cran: PHENIX | Projects | Ecosyste.ms: Papers

10.7554/eLife.11860

Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence
Cited by: 76
Author(s): Udo Heintz, Ilme Schlichting
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.47405

Ctf4 organizes sister replisomes and Pol α into a replication factory
Cited by: 41
Author(s): Ziming Yuan, Roxana E. Georgescu, Ruda de Luna Almeida Santos, Dongke Zhang, Lin Bai, Nina Y. Yao, Gongpu Zhao, Mike O'Donnell, Huilin Li
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.44760

Structural basis of phosphatidylcholine recognition by the C2–domain of cytosolic phospholipase A2α
Cited by: 26
Author(s): Yoshinori Hirano, Yong-Guang Gao, Daniel J. Stephenson, Ngoc Vu, Lucy Malinina, Dhirendra K. Simanshu, Charles E. Chalfant, Dinshaw J. Patel, Rhoderick E. Brown
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.09066

Structural basis of interprotein electron transfer in bacterial sulfite oxidation
Cited by: 17
Author(s): Aaron P. McGrath, Elise M Laming, Gema Alejandra Botana García, Marc Kvansakul, J.M. Guss, Jill Trewhella, Benoît Calmes, Paul V. Bernhardt, Graeme R. Hanson, Ulrike Kappler, M.J. Maher
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.56664

Atomic structure of a mitochondrial complex I intermediate from vascular plants
Cited by: 43
Author(s): María Maldonado, Abhilash Padavannil, Long Zhou, Fei Guo, James A. Letts
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.11911

Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome
Cited by: 30
Author(s): Qianglin Fang, Ping Chen, Mingzhu Wang, Junshun Fang, Na Yang, Guohong Li, Rui-Ming Xu
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.33067

Crystal structure of intraflagellar transport protein 80 reveals a homo-dimer required for ciliogenesis
Cited by: 30
Author(s): Michael Täschner, Anna Lorentzen, André Mourão, Toby Collins, Grace Freke, Dale Moulding, J. Basquin, Dagan Jenkins, Esben Lorentzen
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.37774

Crystal structure of the full Swi2/Snf2 remodeler Mot1 in the resting state
Cited by: 3
Author(s): A. Butryn, Stephan Woike, Savera J. Shetty, David T. Auble, Karl‐Peter Hopfner
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.43542

Automated cryo-EM structure refinement using correlation-driven molecular dynamics
Cited by: 77
Author(s): Maxim Igaev, Carsten Kutzner, Lars V. Bock, Andrea C. Vaiana, Helmut Grubmüller
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.03650

Mechanistic insight into the conserved allosteric regulation of periplasmic proteolysis by the signaling molecule cyclic-di-GMP
Cited by: 40
Author(s): Debashree Chatterjee, Richard B. Cooley, Chelsea D. Boyd, Ryan A. Mehl, George A. O’Toole, Holger Sondermann
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.08709

Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor
Cited by: 226
Author(s): Abbas Maqbool, Hiromasa Saitoh, Marina Franceschetti, Clare E. M. Stevenson, Aiko Uemura, Hiromitsu Kanzaki, Sophien Kamoun, Ryohei Terauchi, Mark J. Banfield
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.57659

Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens
Cited by: 103
Author(s): George Ueda, Aleksandar Antanasijevic, Jorge A. Fallas, William Sheffler, Jeffrey Copps, Daniel Ellis, Geoffrey B. Hutchinson, Adam Moyer, Anila Yasmeen, Yaroslav Tsybovsky, Young-Jun Park, Matthew J. Bick, Banumathi Sankaran, Rebecca A. Gillespie, Philip J.M. Brouwer, Peter H. Zwart, David Veesler, Masaru Kanekiyo, Barney S. Graham, Rogier W. Sanders, John P. Moore, Per Johan Klasse, Andrew B. Ward, Neil P. King, David Baker
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.01345

Three-dimensional electron crystallography of protein microcrystals
Cited by: 323
Author(s): Dan Shi, Brent L. Nannenga, M.G. Iadanza, Tamir Gonen
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.08505

