cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1093/plankt/fbaa026

Seasonal variability of the fatty acid composition in Aurelia aurita (Cnidaria: Scyphozoa): implications for gelativore food web studies
Cited by: 11
Author(s): Vanessa I. Stenvers, Xupeng Chi, Jamileh Javidpour
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.01803

The Association Between Inflammaging and Age-Related Changes in the Ruminal and Fecal Microbiota Among Lactating Holstein Cows
Cited by: 16
Author(s): Guoxing Zhang, Yachun Wang, Hanpeng Luo, Qiu Wan-hua, Hai-Liang Zhang, Lirong Hu, Yajing Wang, Ganghui Dong, Gang Guo
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01894

NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient
Cited by: 31
Author(s): C. Ryan Penton, Caiyun Yang, Liyou Wu, Qiong Wang, Jin Zhang, Feifei Liu, Yujia Qin, Ye Deng, Christopher L. Hemme, Tao Zheng, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2019.00808

Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development
Cited by: 19
Author(s): Pierre Methou, Iván Hernández-Ávila, Johanne Aubé, Valérie Cueff-Gauchard, Nicolas Gayet, Louis Amand, Bruce Shillito, Florence Pradillon, Marie-Anne Cambon-Bonavita
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.722626

Fungi-Bacteria Associations in Wilt Diseased Rhizosphere and Endosphere by Interdomain Ecological Network Analysis
Cited by: 14
Author(s): Lin Tan, Weiai Zeng, Yansong Xiao, Pengfei Li, Shuhang Gu, Shaolong Wu, Zhengguang Zhai, Kai Feng, Ye Deng, Qiulong Hu
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2021.657754

Venomous Snakes Reveal Ecological and Phylogenetic Factors Influencing Variation in Gut and Oral Microbiomes
Cited by: 11
Author(s): Sierra N. Smith, Timothy J. Colston, Cameron D. Siler
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0232831

Organic acid blend supplementation increases butyrate and acetate production in Salmonella enterica serovar Typhimurium challenged broilers
Cited by: 20
Author(s): Mashael R. Aljumaah, Manal M. Alkhulaifi, Alaeldein M. Abudabos, Abdulaziz Alabdullatifb, Aarif H. El‐Mubarak, Ali R. Al Suliman, Dragana Stanley
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.617066

Do Long-Term Conservation Pasture Management Practices Influence Microbial Diversity and Antimicrobial Resistant Genes in Runoff?
Cited by: 2
Author(s): Yichao Yang, Amanda J. Ashworth, Lisa M. Durso, Mary C. Savin, Jennifer M. DeBruyn, Kimberly J. Cook, P. Moore, Phillip R. Owens
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-97315-2

Tea plantations and their importance as host plants and hot spots for epiphytic cryptogams
Cited by: 1
Author(s): Grzegorz J. Wolski, Renata Piwowarczyk, Vítězslav Plášek, Martin Kukwa, Karolina Ruraż
Software Mentions: 1
Published: about 3 years ago

10.1093/ofid/ofy289

Effect of Commonly Used Pediatric Antibiotics on Gut Microbial Diversity in Preschool Children in Burkina Faso: A Randomized Clinical Trial
Cited by: 36
Author(s): Catherine E. Oldenburg, Ali Siè, Boubacar Coulibaly, Lucienne Ouermi, Clarisse Dah, Charlemagne Tapsoba, Till Bärnighausen, Kathryn J. Ray, Lina Zhong, Susie Cummings, Elodie Lebas, Thomas M. Lietman, Jeremy D. Keenan, Thuy Doan
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0031757

Population-Level Metrics of Trophic Structure Based on Stable Isotopes and Their Application to Invasion Ecology
Cited by: 292
Author(s): Michelle C. Jackson, Ian Donohue, Andrew L. Jackson, J. Robert Britton, David M. Harper, Jonathan Grey
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2018.00015

Distribution of Archaeal Communities along the Coast of the Gulf of Finland and Their Response to Oil Contamination
Cited by: 25
Author(s): Lijuan Yan, Dan Yu, Nan Hui, Eve Naanuri, Signe Viggor, А. Б. Гафаров, С. Л. Соколов, Ain Heinaru, Martin Romantschuk
Software Mentions: 1
Published: almost 7 years ago

