cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/srep25961

X-Ray Structure and Inhibition of 3C-like Protease from Porcine Epidemic Diarrhea Virus
Cited by: 11
Author(s): Sarah E. St. John, Brandon Anson, Andrew D. Mesecar
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27498

Structural and biochemical characterization of the cell fate determining nucleotidyltransferase fold protein MAB21L1
Cited by: 33
Author(s): Carina C. de Oliveira Mann, R. Kiefersauer, Gregor Witte, Karl‐Peter Hopfner
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28664

New insights about pilus formation in gut-adapted Lactobacillus rhamnosus GG from the crystal structure of the SpaA backbone-pilin subunit
Cited by: 17
Author(s): Priyanka Chaurasia, Shivendra Pratap, Ingemar von Ossowski, Airi Palva, Vengadesan Krishnan
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29457

Dual thio-digalactoside-binding modes of human galectins as the structural basis for the design of potent and selective inhibitors
Cited by: 66
Author(s): T.J. Hsieh, Hsien Ya Lin, Zhijay Tu, Ting Chien Lin, Shang-Chuen Wu, Yu Yao Tseng, Fu‐Tong Liu, Shang-Te Danny Hsu, Chun Hung Lin
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30442

Cell-free methods to produce structurally intact mammalian membrane proteins
Cited by: 52
Author(s): Takehiro Shinoda, Naoko Shinya, Kaori Ito, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Kunio Hirata, Yoshiaki Kawano, Masaki Yamamoto, Taisuke Tomita, Yoshihiro Ishibashi, Yoshio Hirabayashi, Tomomi Kimura‐Someya, Mikako Shirouzu, Shigeyuki Yokoyama
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31487

Macromolecular structure phasing by neutron anomalous diffraction
Cited by: 13
Author(s): M.G. Cuypers, Sax A. Mason, Estelle Mossou, Michael Haertlein, V. Trevor Forsyth, Edward P. Mitchell
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32277

Time-dependent X-ray diffraction studies on urea/hen egg white lysozyme complexes reveal structural changes that indicate onset of denaturation
Cited by: 13
Author(s): Tushar Raskar, Sagar Khavnekar, M.V. Hosur
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33633

Full-length model of the human galectin-4 and insights into dynamics of inter-domain communication
Cited by: 14
Author(s): Joane K. Rustiguel, Ricardo Oliveira dos Santos Soares, Steve P. Meisburger, Katherine M. Davis, Kristina L. Malzbender, Nozomi Ando, Marcelo Dias‐Baruffi, Maria Cristina Nonato
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33632

Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin
Cited by: 83
Author(s): Takehiro Shinoda, Naoko Shinya, Kaori Ito, Noboru Ohsawa, Takaho Terada, Kunio Hirata, Yoshiaki Kawano, Masaki Yamamoto, Tomomi Kimura‐Someya, Shigeyuki Yokoyama, Mikako Shirouzu
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34756

Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Cited by: 34
Author(s): Hiroki Omura, Daisuke Oikawa, Takanori Nakane, Megumi Kato, Ryohei Ishii, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35710

Crystal structure of human aldehyde dehydrogenase 1A3 complexed with NAD+ and retinoic acid
Cited by: 56
Author(s): Andrea Moretti, Jianfeng Li, Stefano Donini, Robert W. Sobol, Menico Rizzi, Silvia Garavaglia
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35894

Crystal structures and inhibition of Trypanosoma brucei hypoxanthine–guanine phosphoribosyltransferase
Cited by: 14
Author(s): D. Teran, Dana Hocková, Michal Česnek, Alena Zı́ková, Lieve Naesens, Dianne T. Keough, Luke W. Guddat
Software Mentions: 1
Published: about 8 years ago

10.1038/srep37708

Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.
Cited by: 53
Author(s): Anna M. Łasica, Theodoros Goulas, Danuta Mizgalska, Xiaoyan Zhou, Iñaki de Diego, Mirosław Książek, Mariusz Madej, Yonghua Guo, Tibisay Guevara, Magdalena Nowak, Barbara Potempa, Apoorv Goel, Maryta Sztukowska, Apurva T. Prabhakar, Monika Bzowska, Magdalena Widziołek, Ida B. Thøgersen, Jan J. Enghild, Mary Simonian, Arkadiusz W. Kulczyk, Ky-Anh Nguyen, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: about 8 years ago