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex
Cited by: 55
Author(s): Byungchan Bae, James Chen, Elizabeth A. Davis, Katherine Leon, Seth A. Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.01340

Structure and function of the Smoothened extracellular domain in vertebrate Hedgehog signaling
Cited by: 144
Author(s): Sigrid Nachtergaele, Daniel M. Whalen, Laurel K. Mydock, Zhonghua Zhao, Tomas Malinauskas, Kathiresan Krishnan, Philip W. Ingham, Douglas F. Covey, Christian Siebold, Rajat Rohatgi
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.43676

Structural insights into SETD3-mediated histidine methylation on β-actin
Cited by: 37
Author(s): Qiong Guo, Shanhui Liao, Sebastian Kwiatkowski, Weronika Tomaka, Huijuan Yu, Gao Wu, Xiaoming Tu, Jinrong Min, Jakub Drożak, Chao Xu
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.28723

A novel SH2 recognition mechanism recruits Spt6 to the doubly phosphorylated RNA polymerase II linker at sites of transcription
Cited by: 56
Author(s): Matthew A. Sdano, James Fulcher, Sowmiya Palani, Mahesh B. Chandrasekharan, Timothy J. Parnell, Frank G. Whitby, Tim Formosa, Christopher P. Hill
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.21347

Structural basis for inhibition of erythrocyte invasion by antibodies to Plasmodium falciparum protein CyRPA
Cited by: 43
Author(s): Lin Chen, Yibin Xu, Wilson Wong, J. K. Thompson, Julie Healer, Ethan D. Goddard‐Borger, Michael C. Lawrence, Alan F. Cowman
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.21516

Structural basis for the disaggregase activity and regulation of Hsp104
Cited by: 49
Author(s): Alexander Heuck, Sonja Schitter-Sollner, Marcin Suskiewicz, R Kurzbauer, Juliane Kley, Alexander Schleiffer, Pascaline Rombaut, Franz Herzog, Tim Clausen
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.58114

Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes
Cited by: 25
Author(s): Shuxin Liu, Jiwei Luo, Xiangkai Zhen, Jiazhang Qiu, Songying Ouyang, Zhao‐Qing Luo
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.46344

HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors
Cited by: 38
Author(s): Pratibha C. Koneru, Ashwanth C. Francis, Nanjie Deng, Stephanie V Rebensburg, Ashley C Hoyte, Jared Lindenberger, Daniel Adu‐Ampratwum, Ross C. Larue, Michael F. Wempe, Alan Engelman, Dmitry Lyumkis, James R. Fuchs, Ronald M. Levy, Gregory B. Melikyan, Mamuka Kvaratskhelia
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.48792

Molecular mechanism of TRPV2 channel modulation by cannabidiol
Cited by: 96
Author(s): Ruth A. Pumroy, Amrita Samanta, Yuhang Liu, Taylor Hughes, Siyuan Zhao, Yevgen Yudin, Tibor Rohács, Seungil Han, Vera Y. Moiseenkova-Bell
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.13662

Structural mechanism of ligand activation in human calcium-sensing receptor
Cited by: 179
Author(s): Yong Geng, Lidia Mosyak, Igor Kurinov, Hao Zuo, Emmanuel Sturchler, Tianfan Cheng, Prakash Subramanyam, Alice P Brown, Sarah C. Brennan, Hee-Chang Mun, Martin Bush, Yan Chen, Trang X Nguyen, Bin Cao, Donald D. Chang, Matthias Quick, Arthur D. Conigrave, Henry M. Colecraft, Patricia McDonald, Qing Fan
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.08504

Structure of a bacterial RNA polymerase holoenzyme open promoter complex
Cited by: 185
Author(s): Byungchan Bae, Andrey Feklístov, Agnieszka Lass-Napiorkowska, Robert Landick, Seth A. Darst
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.28619

