cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-02516-3

Comparison of DNA-, PMA-, and RNA-based 16S rRNA Illumina sequencing for detection of live bacteria in water
Cited by: 94
Author(s): Ru Li, Hein Min Tun, Musarrat Jahan, Zhengxiao Zhang, Ayush Kumar, W. G. Dilantha Fernando, Annemieke Farenhorst, Ehsan Khafipour
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06013-5

Assessment of different techniques for 3D superimposition of serial digital maxillary dental casts on palatal structures
Cited by: 63
Author(s): Georgios Vasilakos, Roman Schilling, Demetrios J. Halazonetis, Nikolaos Gkantidis
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06394-7

Threats to large brown algal forests in temperate seas: the overlooked role of native herbivorous fish
Cited by: 46
Author(s): Fabrizio Gianni, Fabrizio Bartolini, Alexis Pey, Mathieu Laurent, Gustavo M. Martins, Laura Airoldi, Luisa Mangialajo
Software Mentions: 1
Published: about 9 years ago

10.3390/nu11061345

Resistant Starch Is Actively Fermented by Infant Faecal Microbiota and Increases Microbial Diversity
Cited by: 21
Author(s): Geetha Gopalsamy, Elissa Mortimer, Paul Greenfield, Anthony R. Bird, Graeme P. Young, Claus T. Christophersen
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms8020170

Revealing the Variation and Stability of Bacterial Communities in Tomato Rhizosphere Microbiota
Cited by: 33
Author(s): Zhiqiang Cheng, Shaonan Lei, Ye Li, Wei Huang, Rongqin Ma, Juan Xiong, Ting Zhang, Lingyue Jin, Hafeez Ul Haq, Xiaohong Xu, Baoyu Tian
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8091278

Effect of Sample Collection (Manual Expression vs. Pumping) and Skimming on the Microbial Profile of Human Milk Using Culture Techniques and Metataxonomic Analysis
Cited by: 11
Author(s): Maricela Rodríguez‐Cruz, Claudio Alba, Marina Aparicio, María Ángeles Checa, Leónides Fernández, Juan Miguel Díaz Rodríguez
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms9081755

The Effect of Common Viral Inactivation Techniques on 16S rRNA Amplicon-Based Analysis of the Gut Microbiota
Cited by: 0
Author(s): Zachary L. McAdams, Kevin L. Gustafson, Aaron C. Ericsson
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-017-0345-8

Preparing for the crewed Mars journey: microbiota dynamics in the confined Mars500 habitat during simulated Mars flight and landing
Cited by: 42
Author(s): Petra Schwendner, Alexander Mahnert, Kaisa Koskinen, Christine Moissl-Eichinger, Simon Barczyk, Reinhard Wirth, Gabriele Berg, Petra Rettberg
Software Mentions: 1
Published: almost 9 years ago

10.1093/aobpla/plw004

Changes in composition, ecology and structure of high-mountain vegetation: a re-visitation study over 42 years
Cited by: 63
Author(s): Alberto Evangelista, Ludovico Frate, María Laura Carranza, Fabio Attorre, Giovanni Pelino, Angela Stanisci
Software Mentions: 1
Published: about 11 years ago

10.1155/2021/5579369

Dietary Supplementation with Inulin Modulates the Gut Microbiota and Improves Insulin Sensitivity in Prediabetes
Cited by: 6
Author(s): Xiaojing Wang, Tong Wang, Qian Zhang, Li Xu, Xinhua Xiao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-30474-x

Seasonal variability of diet and trophic level of the gelatinous predator Pelagia noctiluca (Scyphozoa)
Cited by: 26
Author(s): Giacomo Milisenda, Sergio Rossi, Salvatrice Vizzini, Verónica Fuentes, Jennifer E. Purcell, Uxue Tilves, Stefano Piraino
Software Mentions: 1
Published: about 8 years ago

10.1186/s13568-021-01233-5

Effect of liquid volume and microflora source on degradation rate and microbial community in corn stover degradation
Cited by: 2
Author(s): Jingjing Wang, Dan Zhu, Siqi Zhao, Sheng Xu, Rong Yang, Wei Zhao, Xiaoxia Zhang, Zhiyong Huang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.ijppaw.2019.05.008

Comparative microbiomes of ticks collected from a black rhino and its surrounding environment
Cited by: 5
Author(s): Seogwon Lee, Ju Yeong Kim, Myung‐hee Yi, In Yong Lee, Robert D. Fyumagwa, Tai Soon Yong
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-30159-5

