017.83
Dimeric structure of the uracil:proton symporter UraA provides mechanistic insights into the SLC4/23/26 transporters
Cited by: 82
Author(s): Xuelian Yu, Guanghui Yang, Chuangye Yan, Javier L. Baylon, Jing Jiang, Fuchu He, Gongxun Lu, Kazuya Hasegawa, Hideo Okumura, Tingliang Wang, Emad Tajkhorshid, Shuo Li, Nieng Yan
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-019-44108-3
FABP1 controls hepatic transport and biotransformation of Δ9-THC
Cited by: 15
Author(s): Matthew W. Elmes, Lauren E. Prentis, L.L. McGoldrick, Christopher J. Giuliano, Joseph Sweeney, Olivia M. Joseph, Joyce Che, Gregory Carbonetti, Keith M. Studholme, Dale G. Deutsch, Robert C. Rizzo, Steven E. Glynn, Martin Kaczocha
Software Mentions: 1
Published: over 7 years ago
10.1107/S2053230X18017338
Iterative screen optimization maximizes the efficiency of macromolecular crystallization
Cited by: 8
Author(s): Harrison G. Jones, Daniel Wrapp, M.S.A. Gilman, Michael B. Battles, Nianshuang Wang, Sofia Sacerdote, Gwo Yu Chuang, Peter D. Kwong, Jason S. McLellan
Software Mentions: 1
Published: over 7 years ago
10.1016/j.tcsw.2018.06.002
The role of the jaw subdomain of peptidoglycan glycosyltransferases for lipid II polymerization
Cited by: 6
Author(s): Avinash S. Punekar, Firdaus Samsudin, Adrian J. Lloyd, Christopher G. Dowson, David J. Scott, Syma Khalid, David I. Roper
Software Mentions: 1
Published: over 8 years ago
10.1107/S0108767311007008
Exact direct-space asymmetric units for the 230 crystallographic space groups
Cited by: 10
Author(s): Ralf W. Grosse‐Kunstleve, B. C. Wong, Marat Mustyakimov, Paul D. Adams
Software Mentions: 1
Published: over 15 years ago
10.1080/19336950.2018.1457898
X-ray crystallography of TRP channels
Cited by: 5
Author(s): Appu Kumar Singh, L.L. McGoldrick, Kei Saotome, Alexander I. Sobolevsky
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-019-44943-4
Recombinant production, purification, crystallization, and structure analysis of human transforming growth factor β2 in a new conformation
Cited by: 7
Author(s): Laura del Amo-Maestro, Laura Marino‐Puertas, Theodoros Goulas, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 7 years ago
10.1002/cmdc.201500014
Selective Targeting of the TPX2 Site of Importin-α Using Fragment-Based Ligand Design
Cited by: 11
Author(s): Rhian S. Holvey, Eugene Valkov, David Neal, Murray Stewart, Chris Abell
Software Mentions: 1
Published: over 11 years ago
10.1016/j.chembiol.2015.10.015
Unraveling the B. pseudomallei Heptokinase WcbL: From Structure to Drug Discovery
Cited by: 7
Author(s): Mirella Vivoli, Michail N. Isupov, Rebecca Nicholas, Andrew M. Hill, Andrew E. Scott, Paul Kosma, Joann L. Prior, Nicholas J. Harmer
Software Mentions: 1
Published: almost 11 years ago
10.1016/j.chembiol.2014.03.009
Synthetic Inositol Phosphate Analogs Reveal that PPIP5K2 Has a Surface-Mounted Substrate Capture Site that Is a Target for Drug Discovery
Cited by: 45
Author(s): Huanchen Wang, H. Yasmin Godage, Andrew M. Riley, Jeremy D. Weaver, Stephen B. Shears, Barry V. L. Potter
Software Mentions: 1
Published: over 12 years ago
10.1186/s13065-017-0296-y
Ultra-high resolution X-ray structures of two forms of human recombinant insulin at 100 K
Cited by: 8
Author(s): David R. Lisgarten, Rex A. Palmer, C.M.C. Lobley, C.E. Naylor, Babur Z. Chowdhry, Zakieh I. Al-Kurdi, Adnan A. Badwan, Brendan J. Howlin, Nicholas C. J. Gibbons, José W. Saldanha, J. N. Lisgarten, A.K. Basak
Software Mentions: 1
Published: about 9 years ago
10.1039/d0sc01935f
Enhancing a <i>de novo</i> enzyme activity by computationally-focused ultra-low-throughput screening
Cited by: 22
