cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0181531

Response of Posidonia oceanica seagrass and its epibiont communities to ocean acidification
Cited by: 28
Author(s): Katja Guilini, Miriam Weber, Dirk de Beer, M. Schneider, Massimiliano Molari, Christian Lott, Wanda Bodnar, Thibaud Mascart, Marleen De Troch, Ann Vanreusel
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0146329

Agricultural Land Use Determines the Trait Composition of Ground Beetle Communities
Cited by: 41
Author(s): Helena I. Hanson, Erkki Palmu, Klaus Birkhofer, Henrik G. Smith, Katarina Hedlund
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0171352

Differences in gut microbiota profile between women with active lifestyle and sedentary women
Cited by: 305
Author(s): Carlo Bressa, María Bailén-Andrino, Jennifer Pérez-Santiago, Rocío González-Soltero, Margarita Pérez, Maria Gregoria Montalvo-Lominchar, José Luis Maté-Muñoz, Raúl Domínguez, Diego A. Moreno, Mar Larrosa
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0096358

An Invasive Vector of Zoonotic Disease Sustained by Anthropogenic Resources: The Raccoon Dog in Northern Europe
Cited by: 38
Author(s): Karmen Süld, Harri Valdmann, Leidi Laurimaa, Egle Soe, John Davison, Urmas Saarma
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0124162

Macroalgae Inhibits Larval Settlement and Increases Recruit Mortality at Ningaloo Reef, Western Australia
Cited by: 51
Author(s): Fiona J. Webster, Russell C. Babcock, M. van Keulen, N.R. Loneragan
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-64857-w

Long-term effects of straw return and straw-derived biochar amendment on bacterial communities in soil aggregates
Cited by: 32
Author(s): Naling Bai, Hanlin Zhang, Sheng Zhou, Huifeng Sun, Yanfang Zhao, Xianqing Zheng, Shuangxi Li, Juanqin Zhang, Wenzhen Lv
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0228171

Sugar, amino acid and inorganic ion profiling of the honeydew from different hemipteran species feeding on Abies alba and Picea abies
Cited by: 26
Author(s): Basel Shaaban, Victoria Seeburger, Annette Schroeder, Gertrud Lohaus
Software Mentions: 1
Published: over 6 years ago

10.1007/s11357-021-00375-5

Maternal stress programs a demasculinization of glutamatergic transmission in stress-related brain regions of aged rats
Cited by: 5
Author(s): Rémy Verhaeghe, Vance D. Gao, Sara Morley‐Fletcher, Hammou Bouwalerh, Gilles Van Camp, Francesca Cisani, Ferdinando Nicoletti, Stefania Maccari
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0091881

Similar Resilience Attributes in Lakes with Different Management Practices
Cited by: 24
Author(s): Didier L. Baho, Stina Drakare, Richard K. Johnson, Craig R. Allen, David G. Angeler
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0208281

Effects of acute exposures of 2,4,6-trinitrotoluene and inorganic lead on the fecal microbiome of the green anole (Anolis carolinensis)
Cited by: 7
Author(s): Karl J. Indest, Steven Everman, James H. Lindsay, Carina M. Jung, Jennifer M. Smith, Sandra B. Newell
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/gix050

Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients
Cited by: 57
Author(s): Qing-Yu He, Yuan Gao, Zhuye Jie, Xinlei Yu, Janne Marie Laursen, Liang Xiao, Ying Liu, Lingling Li, Faming Zhang, Qiang Feng, Xiaoping Li, Jinghong Yu, Chuan Liu, Ping Lan, Ting Yan, Xin Liu, Xun Xu, Huanming Yang, Jian Wang, Lise Madsen, Susanne Brix, Jianping Wang, Karsten Kristiansen, Huijue Jia
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0091841

Large-Scale Assessment of Mediterranean Marine Protected Areas Effects on Fish Assemblages
Cited by: 139
Author(s): Paolo Guidetti, Pasquale Baiata, Enric Ballesteros, Antonio Franco, Bernat Hereu, Enrique Macpherson, Fiorenza Micheli, António Pais, Pieraugusto Panzalis, Andrew A. Rosenberg, Michel Zabala, Enric Sala
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0153192

Using Stable Isotopes to Infer the Impacts of Habitat Change on the Diets and Vertical Stratification of Frugivorous Bats in Madagascar
Cited by: 12
Author(s): Kim E. Reuter, Abigail R. Wills, Raymond W. Lee, Erik E. Cordes, Brent J. Sewall
Software Mentions: 1
Published: over 10 years ago

