cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1128/mBio.03162-20

Streptococcus pyogenes Is Associated with Idiopathic Cutaneous Ulcers in Children on a Yaws-Endemic Island
Cited by: 5
Author(s): Brad Griesenauer, Camila González-Beiras, Katherine R. Fortney, Huaiying Lin, Xiang Gao, Charmie Godornes, David E. Nelson, Barry P. Katz, Sheila A. Lukehart, Oriol Mitjà, Qunfeng Dong, Stanley M. Spinola
Software Mentions: 6
Published: over 3 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.4283

A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas
Cited by: 47
Author(s): Abigail Cahill, John K. Pearman, Ángel Borja, Laura Carugati, Susana Carvalho, Roberto Danovaro, Sarah Dashfield, Romain David, Jean‐Pierre Féral, Sergej Olenin, Andrius Šiaulys, Paul J. Somerfield, Antoaneta Trayanova, María C. Uyarra, Anne Chenuil
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2021.665849

Decisive Effects of Life Stage on the Gut Microbiota Discrepancy Between Two Wild Populations of Hibernating Asiatic Toads (Bufo gargarizans)
Cited by: 3
Author(s): Xuehang Song, Jingwei Zhang, Jinghan Song, Yuanyuan Zhai
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-92007-3

Validity and safety of ID-JPL934 in lower gastrointestinal symptom improvement
Cited by: 4
Author(s): Cheol Min Shin, Yoon Jin Choi, Dong Hoon Lee, Jin Seok Moon, Tae Yoon Kim, Yoon Keun Kim, Won Hee Lee, Hyuk Yoon, Young Soo Park, Nayoung Kim
Software Mentions: 6
Published: over 3 years ago

10.1128/mSphere.00843-20

Pseudomonas aeruginosa Volatilome Characteristics and Adaptations in Chronic Cystic Fibrosis Lung Infections
Cited by: 10
Author(s): Thomas J. Davis, Ava V. Karanjia, Charity N. Bhebhe, Sarah B. West, Matthew Richardson, Heather D. Bean
Software Mentions: 6
Published: about 4 years ago

10.1186/s40168-019-0639-0

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
Cited by: 61
Author(s): Rachael E. Antwis, Katie L. Edwards, Bryony Unwin, Susan L. Walker, Susanne Shultz
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-89950-6

Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts
Cited by: 15
Author(s): Ameli Kirse, Sarah J. Bourlat, Kathrin Langen, Vera G. Fonseca
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-89185-5

Cage and maternal effects on the bacterial communities of the murine gut
Cited by: 16
Author(s): Gurdeep Singh, Andy Brass, Sheena M. Cruickshank, Christopher G. Knight
Software Mentions: 6
Published: over 3 years ago

10.1111/1751-7915.13450

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas
Cited by: 47
Author(s): Huan Li, Rui Zhou, Jun Zhu, Xiaodan Huang, Jiapeng Qu
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87384-8

Field multi-omics analysis reveals a close association between bacterial communities and mineral properties in the soybean rhizosphere
Cited by: 11
Author(s): Shinichi Yamazaki, Hossein Mardani-Korrani, Rumi Kaida, Kumiko Ochiai, Masaru Kobayashi, Atsushi J. Nagano, Yoshiharu Fujii, Akifumi Sugiyama, Yosuke Aoki
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2019.00447

Leveraging Fecal Bacterial Survey Data to Predict Colorectal Tumors
Cited by: 11
Author(s): Bangzhou Zhang, Shuaimei Xu, Wei Xu, Qiongyun Chen, Zhangran Chen, Changsheng Yan, Yanyun Fan, Huangkai Zhang, Qi Liu, Jie Yang, Jinfeng Yang, Chuanxing Xiao, Hui Xu, Jianlin Ren
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87143-9

Stock delineation of striped snakehead, Channa striata using multivariate generalised linear models with otolith shape and chemistry data
Cited by: 3
Author(s): Sanaullah Khan, Hayden T. Schilling, Mohammad Afzal Khan, Devendra Kumar Patel, Ben Maslen, Kaish Miyan
Software Mentions: 6
Published: over 3 years ago