10.1038/srep39095

Structural implications of Ca2+-dependent actin-bundling function of human EFhd2/Swiprosin-1
Cited by: 22
Author(s): Kyoung Ryoung Park, Min‐Sung Kwon, Jin Yong An, Jung‐Gyu Lee, Hyung‐Seop Youn, Youngjin Lee, Jung Youn Kang, Tae Kyun Kim, Jia Jia Lim, Jeong Soon Park, Sung Haeng Lee, Woo Keun Song, Hae‐Kap Cheong, Chang‐Duk Jun, Soo Hyun Eom
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep39998

Mechanisms of Yersinia YopO kinase substrate specificity
Cited by: 9
Author(s): Wei Lin Lee, Pavithra Singaravelu, Sheena Wee, Bin Xue, Khay Chun Ang, Jayantha Gunaratne, Jonathan M. Grimes, Kunchithapadam Swaminathan, Robert Robinson
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep42374

Heteroaryldihydropyrimidine (HAP) and Sulfamoylbenzamide (SBA) Inhibit Hepatitis B Virus Replication by Different Molecular Mechanisms
Cited by: 100
Author(s): Zheng Zhou, Tai‐Shan Hu, Xue Zhou, Steffen Wildum, Fernando García-Alcalde, Zhiheng Xu, Daitze Wu, Yi Mao, Xiao‐Jun Tian, Yuan Zhou, Fang Shen, Zhisen Zhang, Guozhi Tang, Isabel Nájera, Guang Yang, Hong C. Shen, John A. T. Young, Ning Qin
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep42580

A Mutation Identified in Neonatal Microcephaly Destabilizes Zika Virus NS1 Assembly in Vitro
Cited by: 24
Author(s): Deping Wang, Cheng Chen, Shengnan Liu, Hailiang Zhou, Kailin Yang, Qi Zhao, Xiaoyun Ji, Chen Chen, Wei Xie, Zefang Wang, Li-Zhi Mi, Haitao Yang
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep44542

Structural insights into the γ-lactamase activity and substrate enantioselectivity of an isochorismatase-like hydrolase from Microbacterium hydrocarbonoxydans
Cited by: 9
Author(s): Shuaihua Gao, Yu Zhou, Weiwei Zhang, Wenhe Wang, You Yu, Yajuan Mu, Hao Wang, Xinqi Gong, Guojun Zheng, Yue Feng
Software Mentions: 1
Published: over 7 years ago

10.1038/srep44832

Structural and functional studies of a noncanonical Dicer from Entamoeba histolytica
Cited by: 5
Author(s): Xiang Yu, Xuhang Li, Lina Zheng, Jinbiao Ma, Jianhua Gan
Software Mentions: 1
Published: over 7 years ago

10.1038/srep45389

Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase
Cited by: 15
Author(s): Alexander Minges, Daniel Ciupka, Christian Winkler, Astrid Höppner, Holger Gohlke, Georg Groth
Software Mentions: 1
Published: over 7 years ago

10.1038/srep45604

Atomic resolution structure of serine protease proteinase K at ambient temperature
Cited by: 24
Author(s): Tetsuya Masuda, Mamoru Suzuki, Shiro Inoue, Changyong Song, Takanori Nakane, Eriko Nango, Rie Tanaka, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Bunzo Mikami, Osamu Nureki, Keiji Numata, So Iwata, Michihiro Sugahara
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46370

SnoN Stabilizes the SMAD3/SMAD4 Protein Complex
Cited by: 15
Author(s): K. Wallden, T. Nyman, Bengt Hållberg
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46738

Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily
Cited by: 19
Author(s): Elisa Lanfranchi, Tea Pavkov‐Keller, Eva-Maria Koehler, Matthias Diepold, Kerstin Steiner, Barbara Darnhofer, Jürgen Hartler, Tom van den Bergh, Han Joosten, Mandana Gruber‐Khadjawi, Gerhard G. Thallinger, Ruth Birner‐Gruenberger, Karl Gruber, Margit Winkler, Anton Glieder
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00610-0

Novel insights into the interaction of UBA5 with UFM1 via a UFM1-interacting sequence
Cited by: 21
Author(s): P. Padala, Walaa Oweis, Bayan Mashahreh, Nadine Soudah, Einav Cohen-Kfir, Emily A. Todd, Christopher E. Berndsen, Reuven Wiener
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00761-0

Hydroxyethyl cellulose matrix applied to serial crystallography
Cited by: 73
Author(s): Michihiro Sugahara, Takanori Nakane, Tetsuya Masuda, Mamoru Suzuki, Shiro Inoue, Changyong Song, Rie Tanaka, Toru Nakatsu, Eiichi Mizohata, Fumiaki Yumoto, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Keiji Numata, Eriko Nango, So Iwata
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00919-w

Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes
Cited by: 19
Author(s): Pedro Bule, Victor D. Alves, Vered Israeli-Ruimy, Ana Luı́sa Carvalho, L.M.A. Ferreira, Steven P. Smith, Harry J. Gilbert, Shabir Najmudin, Edward A. Bayer, Carlos M. G. A. Fontes
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02044-0

Structural insights into a 20.8-kDa tegumental-allergen-like (TAL) protein from Clonorchis sinensis
Cited by: 9
Author(s): Chang Hwa Jo, Jonghyeon Son, Sulhee Kim, Takashi Oda, Jae-Hoon Kim, Myoung Ro Lee, Mamoru Sato, Hyun Tae Kim, Satoru Unzai, Sam Yong Park, Kwang Yeon Hwang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02153-w

Lipoxygenase 2 from Cyanothece sp. controls dioxygen insertion by steric shielding and substrate fixation
Cited by: 13
Author(s): Julia Newie, Piotr Neumann, Martin Werner, Ricardo A. Mata, Ralf Ficner, Ivo Feußner
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03034-y

Pwp2 mediates UTP-B assembly via two structurally independent domains
Cited by: 9
Author(s): Fanny Boissier, Christina Schmidt, Jan Linnemann, Sébastien Fribourg, Jorge Pérez-Fernández
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03768-9

Crystal structure of the DNA-binding domain of Myelin-gene Regulatory Factor
Cited by: 11
Author(s): Xiangkai Zhen, Bowen Li, Fang Hu, Shufeng Yan, Gabriele Meloni, Hui‐Liang Li, Ning Shi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03567-2

High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway
Cited by: 26
Author(s): Seiji Ishii, Kenji Fukui, Satoshi Yokoshima, Kazuo Kumagai, Youko Beniyama, Tetsuya Kodama, Tohru Fukuyama, Takayoshi Okabe, Tetsuo Nagano, Hirotatsu Kojima, Takayuki Yano
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-05889-7

An engineered protein antagonist of K-Ras/B-Raf interaction
Cited by: 54
Author(s): Monique J. Kauke, Michael W. Traxlmayr, Jillian A. Parker, Jonathan D. Kiefer, Ryan Knihtila, John H. McGee, Greg Verdine, Carla Mattos, K. Dane Wittrup
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06576-3

The Tnfaip8-PE complex is a novel upstream effector in the anti-autophagic action of insulin
Cited by: 18
Author(s): Ji Soo Kim, Jimin Park, Mi Sun Kim, Ji Young Ha, Ye Won Jang, Dongkun Shin, Jin H. Son
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07755-y

Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations
Cited by: 20
Author(s): R.M. Counago, C.K. Allerston, P. Savitsky, Hátylas Azevedo, Paulo H. Godoi, Carrow Wells, Alessandra Mascarello, F. Gama, Katlin B. Massirer, William J. Zuercher, Cristiano Ruch Werneck Guimarães, O. Gileadi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07887-1