10.1093/gigascience/gix089

Taxonomic structure and functional association of foxtail millet root microbiome
Cited by: 147
Author(s): Tao Jin, Yayu Wang, Huang Yue-ying, Jin Xu, Pengfan Zhang, Nian Wang, Xin Liu, Haiyan Chu, Guang Liu, Honggang Jiang, Yuzhen Li, Jing Xu, Karsten Kristiansen, Liang Xiao, Yunzeng Zhang, Gengyun Zhang, Guohua Du, Houbao Zhang, Hong-Feng Zou, Haifeng Zhang, Zhuye Jie, Suisha Liang, Huijue Jia, Jingwang Wan, Dechun Lin, Jinying Li, Guangyi Fan, Huanming Yang, Jian Wang, Yang Bai, Xun Xu
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0205075

Passive acoustics and sound recognition provide new insights on status and resilience of an iconic endangered marsupial (koala Phascolarctos cinereus) to timber harvesting
Cited by: 25
Author(s): Bradley Law, Traecey Brassil, Leroy Gonsalves, Paul Roe, Anthony Truskinger, Anna McConville
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0143637

Infaunal Benthic Communities from the Inner Shelf off Southwestern Africa Are Characterised by Generalist Species
Cited by: 3
Author(s): Nina Steffani, Safiyya Sedick, John C. Rogers, Mark J. Gibbons
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-64797-5

Synergistic depletion of gut microbial consortia, but not individual antibiotics, reduces amyloidosis in APPPS1-21 Alzheimer’s transgenic mice
Cited by: 47
Author(s): Hemraj B. Dodiya, Mary Frith, Ashley M. Sidebottom, Yajun Cao, Jason C. Koval, Eugene B. Chang, Sangram S. Sisodia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0019082

Induction of Larval Metamorphosis of the Coral Acropora millepora by Tetrabromopyrrole Isolated from a Pseudoalteromonas Bacterium
Cited by: 177
Author(s): Jan Tebben, Dianne M. Tapiolas, Cherie A. Motti, David Abrego, Andrew P. Negri, Linda L. Blackall, Peter D. Steinberg, Tilmann Harder
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0237335

Combining physicochemical properties and microbiome data to evaluate the water quality of South African drinking water production plants
Cited by: 10
Author(s): Tawanda Elias Maguvu, Cornelius Carlos Bezuidenhout, Rinaldo K Kritzinger, Karabo Tsholo, Moitshepi Plaatjie, Lesego Molale-Tom, Charlotte Mienie, Roelof Dirk Coertze
Software Mentions: 1
Published: about 6 years ago

10.1111/geb.12783

Traditional plant functional groups explain variation in economic but not size‐related traits across the tundra biome
Cited by: 45
Author(s): Haydn J. D. Thomas, Isla H. Myers‐Smith, Anne D. Bjorkman, Sarah C. Elmendorf, Daan Blok, Johannes H. C. Cornelissen, Bruce C. Forbes, Robert D. Hollister, Signe Normand, Janet S. Prevéy, Christian Rixen, Gabriela Schaepman‐Strub, Martin Wilmking, Sonja Wipf, William K. Cornwell, Jens Kattge, Scott J. Goetz, Kevin C. Guay, Juha M. Alatalo, Alba Anadon‐Rosell, Sandra Angers‐Blondin, L. T. Berner, Robert G. Björk, Agata Buchwał, Allan Buras, Michele Carbognani, Katie Christie, Laura Siegwart Collier, Elisabeth J. Cooper, Anu Eskelinen, Esther R. Frei, Oriol Grau, Paul Grogan, Martin Hallinger, M.M.P.D. Heijmans, Luise Hermanutz, James M. Hudson, Karl Hülber, Maitane Iturrate‐Garcia, Colleen M. Iversen, Francesca Jaroszynska, Jill F. Johnstone, Elina Kaarlejärvi, Aino Kulonen, Laurent J. Lamarque, Esther Lévesque, Chelsea J. Little, Anders Michelsen, Ann Milbau, Jacob Nabe‐Nielsen, Sigrid Schøler Nielsen, Josep M. Ninot, Steven F. Oberbauer, Johan Olofsson, В. Г. Онипченко, Alessandro Petraglia, Sabine B. Rumpf, Philipp Semenchuk, Nadejda A. Soudzilovskaia, Marko J. Spasojevic, James D. M. Speed, Ken D. Tape, Mariska te Beest, Marcello Tomaselli, Andrew J. Trant, Urs A. Treier, Susanna Venn, Tage Vowles, Stef Weijers, Tara Zamin, Owen K. Atkin, Michael Bahn, Benjamin Blonder, Giandiego Campetella, Bruno E. L. Cerabolini, F. Stuart Chapin, Matteo Dainese, Franciska T. de Vries, Sandra Dı́az, W. Green, Robert B. Jackson, Peter Manning, Ülo Niinemets, Wim A. Ozinga, Josep Peñuelas, Peter B. Reich, Brandon S. Schamp, Serge Sheremetiev, Peter M. van Bodegom
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0028054