10.1128/mSphere.00455-21

A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
Cited by: 9
Author(s): Heather L. Deel, Alexandra L. Emmons, Jennifer Kiely, Franklin E. Damann, David Carter, Aaron M. Lynne, Rob Knight, Zhenjiang Xu, Sibyl R. Bucheli, Jessica L. Metcalf
Software Mentions: 6
Published: about 3 years ago

10.1186/s40168-019-0686-6

Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets
Cited by: 32
Author(s): Anukriti Sharma, Miles Richardson, Lauren Cralle, Christopher E. Stamper, Juan P. Maestre, Kelly A. Stearns‐Yoder, Teodor T. Postolache, Katherine L Bates, Kerry A. Kinney, Lisa A. Brenner, Christopher A. Lowry, Jack A. Gilbert, Andrew J. Hoisington
Software Mentions: 6
Published: over 5 years ago

10.1007/s00248-020-01656-w

Linking Bacterial Communities Associated with the Environment and the Ecosystem Engineer Orchestia gammarellus at Contrasting Salt Marsh Elevations
Cited by: 2
Author(s): Edisa García Hernández, Matty P. Berg, A. Raoul Van Oosten, Christian Smit, Joana Falcão Salles
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-85460-7

Early socialization and environmental enrichment of lactating piglets affects the caecal microbiota and metabolomic response after weaning
Cited by: 7
Author(s): Mireia Saladrigas-García, Matilde D’Angelo, Heng-Lun Ko, Sara Traserra, Pau Nolis, Yuliaxis Ramayo-Caldas, Josep María Folch, P. Vergara, Pol Llonch, José Francisco Pérez, S. M. Martín‐Orúe
Software Mentions: 6
Published: over 3 years ago

10.3390/biom10071041

Untargeted LC-MS Metabolomics Differentiates Between Virulent and Avirulent Clinical Strains of Pseudomonas aeruginosa
Cited by: 18
Author(s): Tobias Depke, Janne G. Thöming, Adrian Kordes, Susanne Häußler, Mark Brönstrup
Software Mentions: 6
Published: over 4 years ago

10.3389/fcimb.2021.643968

Gut Microbiome Alterations in Patients With Thyroid Nodules
Cited by: 15
Author(s): Ang Li, Tiantian Li, Xinxin Gao, Hang Yan, Jingfeng Chen, Mingjie Huang, Lin Wang, Dengke Yin, Hongqiang Li, Runsheng Ma, Qiang Zeng, Shuzhe Ding
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2019.02278

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria
Cited by: 4
Author(s): Philipp Baloh, Nora Els, Robert O. David, Catherine Larose, Karin Whitmore, Birgit Sattler, Hinrich Grothe
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-86100-w

Effectiveness of decontamination protocols when analyzing ancient DNA preserved in dental calculus
Cited by: 11
Author(s): Andrew G. Farrer, Sterling L. Wright, Emily Skelly, Raphael Eisenhofer, Keith Dobney, Laura S. Weyrich
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-92042-0

Socioeconomic position links circulatory microbiota differences with biological age
Cited by: 12
Author(s): Hannah Craven, Dagmara McGuinness, Sarah Buchanan, Norman Galbraith, David McGuinness, Brian Jones, Emilie Combet, Denise Mafra, Peter Bergman, Anne Ellaway, Peter Stenvinkel, Umer Zeeshan Ijaz, Paul G. Shiels
Software Mentions: 6
Published: over 3 years ago

10.1186/s42523-020-00057-1

Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics
Cited by: 12
Author(s): Amy M. Van Cise, Paul R. Wade, Caroline E. C. Goertz, Kathleen A. Burek‐Huntington, Kim M. Parsons, Tonya M. Clauss, Roderick C. Hobbs, Amy Apprill
Software Mentions: 6
Published: about 4 years ago

10.7717/peerj.6674

Epizootic ulcerative syndrome causes cutaneous dysbacteriosis in hybrid snakehead (Channa maculata♀ × Channa argus♂)
Cited by: 6
Author(s): Zhifei Li, Guangjun Wang, Kai Zhang, Wangbao Gong, Ermeng Yu, Jingjing Tian, Jun Xie, Deguang Yu
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.610009

Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease
Cited by: 28
Author(s): Citlalli A Aquino, Ryan M Besemer, Christopher M. DeRito, Jan Kocian, Ian Porter, Peter T. Raimondi, Jordan E Rede, Lauren M. Schiebelhut, Jed P. Sparks, John P. Wares, Ian Hewson
Software Mentions: 6
Published: almost 4 years ago

10.1186/s40168-021-01053-6

Towards enhancing coral heat tolerance: a “microbiome transplantation” treatment using inoculations of homogenized coral tissues
Cited by: 60
Author(s): Talisa Doering, Marlene Wall, Lalita Putchim, Tipwimon Rattanawongwan, Roman Schroeder, Ute Hentschel, Anna Krystyna Roik
Software Mentions: 6
Published: over 3 years ago

10.3389/fcimb.2021.646348

Dysbiosis and Implication of the Gut Microbiota in Diabetic Retinopathy
Cited by: 62
Author(s): Yinhua Huang, Zhijie Wang, Hongjie Ma, Shangli Ji, Zhongping Chen, Zekai Cui, Jiansu Chen, Shibo Tang
Software Mentions: 5
Published: over 3 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
Cited by: 64
Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0238557

eDNA metabarcoding as a biomonitoring tool for marine protected areas
Cited by: 67
Author(s): Zachary Gold, Joshua Sprague, David J. Kushner, Erick Zerecero Marin, Paul H. Barber
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2021.579766

Preterm Birth Is Correlated With Increased Oral Originated Microbiome in the Gut
Cited by: 14
Author(s): Yin Chen, Jingrui Chen, Xiaoyi Wu, Ye-Ling Liu, He Qian, Ying Cao, Yie Huang, Sisun Liu
Software Mentions: 5
Published: over 3 years ago

10.3390/life11030246

Postoperative Complications Are Associated with Long-Term Changes in the Gut Microbiota Following Colorectal Cancer Surgery
Cited by: 7
Author(s): Felix C. F. Schmitt, Martin Schneider, William Mathejczyk, Markus A. Weigand, Jane C. Figueiredo, Christopher I. Li, David Shibata, Erin M. Siegel, Adetunji T. Toriola, Cornelia M. Ulrich, Alexis Ulrich, Sébastien Boutin, Biljana Gigic
Software Mentions: 5
Published: over 3 years ago

10.3389/fcimb.2018.00301

Comparison of Fecal Collection Methods for Microbiome and Metabolomics Studies
Cited by: 105
Author(s): Zheng Wang, Christine P. Zolnik, Yunping Qiu, Mykhaylo Usyk, Tao Wang, Howard D. Strickler, Carmen R. Isasi, Robert C. Kaplan, Irwin J. Kurland, Qibin Qi, Robert D. Burk
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-82988-6

Insect reproductive behaviors are important mediators of carrion nutrient release into soil
Cited by: 2
Author(s): Brooke K. Woelber-Kastner, Serita D. Frey, Daniel R. Howard, Carrie L. Hall
Software Mentions: 5
Published: almost 4 years ago

10.7717/peerj.7014

Soil bacterial and fungal communities of six bahiagrass cultivars
Cited by: 10
Author(s): Lukas Beule, Ko‐Hsuan Chen, Chih‐Ming Hsu, Cheryl L. Mackowiak, José C. B. Dubeux, Ann R. Blount, Hui‐Ling Liao
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-80557-x

Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia)
Cited by: 33
Author(s): Esteban Góngora, Kyle H. Elliott, Lyle G. Whyte
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-021-07906-6

Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations
Cited by: 2
Author(s): Jennifer L. Morrow, Markus Riegler
Software Mentions: 5
Published: over 3 years ago

10.1186/s13068-016-0652-5

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion
Cited by: 56
Author(s): Jo De Vrieze, Leticia Regueiro, Ruben Props, Ramiro Vílchez-Vargas, Ruy Jáuregui, Dietmar H. Pieper, Juan M. Lema, Marta Carballa
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.9644