ERAP1 deficient mice have reduced Type 1 regulatory T cells and develop skeletal and intestinal features of Ankylosing Spondylitis
Cited by: 22
Author(s): Yuliya Pepelyayeva, David P W Rastall, Yasser A. Aldhamen, Patrick M. O’Connell, Sandra Raehtz, Fadel S. Alyaqoub, Maja K. Blake, Ashley M Raedy, Ariana Angarita, Abdulraouf M Abbas, Cristiane Pereira-Hicks, Sarah G Roosa, Laura R. McCabe, Andrea Amalfitano
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-30581-9

Sex-specific associations of infants’ gut microbiome with arsenic exposure in a US population
Cited by: 45
Author(s): Anne G. Hoen, Juliette C. Madan, Zhigang Li, Modupe Coker, Sara Lundgren, Hilary G. Morrison, Thomas J. Palys, Brian P. Jackson, Mitchell L. Sogin, Kathryn L. Cottingham, Margaret R. Karagas
Software Mentions: 1
Published: about 8 years ago

10.1016/j.ijppaw.2020.06.002

Impacts of ontogenetic dietary shifts on the food-transmitted intestinal parasite communities of two lake salmonids
Cited by: 4
Author(s): Sebastian Prati, Eirik Haugstvedt Henriksen, Rune Knudsen, Per‐Arne Amundsen
Software Mentions: 1
Published: about 6 years ago

10.1093/aobpla/plv018

Changes in plant species composition of coastal dune habitats over a 20-year period
Cited by: 37
Author(s): Silvia Del Vecchio, Irene Prisco, Alicia Teresa Rosario Acosta, Angela Stanisci
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-018-31116-y

Distinct systemic microbiome and microbial translocation are associated with plasma level of anti-CD4 autoantibody in HIV infection
Cited by: 19
Author(s): Wanli Xu, Zhenwu Luo, Alexander V. Alekseyenko, Lisa Martin, Zhuang Wan, Binhua Ling, Zhiqiang Qin, Sonya L. Heath, Kendra Maas, Xiaomei Cong, Wei Jiang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-31683-0

Impact of mangrove forests degradation on biodiversity and ecosystem functioning
Cited by: 169
Author(s): Laura Carugati, Beatrice Gatto, Eugenio Rastelli, Marco Lo Martire, Caterina Coral, Silvestro Greco, Roberto Danovaro
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph15061185

Assessment of Mercury Concentration in Turtles (Podocnemis unifilis) in the Xingu River Basin, Brazil
Cited by: 5
Author(s): Marina Teófilo Pignati, Juarez Carlos Brito Pezzuti, Larissa Costa de Souza, Marcelo de Oliveira Lima, Wanderlei Antônio Pignati, Rosivaldo de Alcântara Mendes
Software Mentions: 1
Published: about 8 years ago

10.3390/nu13093247

Modifications in the Intestinal Functionality, Morphology and Microbiome Following Intra-Amniotic Administration (Gallus gallus) of Grape (Vitis vinifera) Stilbenes (Resveratrol and Pterostilbene)
Cited by: 13
Author(s): Mariana Juste Contin Gomes, Nikolai Kolba, Nikita Agarwal, Dean Kim, Adi Eshel, Omry Koren, Elad Tako
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40168-020-00915-9

Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula
Cited by: 78
Author(s): Shawn P. Brown, Michael A. Grillo, Justin C. Podowski, Katy D. Heath
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-32089-8

Tracking Fish Abundance by Underwater Image Recognition
Cited by: 96
Author(s): Simone Marini, Emanuela Fanelli, Valerio Sbragaglia, Ernesto Azzurro, Joaquín Del Río, Jacopo Aguzzi
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32375-5

Direct-fed microbial supplementation influences the bacteria community composition of the gastrointestinal tract of pre- and post-weaned calves
Cited by: 43
Author(s): Bridget E. Fomenky, Duy Ngoc, Guylaine Talbot, J. Chiquette, Nathalie Bissonnette, Yvan Chouinard, Martin Lessard, Eveline M. Ibeagha‐Awemu
Software Mentions: 1
Published: almost 8 years ago

10.1093/aobpla/plaa029

The impact of <i>Spodoptera exigua</i> herbivory on <i>Meloidogyne incognita</i>-induced root responses depends on the nematodes’ life cycle stages
Cited by: 12
Author(s): Crispus M Mbaluto, Esraa M Ahmad, Melody Fu, Ainhoa Martínez‐Medina, Nicole M. van Dam
Software Mentions: 1
Published: about 6 years ago