Do Cues Matter? Highly Inductive Settlement Cues Don't Ensure High Post-Settlement Survival in Sea Urchin Aquaculture
Cited by: 52
Author(s): Benjamin Mos, Kenneth Lawrence Cowden, Shaun Nielsen, Symon A. Dworjanyn
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0196581

Effect of land use and soil organic matter quality on the structure and function of microbial communities in pastoral soils: Implications for disease suppression
Cited by: 32
Author(s): Bryony E.A. Dignam, Maureen O’Callaghan, Leo M. Condron, George A. Kowalchuk, Joy D. Van Nostrand, Jizhong Zhou, Steven A. Wakelin
Software Mentions: 1
Published: over 8 years ago

10.1080/19490976.2020.1785251

Changes in the fecal bacterial microbiota associated with disease severity in alcoholic hepatitis patients
Cited by: 52
Author(s): Sonja Lang, Bradley Fairfied, Bei Gao, Yi Duan, Xinlian Zhang, Derrick E. Fouts, Bernd Schnabl
Software Mentions: 1
Published: about 6 years ago

10.1080/19490976.2020.1758290

The protective effect of Bifidobacterium bifidum G9-1 against mucus degradation by Akkermansia muciniphila following small intestine injury caused by a proton pump inhibitor and aspirin
Cited by: 38
Author(s): Tsutomu Yoshihara, Yosuke Oikawa, Takayuki Kato, Takaomi Kessoku, Takashi Kobayashi, Shingo Kato, Noboru Misawa, Keiichi Ashikari, Akiko Fuyuki, Hidenori Ohkubo, Takuma Higurashi, Yoko Tateishi, Yoshiki Tanaka, Shunji Nakajima, Hiroshi Ohno, Koichiro Wada, Atsushi Nakajima
Software Mentions: 1
Published: about 6 years ago

10.1080/19490976.2020.1830694

Characterization of the intestinal microbiota during Citrobacter rodentium infection in a mouse model of infection-triggered Parkinson’s disease
Cited by: 11
Author(s): Tyler Cannon, Anshul Sinha, Louis-Éric Trudeau, Corinne F. Maurice, Samantha Gruenheid
Software Mentions: 1
Published: almost 6 years ago

10.1080/19490976.2020.1826747

Influence of probiotic supplementation on the developing microbiota in human preterm neonates
Cited by: 24
Author(s): Niels van Best, Sonja Trepels-Kottek, Paul H. M. Savelkoul, Thorsten Orlikowsky, Mathias W. Hornef, John Penders
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0098975

Multiple Ant Species Tending Lac Insect Kerria yunnanensis (Hemiptera: Kerriidae) Provide Asymmetric Protection against Parasitoids
Cited by: 2
Author(s): Youqing Chen, Lu Zhixing, Lingling Qiao, Benjamin D. Hoffmann, Wei Zhang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0185620

Cryptic effects of biological invasions: Reduction of the aggressive behaviour of a native fish under the influence of an “invasive” biomolecule
Cited by: 15
Author(s): Laura Magliozzi, Vítor Carvalho Almada, Joana Isabel Robalo, Ernesto Mollo, Gianluca Polese, Emanuel João Gonçalves, Serena Felline, Antonio Terlizzi, Biagio D’Aniello
Software Mentions: 1
Published: almost 9 years ago

10.1080/19490976.2020.1840766

Host miRNA-21 promotes liver dysfunction by targeting small intestinal Lactobacillus in mice
Cited by: 22
Author(s): Andrea M. Santos, Marta B. Afonso, Ricardo S. Ramiro, David Pires, Madalena Pimentel, Rui E. Castro, Cecília M. P. Rodrigues
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0195167

First quantification of subtidal community structure at Tristan da Cunha Islands in the remote South Atlantic: from kelp forests to the deep sea
Cited by: 13
Author(s): Jennifer E. Caselle, Scott L. Hamilton, Kathryn Davis, Chris Thompson, Alan Turchik, Ryan S. Jenkinson, Doug Simpson, Enric Sala
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0184100

Epibenthic and mobile species colonisation of a geotextile artificial surf reef on the south coast of England
Cited by: 15
Author(s): Roger J.H. Herbert, K.J. Collins, J.J. Mallinson, Alice Hall, Josephine Pegg, Kathryn Ross, Leo J. Clarke, Tom Clements
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0101388