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters
Cited by: 26
Author(s): Giulia M. Marchioro, Bettina Glasl, Aschwin H. Engelen, Ester Á. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Software Mentions: 5
Published: over 4 years ago

10.3389/fcimb.2021.633242

Effects of Smoking on Inflammatory Markers in a Healthy Population as Analyzed via the Gut Microbiota
Cited by: 13
Author(s): Yan Su, Zhonghui Ma, Mengfan Jiao, Youxiang Wang, Ang Li, Shuzhe Ding
Software Mentions: 5
Published: over 3 years ago

10.3390/nu12082308

Plasma Metabolites Related to Peripheral and Hepatic Insulin Sensitivity Are Not Directly Linked to Gut Microbiota Composition
Cited by: 6
Author(s): Annefleur M. Koopen, Nicolien C. de Clercq, Moritz V. Warmbrunn, Hilde Herrema, Mark Davids, Pieter F. de Groot, Ruud S. Kootte, Kristien E. Bouter, Max Nieuwdorp, Albert K. Groen, Andrei Prodan
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2020.548618

Microbiome in Healthy Women Between Two Districts With Different Air Quality Index
Cited by: 8
Author(s): Yinhua Wu, Zujin Wang, Yu Zhang, Li-Ming Ruan, Ang Li, Xiaoyan Liu
Software Mentions: 5
Published: about 4 years ago

10.3390/foods9091247

Application of a High-Throughput Amplicon Sequencing Method to Chart the Bacterial Communities that Are Associated with European Fermented Meats from Different Origins
Cited by: 14
Author(s): Emiel Van Reckem, Christina Charmpi, David Van der Veken, Wim Borremans, Luc De Vuyst, Stefan Weckx, Frédéric Leroy
Software Mentions: 5
Published: about 4 years ago

10.3389/fbioe.2020.604838

Response of Microbial Community to Induced Failure of Anaerobic Digesters Through Overloading With Propionic Acid Followed by Process Recovery
Cited by: 15
Author(s): Azin Khafipour, Elsie M. Jordaan, Daniel Flores-Orozco, Ehsan Khafipour, David B. Levin, Richard Sparling
Software Mentions: 5
Published: almost 4 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.2454

Root exudate cocktails: the link between plant diversity and soil microorganisms?
Cited by: 154
Author(s): Katja Steinauer, Antonis Chatzinotas, Nico Eisenhauer
Software Mentions: 5
Published: about 8 years ago

10.1186/s40168-021-01056-3

Anna Karenina and the subgingival microbiome associated with periodontitis
Cited by: 15
Author(s): Khaled Altabtbaei, Pooja Maney, Sukirth M. Ganesan, Shareef M Dabdoub, Haikady N. Nagaraja, Purnima Kumar
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-59111-2

Relative roles of biological and physical processes influencing coral recruitment during the lag phase of reef community recovery
Cited by: 19
Author(s): Marine Gouezo, Dawnette Olsudong, Katharina Fabricius, Peter Lynton Harrison, Yimnang Golbuu, Christopher Doropoulos
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.5711

Site‐specific responses of foliar fungal microbiomes to nutrient addition and herbivory at different spatial scales
Cited by: 15
Author(s): Candice Y. Lumibao, Elizabeth T. Borer, Bradford Condon, Linda L. Kinkel, Georgiana May, Eric W. Seabloom
Software Mentions: 5
Published: about 5 years ago

10.1002/mbo3.1133

A low‐cost pipeline for soil microbiome profiling
Cited by: 5
Author(s): Anita Bollmann‐Giolai, Michael Giolai, Darren Heavens, Iain C. Macaulay, Jacob G. Malone, Matt Clark
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-020-57798-x

Impact of the early-life skin microbiota on the development of canine atopic dermatitis in a high-risk breed birth cohort
Cited by: 8
Author(s): Sabrina Rodriguez‐Campos, Ana Rostaher, Lena Zwickl, Nina Fischer, Isabelle Brodard, Sara Vidal, Bernd W. Brandt, Claude Favrot, Vincent Perreten
Software Mentions: 5
Published: almost 5 years ago