10.1186/s40168-021-01109-7

Bacterial colonization dynamics and antibiotic resistance gene dissemination in the hospital environment after first patient occupancy: a longitudinal metagenetic study
Cited by: 8
Author(s): Tilman E. Klassert, Rasmus Leistner, Cristina Zubiría-Barrera, Magdalena Stock, Marta López, Robert Neubert, Dominik Driesch, Petra Gastmeier, Hortense Slevogt
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-016-0226-6

The effect of cigarette smoking on the oral and nasal microbiota
Cited by: 106
Author(s): Guoqin Yu, Stephen Phillips, Mitchell H. Gail, James J. Goedert, Michael S. Humphrys, Jacques Ravel, Yan-Fang Ren, Neil E. Caporaso
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-015-0120-7

Variable responses of human and non-human primate gut microbiomes to a Western diet
Cited by: 112
Author(s): Katherine R. Amato, Carl J. Yeoman, Gabriela Cerda, Christopher A. Schmitt, Jennifer Danzy Cramer, Margret E. Berg Miller, Andrés Gómez, Trudy R. Turner, Brenda A. Wilson, Rebecca M. Stumpf, Karen E. Nelson, Bryan A. White, Rob Knight, Steven R. Leigh
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40168-018-0471-y

Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates
Cited by: 29
Author(s): Zhimin Zhang, Dapeng Li
Software Mentions: 1
Published: about 8 years ago

10.1186/s40168-019-0659-9

$W_{d}^{*}$-test: robust distance-based multivariate analysis of variance
Cited by: 34
Author(s): Bashir Hamidi, Kristin Wallace, Chenthamarakshan Vasu, Alexander V. Alekseyenko
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-33122-6

Effect of a butyrate-fortified milk replacer on gastrointestinal microbiota and products of fermentation in artificially reared dairy calves at weaning
Cited by: 31
Author(s): Eóin O’Hara, A. K. Kelly, Matthew S. McCabe, David A. Kenny, Le Luo Guan, Sinéad M. Waters
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-016-0185-y

Altered gut microbiota in Rett syndrome
Cited by: 100
Author(s): Francesco Strati, Duccio Cavalieri, Davide Albanese, Claudio De Felice, Claudio Donati, Joussef Hayek, Olivier Jousson, Silvia Leoncini, Massimo Pindo, Daniela Renzi, Lisa Rizzetto, Irene Stefanini, Antonino Calabrò, Carlotta De Filippo
Software Mentions: 1
Published: about 10 years ago

10.1186/s40168-020-00815-y

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories
Cited by: 148
Author(s): Shan Sun, Roshonda B. Jones, Anthony A. Fodor
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-33619-0

Non-invasive continuous real-time in vivo analysis of microbial hydrogen production shows adaptation to fermentable carbohydrates in mice
Cited by: 27
Author(s): José M. S. Fernández-Calleja, Prokopis Konstanti, Hans J. M. Swarts, Lex Bouwman, Vicenta Garcia-Campayo, Nils Billecke, Annemarie Oosting, Hauke Smidt, Jaap Keijer, Evert M. van Schothorst
Software Mentions: 1
Published: almost 8 years ago

10.3390/nu12040937

Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD)
Cited by: 31
Author(s): Clara Yieh Lin Chong, David W. Orr, Lindsay D. Plank, Tommi Vatanen, Justin M. O’Sullivan, Rinki Murphy
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-015-0126-1

The first microbial environment of infants born by C-section: the operating room microbes
Cited by: 99
Author(s): Hakdong Shin, Zhiheng Pei, Keith A. Martinez, Juana I Rivera-Viñas, Keimari Méndez, Humberto Cavallín, Maria Gloria Domínguez-Bello
Software Mentions: 1
Published: over 10 years ago

10.1186/s40168-021-01008-x

Temporal landscape of human gut RNA and DNA virome in SARS-CoV-2 infection and severity
Cited by: 37
Author(s): Tao Zuo, Liu Q, Fen Zhang, Yun Kit Yeoh, Yating Wan, Hui Zhan, Grace Lui, Zigui Chen, Amy Y.L. Li, Chun Pan Cheung, Nan Chen, Wenqi Lv, Ray Kit Ng, Eugene Y. K. Tso, Kitty S. C. Fung, Vivien Chan, Lowell Ling, Gavin M. Joynt, David Hui, Francis K.L. Chan, Paul K.S. Chan, Siew C. Ng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-33995-7

