cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-64792-w

The pivot point arginines identified in the β-pinwheel structure of C-terminal domain from Salmonella Typhi DNA Gyrase A subunit
Cited by: 1
Author(s): Ekta Sachdeva, Gurpreet Kaur, Pragya Tiwari, Deepali Gupta, T.P. Singh, A.S. Ethayathulla, Punit Kaur
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-65123-9

Aspartate/asparagine-β-hydroxylase: a high-throughput mass spectrometric assay for discovery of small molecule inhibitors
Cited by: 14
Author(s): Lennart Brewitz, Anthony Tumber, Inga Pfeffer, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66050-5

A disulfide constrains the ToxR periplasmic domain structure, altering its interactions with ToxS and bile-salts
Cited by: 8
Author(s): Charles R. Midgett, Rachel A. Swindell, Maria Pellegrini, F. Jon Kull
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67069-4

Structural and enzymatic characterisation of the Type III effector NopAA (=GunA) from Sinorhizobium fredii USDA257 reveals a Xyloglucan hydrolase activity
Cited by: 4
Author(s): Jonathan Dorival, Sonia Philys, Elisa Giuntini, Romain Brailly, Jérôme de Ruyck, Mirjam Czjzek, Emanuele G. Biondi, Coralie Bompard
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68502-4

Structural basis of SALM3 dimerization and synaptic adhesion complex formation with PTPσ
Cited by: 3
Author(s): Sudeep Karki, Alexander V. Shkumatov, Sungchul Bae, Hyeonho Kim, Jaewon Ko, Tommi Kajander
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68355-x

The discovery of a new antibody for BRIL-fused GPCR structure determination
Cited by: 19
Author(s): Hikaru Miyagi, Hidetsugu Asada, Mina Suzuki, Yuichi Takahashi, Mai Yasunaga, Chiyo Suno, So Iwata, Junichi Saito
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-68612-z

Structure and mechanism of potent bifunctional β-lactam- and homoserine lactone-degrading enzymes from marine microorganisms
Cited by: 10
Author(s): Christopher Selleck, Marcelo Monteiro Pedroso, Liam A. Wilson, Stefan Krco, Esmée Gianna Knaven, Manfredi Miraula, Nataša Mitić, James A. Larrabee, Thomas Brück, Alice M. Clark, Luke W. Guddat
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73452-y

The crystal structure of mycobacterial epoxide hydrolase A
Cited by: 3
Author(s): Eike C. Schulz, Sara R. Henderson, Boris Illarionov, Thomas Crosskey, Stacey M. Southall, Boris Krichel, Charlotte Uetrecht, Markus Fischer, Matthias Wilmanns
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-78148-x

Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans
Cited by: 2
Author(s): Jun Young Lee, Young Woo Park, Myung Yeon Lee, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-79654-8

Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome
Cited by: 14
Author(s): Qianqian Wang, Vinod K. Vogirala, Aghil Soman, Nikolay V. Berezhnoy, Zhehui Barry Liu, Andrew Barnabas Wong, Nikolay Korolev, Chun‐Jen Su, Sara Sandin, Lars Nordenskiöld
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80588-4

Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery
Cited by: 14
Author(s): Lyra Chang, James C. Campbell, Idris Raji, Shiva Krishna Reddy Guduru, Prasanna Kandel, Michelle Nguyen, Steven Liu, Kevin Tran, Navneet K Venugopal, Bethany C Taylor, Matthew V. Holt, Nicolas L. Young, Errol L. G. Samuel, Prashi Jain, Conrad Santini, Banumathi Sankaran, Kevin R. MacKenzie, Damian W. Young
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83438-z

Three-dimensional structure of human cyclooxygenase (hCOX)-1
Cited by: 24
Author(s): Morena Miciaccia, Benny Danilo Belviso, Mariaclara Iaselli, Gino Cingolani, Savina Ferorelli, Marianna Cappellari, Paola Loguercio Polosa, Maria Grazia Perrone, Rocco Caliandro, Antonio Scilimati
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85559-x

Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity
Cited by: 12
Author(s): Naazneen Khan, Tatsuya Arai, Sakae Tsuda, Hidemasa Kondo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89785-1

A PROSS-designed extensively mutated estrogen receptor α variant displays enhanced thermal stability while retaining native allosteric regulation and structure
Cited by: 12
Author(s): Mark Kriegel, Hanna J. Wiederanders, Sewar Alkhashrom, Jutta Eichler, Yves A. Muller
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-91596-3

Anthrax toxin translocation complex reveals insight into the lethal factor unfolding and refolding mechanism
Cited by: 5
Author(s): Alexandra J. Machen, Mark T. Fisher, Bret Freudenthal
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-92554-9

Stereoselective synthesis of a 4-⍺-glucoside of valienamine and its X-ray structure in complex with Streptomyces coelicolor GlgE1-V279S
Cited by: 2
Author(s): Anshupriya Si, Thilina D. Jayasinghe, Radhika Thanvi, Sunayana Kapil, Donald R. Ronning, Steven J. Sucheck
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-95123-2

Structure of the master regulator Rns reveals an inhibitor of enterotoxigenic Escherichia coli virulence regulons
Cited by: 9
Author(s): Charles R. Midgett, Kacey Marie Talbot, Jessica L. Day, George P. Munson, F. Jon Kull
Software Mentions: 1
Published: about 5 years ago

10.1038/s41392-021-00712-2

Structural and functional basis for pan-CoV fusion inhibitors against SARS-CoV-2 and its variants with preclinical evaluation
Cited by: 33
Author(s): Shuai Xia, Qiaoshuai Lan, Yun Zhu, Chao Wang, Wei Xu, Yutang Li, Lijue Wang, Fanke Jiao, Jie Zhou, Hua Chen, Qian Wang, Xiujun Cai, Yang Wu, Jie Gao, Huan Liu, Ge Sun, Jan Münch, Frank Kirchhoff, Zhenghong Yuan, Youhua Xie, Fei Sun, Shibo Jiang, Lu Lu
Software Mentions: 1
Published: about 5 years ago

10.1186/1751-0473-7-5

Automatic Fortran to C++ conversion with FABLE
Cited by: 13
Author(s): Ralf W. Grosse‐Kunstleve, Thomas C. Terwilliger, Nicholas K. Sauter, Paul D. Adams
Software Mentions: 1
Published: about 14 years ago

10.1063/1.4984052

Structural and dynamic insights into the role of conformational switching in the nuclease activity of the <i>Xanthomonas albilineans</i> Cas2 in CRISPR-mediated adaptive immunity
Cited by: 8
Author(s): Donghyun Ka, Sung Kyu Hong, Ugeene Jeong, Migyeong Jeong, Nayoung Suh, Jeong‐Yong Suh, Euiyoung Bae
Software Mentions: 1
Published: over 9 years ago

10.1063/1.5092803

Structural and dynamical description of the enzymatic reaction of a phosphohexomutase
Cited by: 7
Author(s): Kyle M. Stiers, Abigail C. Graham, Jian‐She Zhu, David L. Jakeman, Jay C. Nix, Lesa J. Beamer
Software Mentions: 1
Published: over 7 years ago

10.1063/1.5120527

High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures
Cited by: 16
Author(s): Juan Sanchez, Melissa Carrillo, Suraj Pandey, Moraima Noda, Luis Aldama, Denisse Feliz, Elin Claesson, Weixiao Yuan Wahlgren, Gregory Tracy, Phu Duong, Angela C. Nugent, Andrew Field, V. Šrajer, Christopher Kupitz, So Iwata, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Luo Fangjia, Kensuke Tono, Shigeki Owada, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojković
Software Mentions: 1
Published: almost 7 years ago

10.1063/1.5130582

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin
Cited by: 3
Author(s): Ming Dong, Mackenzie L. Lauro, Timothy J. Koblish, Brian J. Bahnson
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2012.08.011