Crystal Structure of MpPR-1i, a SCP/TAPS protein from Moniliophthora perniciosa, the fungus that causes Witches’ Broom Disease of Cacao
Cited by: 11
Author(s): Renata Moro Baroni, Zhipu Luo, Rabih Darwiche, Elissa M. Hudspeth, Roger Schneiter, Gonçalo Amarante Guimarães Pereira, Jorge Maurı́cio Costa Mondego, Oluwatoyin A. Asojo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09538-x

Structural basis for therapeutic inhibition of influenza A polymerase PB2 subunit
Cited by: 15
Author(s): Xiaolei Ma, Lili Xie, Charles Wartchow, Robert Warne, Yongjin Xu, Alexey Rivkin, David C. Tully, S. Shia, Kyoko Uehara, Dianna M. Baldwin, Gladys T. Muiru, Weidong Zhong, Isabel Zaror, Dirksen E. Bussiere, Vincent H. J. Léonard
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-10249-6

The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery
Cited by: 8
Author(s): Marie S. Prevost, Nikos Pinotsis, Maud Dumoux, Richard Hayward, Gabriel Waksman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-11031-4

Structural basis for CRMP2-induced axonal microtubule formation
Cited by: 38
Author(s): Shinsuke Niwa, Fumio Nakamura, Yuri Tomabechi, Mari Aoki, Hideki Shigematsu, Takashi Matsumoto, Atsushi Yamagata, Shuya Fukai, Nobutaka Hirokawa, Yoshio Goshima, Mikako Shirouzu, Ryo Nitta
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11542-0

Laminarinase from Flavobacterium sp. reveals the structural basis of thermostability and substrate specificity
Cited by: 20
Author(s): Hui‐Min Qin, Takuya Miyakawa, Akira Inoue, Akira Nakamura, Ryuji Nishiyama, Takao Ojima, Masaru Tanokura
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12409-0

The crystal structure of the regulatory domain of the human sodium-driven chloride/bicarbonate exchanger
Cited by: 7
Author(s): Carolina Alvadia, T. Sommer, Kaare Bjerregaard-Andersen, Helle Hasager Damkier, Michele Montrasio, Christian Aalkjær, J. Preben Morth
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12186-w

Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA
Cited by: 15
Author(s): Bo-Na Kim, Minsang Shin, Soonhoi Ha, Suk-Youl Park, Pil-Won Seo, Andreas Hofmann, Ji Soo Kim
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13669-6

Structural and Mechanistic Analysis of Drosophila melanogaster Agmatine N-Acetyltransferase, an Enzyme that Catalyzes the Formation of N-Acetylagmatine
Cited by: 7
Author(s): Daniel R. Dempsey, Derek A. Nichols, Matthew R. Battistini, O.A. Pemberton, Santiago Rodriguez Ospina, Xiujun Zhang, Anne-Marie Carpenter, Brian G. O’Flynn, James W. Leahy, Ankush Kanwar, Eric M. Lewandowski, Yu Chen, David J. Merkler
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14372-2

Helicobacter pylori chemoreceptor TlpC mediates chemotaxis to lactate
Cited by: 54
Author(s): Mayra A. Machuca, Kevin S. Johnson, Yu C. Liu, David Steer, Karen M. Ottemann, Anna Roujeinikova
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14448-z

Structural dissection of human metapneumovirus phosphoprotein using small angle x-ray scattering
Cited by: 19
Author(s): Max Renner, Guido C. Paesen, Claire M. Grison, Sébastien Granier, Jonathan M. Grimes, C. Leyrat
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14797-9

Modular endolysin of Burkholderia AP3 phage has the largest lysozyme-like catalytic subunit discovered to date and no catalytic aspartate residue
Cited by: 25
Author(s): Barbara Maciejewska, Karol Źrubek, Akbar Espaillat, M. Wiśniewska, Krzysztof P. Rembacz, Felipe Cava, Grzegorz Dubin, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16607-8

Structural insights into the potency of SK channel positive modulators
Cited by: 19
Author(s): Young Woo Nam, Razan Orfali, Tingting Liu, Kunqian Yu, Meng Cui, Heike Wulff, Miao Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17677-4