Differences in the fecal microbiota of neonates born at home or in the hospital
Cited by: 33
Author(s): Joan Combellick, Hakdong Shin, Dongjae Shin, Yi Cai, Holly Hagan, Corey Lacher, David L. Lin, Kathryn McCauley, Susan V. Lynch, Maria Gloria Domínguez-Bello
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijerph16162948

Greening of Daycare Yards with Biodiverse Materials Affords Well-Being, Play and Environmental Relationships
Cited by: 25
Author(s): Riikka Puhakka, Outi Rantala, Marja I. Roslund, Juho Rajaniemi, Olli H. Laitinen, Aki Sinkkonen
Software Mentions: 1
Published: about 7 years ago

10.1186/s40168-020-00960-4

Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment
Cited by: 10
Author(s): Jeremiah J. Minich, Farhana Ali, Clarisse Marotz, Pedro Belda-Ferre, Leslie Chiang, Justin P. Shaffer, Carolina S. Carpenter, Daniel McDonald, Jack A. Gilbert, Sarah Allard, Eric E. Allen, Rob Knight, Daniel A. Sweeney, Austin D. Swafford
Software Mentions: 1
Published: over 5 years ago

10.1186/s13568-018-0599-y

Microbial community and diversity in the feces of Sichuan takin (Budorcas taxicolor tibetana) as revealed by Illumina Miseq sequencing and quantitative real-time PCR
Cited by: 4
Author(s): Hongxiang Zhu, Dong Zeng, Ning Wang, Lili Niu, Yi Zhou, Yan Zeng, Xueqin Ni
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-34398-4

Association between Neutrophil-to-Lymphocyte Ratio and Gut Microbiota in a Large Population: a Retrospective Cross-Sectional Study
Cited by: 17
Author(s): Hee Yoon, Han Na Kim, Su Hwan Lee, Soo Jung Kim, Yoosoo Chang, Seungho Ryu, Hocheol Shin, Hyung Lae Kim, Jin Hwa Lee
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-017-0346-7

City-scale distribution and dispersal routes of mycobiome in residences
Cited by: 21
Author(s): Xinzhao Tong, Marcus H. Y. Leung, David E. Wilkins, Patrick K. H. Lee
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40168-019-0747-x

A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals
Cited by: 96
Author(s): Petar Šćepanović, Flavia Hodel, Stanislas Mondot, Valentin Partula, Allyson L. Byrd, Christian Hammer, Cécile Alanio, Jacob Bergstedt, Étienne Patin, Mathilde Touvier, Olivier Lantz, Matthew L. Albert, Darragh Duffy, Lluı́s Quintana-Murci, Jacques Fellay
Software Mentions: 1
Published: almost 7 years ago

10.1093/aobpla/plt043

Banking on the past: seed banks as a reservoir for rare and native species in restored vernal pools
Cited by: 34
Author(s): Akasha M. Faist, Scott Ferrenberg, Sharon K. Collinge
Software Mentions: 1
Published: over 13 years ago

10.1186/s40168-019-0646-1

Systemic translocation of Staphylococcus drives autoantibody production in HIV disease
Cited by: 21
Author(s): Zhenwu Luo, Min Li, Yongxia Wu, Zhefeng Meng, Lisa Martin, Lumin Zhang, Elizabeth Ogunrinde, Zejun Zhou, Shenghui Qin, Zhuang Wan, Maria Anna Julia Westerink, Stephanie Warth, Hui Liu, Ping Jin, David F. Stroncek, Quan-Zhen Li, Ena Wang, Xueling Wu, Sonya L. Heath, Zihai Li, Alexander V. Alekseyenko, Wei Jiang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34761-5

The effect of drinking water pH on the human gut microbiota and glucose regulation: results of a randomized controlled cross-over intervention
Cited by: 23
Author(s): Torben Hansen, Mette Torp Thomassen, Mia Madsen, Timo Kern, Emilie Glad Bak, Alireza Kashani, Kristine H. Allin, Torben Hansen, Oluf Pedersen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-021-01083-0

SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
Cited by: 34
Author(s): Clarisse Marotz, Pedro Belda-Ferre, Farhana Ali, Dás P, Shi Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E. Diner, Gibraan Rahman, Daniel McDonald, George E. Armstrong, Sho M. Kodera, S. De Donato, Gertrude Ecklu-Mensah, Neil Gottel, Mariana C. Salas Garcia, Leslie Chiang, Rodolfo A. Salido, Justin P. Shaffer, Mac Kenzie Bryant, Karenina Sanders, Greg Humphrey, Gail Ackermann, Niina Haiminen, Kristen L. Beck, Ho-Cheol Kim, Anna Paola Carrieri, Laxmi Parida, Yoshiki Vázquez-Baeza, Francesca J. Torriani, Rob Knight, Jack A. Gilbert, Daniel A. Sweeney, Sarah Allard
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-34556-8