The CDK9 Tail Determines the Reaction Pathway of Positive Transcription Elongation Factor b
Cited by: 31
Author(s): Sonja Baumli, A.J. Hole, Lan-Zhen Wang, M.E.M. Noble, Jane Endicott
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.str.2008.08.007

Structural Analysis of the Interactions Between Paxillin LD Motifs and α-Parvin
Cited by: 35
Author(s): Sonja Lorenz, Ioannis Vakonakis, E.D. Lowe, Iain D. Campbell, M.E.M. Noble, M.K. Hoellerer
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.str.2008.05.006

Structural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46
Cited by: 193
Author(s): Natalia V. Murzina, X.Y. Pei, Wei Zhang, Mike Sparkes, Jose Vicente-Garcia, J. Venkatesh Pratap, Stephen H. McLaughlin, Tom Rolef Ben-Shahar, Alain Verreault, Ben F. Luisi, Ernest D. Laue
Software Mentions: 1
Published: about 18 years ago

10.1016/j.str.2014.11.020

Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
Cited by: 19
Author(s): G. Bunkóczi, Björn Wallner, Randy J. Read
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.33572

Ensemble cryoEM elucidates the mechanism of insulin capture and degradation by human insulin degrading enzyme
Cited by: 41
Author(s): Zhening Zhang, Wenyuan Liang, L.J. Bailey, Yong Zi Tan, Hui Wei, Andrew Wang, M Fărcăşanu, Virgil A Woods, Lauren A. McCord, David E. Lee, Weifeng Shang, Rébecca Deprez-Poulain, Benoît Déprez, David R. Liu, Shohei Koide, Anthony A. Kossiakoff, Li Sheng, Bridget Carragher, Clinton S. Potter, Wei‐Jen Tang
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.11860

Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence
Cited by: 76
Author(s): Udo Heintz, Ilme Schlichting
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.47405

Ctf4 organizes sister replisomes and Pol α into a replication factory
Cited by: 41
Author(s): Ziming Yuan, Roxana E. Georgescu, Ruda de Luna Almeida Santos, Dongke Zhang, Lin Bai, Nina Y. Yao, Gongpu Zhao, Mike O'Donnell, Huilin Li
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.44760

Structural basis of phosphatidylcholine recognition by the C2–domain of cytosolic phospholipase A2α
Cited by: 26
Author(s): Yoshinori Hirano, Yong-Guang Gao, Daniel J. Stephenson, Ngoc Vu, Lucy Malinina, Dhirendra K. Simanshu, Charles E. Chalfant, Dinshaw J. Patel, Rhoderick E. Brown
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.09066

Structural basis of interprotein electron transfer in bacterial sulfite oxidation
Cited by: 17
Author(s): Aaron P. McGrath, Elise M Laming, Gema Alejandra Botana García, Marc Kvansakul, J.M. Guss, Jill Trewhella, Benoît Calmes, Paul V. Bernhardt, Graeme R. Hanson, Ulrike Kappler, M.J. Maher
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.56664

Atomic structure of a mitochondrial complex I intermediate from vascular plants
Cited by: 43
Author(s): María Maldonado, Abhilash Padavannil, Long Zhou, Fei Guo, James A. Letts
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.11911

Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome
Cited by: 30
Author(s): Qianglin Fang, Ping Chen, Mingzhu Wang, Junshun Fang, Na Yang, Guohong Li, Rui-Ming Xu
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.33067

Crystal structure of intraflagellar transport protein 80 reveals a homo-dimer required for ciliogenesis
Cited by: 30
Author(s): Michael Täschner, Anna Lorentzen, André Mourão, Toby Collins, Grace Freke, Dale Moulding, J. Basquin, Dagan Jenkins, Esben Lorentzen
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.37774

Crystal structure of the full Swi2/Snf2 remodeler Mot1 in the resting state
Cited by: 3
Author(s): A. Butryn, Stephan Woike, Savera J. Shetty, David T. Auble, Karl‐Peter Hopfner
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2015.11.042

Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA
Cited by: 37
Author(s): Yijin Liu, Alasdair D.J. Freeman, Anne-Cécile Déclais, Timothy J. Wilson, Anton Gartner, David M. J. Lilley
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.03650

Mechanistic insight into the conserved allosteric regulation of periplasmic proteolysis by the signaling molecule cyclic-di-GMP
Cited by: 40
Author(s): Debashree Chatterjee, Richard B. Cooley, Chelsea D. Boyd, Ryan A. Mehl, George A. O’Toole, Holger Sondermann
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.08709

Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor
Cited by: 226
Author(s): Abbas Maqbool, Hiromasa Saitoh, Marina Franceschetti, Clare E. M. Stevenson, Aiko Uemura, Hiromitsu Kanzaki, Sophien Kamoun, Ryohei Terauchi, Mark J. Banfield
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.57659

Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
Cited by: 103
Author(s): George Ueda, Aleksandar Antanasijevic, Jorge A. Fallas, William Sheffler, Jeffrey Copps, Daniel Ellis, Geoffrey B. Hutchinson, Adam Moyer, Anila Yasmeen, Yaroslav Tsybovsky, Young-Jun Park, Matthew J. Bick, Banumathi Sankaran, Rebecca A. Gillespie, Philip J.M. Brouwer, Peter H. Zwart, David Veesler, Masaru Kanekiyo, Barney S. Graham, Rogier W. Sanders, John P. Moore, Per Johan Klasse, Andrew B. Ward, Neil P. King, David Baker
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.01345

Three-dimensional electron crystallography of protein microcrystals
Cited by: 323
Author(s): Dan Shi, Brent L. Nannenga, M.G. Iadanza, Tamir Gonen
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.08505

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex
Cited by: 55
Author(s): Byungchan Bae, James Chen, Elizabeth A. Davis, Katherine Leon, Seth A. Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.01340

Structure and function of the Smoothened extracellular domain in vertebrate Hedgehog signaling
Cited by: 144
Author(s): Sigrid Nachtergaele, Daniel M. Whalen, Laurel K. Mydock, Zhonghua Zhao, Tomas Malinauskas, Kathiresan Krishnan, Philip W. Ingham, Douglas F. Covey, Christian Siebold, Rajat Rohatgi
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.43676

Structural insights into SETD3-mediated histidine methylation on β-actin
Cited by: 37
Author(s): Qiong Guo, Shanhui Liao, Sebastian Kwiatkowski, Weronika Tomaka, Huijuan Yu, Gao Wu, Xiaoming Tu, Jinrong Min, Jakub Drożak, Chao Xu
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.28723

A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription
Cited by: 56
Author(s): Matthew A. Sdano, James Fulcher, Sowmiya Palani, Mahesh B. Chandrasekharan, Timothy J. Parnell, Frank G. Whitby, Tim Formosa, Christopher P. Hill
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.21347

Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA
Cited by: 43
Author(s): Lin Chen, Yibin Xu, Wilson Wong, J. K. Thompson, Julie Healer, Ethan D. Goddard‐Borger, Michael C. Lawrence, Alan F. Cowman
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.21516

Structural basis for the disaggregase activity and regulation of Hsp104
Cited by: 49
Author(s): Alexander Heuck, Sonja Schitter-Sollner, Marcin Suskiewicz, R Kurzbauer, Juliane Kley, Alexander Schleiffer, Pascaline Rombaut, Franz Herzog, Tim Clausen
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.58114

Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes
Cited by: 25
Author(s): Shuxin Liu, Jiwei Luo, Xiangkai Zhen, Jiazhang Qiu, Songying Ouyang, Zhao‐Qing Luo
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.46344

HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors
Cited by: 38
Author(s): Pratibha C. Koneru, Ashwanth C. Francis, Nanjie Deng, Stephanie V Rebensburg, Ashley C Hoyte, Jared Lindenberger, Daniel Adu‐Ampratwum, Ross C. Larue, Michael F. Wempe, Alan Engelman, Dmitry Lyumkis, James R. Fuchs, Ronald M. Levy, Gregory B. Melikyan, Mamuka Kvaratskhelia
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.48792

Molecular mechanism of TRPV2 channel modulation by cannabidiol
Cited by: 96
Author(s): Ruth A. Pumroy, Amrita Samanta, Yuhang Liu, Taylor Hughes, Siyuan Zhao, Yevgen Yudin, Tibor Rohács, Seungil Han, Vera Y. Moiseenkova-Bell
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.13662

Structural mechanism of ligand activation in human calcium-sensing receptor
Cited by: 179
Author(s): Yong Geng, Lidia Mosyak, Igor Kurinov, Hao Zuo, Emmanuel Sturchler, Tianfan Cheng, Prakash Subramanyam, Alice P Brown, Sarah C. Brennan, Hee-Chang Mun, Martin Bush, Yan Chen, Trang X Nguyen, Bin Cao, Donald D. Chang, Matthias Quick, Arthur D. Conigrave, Henry M. Colecraft, Patricia McDonald, Qing Fan
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.08504

Structure of a bacterial RNA polymerase holoenzyme open promoter complex
Cited by: 185
Author(s): Byungchan Bae, Andrey Feklístov, Agnieszka Lass-Napiorkowska, Robert Landick, Seth A. Darst
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.28619

Structural basis of host recognition and biofilm formation by Salmonella Saf pili
Cited by: 20
Author(s): Longhui Zeng, Li Zhang, Pengran Wang, Guoyu Meng
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.39979

BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands
Cited by: 32
Author(s): Matthew Day, Mathieu Rappas, Katie Ptasińska, Dominik Boos, Antony W. Oliver, Laurence H. Pearl
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.59407

Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter
Cited by: 26
Author(s): Julia Steiner, L.A. Sazanov
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.36615

Electron cryo-microscopy structure of the canonical TRPC4 ion channel
Cited by: 83
Author(s): Deivanayagabarathy Vinayagam, Thomas Mager, Amir Apelbaum, Arne Bothe, Felipe Merino, Oliver Hofnagel, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.49110

Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
Cited by: 40
Author(s): Gavin J. Knott, Brady F. Cress, Jun Jie Liu, Brittney W. Thornton, Rachel J. Lew, Basem Al-Shayeb, Daniel Rosenberg, Michal Hammel, Benjamin A. Adler, Marco Lobba, Michael Xu, Adam P. Arkin, Christof Fellmann, Jennifer A. Doudna
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.20383

Structure of the malaria vaccine candidate antigen CyRPA and its complex with a parasite invasion inhibitory antibody
Cited by: 46
Author(s): Paola Favuzza, Elena Guffart, Marco Tamborrini, Bianca Scherer, Anita M. Dreyer, Arne C. Rufer, Johannes Erny, Joerg Hoernschemeyer, Ralf Thoma, Georg Schmid, Bernard Gsell, Araceli Lamelas, J. Benz, Catherine Joseph, Hugues Matile, Gerd Pluschke, M.G. Rudolph
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.43584

Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer’s and Pick’s diseases
Cited by: 270
Author(s): W Zhang, Benjamin Falcon, Alexey G. Murzin, Jiaqin Fan, R. Anthony Crowther, Michel Goedert, Sjors H.W. Scheres
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.31473

Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids
Cited by: 74
Author(s): Christopher John Schlicksup, Joseph Che Yen Wang, Samson Francis, Balasubramanian Venkatakrishnan, William W. Turner, Michael S. VanNieuwenhze, Adam Zlotnick
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.50155