10.1111/mec.14581

Feather mites play a role in cleaning host feathers: New insights from <scp>DNA</scp> metabarcoding and microscopy
Cited by: 42
Author(s): Jorge Doña, H. C. Proctor, David Serrano, Kevin P. Johnson, Arnika Oddy van Oploo, José C. Huguet‐Tapia, Marina S. Ascunce, Roger Jovani
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-58576-5

Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration
Cited by: 49
Author(s): Obinna T. Ezeokoli, Cornelius Carlos Bezuidenhout, Mark Maboeta, Damase P. Khasa, Rasheed Adeleke
Software Mentions: 5
Published: almost 5 years ago

10.1111/mec.14779

How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
Cited by: 74
Author(s): Vanessa A. Mata, Hugo Rebelo, Francisco Amorim, Gary F. McCracken, Simon Jarman, Pedro Beja
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.3404

Pellets of proof: First glimpse of the dietary composition of adult odonates as revealed by metabarcoding of feces
Cited by: 62
Author(s): Kari Kaunisto, Tomas Roslin, Ilari E. Sääksjärvi, Eero J. Vesterinen
Software Mentions: 5
Published: about 7 years ago

10.1128/AEM.02969-19

Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil
Cited by: 12
Author(s): Yuan Zhang, Xiuli Hao, Adriana M. García-Lemos, Inês Nunes, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-83524-2

Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Cited by: 37
Author(s): Shashank Gupta, Malini Shariff, Gaura Chaturvedi, Arpit Sharma, Nitin Goel, Monika Yadav, Martin Steen Mortensen, Søren J. Sørensen, Mitali Mukerji, Nar Singh Chauhan
Software Mentions: 5
Published: almost 4 years ago

10.1093/bioinformatics/btw311

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances
Cited by: 94
Author(s): Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko
Software Mentions: 5
Published: over 8 years ago

10.1111/1755-0998.13013

Evaluating next‐generation sequencing (NGS) methods for routine monitoring of wild bees: Metabarcoding, mitogenomics or NGS barcoding
Cited by: 18
Author(s): Morgan Gueuning, Dominik Ganser, Simon Blaser, Matthias Albrecht, Eva Knop, Christophe Praz, Juerg E. Frey
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.7850

Floral attraction and flower visitors of a subcanopy, tropical rainforest tree, Fontainea picrosperma
Cited by: 2
Author(s): Elektra L. Grant, Helen M. Wallace, Peter Brooks, Chris J. Burwell, Paul Reddell, Steven M. Ogbourne
Software Mentions: 5
Published: over 3 years ago

10.1002/mbo3.681

Do composition and diversity of bacterial communities and abiotic conditions of spring water reflect characteristics of groundwater ecosystems exposed to different agricultural activities?
Cited by: 4
Author(s): Karsten Karczewski, Patricia Göbel, Elisabeth I. Meyer
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.02798

The Compositionally Distinct Cyanobacterial Biocrusts From Brazilian Savanna and Their Environmental Drivers of Community Diversity
Cited by: 22
Author(s): Nathali Machado de Lima, Vanessa Moreira Câmara Fernandes, Daniel Roush, Sergio Velasco Ayuso, Janaína Rigonato, Ferrán García-Pichel, Luis Henrique Zanini Branco
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.7602

Noninvasively measured immune responses reflect current parasite infections in a wild carnivore and are linked to longevity
Cited by: 1
Author(s): Susana Carolina Martins Ferreira, Miguel Veiga, Heribert Hofer, Marion L. East, Gábor Á. Czirják
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.4500

A metabarcoding approach for the feeding habits of European hake in the Adriatic Sea
Cited by: 17
Author(s): Giulia Riccioni, Marco Stagioni, Corrado Piccinetti, Simone Libralato
Software Mentions: 5
Published: about 6 years ago

10.1128/AEM.00149-21

Hyperlocal Variation in Soil Iron and the Rhizosphere Bacterial Community Determines Dollar Spot Development in Amenity Turfgrass
Cited by: 1
Author(s): Ming-Yi Chou, Smita Shrestha, Renée A. Rioux, Paul L. Koch
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-51142-8