Structural basis of host recognition and biofilm formation by Salmonella Saf pili
Cited by: 20
Author(s): Longhui Zeng, Li Zhang, Pengran Wang, Guoyu Meng
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.39979

BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands
Cited by: 32
Author(s): Matthew Day, Mathieu Rappas, Katie Ptasińska, Dominik Boos, Antony W. Oliver, Laurence H. Pearl
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.59407

Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter
Cited by: 26
Author(s): Julia Steiner, L.A. Sazanov
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.36615

Electron cryo-microscopy structure of the canonical TRPC4 ion channel
Cited by: 83
Author(s): Deivanayagabarathy Vinayagam, Thomas Mager, Amir Apelbaum, Arne Bothe, Felipe Merino, Oliver Hofnagel, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.49110

Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a
Cited by: 40
Author(s): Gavin J. Knott, Brady F. Cress, Jun Jie Liu, Brittney W. Thornton, Rachel J. Lew, Basem Al-Shayeb, Daniel Rosenberg, Michal Hammel, Benjamin A. Adler, Marco Lobba, Michael Xu, Adam P. Arkin, Christof Fellmann, Jennifer A. Doudna
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.20383

Structure of the malaria vaccine candidate antigen CyRPA and its complex with a parasite invasion inhibitory antibody
Cited by: 46
Author(s): Paola Favuzza, Elena Guffart, Marco Tamborrini, Bianca Scherer, Anita M. Dreyer, Arne C. Rufer, Johannes Erny, Joerg Hoernschemeyer, Ralf Thoma, Georg Schmid, Bernard Gsell, Araceli Lamelas, J. Benz, Catherine Joseph, Hugues Matile, Gerd Pluschke, M.G. Rudolph
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.43584

Heparin-induced tau filaments are polymorphic and differ from those in Alzheimer’s and Pick’s diseases
Cited by: 270
Author(s): W Zhang, Benjamin Falcon, Alexey G. Murzin, Jiaqin Fan, R. Anthony Crowther, Michel Goedert, Sjors H.W. Scheres
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.31473

Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids
Cited by: 74
Author(s): Christopher John Schlicksup, Joseph Che Yen Wang, Samson Francis, Balasubramanian Venkatakrishnan, William W. Turner, Michael S. VanNieuwenhze, Adam Zlotnick
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.50155

Structural model for differential cap maturation at growing microtubule ends
Cited by: 42
Author(s): Juan Estévez-Gallego, Fernando Josa-Prado, Siou Ku, Rubén M. Buey, Francisco A Balaguer, A.E. Prota, Daniel Lucena‐Agell, Christina S. Kamma-Lorger, Toshiki Yagi, Hiroyuki Iwamoto, Laurence Duchesne, Isabel Barasoaín, Michel O. Steinmetz, Denis Chrétien, Shinji Kamimura, J. Fernando Díaz, M.A. Oliva
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.59038

Molecular principles of assembly, activation, and inhibition in epithelial sodium channel
Cited by: 33
Author(s): Sigrid Noreng, Richard Posert, Arpita Bharadwaj, Alexandra Houser, Isabelle Baconguis
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.56427

Chemical and structural investigation of the paroxetine-human serotonin transporter complex
Cited by: 46
Author(s): Jonathan A. Coleman, Vikas Navratna, Daniele Antermite, Dongxue Yang, James A. Bull, Eric Gouaux
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.17063

Crystal structure of an HIV assembly and maturation switch
Cited by: 119
Author(s): Jonathan M. Wagner, Kaneil K. Zadrozny, Jakub Chrustowicz, Michael D. Purdy, Mark Yeager, Barbie K. Ganser‐Pornillos, Owen Pornillos
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.03275

Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks
Cited by: 73
Author(s): Suwen Zhao, A. Sakai, Xinshuai Zhang, M.W. Vetting, Ritesh Kumar, B. Hillerich, Brian San Francisco, José O. Solbiati, Adam Steves, Shoshana D. Brown, Eyal Akiva, Alan E. Barber, R.D. Seidel, Patricia C. Babbitt, Steven C. Almo, J.A. Gerlt, Matthew P. Jacobson
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.59530