Eutrophication and Dreissena Invasion as Drivers of Biodiversity: A Century of Change in the Mollusc Community of Oneida Lake
Cited by: 14
Author(s): Vadim A. Karatayev, Alexander Y. Karatayev, Lyubov E. Burlakova, Lars G. Rudstam
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-020-73702-z

Diel vertical migration into anoxic and high-pCO2 waters: acoustic and net-based krill observations in the Humboldt Current
Cited by: 11
Author(s): Ramiro Riquelme‐Bugueño, Iván Pérez-Santos, Nicolás Alegría, Cristian A. Vargas, Mauricio A. Urbina, Rubén Escribano
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0148922

Chemical Tools of Octopus maya during Crab Predation Are Also Active on Conspecifics
Cited by: 14
Author(s): Dawrin Pech-Puch, Honorio Cruz-López, Cindy Canche-Ek, Gabriela Campos-Espinosa, Elpidio García, Maité Mascaró, Carlos Rosas, Daniel Chávez‐Velasco, Sergio Rodrı́guez-Morales
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0159131

Temporal and Spatial Variation of Soil Bacteria Richness, Composition, and Function in a Neotropical Rainforest
Cited by: 24
Author(s): Stephanie N. Kivlin, Christine V. Hawkes
Software Mentions: 1
Published: about 10 years ago

10.1080/19490976.2020.1865708

Microbial and metabolic features associated with outcome of infliximab therapy in pediatric Crohn’s disease
Cited by: 48
Author(s): Yizhong Wang, Xuefeng Gao, Xinyue Zhang, Fangfei Xiao, Hui Hu, Xiaolu Li, Fajin Dong, Mingming Sun, Yunfeng Xiao, Ting Ge, Dan Li, Guangjun Yu, Zhanju Liu, Ting Zhang
Software Mentions: 1
Published: over 5 years ago

10.1080/19490976.2020.1866974

Role of gut microbiota in regulating gastrointestinal dysfunction and motor symptoms in a mouse model of Parkinson’s disease
Cited by: 49
Author(s): Yogesh Bhattarai, Jie Song, Meng Pu, Owen A. Ross, Pamela J. McLean, Lisa Till, William Moor, Madhusudan Grover, Karunya K. Kandimalla, Kara Gross Margolis, Gianrico Farrugia, Purna C. Kashyap
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0200960

Drivers of reef shark abundance and biomass in the Solomon Islands
Cited by: 17
Author(s): Jordan Goetze, Tim Langlois, Joe McCarter, Colin A. Simpfendorfer, Alec Hughes, Jacob Tingo Leve, Stacy D. Jupiter
Software Mentions: 1
Published: about 8 years ago

10.1080/19490976.2021.1887721

Dietary vitamin K is remodeled by gut microbiota and influences community composition
Cited by: 52
Author(s): Jessie L Ellis, J Philip Karl, Angela M. Oliverio, Xueyan Fu, Jason W. Soares, Benjamin E. Wolfe, Christopher J. Hernandez, Joel B. Mason, Sarah L. Booth
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0076441

Tolerance of Sponge Assemblages to Temperature Anomalies: Resilience and Proliferation of Sponges following the 1997–8 El-Niño Southern Oscillation
Cited by: 37
Author(s): Francisco Kelmo, James J. Bell, Martin J. Attrill
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0092384

Isotopes and Trace Elements as Natal Origin Markers of Helicoverpa armigera – An Experimental Model for Biosecurity Pests
Cited by: 33
Author(s): Peter Holder, Karen Armstrong, Robert Van Hale, Marc-Alban Millet, Russell Frew, Tim J. Clough, Joel A. Baker
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-020-76858-w

Seasonal patterns in stable isotope and fatty acid profiles of southern stingrays (Hypanus americana) at Stingray City Sandbar, Grand Cayman
Cited by: 3
Author(s): Lisa A. Hoopes, Tonya M. Clauss, Nicole E. Browning, Alexa J. Delaune, Bradley M. Wetherbee, Jessica C. Harvey, Guy Harvey
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-74379-0

Prebiotic effects of yeast mannan, which selectively promotes Bacteroides thetaiotaomicron and Bacteroides ovatus in a human colonic microbiota model
Cited by: 30
Author(s): Shunsuke Oba, Tadahiro Sunagawa, Reiko Tanihiro, Kyoko Awashima, Hiroshi Sugiyama, Tetsuji Odani, Yasunori Nakamura, Akihiko Kondo, Daisuke Sasaki, Kengo Sasaki
Software Mentions: 1
Published: almost 6 years ago