Structural insight into a CE15 esterase from the marine bacterial metagenome
Cited by: 17
Author(s): Concetta De Santi, Osman Gani, Ronny Helland, Adele Kim Williamson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16876-3

Insulin in motion: The A6-A11 disulfide bond allosterically modulates structural transitions required for insulin activity
Cited by: 27
Author(s): Bianca J. van Lierop, Shee Chee Ong, Alessia Belgi, Carlie Delaine, Sofianos Andrikopoulos, Naomi L. Haworth, John G. Menting, Michael C. Lawrence, Andrea J. Robinson, Briony E. Forbes
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18045-y

A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY
Cited by: 59
Author(s): Daniel J. Scott, Natalie Gunn, Kelvin Junwei Yong, Verena C. Wimmer, Nicholas A. Veldhuis, Leesa M. Challis, Mouna Haidar, Steven Petrou, Ross A. D. Bathgate, Michael D. W. Griffin
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20067-z

Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis
Cited by: 22
Author(s): Michael Hall, Yoshinori Hasegawa, Fuminobu Yoshimura, Karina Persson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20634-4

Structural and mechanistic divergence of the small (p)ppGpp synthetases RelP and RelQ
Cited by: 46
Author(s): Wieland Steinchen, Marian Samuel Vogt, Florian Altegoer, Pietro Ivan Giammarinaro, Petra Horvatek, Christiane Wolz, Gert Bange
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21476-w

6-Thioguanine is a noncompetitive and slow binding inhibitor of human deubiquitinating protease USP2
Cited by: 40
Author(s): Shang-Ju Chuang, Sha-Yen Cheng, Hui-Chi Tang, Chee‐Ching Sun, Chi-Yuan Chou
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21955-0

Understanding the Structure, Multimerization, Subcellular Localization and mC Selectivity of a Genomic Mutator and Anti-HIV Factor APOBEC3H
Cited by: 36
Author(s): Fumiaki Ito, Hanjing Yang, Xiao Xiao, Shuxing Li, Aaron Wolfe, Brett Zirkle, В. М. Арутюнян, Xiaojiang S. Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25237-7

Structures of Angptl3 and Angptl4, modulators of triglyceride levels and coronary artery disease
Cited by: 33
Author(s): Ekaterina Biterova, Mariam Esmaeeli, Heli I. Alanen, Mirva J. Saaranen, Lloyd W. Ruddock
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25231-z

Inherent flexibility of CLIC6 revealed by crystallographic and solution studies
Cited by: 15
Author(s): Alisa Ferofontov, Roi Strulovich, Milit Marom, Moshe Giladi, Yoni Haitin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25487-5

Patient-derived mutations within the N-terminal domains of p85α impact PTEN or Rab5 binding and regulation
Cited by: 12
Author(s): Paul Mellor, Jeremy Marshall, Xuan Ruan, Dielle E. Whitecross, Rebecca Ross, Margaret A. Knowles, Stanley A. Moore, Deborah H. Anderson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25157-6

Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators
Cited by: 13
Author(s): Sabina Sarvan, François Charih, Momen Askoura, James Butcher, J.S. Brunzelle, Alain Stintzi, Jean Couture
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2011.11.001

Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824
Cited by: 77
Author(s): Susan E. Cellitti, Jennifer Shaffer, David H. Jones, Tathagata Mukherjee, Meera Gurumurthy, Badry Bursulaya, Helena I. Boshoff, Inhee Choi, Amit Nayyar, Yong Sok Lee, Joseph Cherian, Pornwaratt Niyomrattanakit, Thomas Dick, Ujjini H. Manjunatha, Clifton E. Barry, Glen Spraggon, Bernhard H. Geierstanger
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.05.002

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2
Cited by: 20
Author(s): Lyudmila Dimitrova, Eugene Valkov, Shintaro Aibara, Dirk Flemming, Stephen H. McLaughlin, Ed Hurt, Murray Stewart
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.12.015

Family-wide Structural Analysis of Human Numb-Associated Protein Kinases
Cited by: 113
Author(s): F.J. Sorrell, M. Szklarz, K.R. Abdul Azeez, J.M. Elkins, Stefan Knapp
Software Mentions: 1
Published: over 8 years ago