10.1515/biol-2021-0024

The impact of sewage sludge on the fungal communities in the rhizosphere and roots of barley and on barley yield
Cited by: 1
Author(s): Katarína Ondreičková, Michaela Piliarová, Lenka Klčová, Alžběta Žofajová, Jozef Gubiš, Miroslav Horník, Marcela Gubišová, Martina Hudcovicová, Ján Kraic
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.01278

Latitudinal Variation in the Molecular Diversity and Community Composition of Symbiodiniaceae in Coral From the South China Sea
Cited by: 40
Author(s): Biao Chen, Kefu Yu, Jiayuan Liang, Wen Huang, Guanghua Wang, Hongfei Su, Zhenjun Qin, Xueyong Huang, Zhiyi Pan, Wenwen Luo, Yingxin Luo, Yinghui Wang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0206821

Establishing spatial and temporal patterns in Microcystis sediment seed stock viability and their relationship to subsequent bloom development in Western Lake Erie
Cited by: 24
Author(s): Christine Kitchens, Thomas H. Johengen, Timothy W. Davis
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0023744

Low Dynamics, High Longevity and Persistence of Sessile Structural Species Dwelling on Mediterranean Coralligenous Outcrops
Cited by: 64
Author(s): Núria Teixidó, Joaquim Garrabou, J. G. Harmelin
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-021-96856-w

Secondary predation constrains DNA-based diet reconstruction in two threatened shark species
Cited by: 2
Author(s): Mark de Bruyn, Matteo Barbato, Joseph D. DiBattista, Matt K. Broadhurst
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2020.612135

Active Anaerobic Archaeal Methanotrophs in Recently Emerged Cold Seeps of Northern South China Sea
Cited by: 8
Author(s): Tingting Zhang, Xu Xiao, Songze Chen, Jing Zhao, Zongheng Chen, J. Feng, Qianyong Liang, Tommy J. Phelps, Chuanlun Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1098/rsif.2018.0520

Inferring locomotor behaviours in Miocene New World monkeys using finite element analysis, geometric morphometrics and machine-learning classification techniques applied to talar morphology
Cited by: 20
Author(s): Thomas A. Püschel, Jordi Marcè-Nogué, Justin T. Gladman, René Bobe, William I. Sellers
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.01122

Blood Microbial Communities During Pregnancy Are Associated With Preterm Birth
Cited by: 20
Author(s): Young Ah You, Jae Young Yoo, Eun Jin Kwon, Young Ju Kim
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0126854

Integrating Taxonomic, Functional and Phylogenetic Beta Diversities: Interactive Effects with the Biome and Land Use across Taxa
Cited by: 37
Author(s): Julián Martín Corbelli, Gustavo A. Zurita, Julieta Filloy, Juan Pablo Galvis, Natalia I. Vespa, Isabel Bellocq
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.00028

Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community
Cited by: 21
Author(s): Domenico Savio, Philipp Stadler, Georg H. Reischer, Katalin Demeter, Rita Linke, Alfred Paul Blaschke, Robert L. Mach, Alexander K. T. Kirschner, Hermann Stadler, Andreas H. Farnleitner
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.1488

Strategies of zooplanktivory shape the dynamics and diversity of littoral plankton communities: a mesocosm approach
Cited by: 11
Author(s): Laura Helenius, Anna Aymà Padrós, Elina Leskinen, Hannu Lehtonen, Leena Nurminen
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.00176

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core
Cited by: 61
Author(s): D. L. Leite, Pedro N. Leão, Amana Garrido, Ulysses Lins, Henrique F. Santos, Débora O. Pires, Clovis B. Castro, Jan Dirk van Elsas, Carla Zilberberg, Alexandre Soares Rosado, Raquel S. Peixoto
Software Mentions: 1
Published: almost 8 years ago