10.1080/19490976.2021.1908100

Development of gut microbiota and bifidobacterial communities of neonates in the first 6 weeks and their inheritance from mother
Cited by: 7
Author(s): Bo Yang, Mengfan Ding, Yingqi Chen, Fengzhen Han, Chun-yan Yang, Jianxin Zhao, Patrice Malard, Catherine Stanton, R. Paul Ross, Hao Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0163717

The Bacterial Signature of Leptospermum scoparium (Mānuka) Reveals Core and Accessory Communities with Bioactive Properties
Cited by: 24
Author(s): Wisnu Adi Wicaksono, E. Eirian Jones, Jana Monk, Hayley J. Ridgway
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0187852

The abundance of health-associated bacteria is altered in PAH polluted soils—Implications for health in urban areas?
Cited by: 37
Author(s): Nan Hui, Mira Grönroos, Sari Kauppi, Tomasz Płociniczak, Marja I. Roslund, Polina Galitskaya, Olli H. Laitinen, Heikki Hyöty, Ari Jumpponen, Rauni Strömmer, Martin Romantschuk, Nan Hui, Aki Sinkkonen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0239051

The red flour beetle Tribolium castaneum: A model for host-microbiome interactions
Cited by: 5
Author(s): Aparna Agarwal, Deepa Agashe
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0169049

Assessment and Characterisation of Ireland's Green Tides (Ulva Species)
Cited by: 51
Author(s): Alex H. L. Wan, Robert Wilkes, Svenja Heesch, Ricardo Bermejo, Mark P. Johnson, Liam Morrison
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0022396

Oyster Reefs as Natural Breakwaters Mitigate Shoreline Loss and Facilitate Fisheries
Cited by: 259
Author(s): Steven B. Scyphers, Sean P. Powers, Kenneth L. Heck, Dorothy Byron
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0096659

Lactobacillus crispatus Dominant Vaginal Microbiome Is Associated with Inhibitory Activity of Female Genital Tract Secretions against Escherichia coli
Cited by: 80
Author(s): Jeny Ghartey, Benjamin Smith, Zigui Chen, Niall Buckley, Yungtai Lo, Adam J. Ratner, Betsy C. Herold, Robert D. Burk
Software Mentions: 1
Published: over 12 years ago

10.1080/19490976.2021.1930871

Inter-kingdom relationships in Crohn’s disease explored using a multi-omics approach
Cited by: 13
Author(s): Alessandra Frau, Umer Zeeshan Ijaz, Rachael Slater, Daisy Jonkers, John Penders, Barry J. Campbell, John Kenny, Neil Hall, Luca Lenzi, Michael D. Burkitt, Marieke Pierik, Alistair C. Darby, Chris Probert
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0082229

Predation Limits Spread of Didemnum vexillum into Natural Habitats from Refuges on Anthropogenic Structures
Cited by: 38
Author(s): Barrie M. Forrest, Lauren Fletcher, Javier Atalah, Richard F. Piola, Grant A. Hopkins
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0170622

Longitudinal assessment of sputum microbiome by sequencing of the 16S rRNA gene in non-cystic fibrosis bronchiectasis patients
Cited by: 92
Author(s): Michael J. Cox, Elena Turek, Catherine Hennessy, Ghazala Mirza, Phillip James, Meg Coleman, Andrew Jones, Robert Wilson, Diana Bilton, William Cookson, Miriam F. Moffatt, Michael R. Loebinger
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0255633

Microbial communities of poultry house dust, excreta and litter are partially representative of microbiota of chicken caecum and ileum
Cited by: 17
Author(s): Yugal Raj Bindari, Robert J. Moore, Thi Thu Hao Van, Matthew Hilliar, Shu‐Biao Wu, Stephen W. Walkden‐Brown, Priscilla F. Gerber
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-65277-6

Novel cultivated endophytic Verrucomicrobia reveal deep-rooting traits of bacteria to associate with plants
Cited by: 28
Author(s): Wiebke Bünger, Xun Jiang, Jana Müller, Thomas Hurek, Barbara Reinhold‐Hurek
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0042810

Denitrification and Anammox in Tropical Aquaculture Settlement Ponds: An Isotope Tracer Approach for Evaluating N2 Production
Cited by: 24
Author(s): Sarah Castine, Dirk V. Erler, Lindsay Trott, Nicholas A. Paul, Rocky de Nys, Bradley D. Eyre
Software Mentions: 1
Published: almost 14 years ago

10.1080/19490976.2021.1961203

Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California
Cited by: 23
Author(s): Tanya L. Alderete, Roshonda B. Jones, Justin P. Shaffer, Elizabeth A. Holzhausen, William B. Patterson, Sayed Hossein Davoodi, Lida Chatzi, Rob Knight, Jasmine F. Plows, Paige K. Berger, Michael I. Goran
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0144204