10.1016/j.str.2018.03.014

Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1
Cited by: 30
Author(s): Deg Briggs, Erhard Hohenester
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2018.07.011

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3
Cited by: 43
Author(s): J.J.B. Cockburn, Sophie J. Hesketh, Peter O. Mulhair, Maren Thomsen, Mary J. O’Connell, Michael Way
Software Mentions: 1
Published: about 6 years ago

10.1016/j.str.2019.06.008

Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation
Cited by: 4
Author(s): Mads Gabrielsen, Lori Buetow, Dominika Kowalczyk, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: about 5 years ago

10.1016/j.celrep.2015.11.042

Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA
Cited by: 37
Author(s): Yijin Liu, Alasdair D.J. Freeman, Anne-Cécile Déclais, Timothy J. Wilson, Anton Gartner, David M. J. Lilley
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 4 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
Cited by: 51
Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: about 4 years ago

10.1038/s41398-018-0258-8

Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression
Cited by: 11
Author(s): Hang Zhou, Zhongshan Cheng, Nick Bass, John H. Krystal, Lindsay A. Farrer, Henry R. Kranzler, Joel Gelernter
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.06.08.141267

Structural basis of a public antibody response to SARS-CoV-2
Cited by: 18
Author(s): Meng Yuan, Hejun Liu, Nicholas C. Wu, Chang-Chun David Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry J Tien, Thomas F. Rogers, Elise Landais, Devin Sok, Joseph G. Jardine, Dennis R. Burton, Ian A. Wilson
Software Mentions: 1
Published: over 4 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 4 years ago

10.1101/2021.01.26.428356

Sequence signatures of two IGHV3-53/3-66 public clonotypes to SARS-CoV-2 receptor binding domain
Cited by: 3
Author(s): Timothy J.C. Tan, Meng Yuan, Kaylee Kuzelka, Gilberto C Padron, Jacob R. Beal, Xin Chen, Yiquan Wang, Joel Rivera-Cardona, Xueyong Zhu, Beth M. Stadtmueller, Christopher B. Brooke, Ian A. Wilson, Nicholas C. Wu
Software Mentions: 1
Published: almost 4 years ago

10.1101/2020.09.18.302901

SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism
Cited by: 34
Author(s): Ming Shi, Long Wang, Pietro Fontana, Setu M. Vora, Ying Zhang, Tian‐Min Fu, Judy Lieberman, Hao Wu
Software Mentions: 1
Published: about 4 years ago

10.1101/2020.09.21.305441

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 4
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 4 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00492-16

Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function
Cited by: 30
Author(s): Nam K. Tonthat, Praveen R. Juvvadi, Hengshan Zhang, Soo Chan Lee, Ronald A. Venters, Leonard D. Spicer, William J. Steinbach, Joseph Heitman, Maria A. Schumacher
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00872-16

Molecular Insights into the Fungus-Specific Serine/Threonine Protein Phosphatase Z1 in Candida albicans
Cited by: 21
Author(s): Emily Chen, M.S. Choy, Katalin Petrényi, Zoltán Kónya, Ferenc Erdődi, Viktor Dombrádi, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.01543-16

Emergence of a Potent Multidrug Efflux Pump Variant That Enhances Campylobacter Resistance to Multiple Antibiotics
Cited by: 81
Author(s): Hong Yao, Zhangqi Shen, Yang Wang, Fengru Deng, Dejun Liu, Gaowa Naren, Lei Dai, Chih‐Chia Su, Bing Wang, Shaolin Wang, Congming Wu, Edward Yu, Qijing Zhang, Jianzhong Shen
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
Cited by: 21
Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
Cited by: 17
Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
Cited by: 38
Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
Cited by: 19
Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
Cited by: 26
Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01497-19

Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO 2 Capture by a Surface-Exposed [Fe 4 S 4 ] Cluster
Cited by: 10
Author(s): Lee A. Rettberg, Wonchull Kang, Martin T. Stiebritz, Caleb J. Hiller, Chi Chung Lee, Jasper Liedtke, Markus W. Ribbe, Yilin Hu
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00280-20