Alterations to the Gastrointestinal Microbiome Associated with Methamphetamine Use among Young Men who have Sex with Men
Cited by: 35
Author(s): Ryan Cook, Jennifer A. Fulcher, Nicole H. Tobin, Fan Li, Dong Hoon Lee, Cora L. Woodward, Marjan Javanbakht, Ron Brookmeyer, Steven Shoptaw, Robert Bolan, Grace M. Aldrovandi, Pamina M. Gorbach
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-019-53623-2

A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
Cited by: 41
Author(s): Shijie Deng, Heidi M.-L. Wipf, Grady Pierroz, Theodore K. Raab, Rajnish Khanna, Devin Coleman‐Derr
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.7755

Legacy of pre‐eruption vegetation affects ground‐dwelling arthropod communities after different types of volcanic disturbance
Cited by: 2
Author(s): Kyohei Iida, Daisuke Hayasaka, Yuka Suzuki, Tatsuo Uchida, Takuo Sawahata, Koya Hashimoto
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-017-04016-w

Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France
Cited by: 30
Author(s): Anouk Zancarini, Isidora Echenique‐Subiabre, Didier Debroas, Najwa Taïb, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.4086

Canopy bird assemblages are less influenced by habitat age and isolation than understory bird assemblages in Neotropical secondary forest
Cited by: 20
Author(s): Tom Bradfer‐Lawrence, Nick Gardner, Daisy H. Dent
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.3942

Heard but not seen: Comparing bat assemblages and study methods in a mosaic landscape in the Western Ghats of India
Cited by: 16
Author(s): Claire F. R. Wordley, Mahesh Sankaran, Divya Mudappa, John D. Altringham
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-49956-7

Gut microbiome comparability of fresh-frozen versus stabilized-frozen samples from hospitalized patients using 16S rRNA gene and shotgun metagenomic sequencing
Cited by: 14
Author(s): Emma Elizabeth Ilett, Mette Jørgensen, Marc Noguera‐Julian, Gedske Daugaard, Daniel D. Murray, Marie Helleberg, Roger Paredes, Jens D Lundgren, Henrik Sengeløv, Cameron Ross MacPherson
Software Mentions: 5
Published: about 5 years ago

10.1128/AEM.01229-20

Relationship between Rainfall, Fecal Pollution, Antimicrobial Resistance, and Microbial Diversity in an Urbanized Subtropical Bay
Cited by: 17
Author(s): Nicole C. Powers, Hailey R. Wallgren, Sandra Marbach, John Turner
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-017-00223-7

Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
Cited by: 78
Author(s): S. J. Meale, S. C. Li, Paula Azevedo, Hooman Derakhshani, T.J. DeVries, J.C. Plaizier, M.A. Steele, Ehsan Khafipour
Software Mentions: 5
Published: over 7 years ago

10.1038/srep43465

Parasitism perturbs the mucosal microbiome of Atlantic Salmon
Cited by: 86
Author(s): Martin S. Llewellyn, S. Leadbeater, Carlos García, François‐Étienne Sylvain, María Custodio, Keng Pee Ang, Frank C. Powell, Gary R. Carvalho, Simon Creer, J. M. Elliot, Nicolas Derôme
Software Mentions: 5
Published: over 7 years ago

10.1186/s12890-016-0303-4

The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus
Cited by: 6
Author(s): Marc A. Sze, Stella Xu, Janice M. Leung, Emily A. Vucic, Tawimas Shaipanich, Aida Moghadam, Marianne Harris, Silvia Guillemi, Sunita Sinha, Corey Nislow, Darra Murphy, Cameron Hague, Jonathon Leipsic, Stephen Lam, Wan L. Lam, Julio S. G. Montaner, Don D. Sin, S. F. Paul Man
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2020.02032

Berry Polyphenols and Fibers Modulate Distinct Microbial Metabolic Functions and Gut Microbiota Enterotype-Like Clustering in Obese Mice
Cited by: 75
Author(s): Maria Carolina Rodríguez-Daza, Marcela Roquim, Stéphanie Dudonné, Geneviève Pilon, Émile Lévy, André Marette, Denis Roy, Yves Desjardins
Software Mentions: 5
Published: about 4 years ago