Context-Dependent Diversity-Effects of Seaweed Consumption on Coral Reefs in Kenya
Cited by: 14
Author(s): Austin T. Humphries, Christopher D. McQuaid, Tim R. McClanahan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0064133

Home Life: Factors Structuring the Bacterial Diversity Found within and between Homes
Cited by: 266
Author(s): Robert R. Dunn, Noah Fierer, Jessica B. Henley, Jonathan W. Leff, Holly L. Menninger
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0238173

Changes in reflectance of rice seedlings during planthopper feeding as detected by digital camera: Potential applications for high-throughput phenotyping
Cited by: 6
Author(s): Finbarr G. Horgan, Artzai Jauregui, Ainara Peñalver‐Cruz, Eduardo Crisol‐Martínez, Carmencita C. Bernal
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0254172

In-vivo impact of common cosmetic preservative systems in full formulation on the skin microbiome
Cited by: 7
Author(s): Barry Murphy, Michael Hoptroff, David H. Arnold, Richard Eccles, Stuart Campbell-Lee
Software Mentions: 1
Published: about 5 years ago

10.1080/19490976.2021.1984105

Colonic expression of Ace2, the SARS-CoV-2 entry receptor, is suppressed by commensal human microbiota
Cited by: 15
Author(s): Adam Edwinson, Lu Yang, Jun Chen, Madhusudan Grover
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0109280

In Situ Mortality Experiments with Juvenile Sea Bass (Dicentrarchus labrax) in Relation to Impulsive Sound Levels Caused by Pile Driving of Windmill Foundations
Cited by: 15
Author(s): E. Debusschere, Bert De Coensel, Anna Bajek, Dick Botteldooren, Kristian Hostens, Jan Vanaverbeke, Sofie Vandendriessche, K. Van Ginderdeuren, Magda Vincx, S. Degraer
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13099-016-0143-z

Effect of antibiotic pre-treatment and pathogen challenge on the intestinal microbiota in mice
Cited by: 18
Author(s): Tadasu Iizumi, Takako Taniguchi, Wataru Yamazaki, Géraldine Vilmen, Alexander V. Alekseyenko, Zhan Gao, Guillermo I. Perez-Perez, Martin J. Blaser
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13099-016-0149-6

Impacts of resistant starch and wheat bran consumption on enteric inflammation in relation to colonic bacterial community structures and short-chain fatty acid concentrations in mice
Cited by: 49
Author(s): Janelle A. Jiminez, Trina C. Uwiera, D. Wade Abbott, Richard R. E. Uwiera, G. Douglas Inglis
Software Mentions: 1
Published: over 9 years ago

10.1186/s13099-017-0208-7

A human stool-derived Bilophila wadsworthia strain caused systemic inflammation in specific-pathogen-free mice
Cited by: 102
Author(s): Feng Zhou, Wenmin Long, Binhan Hao, Ding Ding, Xinrong Ma, Liping Zhao, Xiaoyan Pang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0168196

Seasonal Variations in Surface Metabolite Composition of Fucus vesiculosus and Fucus serratus from the Baltic Sea
Cited by: 20
Author(s): Esther Rickert, Martin Wahl, Heike Link, Hannes Richter, Georg Pohnert
Software Mentions: 1
Published: over 9 years ago

10.1186/s13099-021-00411-x

Microbiome profiling of rotavirus infected children suffering from acute gastroenteritis
Cited by: 8
Author(s): Muhammad Sohail, Hebah A. Al-Khatib, Asmaa A. Al Thani, Khalid Al Ansari, Hadi M. Yassine, Maha Al-Asmakh
Software Mentions: 1
Published: over 5 years ago

10.1111/hel.12567

Helicobacter pylori infection alters gastric and tongue coating microbial communities
Cited by: 58
Author(s): Zhao Yan, Xuefeng Gao, Jun Guo, Dongbao Yu, Ying Xiao, Wang Hui-jie, Yuchan Li
Software Mentions: 1
Published: over 7 years ago

10.1016/j.heliyon.2018.e00915

Limited added value of fungal ITS amplicon sequencing in the study of bovine abortion
Cited by: 3
Author(s): Sara Vidal, Bernd W. Brandt, Martina Dettwiler, Carlos Abril, Jenny Bressan, Gilbert Greub, Claude Frey, Vincent Perreten, Sabrina Rodriguez‐Campos
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.heliyon.2021.e07413

Stable isotopes and community surveys reveal differential use of artificial and natural reefs by South Florida fishes
Cited by: 2
Author(s): Christopher A. Blanar, Joseph R. Hornbeck, David W. Kerstetter, Amy Hirons
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-74670-0