Structural model for differential cap maturation at growing microtubule ends
Cited by: 42
Author(s): Juan Estévez-Gallego, Fernando Josa-Prado, Siou Ku, Rubén M. Buey, Francisco A Balaguer, A.E. Prota, Daniel Lucena‐Agell, Christina S. Kamma-Lorger, Toshiki Yagi, Hiroyuki Iwamoto, Laurence Duchesne, Isabel Barasoaín, Michel O. Steinmetz, Denis Chrétien, Shinji Kamimura, J. Fernando Díaz, M.A. Oliva
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.59038

Molecular principles of assembly, activation, and inhibition in epithelial sodium channel
Cited by: 33
Author(s): Sigrid Noreng, Richard Posert, Arpita Bharadwaj, Alexandra Houser, Isabelle Baconguis
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.56427

Chemical and structural investigation of the paroxetine-human serotonin transporter complex
Cited by: 46
Author(s): Jonathan A. Coleman, Vikas Navratna, Daniele Antermite, Dongxue Yang, James A. Bull, Eric Gouaux
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.17063

Crystal structure of an HIV assembly and maturation switch
Cited by: 119
Author(s): Jonathan M. Wagner, Kaneil K. Zadrozny, Jakub Chrustowicz, Michael D. Purdy, Mark Yeager, Barbie K. Ganser‐Pornillos, Owen Pornillos
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.03275

Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks
Cited by: 73
Author(s): Suwen Zhao, A. Sakai, Xinshuai Zhang, M.W. Vetting, Ritesh Kumar, B. Hillerich, Brian San Francisco, José O. Solbiati, Adam Steves, Shoshana D. Brown, Eyal Akiva, Alan E. Barber, R.D. Seidel, Patricia C. Babbitt, Steven C. Almo, J.A. Gerlt, Matthew P. Jacobson
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.59530

Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex
Cited by: 35
Author(s): C.L. Durie, M.J. Sheedlo, Jeong Min Chung, Brenda Byrne, Min Su, Thomas J. Knight, Michele S. Swanson, D. Borden Lacy, Melanie D. Ohi
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52337

A dynamic interaction between CD19 and the tetraspanin CD81 controls B cell co-receptor trafficking
Cited by: 35
Author(s): Katherine J. Susa, T.C.M. Seegar, Stephen C. Blacklow, Andrew C. Kruse
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.03600

Structure of catalase determined by MicroED
Cited by: 110
Author(s): Brent L. Nannenga, Dan Shi, Johan Hattne, F.E. Reyes, Tamir Gonen
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.17523

Coordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes
Cited by: 50
Author(s): Olena Pylypenko, Tobias Welz, Janine Tittel, Martin Kollmar, Florian Chardon, Gilles Malherbe, Sabine Weiß, Carina Ida Luise Michel, Annette Samol-Wolf, Andreas T. Grasskamp, Alistair N. Hume, Bruno Goud, Bruno Baron, Patrick England, Margaret A. Titus, Petra Schwille, Thomas Weidemann, Anne Houdusse, Eugen Kerkhoff
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.24905

An allosteric transport mechanism for the AcrAB-TolC multidrug efflux pump
Cited by: 168
Author(s): Zhao Wang, Guizhen Fan, Corey F. Hryc, James N. Blaza, Irina I. Serysheva, Michael F. Schmid, Wah Chiu, B.F. Luisi, Dijun Du
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.12256

Human Holliday junction resolvase GEN1 uses a chromodomain for efficient DNA recognition and cleavage
Cited by: 26
Author(s): Shun-Hsiao Lee, Lissa Nicola Princz, Maren Klügel, Bianca Habermann, Boris Pfander, C. Biertumpfel
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.61446

The flagellar motor of Vibrio alginolyticus undergoes major structural remodeling during rotational switching
Cited by: 41
Author(s): Brittany L. Carroll, Tatsuro Nishikino, Wangbiao Guo, S. J. Zhu, Seiji Kojima, Michio Homma, Jun Li
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.30244

Structure-based nuclear import mechanism of histones H3 and H4 mediated by Kap123
Cited by: 18
Author(s): Soon Il An, Jung Min Yoon, Hanseong Kim, Ji-Joon Song, Uhn‐Soo Cho
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.43075