Author(s): Valeria A. Risso, Adrian Romero‐Rivera, Luis I. Gutierrez-Rus, Mariano Ortega‐Muñoz, Francisco Santoyo‐González, José A. Gavira, José M. Sanchez-Ruiz, Shina Caroline Lynn Kamerlin
Software Mentions: 1
Published: almost 7 years ago
10.1039/c8sc03759k
Structural insights reveal a recognition feature for tailoring hydrocarbon stapled-peptides against the eukaryotic translation initiation factor 4E protein
Cited by: 18
Author(s): Dilraj Lama, Anne‐Marie Liberatore, Yuri Frosi, Jessica Nakhlé, Natia Tsomaia, Tarig Bashir, David P. Lane, Christopher J. Brown, Chandra Verma, Serge Auvin
Software Mentions: 1
Published: almost 8 years ago
10.1039/c6sc01019a
Elucidation of the heme active site electronic structure affecting the unprecedented nitrite dismutase activity of the ferriheme b proteins, the nitrophorins
Cited by: 9
Author(s): Chunmao He, Hideaki Ogata, Wolfgang Lubitz
Software Mentions: 1
Published: almost 11 years ago
10.1039/c5sc03397g
A structural view of synthetic cofactor integration into [FeFe]-hydrogenases
Cited by: 115
Author(s): Julian Esselborn, Norifumi Muraki, Kathrin Klein, Vera Engelbrecht, Nils Metzler‐Nolte, Ulf‐Peter Apfel, Eckhard Hofmann, Genji Kurisu, Thomas Happe
Software Mentions: 1
Published: almost 11 years ago
10.1039/c6sc05504d
Quantum crystallography
Cited by: 106
Author(s): Simon Grabowsky, Alessandro Genoni, Hans‐Beat Bürgi
Software Mentions: 1
Published: almost 10 years ago
10.1039/c8sc01074a
A functional interplay between intein and extein sequences in protein splicing compensates for the essential block B histidine
Cited by: 24
Author(s): Kristina Friedel, Monika A. Popp, Julian C. J. Matern, E.M. Gazdag, Ilka V. Thiel, Gerrit Volkmann, Wulf Blankenfeldt, Henning D. Mootz
Software Mentions: 1
Published: almost 8 years ago
10.1039/c8sc04564j
Predicting protein–ligand binding affinity and correcting crystal structures with quantum mechanical calculations: lactate dehydrogenase A
Cited by: 10
Author(s): Iva Lukac, Hend E. Abdelhakim, Richard A. Ward, Stephen A. St-Gallay, Judith C. Madden, Andrew G. Leach
Software Mentions: 1
Published: almost 8 years ago
10.1128/JVI.03586-14
Peptide-Dependent Recognition of HLA-B*57:01 by KIR3DS1
Cited by: 64
Author(s): Geraldine M. O’Connor, J.P. Vivian, Emma Gostick, Phillip Pymm, Bernard A. P. Lafont, David A. Price, Jamie Rossjohn, Andrëw G. Brööks, Daniel W. McVicar
Software Mentions: 1
Published: over 11 years ago
10.1098/rsob.120120
Mechanistic and structural basis for inhibition of thymidylate synthase ThyX
Cited by: 36
Author(s): Tamara Basta, Yap Boum, Julien Briffotaux, Hubert F. Becker, Isabelle Lamarre-Jouenne, Jean‐Christophe Lambry, Stéphane Skouloubris, Ursula Liebl, Marc Graille, Herman van Tilbeurgh, Hannu Myllykallio
Software Mentions: 1
Published: about 14 years ago
10.1002/cbic.201402597
Hen Egg‐White Lysozyme Crystallisation: Protein Stacking and Structure Stability Enhanced by a Tellurium(VI)‐Centred Polyoxotungstate
Cited by: 67
Author(s): Aleksandar Bijelic, Christian Molitor, S.G. Mauracher, Rami Al‐Oweini, Ulrich Kortz, Annette Rompel
Software Mentions: 1
Published: almost 12 years ago
10.1107/S2053230X14003884
1.15 Å resolution structure of the proteasome-assembly chaperone Nas2 PDZ domain
Cited by: 7
Author(s): Chingakham Ranjit Singh, Scott Lovell, N. Mehzabeen, Wasimul Q. Chowdhury, Eric S. Geanes, Kevin P. Battaile, Jeroen Roelofs
Software Mentions: 1
Published: over 12 years ago
10.1038/s41598-019-48019-1
Exit tunnel modulation as resistance mechanism of S. aureus erythromycin resistant mutant
Cited by: 31
Author(s): Y. Halfon, Donna Matzov, Zohar Eyal, Anat Bashan, Ella Zimmerman, Jette Sejer Kjeldgaard, Hanne Ingmer, Ada Yonath
Software Mentions: 1
Published: about 7 years ago
10.1107/S2059798318010240
