cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1128/mBio.01470-19

Statistical Analysis of Community RNA Transcripts between Organic Carbon and Geogas-Fed Continental Deep Biosphere Groundwaters
Cited by: 6
Author(s): Margarita López-Fernández, Elias Broman, Domenico Simone, Stefan Bertilsson, Mark Dopson
Software Mentions: 1
Published: about 5 years ago

10.1002/ece3.4339

The effect of habitat fragmentation on the bee visitor assemblages of three Australian tropical rainforest tree species
Cited by: 17
Author(s): Tobias J. Smith, Margaret M. Mayfield
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.6777

Sweet tooth: Elephants detect fruit sugar levels based on scent alone
Cited by: 16
Author(s): Omer Nevo, Melissa H. Schmitt, Manfred Ayasse, Kim Valenta
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.01733-19

Changes in Aphid Host Plant Diet Influence the Small-RNA Expression Profiles of Its Obligate Nutritional Symbiont, <i>Buchnera</i>
Cited by: 9
Author(s): Margaret W. Thairu, Allison K. Hansen
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0255137

Shift of bacterial communities in heavy metal-contaminated agricultural land during a remediation process
Cited by: 18
Author(s): Chi‐Chun Huang, Chen-Jui Liang, Ting-I Yang, Jiann‐Long Chen, Wei-Kuang Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21207508

m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms
Cited by: 8
Author(s): Miriam Ruocco, Luca Ambrosino, Marlene Jahnke, Maria Luisa Chiusano, Isabel Barrote, Gabriele Procaccini, João Silva, Emanuela Dattolo
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.4991

Small mammal herbivores mediate the effects of soil nitrogen and invertebrate herbivores on grassland diversity
Cited by: 10
Author(s): Nicole Poe, Katharine L. Stuble, Lara Souza
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0214660

High intensity interval training promotes total and visceral fat mass loss in obese Zucker rats without modulating gut microbiota
Cited by: 26
Author(s): Florie Maillard, Emilie Vazeille, Pierre Sauvanet, Pascal Sirvent, Lydie Combaret, Antoine Sourdrille, Vivien Chavanelle, Richard Bonnet, Yolanda F. Otero, Geoffrey Delcros, Nicolas Barnich, Nathalie Boisseau
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0100276

The Relationship between Early Growth and Survival of Hatchling Saltwater Crocodiles (Crocodylus porosus) in Captivity
Cited by: 16
Author(s): Matthew L. Brien, Grahame J. W. Webb, Keith A. McGuinness, Keith A. Christian
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0239895

Spatial patterns of continental shelf faunal community structure along the Western Antarctic Peninsula
Cited by: 10
Author(s): Alan M. Friedlander, Whitney Goodell, Pelayo Salinas‐de‐León, Enric Ballesteros, Eric Berkenpas, Andrea P Capurro, César Cárdenas, Mathias Hüne, Cristian Lagger, Mauricio F. Landaeta, Alex Muñoz, Mercedes Santos, Alan Turchik, Rodolfo Werner, Enric Sala
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.2323

Positive and negative effects of mesograzers on early‐colonizing species in an intertidal rocky‐shore community
Cited by: 20
Author(s): Daniela Tejada-Martínez, Daniela N. López, César C. Bonta, Roger D. Sepúlveda, Nelson Valdivia
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.6861

Field‐based individual plant phenotyping of herbaceous species by unmanned aerial vehicle
Cited by: 9
Author(s): Wei Guo, Yuya Fukano, Koji Noshita, S. Ninomiya
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0075710

Developmental Stage of Parasites Influences the Structure of Fish-Parasite Networks
Cited by: 38
Author(s): Sybelle Bellay, Edson Fontes de Oliveira, Mário Almeida‐Neto, Dilermando P. Lima-Júnior, Ricardo Massato Takemoto, José L. Luque
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0225079

Comparison of the fecal, cecal, and mucus microbiome in male and female mice after TNBS-induced colitis
Cited by: 54
Author(s): Ariangela J. Kozik, Cindy H. Nakatsu, Hyonho Chun, Yava Jones‐Hall
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21228733

Connection between the Gut Microbiome, Systemic Inflammation, Gut Permeability and FOXP3 Expression in Patients with Primary Sjögren’s Syndrome
Cited by: 33
Author(s): Antonio Cano-Ortiz, Aurora Laborda-Illanes, Isaac Plaza-Andrades, Alberto Membrillo del Pozo, Alberto Villarrubia, Marina Rodríguez‐Calvo‐de‐Mora, Isabel Leiva-Gea, Lidia Sánchez-Alcoholado, María Isabel Queipo-Ortuño
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21238946

