cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1111/1751-7915.13323

Diet and diet‐associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi)
Cited by: 56
Author(s): Jackson Wilkes Walburn, Bernd Wemheuer, Torsten Thomas, Elizabeth Copeland, Wayne A. O’Connor, Mark A. Booth, D. Stewart Fielder, Suhelen Egan
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41396-020-00783-z

Root pathogen diversity and composition varies with climate in undisturbed grasslands, but less so in anthropogenically disturbed grasslands
Cited by: 16
Author(s): Camille S. Delavaux, Josh L. Schemanski, Geoffrey L. House, Alice G. Tipton, Benjamin A. Sikes, James D. Bever
Software Mentions: 6
Published: about 6 years ago

10.1186/s40168-020-00854-5

Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteria
Cited by: 52
Author(s): Xingxing Jian, Yinghong Zhu, Jian Ouyang, Yihui Wang, Qian Lei, Jiliang Xia, Yongjun Guan, Jingyu Zhang, Jiaojiao Guo, Yanjuan He, Jinuo Wang, Jian Li, Jingchao Lin, Mingming Su, Guancheng Li, Minghua Wu, Lugui Qiu, Juanjuan Xiang, Lu Xie, Jia Wang, Wen Zhou
Software Mentions: 6
Published: over 6 years ago

10.1186/s12862-016-0702-4

Fine-scale genetic structure among greater sage-grouse leks in central Nevada
Cited by: 18
Author(s): Joshua P. Jahner, Daniel D. Gibson, Chava L. Weitzman, Erik J. Blomberg, James S. Sedinger, Thomas L. Parchman
Software Mentions: 6
Published: over 10 years ago

10.3389/fmicb.2018.02619

Stochastic and Deterministic Effects of a Moisture Gradient on Soil Microbial Communities in the McMurdo Dry Valleys of Antarctica
Cited by: 37
Author(s): Kevin C. Lee, Tancredi Caruso, Stephen Archer, Len N. Gillman, Maggie C. Y. Lau, S. Craig Cary, Charles K. Lee, Stephen B. Pointing
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0248030

Evaluating domestication and ploidy effects on the assembly of the wheat bacterial microbiome
Cited by: 22
Author(s): Heidi M.-L. Wipf, Devin Coleman‐Derr
Software Mentions: 6
Published: over 5 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2016.00372

A Combination of Biochar–Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties
Cited by: 62
Author(s): Jun Ye, Rui Zhang, Shaun Nielsen, Stephen Joseph, Danfeng Huang, Torsten Thomas
Software Mentions: 6
Published: over 10 years ago

10.1038/s41398-021-01531-3

Gut microbial biomarkers for the treatment response in first-episode, drug-naïve schizophrenia: a 24-week follow-up study
Cited by: 22
Author(s): Xiuxia Yuan, Yunpeng Wang, Xue Li, Jiajun Jiang, Yulin Kang, Lijuan Pang, Peifen Zhang, Ang Li, Luxian Lv, Ole A. Andreassen, Xiaoduo Fan, Shaohua Hu, Xueqin Song
Software Mentions: 6
Published: about 5 years ago

10.1038/s41396-020-00749-1

Activity-based cell sorting reveals responses of uncultured archaea and bacteria to substrate amendment
Cited by: 37
Author(s): Nicholas J. Reichart, Zackary J. Jay, Viola Krukenberg, Albert E. Parker, Rachel L. Spietz, Roland Hatzenpichler
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2020.575625

Plant Genotype Influences Physicochemical Properties of Substrate as Well as Bacterial and Fungal Assemblages in the Rhizosphere of Balsam Poplar
Cited by: 9
Author(s): Karelle Rheault, Denis Lachance, Marie-Josée Morency, Évelyne Thiffault, Marie Guittonny, Nathalie Isabel, Christine Martineau, Armand Séguin
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-019-0639-0

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
Cited by: 61
Author(s): Rachael E. Antwis, Katie L. Edwards, Bryony Unwin, Susan L. Walker, Susanne Shultz
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-99441-3