High resolution cryo-EM structure of the helical RNA-bound Hantaan virus nucleocapsid reveals its assembly mechanisms
Cited by: 26
Author(s): Benoît Arragain, Juan Reguera, Ambroise Desfosses, Irina Gutsche, Guy Schoehn, Hélène Malet
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.20832

The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription
Cited by: 58
Author(s): Eva Torreira, Jaime Alegrio Louro, Irene Pazos, Noelia González-Polo, David Gil, Ana G. Duran, Sébastien Tosi, Oriol Gallego, Olga Calvo, Carlos Fernández‐Tornero
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.24146

La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs
Cited by: 129
Author(s): Roni M. Lahr, Bruno D. Fonseca, Gabrielle E. Ciotti, Hiba A. Al-Ashtal, Jian Jun Jia, Marius Niklaus, Sarah P. Blagden, Tommy Alain, Andrea J. Berman
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.69800

Cryo-EM structures of the caspase-activated protein XKR9 involved in apoptotic lipid scrambling
Cited by: 21
Author(s): Monique S Straub, Carolina Alvadia, Marta Sawicka, Raimund Dutzler
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.41215

CryoEM structures of open dimers of gyrase A in complex with DNA illuminate mechanism of strand passage
Cited by: 23
Author(s): Katarzyna M Soczek, Tim Grant, Peter B. Rosenthal, Alfonso Mondragón
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.23961

Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals
Cited by: 61
Author(s): Ho Yee Joyce Fung, Szu Chin Fu, Yuh Min Chook
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.39340

Structure of the human epithelial sodium channel by cryo-electron microscopy
Cited by: 128
Author(s): Sigrid Noreng, Arpita Bharadwaj, Richard Posert, Craig Yoshioka, Isabelle Baconguis
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.07367

TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching
Cited by: 133
Author(s): Qiaozhen Ye, Scott Rosenberg, Arne Moeller, Jeffrey A. Speir, Tiffany Y Su, K.D. Corbett
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.53910

Structure of the human BBSome core complex
Cited by: 53
Author(s): B.U. Klink, Christos Gatsogiannis, Oliver Hofnagel, Alfred Wittinghofer, Stefan Raunser
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.36349

The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand
Cited by: 40
Author(s): Philipp K Zuber, Irina Artsimovitch, Monali NandyMazumdar, Zhaokun Liu, Yuri A. Nedialkov, Kristian Schweimer, Paul Rösch, Stefan H. Knauer
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.07888

STIL binding to Polo-box 3 of PLK4 regulates centriole duplication
Cited by: 106
Author(s): Christian Arquint, Anna-Maria Gabryjonczyk, Stefan Imseng, Raphael Böhm, Evelyn Sauer, Sebastian Hiller, Erich A. Nigg, Timm Maier
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.22567

Mechanistic insights into neurotransmitter release and presynaptic plasticity from the crystal structure of Munc13-1 C1C2BMUN
Cited by: 98
Author(s): Junjie Xu, Marcial Camacho, Yibin Xu, Vicotoria Esser, Xiaoxia Liu, Thorsten Trimbuch, Yun-Zu Pan, Cong Ma, Diana R. Tomchick, Christian Rosenmund, Josep Rizo
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.57491

Molecular basis for N-terminal alpha-synuclein acetylation by human NatB
Cited by: 20
Author(s): Sunbin Deng, Buyan Pan, Leah Gottlieb, E. James Petersson, Ronen Marmorstein
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.20621

Malaria parasite CelTOS targets the inner leaflet of cell membranes for pore-dependent disruption
Cited by: 46
Author(s): John R. Jimah, Nichole D. Salinas, Monica Sala-Rabanal, Nathaniel G. Jones, L. David Sibley, Colin G. Nichols, Paul H. Schlesinger, Niraj H. Tolia
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.37291