Structural analysis of the Legionella pneumophila Dot/Icm type IV secretion system core complex
Cited by: 35
Author(s): C.L. Durie, M.J. Sheedlo, Jeong Min Chung, Brenda Byrne, Min Su, Thomas J. Knight, Michele S. Swanson, D. Borden Lacy, Melanie D. Ohi
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52337

A dynamic interaction between CD19 and the tetraspanin CD81 controls B cell co-receptor trafficking
Cited by: 35
Author(s): Katherine J. Susa, T.C.M. Seegar, Stephen C. Blacklow, Andrew C. Kruse
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.03600

Structure of catalase determined by MicroED
Cited by: 110
Author(s): Brent L. Nannenga, Dan Shi, Johan Hattne, F.E. Reyes, Tamir Gonen
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.17523

Coordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes
Cited by: 50
Author(s): Olena Pylypenko, Tobias Welz, Janine Tittel, Martin Kollmar, Florian Chardon, Gilles Malherbe, Sabine Weiß, Carina Ida Luise Michel, Annette Samol-Wolf, Andreas T. Grasskamp, Alistair N. Hume, Bruno Goud, Bruno Baron, Patrick England, Margaret A. Titus, Petra Schwille, Thomas Weidemann, Anne Houdusse, Eugen Kerkhoff
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.24905

An allosteric transport mechanism for the AcrAB-TolC multidrug efflux pump
Cited by: 168
Author(s): Zhao Wang, Guizhen Fan, Corey F. Hryc, James N. Blaza, Irina I. Serysheva, Michael F. Schmid, Wah Chiu, B.F. Luisi, Dijun Du
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.12256

Human Holliday junction resolvase GEN1 uses a chromodomain for efficient DNA recognition and cleavage
Cited by: 26
Author(s): Shun-Hsiao Lee, Lissa Nicola Princz, Maren Klügel, Bianca Habermann, Boris Pfander, C. Biertumpfel
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.61446

The flagellar motor of Vibrio alginolyticus undergoes major structural remodeling during rotational switching
Cited by: 41
Author(s): Brittany L. Carroll, Tatsuro Nishikino, Wangbiao Guo, S. J. Zhu, Seiji Kojima, Michio Homma, Jun Li
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.30244

Structure-based nuclear import mechanism of histones H3 and H4 mediated by Kap123
Cited by: 18
Author(s): Soon Il An, Jung Min Yoon, Hanseong Kim, Ji-Joon Song, Uhn‐Soo Cho
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.43075

High resolution cryo-EM structure of the helical RNA-bound Hantaan virus nucleocapsid reveals its assembly mechanisms
Cited by: 26
Author(s): Benoît Arragain, Juan Reguera, Ambroise Desfosses, Irina Gutsche, Guy Schoehn, Hélène Malet
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.20832

The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription
Cited by: 58
Author(s): Eva Torreira, Jaime Alegrio Louro, Irene Pazos, Noelia González-Polo, David Gil, Ana G. Duran, Sébastien Tosi, Oriol Gallego, Olga Calvo, Carlos Fernández‐Tornero
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.24146

La-related protein 1 (LARP1) binds the mRNA cap, blocking eIF4F assembly on TOP mRNAs
Cited by: 129
Author(s): Roni M. Lahr, Bruno D. Fonseca, Gabrielle E. Ciotti, Hiba A. Al-Ashtal, Jian Jun Jia, Marius Niklaus, Sarah P. Blagden, Tommy Alain, Andrea J. Berman
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.69800

Cryo-EM structures of the caspase-activated protein XKR9 involved in apoptotic lipid scrambling
Cited by: 21
Author(s): Monique S Straub, Carolina Alvadia, Marta Sawicka, Raimund Dutzler
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.41215

CryoEM structures of open dimers of gyrase A in complex with DNA illuminate mechanism of strand passage
Cited by: 23
Author(s): Katarzyna M Soczek, Tim Grant, Peter B. Rosenthal, Alfonso Mondragón
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.23961