Functional traits of a native and an invasive clam of the genus Ruditapes occurring in sympatry in a coastal lagoon
Cited by: 5
Author(s): Marta Lobão Lopes, Joana Patrício Rodrigues, Daniel Crespo, Marina Dolbeth, Ricardo Calado, Ana I. Lillebø
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-015-0082-9

Forensic analysis of the microbiome of phones and shoes
Cited by: 134
Author(s): Simon Lax, Jarrad Hampton-Marcell, Sean M. Gibbons, Geórgia Barguil Colares, Daniel P. Smith, Jonathan A. Eisen, Jack A. Gilbert
Software Mentions: 1
Published: over 11 years ago

10.1186/s40168-020-00894-x

The human gut archaeome: identification of diverse haloarchaea in Korean subjects
Cited by: 55
Author(s): Joon Yong Kim, Tae Woong Whon, Mi Young Lim, Yeon Bee Kim, Namhee Kim, Min‐Sung Kwon, Juseok Kim, Se Hee Lee, Hak-Jong Choi, In-Hyun Nam, Won‐Hyong Chung, Jung-Ha Kim, Jin-Woo Bae, Seong Woon Roh
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35549-3

Nitrogen acquisition and resource allocation strategies in temperate seagrass Zostera nigricaulis: Uptake, assimilation and translocation processes
Cited by: 6
Author(s): Sasi Nayar, Maylene Loo, Jason E. Tanner, Andrew R. Longmore, Gregory P. Jenkins
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-018-0600-7

Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant
Cited by: 20
Author(s): Dagmara Sirová, Jiří Bárta, Karel Šimek, Thomas Posch, Jiří Pech, James D. Stone, Jakub Borovec, Lubomír Adamec, Jaroslav Vrba
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36266-7

Obesity Aggravates Acute Pancreatitis via Damaging Intestinal Mucosal Barrier and Changing Microbiota Composition in Rats
Cited by: 23
Author(s): Ya Cheng, Ling Liu, Xiao Ma, Huan Tong, Jinhang Gao, Yang Tai, Libin Huang, Chengwei Tang, Rui Wang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36478-x

Multi-locus DNA metabarcoding of zooplankton communities and scat reveal trophic interactions of a generalist predator
Cited by: 39
Author(s): Emma L. Carroll, Ramón Gallego, Mary A. Sewell, John Zeldis, Louis Ranjard, Howard A. Ross, Leah Tooman, Richard O’Rorke, Richard D. Newcomb, Rochelle Constantine
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph17030689

Inflammatory Biomarkers, Microbiome, Depression, and Executive Dysfunction in Alcohol Users
Cited by: 8
Author(s): Mary Rodríguez-Rabassa, Pablo López, Raphael Sánchez, C. Casquero Hernández, Cesarly Rodríguez, Ronald E. Rodríguez-Santiago, Juan C. Orengo, Vivian Green, Yuichi Yamamura, Vanessa Rivera‐Amill
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph17176392

Effects of the Ionic and Nanoparticle Forms of Cu and Ag on These Metals’ Bioaccumulation in the Eggs and Fry of Rainbow Trout (Oncorhynchus mykiss W.)
Cited by: 3
Author(s): Monika Kowalska‐Góralska, Magdalena Senze, Joanna Łuczyńska, Katarzyna Czyż
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-021-01113-x

Host habitat is the major determinant of the gut microbiome of fish
Cited by: 74
Author(s): Pil Soo Kim, Namsoo Shin, Jae Bong Lee, Min Soo Kim, Tae Woong Whon, Dong Wook Hyun, Ji Hyun Yun, Mi Ja Jung, Joon Yong Kim, Jin‐Woo Bae
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-37162-w

Mixed Viral-Bacterial Infections and Their Effects on Gut Microbiota and Clinical Illnesses in Children
Cited by: 45
Author(s): Shilu Mathew, Maria K. Smatti, Khalid Al Ansari, Gheyath K. Nasrallah, Asmaa A. Al Thani, Hadi M. Yassine
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-020-00872-3

Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites
Cited by: 24
Author(s): Martyna Marynowska, Xavier Goux, David Sillam‐Dussès, Corinne Rouland-Lefèvre, Rashi Halder, Paul Wilmes, Piotr Gawron, Yves Roisin, Philippe Delfosse, Magdalena Całusińska
Software Mentions: 1
Published: about 6 years ago