Resolving polymorphs and radiation-driven effects in microcrystals using fixed-target serial synchrotron crystallography
Cited by: 33
Author(s): Ali Ebrahim, M.V. Appleby, Danny Axford, John Beale, T. Moreno-Chicano, D.A. Sherrell, R.W. Strange, Michael A. Hough, Robin L. Owen
Software Mentions: 1
Published: almost 8 years ago
10.1038/s42003-020-01221-8
Structural basis of redox modulation on chloroplast ATP synthase
Cited by: 22
Author(s): Jay How Yang, Dewight Williams, Eaazhisai Kandiah, Petra Fromme, Po-Lin Chiu
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-48850-6
The complex structure of bile salt hydrolase from Lactobacillus salivarius reveals the structural basis of substrate specificity
Cited by: 13
Author(s): Fanxing Xu, Xiaojian Hu, Warispreet Singh, Wenjing Geng, Irina G. Tikhonova, Jun Lin
Software Mentions: 1
Published: about 7 years ago
10.1038/s42003-019-0721-y
Insights into the κ/ι-carrageenan metabolism pathway of some marine Pseudoalteromonas species
Cited by: 38
Author(s): A.G. Hettle, Joanne K. Hobbs, B. Pluvinage, Chelsea Vickers, Kento T. Abe, Orly Salama-Alber, Bailey E. McGuire, Jan‐Hendrik Hehemann, Joseph P. M. Hui, Fabrice Berrué, Arjun H. Banskota, Junzeng Zhang, Eric Bottos, Jonathan D. Van Hamme, A.B. Boraston
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-019-50249-2
Structural insight into glucose repression of the mannitol operon
Cited by: 9
Author(s): Mangyu Choe, Huitae Min, Young Ha Park, Yeon Ran Kim, Jae Sung Woo, Yeong‐Jae Seok
Software Mentions: 1
Published: about 7 years ago
10.1038/s42003-020-01179-7
The oligomeric assembly of galectin-11 is critical for anti-parasitic activity in sheep (Ovis aries)
Cited by: 4
Author(s): Dhanasekaran Sakthivel, Sarah Preston, Robin B. Gasser, Tatiana P. Soares da Costa, Julia N. Hernández, Adam Shahine, MD Shakif-Azam, Peter Lock, Jamie Rossjohn, Matthew A. Perugini, J. González, Elza Nicole Theresia Meeusen, David Piedrafita, Travis Beddoe
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.64690
Mitochondrial copper and phosphate transporter specificity was defined early in the evolution of eukaryotes
Cited by: 19
Author(s): Xinyu Zhu, Aren Boulet, Katherine M. Buckley, Casey B. Phillips, Micah G. Gammon, Laura E Oldfather, Stanley A. Moore, Scot C. Leary, Paul A. Cobine
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.62772
Cryo-EM structure of the calcium release-activated calcium channel Orai in an open conformation
Cited by: 33
Author(s): Xiaowei Hou, Ian R Outhwaite, Leanne Pedi, Stephen B. Long
Software Mentions: 1
Published: almost 6 years ago
10.1107/S2059798317008919
Protein–ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation
Cited by: 8
Author(s): Hisashi Naitow, Yoshinori Matsuura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Rie Tanaka, Tomoyuki Tanaka, Michihiro Sugahara, Jun Kobayashi, Eriko Nango, So Iwata, N. Kunishima
Software Mentions: 1
Published: about 9 years ago
10.1038/s42003-021-02362-0
Structural plasticity of mumps virus nucleocapsids with cryo-EM structures
Cited by: 9
Author(s): Saw-See Hong, Xin Su, Tianhao Li, Yuqi Qin, Na Zhang, Liuyan Yang, Lie Ma, Yun Bai, Lei Qi, Yunhui Liu, Qing-Tao Shen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-51006-1
Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7
Cited by: 24
Author(s): Takafumi Itoh, Emi Nakagawa, Moe Yoda, Akari Nakaichi, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: about 7 years ago
10.1107/S0907444913003260
Camel and bovine chymosin: the relationship between their structures and cheese-making properties
Cited by: 55
Author(s): Jesper Langholm Jensen, Anne Mølgaard, J.C. Navarro Poulsen, Marianne Harboe, Jens B. Simonsen, Andrea Lorentzen, Karin Hjernø, J.M. van den Brink, K.B. Qvist, Sine Larsen