Potential impacts of polymetallic nodule removal on deep-sea meiofauna
Cited by: 8
Author(s): Ellen Pape, Tânia Campinas Bezerra, Hendrik Gheerardyn, Marius Buydens, Amanda Kieswetter, Ann Vanreusel
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-98089-3

Biopsy bacterial signature can predict patient tissue malignancy
Cited by: 10
Author(s): Glenn Hogan, Julia Eckenberger, Neegam Narayanen, Sidney P. Walker, Marcus J. Claesson, Mark Corrigan, Deirdre O’Hanlon, Mark Tangney
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-98724-z

Novel attempt at discrimination of a bullet-shaped siphonophore (Family Diphyidae) using matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-ToF MS)
Cited by: 1
Author(s): Nayeon Park, Jisu Yeom, Raehyuk Jeong, Wonchoel Lee
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-021-01053-6

Towards enhancing coral heat tolerance: a “microbiome transplantation” treatment using inoculations of homogenized coral tissues
Cited by: 60
Author(s): Talisa Doering, Marlene Wall, Lalita Putchim, Tipwimon Rattanawongwan, Roman Schroeder, Ute Hentschel, Anna Krystyna Roik
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-021-01108-8

Human gut-derived B. longum subsp. longum strains protect against aging in a d-galactose-induced aging mouse model
Cited by: 13
Author(s): Yue Xiao, Chao Yang, Leilei Yu, Fengwei Tian, Yarong Wu, Hao Zhang, Ruifu Yang, Colin Hill, Yu‐Jun Cui, Qixiao Zhai
Software Mentions: 6
Published: about 5 years ago

10.3390/ijms22115981

Longitudinal Changes in Diet Cause Repeatable and Largely Reversible Shifts in Gut Microbial Communities of Laboratory Mice and Are Observed across Segments of the Entire Intestinal Tract
Cited by: 8
Author(s): Adrian Low, Melissa Soh, Sou Miyake, Vanessa Zhi Jie Aw, Jian Feng, Adeline Wong, Henning Seedorf
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0220953

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Cited by: 67
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Michael Wright, Josip Rudar
Software Mentions: 6
Published: about 7 years ago

10.1084/jem.20200606

Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Cited by: 31
Author(s): Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Étienne Patin, Oliver J. Harrison, Lluı́s Quintana-Murci, Ira Mellman, Darragh Duffy, Matthew L. Albert
Software Mentions: 6
Published: almost 6 years ago

10.3390/biom10071041

Untargeted LC-MS Metabolomics Differentiates Between Virulent and Avirulent Clinical Strains of Pseudomonas aeruginosa
Cited by: 18
Author(s): Tobias Depke, Janne G. Thöming, Adrian Kordes, Susanne Häußler, Mark Brönstrup
Software Mentions: 6
Published: about 6 years ago

10.1111/1751-7915.13450

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas
Cited by: 47
Author(s): Huan Li, Rui Zhou, Jun Zhu, Xiaodan Huang, Jiapeng Qu
Software Mentions: 6
Published: over 7 years ago

10.7717/peerj.3674

Microbiome succession during ammonification in eelgrass bed sediments
Cited by: 21
Author(s): Cassandra L. Ettinger, Susan L. Williams, Jessica M. Abbott, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0244616

Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia
Cited by: 11
Author(s): Jan Niklas Macher, Martina Prazeres, Sarah Taudien, Jamaluddin Jompa, Aleksey Sadekov, Willem Renema
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2020.574110

Phytophthora Root Rot Modifies the Composition of the Avocado Rhizosphere Microbiome and Increases the Abundance of Opportunistic Fungal Pathogens
Cited by: 28
Author(s): Itzel A. Solís-García, Oscar Ceballos-Luna, Elvis Marian Cortazar-Murillo, Damaris Desgarennes, Edith Garay‐Serrano, Violeta Patiño-Conde, Edgar Guevara-Avendaño, Alfonso Méndez-Bravo, Frédérique Reverchon
Software Mentions: 6
Published: over 5 years ago