10.3390/ijerph17186848

Effects of Heavy Metals in Lake Water and Sediments on Bottom Invertebrates Inhabiting the Brackish Coastal Lake Łebsko on the Southern Baltic Coast
Cited by: 21
Author(s): Natalia Mrozińska, Martyna Bąkowska
Software Mentions: 1
Published: almost 6 years ago

10.1186/2049-2618-2-28

Cell-associated bacteria in the human lung microbiome
Cited by: 66
Author(s): Robert P. Dickson, John R. Erb-Downward, Hallie C. Prescott, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-018-37914-8

Mapping the Surface Microbiome and Metabolome of Brown Seaweed Fucus vesiculosus by Amplicon Sequencing, Integrated Metabolomics and Imaging Techniques
Cited by: 39
Author(s): Delphine Parrot, Martina Blümel, Caroline Utermann, Giuseppina Chianese, Stefan Krause, Alexander Kovalev, Stanislav N. Gorb, Deniz Taşdemir
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-38541-7

Short-term response of the soil bacterial community to differing wildfire severity in Pinus tabulaeformis stands
Cited by: 28
Author(s): Weike Li, Shukui Niu, Xiaodong Liu, Jianming Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-017-0254-x

Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios
Cited by: 177
Author(s): Hein Min Tun, Theodore Konya, Tim K. Takaro, Jeffrey R. Brook, Radha Chari, Catherine J. Field, David S. Guttman, Allan B. Becker, Piush J. Mandhane, Stuart E. Turvey, Padmaja Subbarao, Malcolm R. Sears, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-019-0680-z

Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination
Cited by: 13
Author(s): Junhyung Kim, Jae Ho Guk, Seung Hyun Mun, Jae Uk An, Hyokeun Song, Jinshil Kim, Sangryeol Ryu, Byeonghwa Jeon, Seongbeom Cho
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-014-0064-3

Mapping axillary microbiota responsible for body odours using a culture-independent approach
Cited by: 81
Author(s): Myriam Troccaz, Nadia Gaïa, Sabine Beccucci, Jacques Schrenzel, Isabelle Cayeux, Christian Starkenmann, Vladimir Lazarević
Software Mentions: 1
Published: over 11 years ago

10.3390/ijerph17196963

Exploring the Role of Gut Bacteria in Health and Disease in Preterm Neonates
Cited by: 25
Author(s): Jimmy Kok Foo Lee, Loh Teng‐Hern Tan, Amutha Ramadas, Nurul Syakima Ab Mutalib, Learn‐Han Lee
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-021-01095-w

Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro
Cited by: 3
Author(s): Jeong‐A Kim, Bo-Ram Jang, Yu-Ra Kim, You-Chul Jung, Kun-Soo Kim, Kyung-Jo Lee
Software Mentions: 1
Published: about 5 years ago

10.3390/biom10050797

Study of Synthesis Pathways of the Essential Polyunsaturated Fatty Acid 20:5n-3 in the Diatom Chaetoceros Muelleri Using 13C-Isotope Labeling
Cited by: 14
Author(s): Marine Remize, F. Planchon, Andrew Loh, Fabienne Le Grand, Antoine Bideau, Nelly Le Goïc, Elodie Fleury, Philippe Miner, Rudolph Corvaisier, Aswani K. Volety, Philippe Soudant
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-020-00991-x

Antibiotic-associated dysbiosis affects the ability of the gut microbiota to control intestinal inflammation upon fecal microbiota transplantation in experimental colitis models
Cited by: 46
Author(s): Francesco Strati, Meritxell Pujolassos, Claudia Burrello, Maria Rita Giuffrè, Georgia Lattanzi, Flavio Caprioli, Jacopo Troisi, Federica Facciotti
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-019-0739-x

Testing the relationship between microbiome composition and flux of carbon and nutrients in Caribbean coral reef sponges
Cited by: 30
Author(s): Shelby E. Gantt, Steven E. McMurray, Amber D. Stubler, Christopher M. Finelli, Joseph R. Pawlik, Patrick M. Erwin
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu12072127

Circulating Short-Chain Fatty Acids Are Positively Associated with Adiposity Measures in Chinese Adults
Cited by: 17
Author(s): Yiqing Wang, Huijun Wang, Annie Green Howard, Katie A. Meyer, Matthew C. B. Tsilimigras, Christy L. Avery, Sha Wang, Shan Sun, Jiguo Zhang, Chang Su, Bing Zhang, Anthony A. Fodor
Software Mentions: 1
Published: about 6 years ago