The Gut-Muscle Axis in Older Subjects with Low Muscle Mass and Performance: A Proof of Concept Study Exploring Fecal Microbiota Composition and Function with Shotgun Metagenomics Sequencing
Cited by: 51
Author(s): Andrea Ticinesi, Leonardo Mancabelli, Sara Tagliaferri, Antonio Nouvenne, Christian Milani, Daniele Del Rio, Fulvio Lauretani, Marcello Maggio, Marco Ventura, Tiziana Meschi
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0140725

Characterization of Bacterial Communities Associated with the Tyrian Purple Producing Gland in a Marine Gastropod
Cited by: 13
Author(s): Ajit Kumar Ngangbam, Abdul Baten, Daniel Le Waters, Steve W Whalan, Kirsten Benkendorff
Software Mentions: 1
Published: about 9 years ago

10.1002/ece3.679

Community patterns of the small riverine benthos within and between two contrasting glacier catchments
Cited by: 11
Author(s): Ursula Eisendle-Flöckner, Christian D. Jersabek, Martín Kirchmair, Kerstin Hashold, Walter Traunspurger
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0217165

The composition of bacterial communities associated with plastic biofilms differs between different polymers and stages of biofilm succession
Cited by: 176
Author(s): Maria Pinto, Teresa M. Langer, Thorsten Hüffer, Thilo Hofmann, Gerhard J. Herndl
Software Mentions: 1
Published: over 5 years ago

10.1002/ece3.2117

A trait-based approach reveals the feeding selectivity of a small endangered Mediterranean fish
Cited by: 11
Author(s): Pablo Rodríguez‐Lozano, Iraima Verkaik, Alberto Maceda‐Veiga, Mario Muñoz Monroy, Adolfo de Sostoa, María Rieradevall, Narcı́s Prat
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms22020689

Paternal Methyl Donor Supplementation in Rats Improves Fertility, Physiological Outcomes, Gut Microbial Signatures and Epigenetic Markers Altered by High Fat/High Sucrose Diet
Cited by: 7
Author(s): Faye Chleilat, Alana Schick, Julie Deleemans, Raylene A. Reimer
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22031233

Intestinal SIRT1 Deficiency-Related Intestinal Inflammation and Dysbiosis Aggravate TNFα-Mediated Renal Dysfunction in Cirrhotic Ascitic Mice
Cited by: 6
Author(s): Yu Te Chou, Tze Tze Liu, Ueng Cheng Yang, Chia Chang Huang, Chih Wei Liu, Shiang Fen Huang, Tzu-Hao Li, Hsuan Miao Liu, Ming Lin, Ying Yang, Tzung-Yan Lee, Yi Hsiang Huang, Ming Hou, Han Chieh Lin
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.01459

The Capacity of the Fecal Microbiota From Malawian Infants to Ferment Resistant Starch
Cited by: 9
Author(s): Yanan Wang, Elissa Mortimer, Kondwani Katundu, Noel Kalanga, Lex E. X. Leong, Geetha Gopalsamy, Claus T. Christophersen, Alyson Richard, Aravind Shivasami, Guy C. J. Abell, Graeme P. Young, Geraint B. Rogers
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0026695

The Response of Thalassiosira pseudonana to Long-Term Exposure to Increased CO2 and Decreased pH
Cited by: 102
Author(s): Katharine J. Crawfurd, John A. Raven, Glen Wheeler, Emily J. Baxter, Ian Joint
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0234139

Changes in conservation value from grasslands to savannas to forests: How a temperate canopy cover gradient affects butterfly community composition
Cited by: 5
Author(s): Ralph Grundel, Gary S. Dulin, Noel B. Pavlovic
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0188806

Principal component and discriminant analyses as powerful tools to support taxonomic identification and their use for functional and phylogenetic signal detection of isolated fossil shark teeth
Cited by: 36
Author(s): Giuseppe Marramà, Jürgen Kriwet
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0092193