Nuclear export receptor CRM1 recognizes diverse conformations in nuclear export signals
Cited by: 61
Author(s): Ho Yee Joyce Fung, Szu Chin Fu, Yuh Min Chook
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.39340

Structure of the human epithelial sodium channel by cryo-electron microscopy
Cited by: 128
Author(s): Sigrid Noreng, Arpita Bharadwaj, Richard Posert, Craig Yoshioka, Isabelle Baconguis
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.07367

TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching
Cited by: 133
Author(s): Qiaozhen Ye, Scott Rosenberg, Arne Moeller, Jeffrey A. Speir, Tiffany Y Su, K.D. Corbett
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.53910

Structure of the human BBSome core complex
Cited by: 53
Author(s): B.U. Klink, Christos Gatsogiannis, Oliver Hofnagel, Alfred Wittinghofer, Stefan Raunser
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.36349

The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand
Cited by: 40
Author(s): Philipp K Zuber, Irina Artsimovitch, Monali NandyMazumdar, Zhaokun Liu, Yuri A. Nedialkov, Kristian Schweimer, Paul Rösch, Stefan H. Knauer
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.07888

STIL binding to Polo-box 3 of PLK4 regulates centriole duplication
Cited by: 106
Author(s): Christian Arquint, Anna-Maria Gabryjonczyk, Stefan Imseng, Raphael Böhm, Evelyn Sauer, Sebastian Hiller, Erich A. Nigg, Timm Maier
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.22567

Mechanistic insights into neurotransmitter release and presynaptic plasticity from the crystal structure of Munc13-1 C1C2BMUN
Cited by: 98
Author(s): Junjie Xu, Marcial Camacho, Yibin Xu, Vicotoria Esser, Xiaoxia Liu, Thorsten Trimbuch, Yun-Zu Pan, Cong Ma, Diana R. Tomchick, Christian Rosenmund, Josep Rizo
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.57491

Molecular basis for N-terminal alpha-synuclein acetylation by human NatB
Cited by: 20
Author(s): Sunbin Deng, Buyan Pan, Leah Gottlieb, E. James Petersson, Ronen Marmorstein
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.20621

Malaria parasite CelTOS targets the inner leaflet of cell membranes for pore-dependent disruption
Cited by: 46
Author(s): John R. Jimah, Nichole D. Salinas, Monica Sala-Rabanal, Nathaniel G. Jones, L. David Sibley, Colin G. Nichols, Paul H. Schlesinger, Niraj H. Tolia
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.37291

Kinetic mechanism of coupled binding in sodium-aspartate symporter GltPh
Cited by: 33
Author(s): SeCheol Oh, Olga Boudker
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.57096

Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1
Cited by: 25
Author(s): Degang Sun, Sanling Liu, Siyu Li, Mengge Zhang, Fan Yang, Ming Wen, Peng Shi, Tao Wang, Man Pan, Shenghai Chang, Xing Zhang, Longhua Zhang, Changlin Tian, Lei Liu
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.52343

Casein kinase 1 dynamics underlie substrate selectivity and the PER2 circadian phosphoswitch
Cited by: 47
Author(s): Jonathan M. Philpott, Rajesh Narasimamurthy, Clarisse Gravina Ricci, Alfred M. Freeberg, Sabrina R. Hunt, Lauren E. Yee, Rebecca S. Pelofsky, Sarvind Tripathi, David M. Virshup, Carrie L. Partch
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.16309

Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5α
Cited by: 77
Author(s): Jonathan M. Wagner, Marcin D. Roganowicz, Katarzyna Skorupka, Steven L. Alam, Devin E. Christensen, Ginna Doss, Yuqing Wan, Gabriel A. Frank, Barbie K. Ganser‐Pornillos, Wesley I. Sundquist, Owen Pornillos
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.25541

Epistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1
Cited by: 30
Author(s): J.M. Jenson, Jeremy Ryan, Robert A. Grant, Anthony Letaï, Amy E. Keating
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.38922