10.1186/s40168-017-0312-4

Statin therapy causes gut dysbiosis in mice through a PXR-dependent mechanism
Cited by: 116
Author(s): José A. Caparrós-Martín, Ricky R. Lareu, Joshua P. Ramsay, Jörg Peplies, F. Jerry Reen, Henrietta A. Headlam, Natalie C. Ward, Kevin D. Croft, Philip Newsholme, Jeffery Hughes, Fergal O’Gara
Software Mentions: 1
Published: about 9 years ago

10.1186/s40168-017-0257-7

Symbiosis and microbiome flexibility in calcifying benthic foraminifera of the Great Barrier Reef
Cited by: 33
Author(s): Martina Prazeres, Tracy D. Ainsworth, Thomas E. Roberts, John M. Pandolfi, William Leggat
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-39521-7

Soil bacterial diversity is positively associated with air temperature in the maritime Antarctic
Cited by: 32
Author(s): Paul G. Dennis, Kevin K. Newsham, Steven Rushton, Anthony G. OˈDonnell, D. W. Hopkins
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-015-0129-y

A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses
Cited by: 49
Author(s): Thomas Weinmaier, Alexander J. Probst, Myron T. La Duc, Doina Ciobanu, Jan‐Fang Cheng, Natalia Ivanova, Thomas Rattei, Parag Vaishampayan
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-019-39163-9

Host plant and population source drive diversity of microbial gut communities in two polyphagous insects
Cited by: 86
Author(s): Arthur C. Jones, Charles J. Mason, Gary W. Felton, Kelli Hoover
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-018-0519-z

The wild side of plant microbiomes
Cited by: 159
Author(s): Juan E. Pérez‐Jaramillo, Víctor J. Carrión, Mattias de Hollander, Jos M. Raaijmakers
Software Mentions: 1
Published: about 8 years ago

10.1093/aobpla/plu056

Belowground legacies of Pinus contorta invasion and removal result in multiple mechanisms of invasional meltdown
Cited by: 70
Author(s): Ian A. Dickie, Mark G. St. John, G. W. Yeates, Chris W. Morse, Karen I. Bonner, Kate H. Orwin, Duane A. Peltzer
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-019-40315-0

Fiddler crab bioturbation determines consistent changes in bacterial communities across contrasting environmental conditions
Cited by: 49
Author(s): Jenny Marie Booth, Marco Fusi, Ramona Marasco, Tumeka Mbobo, Daniele Daffonchio
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39711-3

Increasing predation risk with light reduces speed, exploration and visit duration of invasive ship rats (Rattus rattus)
Cited by: 12
Author(s): Bridgette Farnworth, Richard Meitern, John Innes, Joseph R. Waas
Software Mentions: 1
Published: over 7 years ago

10.3390/antiox9070640

The Interaction between Mitochondrial Oxidative Stress and Gut Microbiota in the Cardiometabolic Consequences in Diet-Induced Obese Rats
Cited by: 23
Author(s): Adriana Ortega‐Hernández, Ernesto Martínez‐Martínez, Rubén Gómez-Gordo, Natalia López‐Andrés, Amaya Fernández‐Celis, Beatriz Gutiérrrez-Miranda, Marı́a Luisa Nieto, Teresa Alarcón, Claudio Alba, Dulcenombre Gómez-Garré, Victoria Cachofeiro
Software Mentions: 1
Published: about 6 years ago

10.3390/ijerph18115667

Assessment of Irrigation Water Use Efficiency in Citrus Orchards Using AHP
Cited by: 5
Author(s): Rocío Poveda-Bautista, Bernat Roig Merino, H. Puerto, Juan Buitrago‐Vera
Software Mentions: 1
Published: about 5 years ago

10.1186/s40168-018-0469-5

Low-abundant bacteria drive compositional changes in the gut microbiota after dietary alteration
Cited by: 69
Author(s): Jacquelynn Benjamino, Stephen R. Lincoln, Ranjan Srivastava, Joerg Graf
Software Mentions: 1
Published: over 8 years ago

10.1186/s40168-019-0728-0

Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets
Cited by: 47
Author(s): Peter Kusstatscher, Christin Zachow, Karsten Harms, Johann Maier, Herbert Eigner, Gabriele Berg, Tomislav Cernava
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-41149-6

Gut microbiota profile in children affected by atopic dermatitis and evaluation of intestinal persistence of a probiotic mixture
Cited by: 96
Author(s): Sofia Reddel, Federica Del Chierico, Andrea Quagliariello, Simona Giancristoforo, Pamela Vernocchi, Alessandra Russo, Alessandro Fiocchi, Paolo Rossi, Lorenza Putignani, May El Hachem
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-018-0547-8