Exercise Prevents Weight Gain and Alters the Gut Microbiota in a Mouse Model of High Fat Diet-Induced Obesity
Cited by: 425
Author(s): Christian C. Evans, Kathy J. LePard, Jeff Kwak, Mary C. Stancukas, Samantha Laskowski, Joseph D. Dougherty, Laura J. Moulton, A. Glawe, Yunwei Wang, Vanessa Leone, Dionysios A. Antonopoulos, Dan Smith, Eugene B. Chang, Mae J. Ciancio
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2018.03334

Bacterial Communities in the Alpaca Gastrointestinal Tract Vary With Diet and Body Site
Cited by: 3
Author(s): Courtney Carroll, Kyle D. Olsen, Nathan J. Ricks, Kimberly A. Dill‐McFarland, Garret Suen, Todd Robinson, John M. Chaston
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.00956

Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control?
Cited by: 23
Author(s): Sara Rassner, Alexandre M. Anesio, Susan Elizabeth Girdwood, Katherina Hell, Jarishma K. Gokul, David E. Whitworth, Arwyn Edwards
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0212842

Benthic community succession on artificial and natural coral reefs in the northern Gulf of Aqaba, Red Sea
Cited by: 22
Author(s): Emily Higgins, Robert Eric Scheibling, Kelsey M. Desilets, Anna Meta×as
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01749

Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients
Cited by: 8
Author(s): Marie Beaume, Vladimir Lazarević, Thilo Köhler, Nadia Gaïa, Oriol Manuel, John-David Aubert, Loic Bærlocher, Laurent Farinelli, Paola Gasche, Jacques Schrenzel, Christian van Delden, Rita Achermann, Patrizia Amico, Philippe Baumann, Guido Beldi, Christian Benden, Christoph Berger, Isabelle Binet, Pierre‐Yves Bochud, Elsa Boely, Heiner C. Bucher, Léo H. Bühler, Thierry Carell, Emmanuelle Catana, Yves Chalandon, Sabina De Geest, Olivier de Rougemont, Michael Dickenmann, Michel Duchosal, Thomas Fehr, Sylvie Ferrari‐Lacraz, Christian Garzoni, Paola Gasche Soccal, Emiliano Giostra, Déla Golshayan, Daniel W. Good, Karine Hadaya, Jörg Halter, Dominik Heim, Christoph Hess, Sven Hillinger, Hans H. Hirsch, Cédric Hirzel, Günther F.L. Hofbauer, Uyen Huynh‐Do, Franz F. Immer, Richard Klaghofer, Michael Koller, Bettina Laesser, Roger Lehmann, Christian Lovis, Hanspeter Marti, Pierre Yves Martin, Luca Martinolli, Pascal Meylan, Paul Mohaçsi, Isabelle Morard, Philippe Morel, Ulrike Mueller, Nicolas J. Mueller, Helen Mueller-McKenna, A Müller, Thomas Müller, Beat Müllhaupt, David Nadal, Manuel Pascual, Jakob Passweg, Chantal Piot Ziegler, Juliane Rick, Eddy Roosnek, Anne Rosselet, Silvia Rothlin, Frank Ruschitzka, Urs Schanz, Stefan Schaub, Christian Seiler, Susanne Stampf, Jürg Steiger, Guido Stirnimann, Guido Toso, Dimitri Tsinalis, Jean-Pierre Venetz, Jean Villard, Madeleine Wick, Markus J. Wilhelm, Patrick Yerly
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms22041647

A Newly Developed Synbiotic Yogurt Prevents Diabetes by Improving the Microbiome–Intestine–Pancreas Axis
Cited by: 13
Author(s): Brandi Miller, Rabina Mainali, Ravinder Nagpal, Hariom Yadav
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22052331

Five Days Periodic Fasting Elevates Levels of Longevity Related Christensenella and Sirtuin Expression in Humans
Cited by: 22
Author(s): Stephanie Lilja, Carina Stoll, Ulrike Krammer, Berit Hippe, Kalina Duszka, Tewodros Debebe, Ingrid Höfinger, Jürgen König, Angelika Pointner, Alexander G. Haslberger
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.705020