10.1186/s42523-020-00057-1

Skin microbiome of beluga whales: spatial, temporal, and health-related dynamics
Cited by: 12
Author(s): Amy M. Van Cise, Paul R. Wade, Caroline E. C. Goertz, Kathleen A. Burek‐Huntington, Kim M. Parsons, Tonya M. Clauss, Roderick C. Hobbs, Amy Apprill
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2021.723682

Establishment of Gut Microbiome During Early Life and Its Relationship With Growth in Endangered Crested Ibis (Nipponia nippon)
Cited by: 13
Author(s): Ying Zhu, Yudong Li, Hai-Qiong Yang, Ke He, Keyi Tang
Software Mentions: 6
Published: about 5 years ago

10.1007/s00248-019-01412-9

Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature
Cited by: 32
Author(s): Jonas Frankel-Bricker, Michael Song, Maia J. Benner, Sarah Schaack
Software Mentions: 5
Published: about 7 years ago

10.3389/fimmu.2021.722206

Gut Bacterial Characteristics of Patients With Type 2 Diabetes Mellitus and the Application Potential
Cited by: 35
Author(s): Yanyan Que, Man Cao, Jianquan He, Qiang Zhang, Qiongyun Chen, Changsheng Yan, Aiqiang Lin, Luxi Yang, Zezhen Wu, Dan Zhu, Fengwu Chen, Zhangran Chen, Chuanxing Xiao, Kaijian Hou, Bangzhou Zhang
Software Mentions: 5
Published: about 5 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
Cited by: 64
Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: about 8 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: over 5 years ago

10.3389/fimmu.2020.00425

Interleukin-17A/F1 Deficiency Reduces Antimicrobial Gene Expression and Contributes to Microbiome Alterations in Intestines of Japanese medaka (Oryzias latipes)
Cited by: 18
Author(s): Yo Okamura, Natsuki Morimoto, Daisuke Ikeda, Naoki Mizusawa, Shugo Watabe, Hiroshi Miyanishi, Yuichi Saeki, Haruko Takeyama, Takashi Aoki, Masato Kinoshita, Tomoya Kono, Masahiro Sakai, Jun ichi Hikima
Software Mentions: 5
Published: over 6 years ago

10.3390/life11030246

Postoperative Complications Are Associated with Long-Term Changes in the Gut Microbiota Following Colorectal Cancer Surgery
Cited by: 7
Author(s): Felix C. F. Schmitt, Martin Schneider, William Mathejczyk, Markus A. Weigand, Jane C. Figueiredo, Christopher I. Li, David Shibata, Erin M. Siegel, Adetunji T. Toriola, Cornelia M. Ulrich, Alexis Ulrich, Sébastien Boutin, Biljana Gigic
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-59111-2

Relative roles of biological and physical processes influencing coral recruitment during the lag phase of reef community recovery
Cited by: 19
Author(s): Marine Gouezo, Dawnette Olsudong, Katharina Fabricius, Peter Lynton Harrison, Yimnang Golbuu, Christopher Doropoulos
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-57798-x

Impact of the early-life skin microbiota on the development of canine atopic dermatitis in a high-risk breed birth cohort
Cited by: 8
Author(s): Sabrina Rodriguez‐Campos, Ana Rostaher, Lena Zwickl, Nina Fischer, Isabelle Brodard, Sara Vidal, Bernd W. Brandt, Claude Favrot, Vincent Perreten
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-58576-5

Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration
Cited by: 49
Author(s): Obinna T. Ezeokoli, Cornelius Carlos Bezuidenhout, Mark Maboeta, Damase P. Khasa, Rasheed Adeleke
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0236796

Comparative study of neighboring Holm oak and olive trees-belowground microbial communities subjected to different soil management
Cited by: 9
Author(s): Antonio J. Fernández‐González, Nuria M. Wentzien, Pablo J. Villadas, Antonio Valverde-Corredor, Ana V. Lasa, Carmen Gómez-Lama Cabanás, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 5
Published: about 6 years ago

10.1186/s13068-016-0652-5

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion
Cited by: 56
Author(s): Jo De Vrieze, Leticia Regueiro, Ruben Props, Ramiro Vílchez-Vargas, Ruy Jáuregui, Dietmar H. Pieper, Juan M. Lema, Marta Carballa
Software Mentions: 5
Published: almost 10 years ago