10.1002/ece3.4518

Ecological patterns in the skin microbiota of frogs from tropical Australia
Cited by: 15
Author(s): Keith A. Christian, Chava L. Weitzman, Alea Rose, Mirjam Kaestli, Karen S. Gibb
Software Mentions: 5
Published: about 6 years ago

10.3390/microorganisms9051033

Microbiomes in Suspended Soils of Vascular Epiphytes Differ from Terrestrial Soil Microbiomes and from Each Other
Cited by: 9
Author(s): A. K. Eskov, Aleksei Zverev, Evgeny Abakumov
Software Mentions: 5
Published: over 3 years ago

10.1186/s12903-021-01439-w

Microbiological findings in early and late implant loss: an observational clinical case-controlled study
Cited by: 12
Author(s): Michael Korsch, Silke‐Mareike Marten, Dominic A. Stoll, Christopher Prechtl, Andreas Dötsch
Software Mentions: 5
Published: over 3 years ago

10.3390/microorganisms9091803

Phytate and Microbial Suspension Amendments Increased Soybean Growth and Shifted Microbial Community Structure
Cited by: 5
Author(s): Boshir Ahmed, Jean-Baptiste Floc’h, Lahrach Zakaria, Mohamed Hijri
Software Mentions: 5
Published: about 3 years ago

10.1128/AEM.02646-18

Changes in the Active, Dead, and Dormant Microbial Community Structure across a Pleistocene Permafrost Chronosequence
Cited by: 58
Author(s): Alexander Burkert, Thomas A. Douglas, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 5
Published: over 5 years ago

10.1186/s40104-020-00542-2

Linkage between the intestinal microbiota and residual feed intake in broiler chickens
Cited by: 26
Author(s): Jing Liu, Sydney Stewart, Kelsy Robinson, Qing Yang, Wentao Lyu, Melanie A. Whitmore, Guolong Zhang
Software Mentions: 5
Published: almost 4 years ago

10.3390/microorganisms8040604

Unraveling Heterogeneity of Coral Microbiome Assemblages in Tropical and Subtropical Corals in the South China Sea
Cited by: 11
Author(s): Sanqiang Gong, Xuejie Jin, Lijuan Ren, Yehui Tan, Xiaomin Xia
Software Mentions: 5
Published: over 4 years ago

10.1186/s40478-020-00988-5

Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer’s disease
Cited by: 64
Author(s): Charlotte Mezö, Nikolaos Dokalis, Omar Mossad, Ori Staszewski, Jana Neuber, Bahtiyar Yılmaz, Daniel Schnepf, Mercedes Gomez de Agüero, Stephanie C. Ganal‐Vonarburg, Andrew J. Macpherson, Melanie Meyer‐Luehmann, Peter Staeheli, Thomas Blank, Marco Prinz, Daniel Erny
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.6219

Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results
Cited by: 17
Author(s): Camille S. Delavaux, James D. Bever, Erin M. Karppinen, Luke D. Bainard
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-018-0458-8

Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation
Cited by: 16
Author(s): Kymberleigh A. Romano, Kimberly A. Dill‐McFarland, Kazuyuki Kasahara, Robert L. Kerby, Eugenio I. Vivas, Daniel Amador‐Noguez, Pamela Herd, Federico E. Rey
Software Mentions: 5
Published: over 6 years ago

10.1016/j.ebiom.2021.103538

Airway microbial communities, smoking and asthma in a general population sample
Cited by: 21
Author(s): Elena Turek, Michael J. Cox, Michael Hunter, Jennie Hui, Phillip James, Saffron A.G. Willis‐Owen, Leah Cuthbertson, Alan James, A.W. Musk, Miriam F. Moffatt, William Cookson
Software Mentions: 5
Published: about 3 years ago