Gut Microbiota Diversity and C-Reactive Protein Are Predictors of Disease Severity in COVID-19 Patients
Cited by: 48
Author(s): André Moreira-Rosário, Cláudia Marques, Hélder Pinheiro, João R. Araújo, Pedro Ribeiro, Rita Rocha, Inês Barreiros Mota, Diogo Pestana, Rogers Ribeiro, Ana Margarida Pereira, Maria José Sousa, José B. Pereira-Leal, José de Sousa, Juliana Morais, Diana Teixeira, Júlio César Rocha, Marta P. Silvestre, Nuno Príncipe, Nuno Gatta, J. A. Amado, Lurdes Santos, Fernando Maltêz, Ana Boquinhas, Germano de Sousa, Nuno Germano, Gonçalo Sarmento, Cristina Granja, Pedro Póvoa, Ana Faria, Conceição Calhau
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2017.01702

Composted Cattle Manure Increases Microbial Activity and Soil Fertility More Than Composted Swine Manure in a Submerged Rice Paddy
Cited by: 126
Author(s): Suvendu Das, Seung Tak Jeong, Suvendu Das
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2014.00616

Microbial interactions and the ecology and evolution of Hawaiian Drosophilidae
Cited by: 3
Author(s): Timothy K. O’Connor, Parris T. Humphrey, Richard T. Lapoint, Noah K. Whiteman, Patrick M. O’Grady
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2019.01381

Microbiota Analysis for the Optimization of Campylobacter Isolation From Chicken Carcasses Using Selective Media
Cited by: 12
Author(s): Jinshil Kim, Hakdong Shin, Hyeeun Park, Hayan Jung, Junhyung Kim, Seongbeom Cho, Sangryeol Ryu, Byeonghwa Jeon
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22052453

Examining the Gastrointestinal and Immunomodulatory Effects of the Novel Probiotic Bacillus subtilis DE111
Cited by: 19
Author(s): Kimberley E. Freedman, Jessica L. Hill, Yu Wei, Allegra R. Vazquez, Diana S. Grubb, Roxanne E. Trotter, Scott D. Wrigley, Sarah Johnson, Michelle T. Foster, Tiffany L. Weir
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0043063

Copepods in Turbid Shallow Soda Lakes Accumulate Unexpected High Levels of Carotenoids
Cited by: 17
Author(s): Tobias Schneider, Alois Herzig, Karin A. Koinig, Rubén Sommaruga
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2020.591358

Soil Bacterial and Archaeal Communities and Their Potential to Perform N-Cycling Processes in Soils of Boreal Forests Growing on Well-Drained Peat
Cited by: 13
Author(s): Marika Truu, Hiie Nõlvak, Ivika Ostonen, Kristjan Oopkaup, Martin Maddison, Teele Ligi, Mikk Espenberg, Veiko Uri, Ülo Mander, Jaak Truu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.02851

Effect of Different Substrates on Soil Microbial Community Structure and the Mechanisms of Reductive Soil Disinfestation
Cited by: 22
Author(s): Xian-Zheng Tan, Hongkai Liao, Liangzuo Shu, Huaiying Yao
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0174855

A coral-algal phase shift in Mesoamerica not driven by changes in herbivorous fish abundance
Cited by: 67
Author(s): Jesús Ernesto Arias‐González, Tak Fung, Robert M. Seymour, Joaquín Rodrigo Garza-Pérez, Gilberto Acosta‐González, Yves‐Marie Bozec, Craig R. Johnson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0022950

Transcriptome Fingerprinting Analysis: An Approach to Explore Gene Expression Patterns in Marine Microbial Communities
Cited by: 5
Author(s): Montserrat Coll-Lladó, Silvia G. Acinas, Cristina Pujades, Carlos Pedrós-Alió
Software Mentions: 1
Published: over 13 years ago

10.3390/nu12061705

The High-Fat Diet Based on Extra-Virgin Olive Oil Causes Dysbiosis Linked to Colorectal Cancer Prevention
Cited by: 19
Author(s): Carmen Rodríguez-García, Cristina Sánchez-Quesada, Ignacio Algarra, José J. Gaforio
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.730477

Assessing the Influence of Environmental Sources on the Gut Mycobiome of Tibetan Macaques
Cited by: 3
Author(s): Binghua Sun, Yingna Xia, Samuel Davison, Andrés Gómez, Paul A. Garber, Katherine R. Amato, Xiaojuan Xu, Dong Xia, Xi Wang, Jin Hua Li
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0207395

Functional diversity and nutritional content in a deep-sea faunal assemblage through total lipid, lipid class, and fatty acid analyses
Cited by: 29
Author(s): Camilla Parzanini, Christopher C. Parrish, Jean‐François Hamel, Annie Mercier
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.01848