10.3389/fimmu.2019.02999

Opioids Impair Intestinal Epithelial Repair in HIV-Infected Humanized Mice
Cited by: 37
Author(s): Jingjing Meng, Santanu Banerjee, Li Zhang, Gregory M. Sindberg, Shamsudheen Moidunny, Bin Li, David J. Robbins, Mohit Girotra, Bradley J. Segura, Sundaram Ramakrishnan, Sabita Roy
Software Mentions: 5
Published: over 6 years ago

10.3389/fimmu.2017.00655

Lactobacillus johnsonii N6.2 Modulates the Host Immune Responses: A Double-Blind, Randomized Trial in Healthy Adults
Cited by: 66
Author(s): Guillermo Marcial, Amanda Ford, Michael J. Haller, Salvador A. Gezan, Natalie A. Harrison, David Cai, Julie Meyer, Daniel J. Perry, Mark A. Atkinson, Clive Wasserfall, Timothy J. Garrett, Claudio F. González, Todd M. Brusko, Wendy J. Dahl, Graciela L. Lorca
Software Mentions: 5
Published: over 9 years ago

10.1186/s40168-020-00858-1

Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-53623-2

A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
Cited by: 41
Author(s): Shijie Deng, Heidi M.-L. Wipf, Grady Pierroz, Theodore K. Raab, Rajnish Khanna, Devin Coleman‐Derr
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0105043

Phylobetadiversity among Forest Types in the Brazilian Atlantic Forest Complex
Cited by: 56
Author(s): Leandro da Silva Duarte, Rodrigo Scarton Bergamin, Vinícius Marcilio-Silva, Guilherme Dubal dos Santos Seger, Márcia C. M. Marques
Software Mentions: 5
Published: about 12 years ago

10.3389/fcimb.2019.00339

Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses
Cited by: 17
Author(s): Allison R. Kolbe, Eduardo Castro-Nallar, Diego Preciado, Marcos Pérez‐Losada
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-019-49956-7

Gut microbiome comparability of fresh-frozen versus stabilized-frozen samples from hospitalized patients using 16S rRNA gene and shotgun metagenomic sequencing
Cited by: 14
Author(s): Emma Elizabeth Ilett, Mette Jørgensen, Marc Noguera‐Julian, Gedske Daugaard, Daniel D. Murray, Marie Helleberg, Roger Paredes, Jens D Lundgren, Henrik Sengeløv, Cameron Ross MacPherson
Software Mentions: 5
Published: about 7 years ago

10.3389/fcimb.2021.654074

Intestinal Microbiota Mediates High-Fructose and High-Fat Diets to Induce Chronic Intestinal Inflammation
Cited by: 30
Author(s): Rong Tan, Huiwei Dong, Zhengshan Chen, Min Jin, Jing Yin, Haibei Li, Danyang Shi, Yi-fan Shao, Huaran Wang, Tianjiao Chen, Dong Yang, Jùnwén Lǐ
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-46923-0

The Predominant Oral Microbiota Is Acquired Early in an Organized Pattern
Cited by: 63
Author(s): Rosalyn Sulyanto, Zachary A. Thompson, Clifford J. Beall, Eugene J. Leys, Ann L. Griffen
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.9644

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters
Cited by: 26
Author(s): Giulia M. Marchioro, Bettina Glasl, Aschwin H. Engelen, Ester Á. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Software Mentions: 5
Published: about 6 years ago

10.3389/fcimb.2021.579766

Preterm Birth Is Correlated With Increased Oral Originated Microbiome in the Gut
Cited by: 14
Author(s): Yin Chen, Jingrui Chen, Xiaoyi Wu, Ye-Ling Liu, He Qian, Ying Cao, Yie Huang, Sisun Liu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-46024-y

Direct and indirect effects of urban gardening on aboveground and belowground diversity influencing soil multifunctionality
Cited by: 24
Author(s): Simon Tresch, David Frey, Renée‐Claire Le Bayon, Paul Mäder, Bernhard Stehle, Andreas Fließbach, Marco Moretti
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-45368-9