Differential processing of dissolved and particulate organic matter by deep-sea sponges and their microbial symbionts
Cited by: 26
Author(s): Martijn C. Bart, A. de Kluijver, Sean Hoetjes, Samira Absalah, Benjamin Mueller, Ellen Kenchington, Hans Tore Rapp, Jasper M. de Goeij
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0115225

The Antipsychotic Olanzapine Interacts with the Gut Microbiome to Cause Weight Gain in Mouse
Cited by: 135
Author(s): Andrew P. Morgan, James J. Crowley, Randal J. Nonneman, Corey R. Quackenbush, Cheryl N. Miller, Allison Ryan, Molly A. Bogue, Sur Herrera Paredes, Scott Yourstone, Ian M. Carroll, Thomas H. Kawula, Maureen A. Bower, R. Balfour Sartor, Patrick F. Sullivan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0171910

Diatoms on the carapace of common snapping turtles: Luticola spp. dominate despite spatial variation in assemblages
Cited by: 11
Author(s): Shelly Wu, Elizabeth A. Bergey
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0211673

Towards a sampling design for characterizing habitat-specific benthic biodiversity related to oxygen flux dynamics using Aquatic Eddy Covariance
Cited by: 19
Author(s): Iván F. Rodil, Karl M. Attard, Joanna Norkko, Ronnie N. Glud, Alf Norkko
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0074077

Are Hotspots Always Hotspots? The Relationship between Diversity, Resource and Ecosystem Functions in the Arctic
Cited by: 39
Author(s): Heike Link, Dieter Piepenburg, Philippe Archambault
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0182271

Temporal dynamics of in-situ fiber-adherent bacterial community under ruminal acidotic conditions determined by 16S rRNA gene profiling
Cited by: 11
Author(s): Renée M. Petri, P. Pourazad, Ratchaneewan Khiaosa‐ard, Fenja Klevenhusen, Barbara U. Metzler‐Zebeli, Qendrim Zebeli
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0123020

Control of Origin of Sesame Oil from Various Countries by Stable Isotope Analysis and DNA Based Markers—A Pilot Study
Cited by: 22
Author(s): Micha Horacek, Karin Hansel-Hohl, K. Burg, Gerhard Soja, Walter Okello-Anyanga, Silvia Fluch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0220130

Acidification-induced cellular changes in Symbiodinium isolated from Mussismilia braziliensis
Cited by: 4
Author(s): Lilian Jorge Hill, Wladimir Costa Paradas, Maria Julia Willemes, Miria G. Pereira, Paulo S. Salomon, Rodrigo Mariath, Rodrigo L. Moura, Geórgia C. Atella, Marcos Farina, Gilberto M. Amado‐Filho, Leonardo T. Salgado
Software Mentions: 1
Published: about 7 years ago

10.3390/insects6010141

Foliar Substrate Affects Cuticular Hydrocarbon Profiles and Intraspecific Aggression in the Leafcutter Ant Atta sexdens
Cited by: 9
Author(s): Lohan Valadares, Daniela Lima do Nascimento, Fábio Santos do Nascimento
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-020-64961-x

Autologous fecal transplantation from a lean state potentiates caloric restriction effects on body weight and adiposity in obese mice
Cited by: 23
Author(s): Patricia Pérez-Matute, María Íñiguez, María de Toro, Emma Recio-Fernández, José A. Oteo
Software Mentions: 1
Published: about 6 years ago

10.3390/insects9020046

Entomofauna Associated with Agroforestry Systems of Timber Species and Cacao in the Southern Region of the Maracaibo Lake Basin (Mérida, Venezuela)
Cited by: 3
Author(s): Marina Mazón, Daniel Sánchez-Angarita, Francisco Díaz, Néstor Gutiérrez, Ramón E. Jaimez
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-66364-4

Rapeseed-based diet modulates the imputed functions of gut microbiome in growing-finishing pigs
Cited by: 11
Author(s): Özgün Candan Onarman Umu, Liv Torunn Mydland, Margareth Øverland, Charles McL. Press, Henning Sørum
Software Mentions: 1
Published: about 6 years ago

10.3390/insects10010029

Distributions of Invasive Arthropods across Heterogeneous Urban Landscapes in Southern California: Aridity as a Key Component of Ecological Resistance
Cited by: 5
Author(s): Weston J. Staubus, Savanah Bird, Savannah Meadors, Wallace M. Meyer
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0029359

Metabolomic Assessment of Induced and Activated Chemical Defence in the Invasive Red Alga Gracilaria vermiculophylla
Cited by: 92
Author(s): Göran M. Nylund, Florian Weinberger, Martin Rempt, Georg Pohnert
Software Mentions: 1
Published: over 14 years ago