Isolation, Diversity, and Growth-Promoting Activities of Endophytic Bacteria From Tea Cultivars of Zijuan and Yunkang-10
Cited by: 56
Author(s): Xiaomei Yan, Zhi Wang, Mei Yu, Liqun Wang, Xu Wang, Qingshan Xu, Su Peng, Yu Zhou, Chaoling Wei
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01886

Legitimate and Reliable Determination of the Age-Related Intestinal Microbiome in Young Piglets; Rectal Swabs and Fecal Samples Provide Comparable Insights
Cited by: 15
Author(s): R. Choudhury, Anouschka Middelkoop, J.E. Bolhuis, Michiel Kleerebezem
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0241183

Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2
Cited by: 6
Author(s): Lisa T. Crummett
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22094734

Gut Susceptibility to Viral Invasion: Contributing Roles of Diet, Microbiota and Enteric Nervous System to Mucosal Barrier Preservation
Cited by: 7
Author(s): Marcela Julio‐Pieper, Alejandra López-Aguilera, Johana Eyzaguirre-Velásquez, Loreto Olavarría-Ramírez, Claudia Ibacache-Quiroga, Javier A. Bravo, Gonzalo Cruz
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01083

The Variation of Nasal Microbiota Caused by Low Levels of Gaseous Ammonia Exposure in Growing Pigs
Cited by: 17
Author(s): Tongxin Wang, Qiongyu He, Weilei Yao, Yafei Shao, Li Ji, Feiruo Huang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0227362

Morphological consequences of artificial cranial deformation: Modularity and integration
Cited by: 8
Author(s): Thomas A. Püschel, Martin Frieß, Germán Manríquez
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.00693

Recto-Anal Junction (RAJ) and Fecal Microbiomes of Cattle Experimentally Challenged With Escherichia coli O157:H7
Cited by: 6
Author(s): Raies A. Mir, Robert G. Schaut, Torey Looft, Heather K. Allen, Vijay Kumar Sharma, Indira T. Kudva
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0189930

Marine biodiversity at the end of the world: Cape Horn and Diego Ramírez islands
Cited by: 30
Author(s): Alan M. Friedlander, Enric Ballesteros, Tom W. Bell, Jonatha Giddens, Brad Henning, Mathias Hüne, Alex Muñoz, Pelayo Salinas‐de‐León, Enric Sala
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.00312

Dietary Inulin and Trichuris suis Infection Promote Beneficial Bacteria Throughout the Porcine Gut
Cited by: 17
Author(s): Sophie Stolzenbach, Laura J. Myhill, Lee O’Brien Andersen, Łukasz Krych, Helena Mejer, Andrew R. Williams, Peter Nejsum, Christen Rune Stensvold, Dennis Sandris Nielsen, Stig Milan Thamsborg
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.629802

Metaproteomics Reveals Similar Vertical Distribution of Microbial Transport Proteins in Particulate Organic Matter Throughout the Water Column in the Northwest Pacific Ocean
Cited by: 1
Author(s): Ling-Fen Kong, Kunlun Yan, Zhang-Xian Xie, Yuexin He, Lin Lin, Hongkai Xu, Siqi Liu, Dazhi Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02146

A Comparative Analysis of Microbial DNA Preparation Methods for Use With Massive and Branching Coral Growth Forms
Cited by: 14
Author(s): Alejandra Hernández‐Agreda, William Leggat, Tracy D. Ainsworth
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0017115

Spatial Patterns in Herbivory on a Coral Reef Are Influenced by Structural Complexity but Not by Algal Traits
Cited by: 83
Author(s): Adriana Vergés, Mathew A. Vanderklift, Christopher Doropoulos, Glenn A. Hyndes
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2018.02343

Leaves of Indoor Ornamentals Are Biodiversity and Functional Hotspots for Fungi
Cited by: 9
Author(s): Alexander Mahnert, Rocel Amor Ortega, Christian Berg, Martín Grube, Gabriele Berg
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.00268

Microbiome in Cladonia squamosa Is Vertically Stratified According to Microclimatic Conditions
Cited by: 20
Author(s): Hyun-Ju Noh, Yung Mi Lee, Chae Haeng Park, Hong Kum Lee, Jang-Cheon Cho, Soon Gyu Hong
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.664257

Prenatal Depression, Breastfeeding, and Infant Gut Microbiota
Cited by: 10
Author(s): Nicole Rodriguez, Hein Min Tun, Catherine J. Field, Piushkumar J. Mandhane, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22095005