Microbial communities in top- and subsoil of repacked soil columns respond differently to amendments but their diversity is negatively correlated with plant productivity
Cited by: 23
Author(s): Corinne Celestina, Jennifer L. Wood, James B. Manson, Xiaojuan Wang, P. W. G. Sale, Caixian Tang, Ashley E. Franks
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0130084

Baseline Assessment of Mesophotic Reefs of the Vitória-Trindade Seamount Chain Based on Water Quality, Microbial Diversity, Benthic Cover and Fish Biomass Data
Cited by: 51
Author(s): Pedro Milet Meirelles, Gilberto M. Amado‐Filho, Guilherme H. Pereira-Filho, Hudson T. Pinheiro, Rodrigo L. Moura, Jean‐Christophe Joyeux, Eric F. Mazzei, Alex Cardoso Bastos, Robert A. Edwards, Elizabeth A. Dinsdale, Rodolfo Paranhos, Eidy de Oliveira Santos, Tetsuya Iida, Kazuyoshi Gotoh, Shota Nakamura, Tomoo Sawabe, Carlos Eduardo de Rezende, Luiz M. R. Gadelha, Ronaldo B. Francini‐Filho, Cristiane Thompson, Fabiano L. Thompson
Software Mentions: 5
Published: over 11 years ago

10.1128/AEM.02969-19

Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil
Cited by: 12
Author(s): Yuan Zhang, Xiuli Hao, Adriana M. García-Lemos, Inês Nunes, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 5
Published: over 6 years ago

10.1093/bioinformatics/btw311

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances
Cited by: 94
Author(s): Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.7014

Soil bacterial and fungal communities of six bahiagrass cultivars
Cited by: 10
Author(s): Lukas Beule, Ko‐Hsuan Chen, Chih‐Ming Hsu, Cheryl L. Mackowiak, José C. B. Dubeux, Ann R. Blount, Hui‐Ling Liao
Software Mentions: 5
Published: over 7 years ago

10.3389/fcimb.2021.646348

Dysbiosis and Implication of the Gut Microbiota in Diabetic Retinopathy
Cited by: 62
Author(s): Yinhua Huang, Zhijie Wang, Hongjie Ma, Shangli Ji, Zhongping Chen, Zekai Cui, Jiansu Chen, Shibo Tang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-44338-5

In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner
Cited by: 25
Author(s): Timothy A. Johnson, Matthew J. Sylte, Torey Looft
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.4606

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?
Cited by: 21
Author(s): Masao Higo, Ryohei Sato, Ayu Serizawa, Yuichi Takahashi, Kento Gunji, Yuya Tatewaki, Katsunori Isobe
Software Mentions: 5
Published: over 8 years ago

10.1128/AEM.00149-21

Hyperlocal Variation in Soil Iron and the Rhizosphere Bacterial Community Determines Dollar Spot Development in Amenity Turfgrass
Cited by: 1
Author(s): Ming-Yi Chou, Smita Shrestha, Renée A. Rioux, Paul L. Koch
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-40910-1

Phosphorus source driving the soil microbial interactions and improving sugarcane development
Cited by: 25
Author(s): Thiago Gumière, Alain N. Rousseau, Diogo Paes da Costa, Alice de Souza Cassetari, Simone Raposo Cotta, Fernando Dini Andreote, Silvio José Gumière, Paulo Sérgio Pavinato
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-018-35159-z

Taxon-specific responses to different forestry treatments in a temperate forest
Cited by: 28
Author(s): Zoltán Elek, Bence Kovács, Réka Aszalós, Gergely Boros, Ferenc Samu, Flóra Tinya, Péter Ódor
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-018-36709-1

Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents
Cited by: 27
Author(s): Olumide Ajibola, Aislinn D. Rowan, Clement O. Ogedengbe, Mari B. Mshelia, Damien J. Cabral, Anthonius A. Eze, Stephen K. Obaro, Peter Belenky
Software Mentions: 5
Published: over 7 years ago