10.3390/insects10050130

Hygiene Defense Behaviors Used by a Fungus-Growing Ant Depend on the Fungal Pathogen Stages
Cited by: 8
Author(s): Ernesto Bonadies, William T. Wcislo, Dumas Gálvez, William O. H. Hughes, Hermógenes Fernández‐Marín
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0090542

From Trap to Nursery. Mitigating the Impact of an Artisanal Fishery on Cuttlefish Offspring
Cited by: 19
Author(s): Valentina Melli, Emilio Riginella, Marco Aurélio Nalon, Carlotta Mazzoldi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0016357

Characteristics of the Mesophotic Megabenthic Assemblages of the Vercelli Seamount (North Tyrrhenian Sea)
Cited by: 123
Author(s): Marzia Bo, Marco Bertolino, Mireno Borghini, Michela Castellano, Anabella Covazzi Harriague, Cristina Gioia Di Camillo, G.P. Gasparini, Cristina Misic, Paolo Pedrini, Antonio Pusceddu, Katrin Schröeder, Giorgio Bavestrello
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0066665

Evaluation of Common Methods for Sampling Invertebrate Pollinator Assemblages: Net Sampling Out-Perform Pan Traps
Cited by: 87
Author(s): Tony J. Popic, Yvonne C. Davila, Glenda M. Wardle
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0084739

Flood Impacts in Keppel Bay, Southern Great Barrier Reef in the Aftermath of Cyclonic Rainfall
Cited by: 50
Author(s): Alison Jones, Ray Berkelmans
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0063693

Temporal Variations in Metabolic and Autotrophic Indices for Acropora digitifera and Acropora spicifera – Implications for Monitoring Projects
Cited by: 3
Author(s): Saskia Hinrichs, Nicole L. Patten, Anya M. Waite
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-66658-7

A longitudinal study of the development of the saliva microbiome in infants 2 days to 5 years compared to the microbiome in adolescents
Cited by: 34
Author(s): Pernilla Lif Holgerson, Anders Esberg, Andreas Sjödin, Christina West, Ingegerd Johansson
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-66654-x

Taxonomic diversity of sputum microbiome in lung cancer patients and its relationship with chromosomal aberrations in blood lymphocytes
Cited by: 14
Author(s): В. Г. Дружинин, Liudmila Matskova, П. С. Деменков, Е. Д. Баранова, Valentin P. Volobaev, В. И. Минина, Svetlana V. Apalko, М. А. Чурина, Sofya A. Romanyuk, С. Г. Щербак, В А Иванов, А. В. Ларионов
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0146053

Quantifying the Adaptive Cycle
Cited by: 23
Author(s): David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance Gunderson, Olle Hjerne, Monika Winder
Software Mentions: 1
Published: over 10 years ago

10.3390/insects11040238

Behavioral and Electrophysiological Responses of the Fringed Larder Beetle Dermestes frischii to the Smell of a Cadaver at Different Decomposition Stages
Cited by: 5
Author(s): Clément Martin, Damien Minchilli, Frédéric Francis, François Verheggen
Software Mentions: 1
Published: over 6 years ago

10.3390/insects11040226

Changing Microarthropod Communities in Front of a Receding Glacier in the High Arctic
Cited by: 10
Author(s): Dariusz J. Gwiazdowicz, Bogna Zawieja, Izabella Olejniczak, Piotr Skubała, Anna K. Gdula, Stephen J. Coulson
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0075873

Spatial and Temporal Patterns of Eastern Australia Subtropical Coral Communities
Cited by: 23
Author(s): Steven Dalton, George Roff
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0130116

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation
Cited by: 48
Author(s): Maryam Yazdani Foshtomi, Ulrike Braeckman, Sofie Derycke, Melanie Sapp, D. Van Gansbeke, Koen Sabbe, Anne Willems, Magda Vincx, Jan Vanaverbeke
Software Mentions: 1
Published: about 11 years ago

10.3390/insects11060376

Bacterial Communities Associated with the Pine Wilt Disease Insect Vector Monochamus alternatus (Coleoptera: Cerambycidae) during the Larvae and Pupae Stages
Cited by: 17
Author(s): Hongjian Chen, Dejun Hao, Zhiqiang Wei, Lujie Wang, Tao Lin
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0166679

The Farther the Better: Effects of Multiple Environmental Variables on Reef Fish Assemblages along a Distance Gradient from River Influences
Cited by: 19
Author(s): Leonardo Mitrano Neves, Tatiana P. Teixeira-Neves, Guilherme H. Pereira-Filho, Francisco Gerson Araújo
Software Mentions: 1
Published: over 9 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292