Structural basis of tubulin recruitment and assembly by microtubule polymerases with tumor overexpressed gene (TOG) domain arrays
Cited by: 31
Author(s): Stanley Nithianantham, B. Cook, Madeleine Beans, Fei Guo, Fred Chang, Jawdat Al-Bassam
Software Mentions: 1
Published: almost 8 years ago

10.1128/JVI.03586-14

Peptide-Dependent Recognition of HLA-B*57:01 by KIR3DS1
Cited by: 64
Author(s): Geraldine M. O’Connor, J.P. Vivian, Emma Gostick, Phillip Pymm, Bernard A. P. Lafont, David A. Price, Jamie Rossjohn, Andrëw G. Brööks, Daniel W. McVicar
Software Mentions: 1
Published: over 11 years ago

10.1021/acschembio.1c00411

OFF-State-Specific Inhibition of the Proprotein Convertase Furin
Cited by: 8
Author(s): S.O. Dahms, Tanja Haider, G. Klebe, Torsten Steinmetzer, Hans Brandstetter
Software Mentions: 1
Published: about 5 years ago

10.1155/2017/8940321

A Clinically Relevant Variant of the Human Hydrogen Sulfide-Synthesizing Enzyme Cystathionineβ-Synthase: Increased CO Reactivity as a Novel Molecular Mechanism of Pathogenicity?
Cited by: 15
Author(s): João B. Vicente, Henrique G. Colaço, Francesca Malagrinò, Paulo E. Santo, André Gutierres, Tiago M. Bandeiras, Paula Leandro, José A. Brito, Alessandro Giuffrè
Software Mentions: 1
Published: over 9 years ago

10.1107/S0108767311007008

Exact direct-space asymmetric units for the 230 crystallographic space groups
Cited by: 10
Author(s): Ralf W. Grosse‐Kunstleve, B. C. Wong, Marat Mustyakimov, Paul D. Adams
Software Mentions: 1
Published: over 15 years ago

10.1107/S2052520619002002

Accurate geometrical restraints for Watson–Crick base pairs
Cited by: 13
Author(s): Mirosław Gilski, Jianbo Zhao, Marcin Kowiel, Dariusz Brzeziński, Douglas H. Turner, Mariusz Jaskólski
Software Mentions: 1
Published: over 7 years ago

10.1107/S0907444912042369

High-resolution structures of AidH complexes provide insights into a novel catalytic mechanism forN-acyl homoserine lactonase
Cited by: 24
Author(s): Ang Gao, Gui Mei, Shun Liu, Ping Wang, Qun Tang, Yan Ping Liu, Hui Wen, Xiaohong An, Liqun Zhang, Xiao Xue Yan, Dong Liang
Software Mentions: 1
Published: over 13 years ago

10.1107/S1399004714005422

Structural characterization of the apo form and NADH binary complex of human lactate dehydrogenase
Cited by: 22
Author(s): Sally Dempster, Stephen Harper, John E. Moses, Ingrid Dreveny
Software Mentions: 1
Published: over 12 years ago

10.1107/S1399004713027806

The structures of the kinase domain and UBA domain of MPK38 suggest the activation mechanism for kinase activity
Cited by: 9
Author(s): Yong Soon Cho, Je Hyun Yoo, Sumin Park, Hyun Soo Cho
Software Mentions: 1
Published: over 12 years ago

10.1107/S0907444909011548

Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules
Cited by: 121
Author(s): Paul D. Adams, Marat Mustyakimov, Pavel V. Afonine, Paul Langan
Software Mentions: 1
Published: over 17 years ago

10.1107/S1399004714011183

BuD, a helix–loop–helix DNA-binding domain for genome modification
Cited by: 23
Author(s): Stefano Stella, Rafael Molina, Blanca López-Méndez, Alexandre Juillerat, Claudia Bertonati, Fayza Daboussi, Ramón Campos-Olivas, Phillippe Duchateau, Guillermo Montoya
Software Mentions: 1
Published: about 12 years ago