10.1186/s40168-021-01009-w

Age and sex-associated variation in the multi-site microbiome of an entire social group of free-ranging rhesus macaques
Cited by: 35
Author(s): Mareike C. Janiak, Michael J. Montague, Catalina I. Villamil, Michala K. Stock, Amber E. Trujillo, Allegra N. DePasquale, Joseph D. Orkin, Samuel E. Bauman Surratt, Olga González, Michael L. Platt, Melween I. Martínez, Susan C. Antón, Maria Gloria Domínguez-Bello, Amanda D. Melin, James P. Higham
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.00993

The Water Microbiome Through a Pilot Scale Advanced Treatment Facility for Direct Potable Reuse
Cited by: 33
Author(s): Rose Kantor, Scott Miller, Kara L. Nelson
Software Mentions: 5
Published: over 5 years ago

10.3390/d12060245

Nourished, Exposed Beaches Exhibit Altered Sediment Structure and Meiofaunal Communities
Cited by: 8
Author(s): Stephen R. Fegley, Julian P. Smith, Douglas E. Johnson, Amelia U. Schirmer, Jeremiah Daniel JonesBoggs, Austin Edmonds, Joseph Bursey
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-017-0237-y

Normalization and microbial differential abundance strategies depend upon data characteristics
Cited by: 1,253
Author(s): Sophie Weiss, Zhenjiang Zech Xu, Shyamal D. Peddada, Amir Almasi‐Hashiani, Kyle Bittinger, Antonio González, Catherine Lozupone, Jesse Zaneveld, Yoshiki Vázquez-Baeza, Amanda Birmingham, Embriette R. Hyde, Rob Knight
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2018.01451

Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected Patients
Cited by: 86
Author(s): Wei Lü, Yuqing Feng, Fanhui Jing, Yang Han, Na Lyu, Fei Liu, Jing Li, Xiaojing Song, Jing Xie, Zhifeng Qiu, Ting Zhu, Bertrand Routy, Jean‐Pierre Routy, Taisheng Li, Baoli Zhu
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.603234

Database Mining to Unravel the Ecology of the Phylum Chloroflexi in Methanogenic Full Scale Bioreactors
Cited by: 13
Author(s): Patricia Bovio-Winkler, Angela Cabezas, Claudia Etchebehere
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0216758

An integrated insight into the response of bacterial communities to anthropogenic contaminants in a river: A case study of the Wonderfonteinspruit catchment area, South Africa
Cited by: 20
Author(s): Karen Jordaan, A. Comeau, Damase P. Khasa, Cornelius Carlos Bezuidenhout
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-016-0164-3

Effect of room temperature transport vials on DNA quality and phylogenetic composition of faecal microbiota of elderly adults and infants
Cited by: 52
Author(s): Colin Hill, Jillian R. Brown, Denise B. Lynch, Ian B. Jeffery, C. Anthony Ryan, R. Paul Ross, Catherine Stanton, Paul W. O’Toole
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0194336

Animal taxa contrast in their scale-dependent responses to land use change in rural Africa
Cited by: 11
Author(s): Stefan H. Foord, Lourens H. Swanepoel, Steven W. Evans, Colin S. Schoeman, Barend Erasmus, M. Corrie Schoeman, Mark Keith, Alain Smith, Evans V. Mauda, Naudene Maree, Nkhumeleni Lesly Nembudani, A.S. Dippenaar-Schoeman, Thinandavha C. Munyai, Peter J. Taylor
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-021-01042-9

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop
Cited by: 40
Author(s): Javier A. Ceja-Navarro, Wang Yuan, Daliang Ning, Abelardo Arellano, Leila Ramanculova, Mengting Yuan, Alyssa Byer, Kelly D. Craven, Malay C. Saha, Eoin L. Brodie, Jennifer Pett‐Ridge, Mary K. Firestone
Software Mentions: 5
Published: over 3 years ago

10.3390/insects10110391

Do Host Plant and Associated Ant Species Affect Microbial Communities in Myrmecophytes?
Cited by: 5
Author(s): Mario X. Ruiz-González, Céline Leroy, Alain Déjean, Hervé Gryta, Patricia Jargeat, Angelo D. Armijos Carrión, Jérôme Orivel
Software Mentions: 5
Published: about 5 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292