10.3390/foods9091247

Application of a High-Throughput Amplicon Sequencing Method to Chart the Bacterial Communities that Are Associated with European Fermented Meats from Different Origins
Cited by: 14
Author(s): Emiel Van Reckem, Christina Charmpi, David Van der Veken, Wim Borremans, Luc De Vuyst, Stefan Weckx, Frédéric Leroy
Software Mentions: 5
Published: about 6 years ago

10.3389/fcimb.2021.633242

Effects of Smoking on Inflammatory Markers in a Healthy Population as Analyzed via the Gut Microbiota
Cited by: 13
Author(s): Yan Su, Zhonghui Ma, Mengfan Jiao, Youxiang Wang, Ang Li, Shuzhe Ding
Software Mentions: 5
Published: about 5 years ago

10.3389/fbioe.2020.604838

Response of Microbial Community to Induced Failure of Anaerobic Digesters Through Overloading With Propionic Acid Followed by Process Recovery
Cited by: 15
Author(s): Azin Khafipour, Elsie M. Jordaan, Daniel Flores-Orozco, Ehsan Khafipour, David B. Levin, Richard Sparling
Software Mentions: 5
Published: almost 6 years ago

10.1128/AEM.01229-20

Relationship between Rainfall, Fecal Pollution, Antimicrobial Resistance, and Microbial Diversity in an Urbanized Subtropical Bay
Cited by: 17
Author(s): Nicole C. Powers, Hailey R. Wallgren, Sandra Marbach, John Turner
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.2454

Root exudate cocktails: the link between plant diversity and soil microorganisms?
Cited by: 154
Author(s): Katja Steinauer, Antonis Chatzinotas, Nico Eisenhauer
Software Mentions: 5
Published: about 10 years ago

10.1002/ece3.5711

Site‐specific responses of foliar fungal microbiomes to nutrient addition and herbivory at different spatial scales
Cited by: 15
Author(s): Candice Y. Lumibao, Elizabeth T. Borer, Bradford Condon, Linda L. Kinkel, Georgiana May, Eric W. Seabloom
Software Mentions: 5
Published: almost 7 years ago

10.1002/ece3.6477

Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-34619-w

A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Cited by: 28
Author(s): Aline B. M. Vaz, Paula Luize Camargos Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz Marcelo Ribeiro Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera Lúcia dos Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Goés-Neto
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12890-016-0303-4

The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus
Cited by: 6
Author(s): Marc A. Sze, Stella Xu, Janice M. Leung, Emily A. Vucic, Tawimas Shaipanich, Aida Moghadam, Marianne Harris, Silvia Guillemi, Sunita Sinha, Corey Nislow, Darra Murphy, Cameron Hague, Jonathon Leipsic, Stephen Lam, Wan L. Lam, Julio S. G. Montaner, Don D. Sin, S. F. Paul Man
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41598-018-32917-x

Metabarcoding of marine environmental DNA based on mitochondrial and nuclear genes
Cited by: 42
Author(s): Babett Günther, Thomas Knebelsberger, Hermann Neumann, Silke Laakmann, Pedro Martínez Arbizu
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2021.596517

Fungal Communities on Standing Litter Are Structured by Moisture Type and Constrain Decomposition in a Hyper-Arid Grassland
Cited by: 11
Author(s): Jim Logan, Kathryn M. Jacobson, Peter J. Jacobson, Sarah E. Evans
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9003

Changes in the gut microbiota during Asian particolored bat (Vespertilio sinensis) development
Cited by: 8
Author(s): Zongsheng Yin, Keping Sun, Aoqiang Li, Deyi Sun, Zhongle Li, Guohong Xiao, Feng Jiang
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.447

Mobile phones carry the personal microbiome of their owners
Cited by: 127
Author(s): James F. Meadow, Adam E. Altrichter, Jessica L. Green
Software Mentions: 5
Published: over 12 years ago

10.1186/s12903-021-01439-w

Microbiological findings in early and late implant loss: an observational clinical case-controlled study
Cited by: 12
Author(s): Michael Korsch, Silke‐Mareike Marten, Dominic A. Stoll, Christopher Prechtl, Andreas Dötsch
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.4500