Dichotomous development of the gut microbiome in preterm infants
Cited by: 49
Author(s): Thao Ho, Maureen Groër, Bradley Kane, Alyson L. Yee, Benjamin A. Torres, Jack A. Gilbert, Akhil Maheshwari
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-41597-0

Longitudinal development of the airway microbiota in infants with cystic fibrosis
Cited by: 19
Author(s): B. Ahmed, Michael J. Cox, Leah Cuthbertson, Phillip James, Woc Cookson, Jane C. Davies, Miriam F. Moffatt, Andrew Bush
Software Mentions: 1
Published: over 7 years ago

10.1186/s13756-021-00915-w

Investigating potential transmission of antimicrobial resistance in an open-plan hospital ward: a cross-sectional metagenomic study of resistome dispersion in a lower middle-income setting
Cited by: 1
Author(s): Anushia Ashokan, Josh Hanson, Ne Myo Aung, Mar Mar Kyi, Steven Taylor, Jocelyn M. Choo, Erin Flynn, Fredrick M. Mobegi, Morgyn S. Warner, Steve Wesselingh, Mark Boyd, Geraint B. Rogers
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10070890

A Vegetarian Diet Is a Major Determinant of Gut Microbiota Composition in Early Pregnancy
Cited by: 70
Author(s): Helen L. Barrett, Luisa F. Gomez-Arango, Shelley A. Wilkinson, H. David McIntyre, Leonie K. Callaway, Mark Morrison, Marloes Dekker Nitert
Software Mentions: 1
Published: about 8 years ago

10.3390/ijerph18179042

Contamination of Hospital Surfaces with Bacterial Pathogens under the Current COVID-19 Outbreak
Cited by: 5
Author(s): Andrei A. Pochtovyi, Daria V. Vasina, Daria D. Kustova, Elizaveta V. Divisenko, Nadezhda A. Kuznetsova, О. А. Бургасова, Л В Колобухина, Artem P. Tkachuk, Vladimir A. Gushchin, Alexander L. Gintsburg
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-42329-0

In situ response of Antarctic under-ice primary producers to experimentally altered pH
Cited by: 13
Author(s): Vonda J. Cummings, Neill Barr, R. G. Budd, Peter Marriott, Karl Safi, Andrew M. Lohrer
Software Mentions: 1
Published: over 7 years ago

10.2196/14771

Targeting the Infant Gut Microbiota Through a Perinatal Educational Dietary Intervention: Protocol for a Randomized Controlled Trial
Cited by: 9
Author(s): Samantha L. Dawson, Jeffrey M. Craig, Gerard Clarke, Mohammadreza Mohebbi, Phillip Dawson, Mimi L.K. Tang, Felice N. Jacka
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40168-015-0135-0

Microbial biogeography of a university campus
Cited by: 27
Author(s): Ashley A. Ross, Josh D. Neufeld
Software Mentions: 1
Published: over 10 years ago

10.1186/s40168-018-0530-4

Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet
Cited by: 88
Author(s): Marlène Chiarello, Jean-Christophe Auguet, Yvan Bettarel, Corinne Bouvier, Thomas Claverie, Nicholas A. J. Graham, Fabien Rieuvilleneuve, Elliot Sucré, Thierry Bouvier, Sébastien Villéger
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-017-0269-3

Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease
Cited by: 108
Author(s): Sahil Khanna, Yoshiki Vázquez-Baeza, Antonio González, Sophie Weiss, Bradley Schmidt, David A. Muñiz-Pedrogo, John F. Rainey, Patricia P. Kammer, Heidi Nelson, Michael J. Sadowsky, Alexander Khoruts, Stefan L. Farrugia, Rob Knight, Darrell S. Pardi, Purna C. Kashyap
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-017-0368-1

Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment
Cited by: 34
Author(s): Sepideh Pakpour, Amit Bhanvadia, Roger Zhu, Abhimanyu Amarnani, Sean M. Gibbons, Thomas Gurry, Eric J. Alm, Laura Martello
Software Mentions: 1
Published: almost 9 years ago

10.1002/mbo3.1129

Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens
Cited by: 6
Author(s): Jan Zrimec
Software Mentions: 1
Published: almost 6 years ago

10.1002/mbo3.253

Spatial distribution of marine airborne bacterial communities
Cited by: 51
Author(s): Jasmin Sabrina Seifried, Antje Wichels, Gunnar Gerdts
Software Mentions: 1
Published: over 11 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292