A Tryptophan-Deficient Diet Induces Gut Microbiota Dysbiosis and Increases Systemic Inflammation in Aged Mice
Cited by: 30
Author(s): Ibrahim Yusufu, Kai Ding, Kathryn E. Smith, Umesh D. Wankhade, Bikash Sahay, Gregory Taylor Patterson, Rafał Pacholczyk, Satish Adusumilli, Mark W. Hamrick, William Hill, Carlos M. Isales, Sadanand Fulzele
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2015.01022

Temporal stability of bacterial symbionts in a temperate ascidian
Cited by: 20
Author(s): Susanna López‐Legentil, Xavier Turon, Roger Espluga, Patrick M. Erwin
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01531

High Spatial and Temporal Variations of Microbial Community along the Southern Catfish Gastrointestinal Tract: Insights into Dynamic Food Digestion
Cited by: 24
Author(s): Zhimin Zhang, Dapeng Li, Mohamed M. Refaey, Weigang Xu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0133974

Inferring Phytoplankton, Terrestrial Plant and Bacteria Bulk δ¹³C Values from Compound Specific Analyses of Lipids and Fatty Acids
Cited by: 36
Author(s): Sami J. Taipale, Elina Peltomaa, Minna Hiltunen, Roger Jones, Martin W. Hahn, Christina Biasi, Michael T. Brett
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0225845

The effect of carbohydrate sources: Sucrose, invert sugar and components of mānuka honey, on core bacteria in the digestive tract of adult honey bees (Apis mellifera)
Cited by: 22
Author(s): MA Taylor, Alastair W. Robertson, Patrick J. Biggs, Kate Richards, Daniel Fiske Jones, Shanthi G. Parkar
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0052108

Assessing Dispersal Patterns of Fish Propagules from an Effective Mediterranean Marine Protected Area
Cited by: 44
Author(s): Antonio Franco, Giovanni Coppini, J. M. Pujolar, Giulio A. De Leo, Marino Gatto, Vladyslav Lyubartsev, Paco Melià, Lorenzo Zane, Paolo Guidetti
Software Mentions: 1
Published: almost 12 years ago

10.1186/s40168-019-0739-x

Testing the relationship between microbiome composition and flux of carbon and nutrients in Caribbean coral reef sponges
Cited by: 30
Author(s): Shelby E. Gantt, Steven E. McMurray, Amber D. Stubler, Christopher M. Finelli, Joseph R. Pawlik, Patrick M. Erwin
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0108801

Reproductive Strategies of the Insidious Fish Ectoparasite, Neobenedenia sp. (Capsalidae: Monogenea)
Cited by: 27
Author(s): Truong Dinh Hoai, Kate S. Hutson
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2016.00321

Short-Term Dynamics of North Sea Bacterioplankton-Dissolved Organic Matter Coherence on Molecular Level
Cited by: 43
Author(s): Judith Lucas, Irina Koester, Antje Wichels, Jutta Niggemann, Thorsten Dittmar, Ulrich Callies, Karen Helen Wiltshire, Gunnar Gerdts
Software Mentions: 1
Published: over 8 years ago

10.3390/nu12030631

Effect of Caloric Restriction on BMI, Gut Microbiota, and Blood Amino Acid Levels in Non-Obese Adults
Cited by: 34
Author(s): Huajie Zou, Dan Wang, Huahui Ren, Kaiye Cai, Peishan Chen, Chao Fang, Zhun Shi, Pengfan Zhang, Jian Wang, Huanming Yang, Zhong Huang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0068533

Host-Specific Interactions with Environmental Factors Shape the Distribution of Symbiodinium across the Great Barrier Reef
Cited by: 56
Author(s): Linda Tonk, Eugenia M. Sampayo, Scarla J. Weeks, Marites Canto, Ove Hoegh‐Guldberg
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2019.00458

The Effects of Unfermented and Fermented Cow and Sheep Milk on the Gut Microbiota
Cited by: 14
Author(s): Elizabeth A. Rettedal, Eric Altermann, Nicole C. Roy, Julie E. Dalziel
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0130053

Partitioning the Relative Importance of Phylogeny and Environmental Conditions on Phytoplankton Fatty Acids
Cited by: 196
Author(s): Aaron W. E. Galloway, Monika Winder
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02689