10.1107/S1399004715008548

Structure of protease-cleavedEscherichia coliα-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment
Cited by: 11
Author(s): Cameron David Fyfe, Rhys Grinter, Inokentijs Josts, Khédidja Mosbahi, A.W. Roszak, Richard J. Cogdell, Daniel M. Wall, Richard Burchmore, Olwyn Byron, Daniel Walker
Software Mentions: 1
Published: about 11 years ago

10.1107/S0907444908044296

Crystallographic model quality at a glance
Cited by: 92
Author(s): Ludmila Urzhumtseva, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 1
Published: over 17 years ago

10.1107/S0907444911050682

Structural features and kinetic characterization of alanine racemase fromStaphylococcus aureus(Mu50)
Cited by: 20
Author(s): Emma Rose Scaletti, Sylvia R. Luckner, Kurt L. Krause
Software Mentions: 1
Published: over 14 years ago

10.1107/S139900471401606X

Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease
Cited by: 10
Author(s): Chen Shao, Chengliang Wang, Jianye Zang
Software Mentions: 1
Published: almost 12 years ago

10.1107/S0907444913011426

Molecular replacement then and now
Cited by: 54
Author(s): Giovanna Scapin
Software Mentions: 1
Published: almost 13 years ago

10.1107/S0907444908040006

Model-building strategies for low-resolution X-ray crystallographic data
Cited by: 21
Author(s): Anjum M. Karmali, Tom L. Blundell, Nicholas Furnham
Software Mentions: 1
Published: over 17 years ago

10.1107/S1399004713030319

Likelihood-based molecular-replacement solution for a highly pathological crystal with tetartohedral twinning and sevenfold translational noncrystallographic symmetry
Cited by: 25
Author(s): Joanna Śliwiak, Mariusz Jaskólski, Zbigniew Dauter, Airlie J. McCoy, Randy J. Read
Software Mentions: 1
Published: over 12 years ago

10.1107/S0907444912049608

GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria
Cited by: 18
Author(s): K. Michalska, Kemin Tan, Hui Li, C. Hatzos-Skintges, J. Bearden, G. Babnigg, A. Joachimiak
Software Mentions: 1
Published: over 13 years ago

10.1107/S1399004715006616

3-Sulfinopropionyl-coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis DPN7T: crystal structure and function of a desulfinase with an acyl-CoA dehydrogenase fold
Cited by: 4
Author(s): Marc Schürmann, Rob Meijers, Thomas R. Schneider, Alexander Steinbüchel, Michele Cianci
Software Mentions: 1
Published: about 11 years ago

10.1107/S1399004714013856

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures
Cited by: 51
Author(s): Ryan McGreevy, Abhishek Singharoy, Qufei Li, Jingfen Zhang, Dong Xu, Eduardo Perozo, Klaus Schulten
Software Mentions: 1
Published: almost 12 years ago

10.1107/S0907444910031045

A smooth and differentiable bulk-solvent model for macromolecular diffraction
Cited by: 15
Author(s): Timothy D. Fenn, Michael J. Schnieders, Axel T. Brunger
Software Mentions: 1
Published: about 16 years ago

10.1107/S1399004714012917

Mapping the conformational space accessible to catechol-O-methyltransferase
Cited by: 30
Author(s): A. Ehler, Jörg Benz, Daniel Schlatter, M.G. Rudolph
Software Mentions: 1
Published: about 12 years ago

10.1107/S1399004714021099

Enzyme–adenylate structure of a bacterial ATP-dependent DNA ligase with a minimized DNA-binding surface
Cited by: 14
Author(s): Adele Kim Williamson, U. Rothweiler, Hanna‐Kirsti S. Leiros
Software Mentions: 1
Published: almost 12 years ago