A metabarcoding approach for the feeding habits of European hake in the Adriatic Sea
Cited by: 17
Author(s): Giulia Riccioni, Marco Stagioni, Corrado Piccinetti, Simone Libralato
Software Mentions: 5
Published: about 8 years ago

10.1128/AEM.02646-18

Changes in the Active, Dead, and Dormant Microbial Community Structure across a Pleistocene Permafrost Chronosequence
Cited by: 58
Author(s): Alexander Burkert, Thomas A. Douglas, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 5
Published: over 7 years ago

10.1098/rsos.180041

Synchronized shift of oral, faecal and urinary microbiotas in bats and natural infection dynamics during seasonal reproduction
Cited by: 25
Author(s): Muriel Dietrich, Teresa Kearney, Ernest C.J. Seamark, Janusz T. Pawęska, Wanda Markotter
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-31795-7

Macrofungal species distributions depend on habitat partitioning of topography, light, and vegetation in a temperate mountain forest
Cited by: 29
Author(s): Yun Chen, Zuoqiang Yuan, Bi Shi, Xueying Wang, Ye Yongzhong, Jens‐Christian Svenning
Software Mentions: 5
Published: about 8 years ago

10.1186/s40478-020-00988-5

Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer’s disease
Cited by: 64
Author(s): Charlotte Mezö, Nikolaos Dokalis, Omar Mossad, Ori Staszewski, Jana Neuber, Bahtiyar Yılmaz, Daniel Schnepf, Mercedes Gomez de Agüero, Stephanie C. Ganal‐Vonarburg, Andrew J. Macpherson, Melanie Meyer‐Luehmann, Peter Staeheli, Thomas Blank, Marco Prinz, Daniel Erny
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.7602

Noninvasively measured immune responses reflect current parasite infections in a wild carnivore and are linked to longevity
Cited by: 1
Author(s): Susana Carolina Martins Ferreira, Miguel Veiga, Heribert Hofer, Marion L. East, Gábor Á. Czirják
Software Mentions: 5
Published: over 5 years ago

10.1007/s00213-019-05218-y

Microbe and host interaction in gastrointestinal homeostasis
Cited by: 18
Author(s): Rachael Horne, James St. Pierre, Sufian Odeh, Michael G. Surette, Jane A. Foster
Software Mentions: 5
Published: over 7 years ago

10.1098/rsos.170057

Absence of population structure across elevational gradients despite large phenotypic variation in mountain chickadees (Poecile gambeli)
Cited by: 20
Author(s): Carrie L. Branch, Joshua P. Jahner, Dovid Y. Kozlovsky, Thomas L. Parchman, Vladimir V. Pravosudov
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2021.647977

Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae
Cited by: 12
Author(s): Orlando Vargas, María Soledad Gutiérrez, Mario Caruffo, Benjamín Valderrama, Daniel A. Medina, Katherine García, Angélica Reyes-Jara, Mauricio Toro, Carmen G. Feijóo, Paola Navarrete
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.00717

Disentangling the Influence of Environment, Host Specificity and Thallus Differentiation on Bacterial Communities in Siphonous Green Seaweeds
Cited by: 23
Author(s): Kathryn Lee Morrissey, Levent Çavaş, Anne Willems, Olivier De Clerck
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.7755

Legacy of pre‐eruption vegetation affects ground‐dwelling arthropod communities after different types of volcanic disturbance
Cited by: 2
Author(s): Kyohei Iida, Daisuke Hayasaka, Yuka Suzuki, Tatsuo Uchida, Takuo Sawahata, Koya Hashimoto
Software Mentions: 5
Published: over 5 years ago

10.1098/rsos.170082

Density-dependent coral recruitment displays divergent responses during distinct early life-history stages
Cited by: 54
Author(s): Christopher Doropoulos, Nicolas R. Evensen, Luis A. Gómez-Lemos, Russell C. Babcock
Software Mentions: 5
Published: over 9 years ago