Vasoactive Intestinal Peptide Deficiency Is Associated With Altered Gut Microbiota Communities in Male and Female C57BL/6 Mice
Cited by: 15
Author(s): Manpreet Bains, Caleb Laney, Annie E. Wolfe, Megan Orr, James A. Waschek, Aaron C. Ericsson, Glenn Dorsam
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0238173

Changes in reflectance of rice seedlings during planthopper feeding as detected by digital camera: Potential applications for high-throughput phenotyping
Cited by: 6
Author(s): Finbarr G. Horgan, Artzai Jauregui, Ainara Peñalver‐Cruz, Eduardo Crisol‐Martínez, Carmencita C. Bernal
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0254172

In-vivo impact of common cosmetic preservative systems in full formulation on the skin microbiome
Cited by: 7
Author(s): Barry Murphy, Michael Hoptroff, David H. Arnold, Richard Eccles, Stuart Campbell-Lee
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0109280

In Situ Mortality Experiments with Juvenile Sea Bass (Dicentrarchus labrax) in Relation to Impulsive Sound Levels Caused by Pile Driving of Windmill Foundations
Cited by: 15
Author(s): E. Debusschere, Bert De Coensel, Anna Bajek, Dick Botteldooren, Kristian Hostens, Jan Vanaverbeke, Sofie Vandendriessche, K. Van Ginderdeuren, Magda Vincx, S. Degraer
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0074077

Are Hotspots Always Hotspots? The Relationship between Diversity, Resource and Ecosystem Functions in the Arctic
Cited by: 39
Author(s): Heike Link, Dieter Piepenburg, Philippe Archambault
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0220130

Acidification-induced cellular changes in Symbiodinium isolated from Mussismilia braziliensis
Cited by: 4
Author(s): Lilian Jorge Hill, Wladimir Costa Paradas, Maria Julia Willemes, Miria G. Pereira, Paulo S. Salomon, Rodrigo Mariath, Rodrigo L. Moura, Geórgia C. Atella, Marcos Farina, Gilberto M. Amado‐Filho, Leonardo T. Salgado
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0029359

Metabolomic Assessment of Induced and Activated Chemical Defence in the Invasive Red Alga Gracilaria vermiculophylla
Cited by: 92
Author(s): Göran M. Nylund, Florian Weinberger, Martin Rempt, Georg Pohnert
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms221910616

Monocarboxylate Transporter-2 Expression Restricts Tumor Growth in a Murine Model of Lung Cancer: A Multi-Omic Analysis
Cited by: 2
Author(s): Abdelnaby Khalyfa, Zhuanhong Qiao, Murugesan Raju, Chi‐Ren Shyu, Lyndon M. Coghill, Aaron C. Ericsson, David Gozal
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2021.712212

Administration of All-Trans Retinoic Acid to Pregnant Sows Alters Gut Bacterial Community of Neonatal Piglets With Different Hoxa1 Genotypes
Cited by: 1
Author(s): Haimei Zhou, Huadong Wu, Yixin Chen, Wanjie Zou, Wei Lü, Yan He
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.01192

Community Structure of Bacteria Associated With Drifting Sargassum horneri, the Causative Species of Golden Tide in the Yellow Sea
Cited by: 19
Author(s): Xiangyuan Mei, Chunhui Wu, Jianmin Zhao, Yun Tian, Peng Jiang
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12103020

Alterations in the Intestinal Morphology, Gut Microbiota, and Trace Mineral Status Following Intra-Amniotic Administration (Gallus gallus) of Teff (Eragrostis tef) Seed Extracts
Cited by: 19
Author(s): Johnathon Carboni, Spenser Reed, Nikolai Kolba, Adi Eshel, Omry Koren, Elad Tako
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2018.00833

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution
Cited by: 46
Author(s): D. L. Leite, Joana Falcão Salles, Emiliano Nicolas Calderón, Clovis B. Castro, Adalto Bianchini, Joseane Aparecida Marques, Jan Dirk van Elsas, Raquel S. Peixoto
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.01697

Schizasterid Heart Urchins Host Microorganisms in a Digestive Symbiosis of Mesozoic Origin
Cited by: 4
Author(s): Alexander Ziegler, Ariel M Gilligan, Jesse G. Dillon, Bruno Pernet
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0016357