The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site
Cited by: 34
Author(s): Jérémie Prévost, W.D. Tolbert, Halima Medjahed, Rebekah Sherburn, Navid Madani, Daria Zoubchenok, Gabrielle Gendron‐Lepage, Althea Gaffney, Melissa C. Grenier, Sharon Kirk, Natasha Gupta Vergara, Changze Han, Brendan T. Mann, Agnès Laurence Chenine, Adel Ahmed Rashad Ahmed, Irwin M. Chaiken, Frank Kirchhoff, Beatrice H. Hahn, Hillel Haim, Cameron F. Abrams, Amos B. Smith, Joseph Sodroski, Marzena Pazgier, Andrés Finzi
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01303-20

Structure and Multitasking of the c-di-GMP-Sensing Cellulose Secretion Regulator BcsE
Cited by: 12
Author(s): Samira Zouhir, W. Abidi, M. Caleechurn, Petya V. Krasteva
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01488-20

Structural Characterization of the Essential Cell Division Protein FtsE and Its Interaction with FtsX in Streptococcus pneumoniae
Cited by: 10
Author(s): Martín Alcorlo, Daniel Straume, Joe Lutkenhaus, Leiv Sigve Håvarstein, J.A. Hermoso
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.02012-20

Molecular Deceleration Regulates Toxicant Release to Prevent Cell Damage in Pseudomonas putida S16 (DSM 28022)
Cited by: 4
Author(s): Hongzhi Tang, Kunzhi Zhang, Haiyang Hu, Geng Wu, Weiwei Wang, Xiongyu Zhu, Gongquan Liu, Ping Xu
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.02772-20

Structure of the Receptor Binding Domain of EnvP(b)1, an Endogenous Retroviral Envelope Protein Expressed in Human Tissues
Cited by: 5
Author(s): K. McCarthy, Joseph L. Timpona, Simon Jenni, Louis-Marie Bloyet, Vesna Brusic, Welkin E. Johnson, Sean P. J. Whelan, Lindsey R. Robinson-McCarthy
Software Mentions: 1
Published: almost 4 years ago

10.1128/mBio.02924-20

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2
Cited by: 4
Author(s): Alexander Stevens, Katherine A. Muratore, Yanxiang Cui, Patricia J. Johnson, Zhou Zh
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.03199-20

Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring
Cited by: 19
Author(s): Norihiro Takekawa, Akihiro Kawamoto, Mayuko Sakuma, Takayuki Kato, Seiji Kojima, Miki Kinoshita, Tetsuo Minamino, Keiichi Namba, Michio Homma, Katsumi Imada
Software Mentions: 1
Published: over 3 years ago

10.1093/hmg/ddv007

Crystal structure of human persulfide dioxygenase: structural basis of ethylmalonic encephalopathy
Cited by: 44
Author(s): Ilaria Pettinati, Jürgen Brem, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: almost 10 years ago

10.1107/S2052252517002433

Crystallographic and SAXS studies ofS-adenosyl-<scp>L</scp>-homocysteine hydrolase fromBradyrhizobium elkanii
Cited by: 10
Author(s): Tomasz Manszewski, Kamil Szpotkowski, Mariusz Jaskólski
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252516010514

Neutron structure of human carbonic anhydrase II in complex with methazolamide: mapping the solvent and hydrogen-bonding patterns of an effective clinical drug
Cited by: 25
Author(s): Mayank Aggarwal, Andrey Kovalevsky, Hector A. Velazquez, S.Z. Fisher, Jeremy C. Smith, Robert McKenna
Software Mentions: 1
Published: over 8 years ago

10.1107/S205225251701750X

Crystal structure of peroxiredoxin 3 from Vibrio vulnificus and its implications for scavenging peroxides and nitric oxide
Cited by: 6
Author(s): Jinsook Ahn, Kyung Ku Jang, Inseong Jo, Nurhasni Hasan, Jong Gyu Lim, Jin‐Wook Yoo, Sang Ho Choi, Nam‐Chul Ha
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: PHENIX

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