10.1186/s40168-021-01009-w

Age and sex-associated variation in the multi-site microbiome of an entire social group of free-ranging rhesus macaques
Cited by: 35
Author(s): Mareike C. Janiak, Michael J. Montague, Catalina I. Villamil, Michala K. Stock, Amber E. Trujillo, Allegra N. DePasquale, Joseph D. Orkin, Samuel E. Bauman Surratt, Olga González, Michael L. Platt, Melween I. Martínez, Susan C. Antón, Maria Gloria Domínguez-Bello, Amanda D. Melin, James P. Higham
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.7850

Floral attraction and flower visitors of a subcanopy, tropical rainforest tree, Fontainea picrosperma
Cited by: 2
Author(s): Elektra L. Grant, Helen M. Wallace, Peter Brooks, Chris J. Burwell, Paul Reddell, Steven M. Ogbourne
Software Mentions: 5
Published: over 5 years ago

10.1186/s12866-016-0885-2

The highly variable microbiota associated to intestinal mucosa correlates with growth and hypoxia resistance of sea bass, Dicentrarchus labrax, submitted to different nutritional histories
Cited by: 41
Author(s): François-Joël Gatesoupe, Christine Huelvan, Nicolas Le Bayon, Hervé Le Delliou, Lauriane Madec, Olivier Mouchel, Patrick Quazuguel, David Mazurais, José‐Luis Zambonino-Infante
Software Mentions: 5
Published: almost 10 years ago

10.1002/ece3.3404

Pellets of proof: First glimpse of the dietary composition of adult odonates as revealed by metabarcoding of feces
Cited by: 62
Author(s): Kari Kaunisto, Tomas Roslin, Ilari E. Sääksjärvi, Eero J. Vesterinen
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-021-95360-5

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
Cited by: 5
Author(s): Ryohei Nakao, Ryutei Inui, Yoshihisa Akamatsu, Masuji Goto, Hideyuki Doi, Shiro Matsuoka
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-017-0237-y

Normalization and microbial differential abundance strategies depend upon data characteristics
Cited by: 1,253
Author(s): Sophie Weiss, Zhenjiang Zech Xu, Shyamal D. Peddada, Amir Almasi‐Hashiani, Kyle Bittinger, Antonio González, Catherine Lozupone, Jesse Zaneveld, Yoshiki Vázquez-Baeza, Amanda Birmingham, Embriette R. Hyde, Rob Knight
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0129323

Microclimatic Divergence in a Mediterranean Canyon Affects Richness, Composition, and Body Size in Saproxylic Beetle Assemblages
Cited by: 4
Author(s): Jörn Buse, Samuel Fassbender, Martin H. Entling, Tomáš Pavlı́ček
Software Mentions: 5
Published: over 11 years ago

10.3389/fpls.2019.00643

Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Cited by: 43
Author(s): Camille E. Defrenne, Timothy J. Philpott, Shannon H. A. Guichon, W. Jean Roach, Brian J. Pickles, Suzanne W. Simard
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2018.01001

Environmental Characteristics and Anthropogenic Impact Jointly Modify Aquatic Macrophyte Species Diversity
Cited by: 24
Author(s): Merja Elo, Janne Alahuhta, Antti Kanninen, Kristian Meissner, Katri Seppälä, Mikko Mönkkönen
Software Mentions: 5
Published: about 8 years ago

10.3389/fpls.2021.694727

The Plastid-Localized AtFtsHi3 Pseudo-Protease of Arabidopsis thaliana Has an Impact on Plant Growth and Drought Tolerance
Cited by: 3
Author(s): Laxmi S. Mishra, Sanatkumar Mishra, Daniel Caddell, Devin Coleman‐Derr, Christiane Funk
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01042-9

Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop
Cited by: 40
Author(s): Javier A. Ceja-Navarro, Wang Yuan, Daliang Ning, Abelardo Arellano, Leila Ramanculova, Mengting Yuan, Alyssa Byer, Kelly D. Craven, Malay C. Saha, Eoin L. Brodie, Jennifer Pett‐Ridge, Mary K. Firestone
Software Mentions: 5
Published: over 5 years ago

10.1186/s42523-019-0017-z

Development of the duodenal, ileal, jejunal and caecal microbiota in chickens
Cited by: 36
Author(s): Laura Glendinning, Kellie Watson, Michael Watson
Software Mentions: 5
Published: almost 7 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292