Characteristics of the Mesophotic Megabenthic Assemblages of the Vercelli Seamount (North Tyrrhenian Sea)
Cited by: 123
Author(s): Marzia Bo, Marco Bertolino, Mireno Borghini, Michela Castellano, Anabella Covazzi Harriague, Cristina Gioia Di Camillo, G.P. Gasparini, Cristina Misic, Paolo Pedrini, Antonio Pusceddu, Katrin Schröeder, Giorgio Bavestrello
Software Mentions: 1
Published: almost 14 years ago

10.1186/s40168-017-0312-4

Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism
Cited by: 116
Author(s): José A. Caparrós-Martín, Ricky R. Lareu, Joshua P. Ramsay, Jörg Peplies, F. Jerry Reen, Henrietta A. Headlam, Natalie C. Ward, Kevin D. Croft, Philip Newsholme, Jeffery Hughes, Fergal O’Gara
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0084739

Flood Impacts in Keppel Bay, Southern Great Barrier Reef in the Aftermath of Cyclonic Rainfall
Cited by: 50
Author(s): Alison Jones, Ray Berkelmans
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2020.592539

Comparative Analysis of the Gut Microbial Communities of the Eurasian Kestrel (Falco tinnunculus) at Different Developmental Stages
Cited by: 12
Author(s): Lei Zhou, Xiaona Huo, Boyu Liu, Hui Wu, Feng Jiang
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0063693

Temporal Variations in Metabolic and Autotrophic Indices for Acropora digitifera and Acropora spicifera – Implications for Monitoring Projects
Cited by: 3
Author(s): Saskia Hinrichs, Nicole L. Patten, Anya M. Waite
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2020.599438

Propionate Production by Bioelectrochemically-Assisted Lactate Fermentation and Simultaneous CO2 Recycling
Cited by: 8
Author(s): Marco Isipato, Paolo Dessì, Carlos Sánchez, Simon Mills, Umer Zeeshan Ijaz, Fabiano Asunis, Daniela Spiga, Giorgia De Gioannis, Michele Mascia, Gavin Collins, Aldo Muntoni, Piet N.L. Lens
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0146053

Quantifying the Adaptive Cycle
Cited by: 23
Author(s): David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance Gunderson, Olle Hjerne, Monika Winder
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0075873

Spatial and Temporal Patterns of Eastern Australia Subtropical Coral Communities
Cited by: 23
Author(s): Steven Dalton, George Roff
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2019.02243

Influence of Dietary Supplementation of Probiotic Pediococcus acidilactici MA18/5M During the Transition From Freshwater to Seawater on Intestinal Health and Microbiota of Atlantic Salmon (Salmo salar L.)
Cited by: 41
Author(s): Alexander Jaramillo-Torres, Mark D. Rawling, Ana Rodiles, Heidi Eileen Mikalsen, Lill-Heidi Johansen, John Tinsley, Torunn Forberg, Elisabeth Aasum, Mathieu Castex, Daniel L. Merrifield
Software Mentions: 1
Published: about 5 years ago

10.1093/jn/nxaa219

Avocado Consumption Alters Gastrointestinal Bacteria Abundance and Microbial Metabolite Concentrations among Adults with Overweight or Obesity: A Randomized Controlled Trial
Cited by: 23
Author(s): Sharon V. Thompson, Melisa A Bailey, Andrew M. Taylor, Jennifer Kaczmarek, Annemarie R Mysonhimer, Caitlyn G. Edwards, Ginger E. Reeser, Nicholas A. Burd, Naiman A. Khan, Hannah D. Holscher
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2015.00418

Examining the impact of acetylene on N-fixation and the active sediment microbial community
Cited by: 49
Author(s): Robinson W. Fulweiler, Elise M. Heiss, Mary Kate Rogener, Silvia E. Newell, Gary R. LeCleir, Sarah M. Kortebein, Steven W. Wilhelm
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0130116

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation
Cited by: 48
Author(s): Maryam Yazdani Foshtomi, Ulrike Braeckman, Sofie Derycke, Melanie Sapp, D. Van Gansbeke, Koen Sabbe, Anne Willems, Magda Vincx, Jan Vanaverbeke
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0166679

The Farther the Better: Effects of Multiple Environmental Variables on Reef Fish Assemblages along a Distance Gradient from River Influences
Cited by: 19
Author(s): Leonardo Mitrano Neves, Tatiana P. Teixeira-Neves, Guilherme H. Pereira-Filho, Francisco Gerson Araújo
Software Mentions: 1
Published: almost 8 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292