Software Mentions: 1
Published: over 13 years ago
10.1038/s41598-019-52703-7
Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase η
Cited by: 5
Author(s): Olga Rechkoblit, Robert E. Johnson, Angeliki Buku, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: almost 7 years ago
10.1107/S0907444907046148
On macromolecular refinement at subatomic resolution with interatomic scatterers
Cited by: 56
Author(s): Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Paul D. Adams, Vladimir Y. Lunin, Alexandre Urzhumtsev
Software Mentions: 1
Published: about 19 years ago
10.1038/s42003-021-02250-7
Structural basis of coronavirus E protein interactions with human PALS1 PDZ domain
Cited by: 34
Author(s): Airah Javorsky, Patrick O. Humbert, Marc Kvansakul
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-021-01830-x
Insights on autophagosome–lysosome tethering from structural and biochemical characterization of human autophagy factor EPG5
Cited by: 9
Author(s): Sung Eun Nam, Yiu Wing Sunny Cheung, Thanh Ngoc Nguyen, Michael C. Gong, Sherilynn F. Chan, Michael Lazarou, Calvin K. Yip
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-019-0482-7
Crystal structure of human endothelin ETB receptor in complex with peptide inverse agonist IRL2500
Cited by: 27
Author(s): Chisae Nagiri, Wataru Shihoya, Asuka Inoue, Francois Marie Ngako Kadji, Junken Aoki, Osamu Nureki
Software Mentions: 1
Published: over 7 years ago
10.1038/s42003-020-01211-w
Allosteric regulation of lysosomal enzyme recognition by the cation-independent mannose 6-phosphate receptor
Cited by: 17
Author(s): Linda J. Olson, Sandeep K. Misra, Mayumi Ishihara, Kevin P. Battaile, Oliver C. Grant, Amika Sood, Robert J. Woods, Jung‐Ja P. Kim, Michael Tiemeyer, Gang Ren, Joshua S. Sharp, Nancy M. Dahms
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.63586
The allosteric modulation of complement C5 by knob domain peptides
Cited by: 17
Author(s): Alex Macpherson, Maisem Laabei, Zainab Ahdash, Melissa A. Graewert, James R. Birtley, Monika-Sarah E. D. Schulze, S.J. Crennell, Sarah Robinson, Ben Holmes, Vladas Oleinikovas, Per H. Nilsson, James Snowden, Victoria Ellis, Tom Eirik Mollnes, Charlotte Deane, Dmitri I. Svergun, Alastair D. G. Lawson, Jean M. H. van den Elsen
Software Mentions: 1
Published: over 5 years ago
10.1098/rsob.130172
Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1
Cited by: 17
Author(s): Barbara Franke, Alexander Gasch, Daniel Salazar Rodríguez, Mohamed Chami, Muzamil Majid Khan, Rüdiger Rudolf, Jaclyn Bibby, Akira Hanashima, Julius Bogomolovas, Eleonore von Castelmur, Daniel J. Rigden, Isabel Usón, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 12 years ago
10.1038/s42003-019-0642-9
Identification of a monoclonal antibody that targets PD-1 in a manner requiring PD-1 Asn58 glycosylation
Cited by: 33
Author(s): Mingzhu Wang, Junchao Wang, Rongjuan Wang, Shasha Jiao, Shuang Wang, Jinchao Zhang, Min Zhang
Software Mentions: 1
Published: almost 7 years ago
10.1038/s42003-020-0951-z
Cryo-EM structure of the volume-regulated anion channel LRRC8D isoform identifies features important for substrate permeation
Cited by: 33
Author(s): Ryoki Nakamura, Tomohiro Numata, Go Kasuya, Takeshi Yokoyama, Takashi Nishizawa, Tsukasa Kusakizako, Tosio Kato, Tatsuya Hagino, Naoshi Dohmae, Miyako Inoue, K. Watanabe, Hidenori Ichijo, Masahide Kikkawa, Mikako Shirouzu, Thomas J. Jentsch, Ryuichiro Ishitani, Yasunobu Okada, Osamu Nureki
Software Mentions: 1
Published: over 6 years ago
10.1038/s42003-021-01815-w
Entropy-driven binding of gut bacterial β-glucuronidase inhibitors ameliorates irinotecan-induced toxicity