Kinetic mechanism of coupled binding in sodium-aspartate symporter GltPh
Cited by: 33
Author(s): SeCheol Oh, Olga Boudker
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.57096

Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1
Cited by: 25
Author(s): Degang Sun, Sanling Liu, Siyu Li, Mengge Zhang, Fan Yang, Ming Wen, Peng Shi, Tao Wang, Man Pan, Shenghai Chang, Xing Zhang, Longhua Zhang, Changlin Tian, Lei Liu
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52343

Casein kinase 1 dynamics underlie substrate selectivity and the PER2 circadian phosphoswitch
Cited by: 47
Author(s): Jonathan M. Philpott, Rajesh Narasimamurthy, Clarisse Gravina Ricci, Alfred M. Freeberg, Sabrina R. Hunt, Lauren E. Yee, Rebecca S. Pelofsky, Sarvind Tripathi, David M. Virshup, Carrie L. Partch
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.16309

Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5α
Cited by: 77
Author(s): Jonathan M. Wagner, Marcin D. Roganowicz, Katarzyna Skorupka, Steven L. Alam, Devin E. Christensen, Ginna Doss, Yuqing Wan, Gabriel A. Frank, Barbie K. Ganser‐Pornillos, Wesley I. Sundquist, Owen Pornillos
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.25541

Epistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1
Cited by: 30
Author(s): J.M. Jenson, Jeremy Ryan, Robert A. Grant, Anthony Letaï, Amy E. Keating
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.38922

Structural basis of tubulin recruitment and assembly by microtubule polymerases with tumor overexpressed gene (TOG) domain arrays
Cited by: 31
Author(s): Stanley Nithianantham, B. Cook, Madeleine Beans, Fei Guo, Fred Chang, Jawdat Al-Bassam
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.68578

Structural insights into the activation of human calcium-sensing receptor
Cited by: 16
Author(s): Xiaochen Chen, Lu Wang, Qianqian Cui, Zhanyu Ding, Han Liang, Yongjun Kou, Wenqing Zhang, Haonan Wang, Xiaomin Jia, Mingzhi Dai, Zhenzhong Shi, Yuying Li, Xiyang Li, Yong Geng
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.61189

Functional implications of MIR domains in protein O-mannosylation
Cited by: 2
Author(s): Antonella Chiapparino, Antonija Grbavac, Hendrik R. A. Jonker, Yvonne Hackmann, Sofia Mortensen, Ewa Zatorska, Andrea Schott, Günter Stier, Krishna Saxena, Klemens Wild, Harald Schwalbe, Sabine Strahl, Irmgard Sinning
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.56178

Nucleosome-CHD4 chromatin remodeler structure maps human disease mutations
Cited by: 45
Author(s): Lucas Farnung, Moritz Ochmann, Patrick Cramer
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.18449

Antiparallel protocadherin homodimers use distinct affinity- and specificity-mediating regions in cadherin repeats 1-4
Cited by: 50
Author(s): John M. Nicoludis, Bennett E Vogt, Anna G. Green, Charlotta Schärfe, Debora S. Marks, Rachelle Gaudet
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.58622

The dynamic nature of the human origin recognition complex revealed through five cryoEM structures
Cited by: 19
Author(s): Matt J. Jaremko, Kin Fan On, Dennis R. Thomas, Bruce Stillman, Leemor Joshua‐Tor
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.55517

Cryo-EM structure in situ reveals a molecular switch that safeguards virus against genome loss
Cited by: 20
Author(s): Oliver W. Bayfield, Alasdair C. Steven, A.A. Antson
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms131114326

Molecular Mechanisms of Pharmaceutical Drug Binding into Calsequestrin
Cited by: 8
Author(s): Arun K Subra, Mark S. Nissen, K.M. Lewis, Ashwin K Muralidharan, E.J. Sanchez, Hendrik Milting, Chulho Kang
Software Mentions: 1
Published: almost 14 years ago

Projects: cran: PHENIX

Science Score: 75/100

Penalties:

Papers Mentioning PHENIX 2,287