10.1107/S1399004713034718

The structures of cytosolic and plastid-located glutamine synthetases fromMedicago truncatulareveal a common and dynamic architecture
Cited by: 21
Author(s): Eva Torreira, Ana R. Seabra, Helen M. Marriott, Min Zhou, Óscar Llorca, Carol V. Robinson, Helena Carvalho, Carlos Fernández‐Tornero, Pedro José Barbosa Pereira
Software Mentions: 1
Published: over 12 years ago

10.1107/S1399004713032112

Crystal structure and conformational flexibility of the unligated FK506-binding protein FKBP12.6
Cited by: 4
Author(s): Hui Chen, Sourajit M. Mustafi, David M. LeMaster, Zhong Li, A. Héroux, Hongmin Li, Griselda Hernández
Software Mentions: 1
Published: over 12 years ago

10.1107/S090744491300958X

Microcrystal manipulation with laser tweezers
Cited by: 16
Author(s): Armin Wagner, Ramona Duman, Bob Stevens, Andrew D. Ward
Software Mentions: 1
Published: about 13 years ago

10.1107/S1399004714025280

A national facility for biological cryo-electron microscopy
Cited by: 21
Author(s): Helen R. Saibil, Kay Grünewald, David I. Stuart
Software Mentions: 1
Published: over 11 years ago

10.1107/S0907444913008408

MAINsoftware for density averaging, model building, structure refinement and validation
Cited by: 82
Author(s): Dušan Turk
Software Mentions: 1
Published: about 13 years ago

10.1107/S0907444909039638

On the use of logarithmic scales for analysis of diffraction data
Cited by: 17
Author(s): Alexandre Urzhumtsev, Pavel V. Afonine, Paul D. Adams
Software Mentions: 1
Published: almost 17 years ago

10.1107/S0907444907046148

On macromolecular refinement at subatomic resolution with interatomic scatterers
Cited by: 56
Author(s): Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Paul D. Adams, Vladimir Y. Lunin, Alexandre Urzhumtsev
Software Mentions: 1
Published: almost 19 years ago

10.1107/S0907444913003260

Camel and bovine chymosin: the relationship between their structures and cheese-making properties
Cited by: 55
Author(s): Jesper Langholm Jensen, Anne Mølgaard, J.C. Navarro Poulsen, Marianne Harboe, Jens B. Simonsen, Andrea Lorentzen, Karin Hjernø, J.M. van den Brink, K.B. Qvist, Sine Larsen
Software Mentions: 1
Published: over 13 years ago

10.1107/S139900471400947X

Structural basis of the heterodimerization of the MST and RASSF SARAH domains in the Hippo signalling pathway
Cited by: 42
Author(s): Eunha Hwang, Hae‐Kap Cheong, Ameeq Ul Mushtaq, Hye Yeon Kim, Kwon Joo Yeo, Eun‐Hee Kim, Woo Cheol Lee, Kwang Yeon Hwang, Chaejoon Cheong, Young Ho Jeon
Software Mentions: 1
Published: about 12 years ago

10.1107/S1399004715015011

A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions
Cited by: 73
Author(s): Thomas D. Murray, A.Y. Lyubimov, Craig M. Ogata, Huy T. Vo, Monarin Uervirojnangkoorn, Axel T. Brunger, James M. Berger
Software Mentions: 1
Published: almost 11 years ago

10.1107/S1399004714016289

Metrics for comparison of crystallographic maps
Cited by: 28
Author(s): Alexandre Urzhumtsev, Pavel V. Afonine, Vladimir Y. Lunin, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 1
Published: almost 12 years ago

10.1107/S1399004713034603

Hitting the target: fragment screening with acousticin situco-crystallization of proteins plus fragment libraries on pin-mounted data-collection micromeshes
Cited by: 40
Author(s): Xingyu Yin, A. Scalia, Ludmila Leroy, Christina M. Cuttitta, G.M. Polizzo, Daniel L. Ericson, Christian G. Roessler, O. Campos, Y. Millie, Rashmi Agarwal, R. Jackimowicz, Marc Allaire, Allen M. Orville, Robert M. Sweet, Alexei S. Soares
Software Mentions: 1
Published: over 12 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287