Cited by: 13
Author(s): Hong-Shiang Lin, Chia-Yu Chen, Ting-Chien Lin, Lun-Fu Yeh, Wei‐Che Hsieh, Shijay Gao, Pierre-Alain Burnouf, Bing‐Mae Chen, T.J. Hsieh, P. Dashnyam, Yen-Hsi Kuo, Zhijay Tu, Steve R. Roffler, Chun‐Hung Lin
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.68578
Structural insights into the activation of human calcium-sensing receptor
Cited by: 16
Author(s): Xiaochen Chen, Lu Wang, Qianqian Cui, Zhanyu Ding, Han Liang, Yongjun Kou, Wenqing Zhang, Haonan Wang, Xiaomin Jia, Mingzhi Dai, Zhenzhong Shi, Yuying Li, Xiyang Li, Yong Geng
Software Mentions: 1
Published: about 5 years ago
10.1038/s42003-020-01286-5
Caffeine inhibits Notum activity by binding at the catalytic pocket
Cited by: 10
Author(s): Yuguang Zhao, Jingshan Ren, James Hillier, Wenjing Lu, E.Y. Jones
Software Mentions: 1
Published: about 6 years ago
10.1038/s42003-019-0365-y
Arsinothricin, an arsenic-containing non-proteinogenic amino acid analog of glutamate, is a broad-spectrum antibiotic
Cited by: 28
Author(s): Venkadesh Sarkarai Nadar, Jian Chen, Dharmendra S. Dheeman, Adriana E Galván, Kunie Yoshinaga-Sakurai, P. Kandavelu, Banumathi Sankaran, Masato Kuramata, Shinya Ishikawa, Barry P. Rosen, Masafumi Yoshinaga
Software Mentions: 1
Published: over 7 years ago
10.1038/s42003-021-02122-0
Mechanosensitive channel YnaI has lipid-bound extended sensor paddles
Cited by: 5
Author(s): Wenxin Hu, Zhiming Wang, Hongjin Zheng
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-018-0121-8
Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate
Cited by: 25
Author(s): Menega Ganasen, Hiromi Togashi, Hanae Takeda, Hiroyuki Asakura, Takehiko Tosha, Keitaro Yamashita, Kunio Hirata, Yoshiki Nariai, Takeshi Urano, Xian‐You Yuan, Iqbal Hamza, A. Grant Mauk, Yoshitsugu Shiro, Hiroshi Sugimoto, Hitomi Sawai
Software Mentions: 1
Published: about 8 years ago
10.1038/s42003-019-0631-z
Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
Cited by: 12
Author(s): Norifumi Muraki, Kentaro Ishii, Susumu Uchiyama, Satoru Itoh, Hisashi Okumura, Shigetoshi Aono
Software Mentions: 1
Published: about 7 years ago
10.1038/s42003-021-01906-8
Structure analysis suggests Ess1 isomerizes the carboxy-terminal domain of RNA polymerase II via a bivalent anchoring mechanism
Cited by: 7
Author(s): Kevin E.W. Namitz, Tongyin Zheng, Ashley J. Canning, Nilda L. Alicea-Velázquez, Carlos Castañeda, Michael S. Cosgrove, Steven D. Hanes
Software Mentions: 1
Published: over 5 years ago
10.1098/rsob.140041
Titin kinase is an inactive pseudokinase scaffold that supports MuRF1 recruitment to the sarcomeric M-line
Cited by: 52
Author(s): Julius Bogomolovas, Alexander Gasch, Felix Šimkovic, Daniel J. Rigden, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 12 years ago
10.1038/s42003-020-01621-w
Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide
Cited by: 10
Author(s): T.V. Heidler, Karin Ernits, Agnieszka Ziółkowska, Rolf Claesson, Karina Persson
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-021-01735-9
Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2
Cited by: 75
Author(s): Young Chang Kim, Jacek Wower, N. Maltseva, Changsoo Chang, R. Jedrzejczak, Mateusz Wilamowski, Soowon Kang, Vlad Nicolaescu, Glenn Randall, K. Michalska, A. Joachimiak
Software Mentions: 1
Published: over 5 years ago
10.1038/s42003-021-02134-w
Plant-expressed virus-like particles reveal the intricate maturation process of a eukaryotic virus
Cited by: 2
Author(s): Roger Castells‐Graells, Jonas R S Ribeiro, Tatiana Domitrovic, Emma L. Hesketh, Charlotte A. Scarff, John E. Johnson, Neil A. Ranson, David M. Lawson, George P. Lomonossoff
Software Mentions: 1
Published: over 5 years ago