10.1007/s10340-018-0965-1

Landscape configuration affects herbivore–parasitoid communities in oilseed rape
Cited by: 11
Author(s): Josef Berger, Klaus Birkhofer, Helena I. Hanson, Katarina Hedlund
Software Mentions: 1
Published: almost 7 years ago

10.1098/rsif.2015.0608

Competition for space during bacterial colonization of a surface
Cited by: 54
Author(s): Diarmuid Padraig Lloyd, Rosalind J. Allen
Software Mentions: 1
Published: about 9 years ago

10.1016/j.ophtha.2020.02.014

Post-antibiotic Ocular Surface Microbiome in Children: A Cluster-Randomized Trial
Cited by: 12
Author(s): Thuy Doan, Armin Hinterwirth, Lee Worden, Ahmed M. Arzika, Ramatou Maliki, Cindi Chen, Lina Zhong, Zhaoxia Zhou, Nisha R. Acharya, Travis C. Porco, Jeremy D. Keenan, Thomas M. Lietman
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2017.00175

Diversity and Distribution of Freshwater Aerobic Anoxygenic Phototrophic Bacteria across a Wide Latitudinal Gradient
Cited by: 25
Author(s): Isabel Ferrera, Hugo Sarmento, John C. Priscu, Amy Chiuchiolo, José M. González, Hans‐Peter Grossart
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0247220

Microbial communities developing within bulk sediments under fish carcasses on a tidal flat
Cited by: 3
Author(s): Yasutake Kawamoto, Hiromi Kato, Yasunobu Nagata, Jotaro Urabe
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2020.01403

Repeated Inoculation of Young Calves With Rumen Microbiota Does Not Significantly Modulate the Rumen Prokaryotic Microbiota Consistently but Decreases Diarrhea
Cited by: 18
Author(s): Dengpan Bu, Xin Zhang, Lu Ma, Tansol Park, Lingling Wang, Mengzhi Wang, Jianchu Xu, Zhongtang Yu
Software Mentions: 1
Published: over 4 years ago

10.3390/jpm11020132

Intestinal Dysbiosis in Young Cystic Fibrosis Rabbits
Cited by: 6
Author(s): Xiubin Liang, Mohamad Bouhamdan, Xia Hou, Kezhong Zhang, Jun Song, Ke Hao, Jian‐Ping Jin, Zhongyang Zhang, Jie Xu
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.01655

Fecal and Mucosal Microbiota Profiling in Irritable Bowel Syndrome and Inflammatory Bowel Disease
Cited by: 127
Author(s): Alessandra Lo Presti, Francesca Zorzi, Federica Del Chierico, Annamaria Altomare, Silvia Cocca, Alessandra Avola, Fabiola De Biasio, Alessandra Russo, Eleonora Cella, Sofia Reddel, Emma Calabrese, Livia Biancone, Giovanni Monteleone, Michele Cicala, Silvia Angeletti, Massimo Ciccozzi, Lorenza Putignani, Michele Pier Luca Guarino
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0104996

Random Whole Metagenomic Sequencing for Forensic Discrimination of Soils
Cited by: 38
Author(s): Anastasia S. Khodakova, Renee J. Smith, Leigh A. Burgoyne, Damien Abarno, Adrian Linacre
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-98068-8

Phenology of Oithona similis demonstrates that ecological flexibility may be a winning trait in the warming Arctic
Cited by: 11
Author(s): Kaja Balazy, Rafał Boehnke, Emilia Trudnowska, Janne E. Søreide, Katarzyna Błachowiak‐Samołyk
Software Mentions: 1
Published: about 3 years ago

10.3390/microorganisms9061333

Clary Sage Cultivation and Mycorrhizal Inoculation Influence the Rhizosphere Fungal Community of an Aged Trace-Element Polluted Soil
Cited by: 3
Author(s): Robin Raveau, Anissa Lounès-Hadj Sahraoui, Mohamed Hijri, Joël Fontaine
Software Mentions: 1
Published: over 3 years ago

10.3390/jpm11020087

Gut-Brain Axis Cross-Talk and Limbic Disorders as Biological Basis of Secondary TMAU
Cited by: 5
Author(s): Luigi Donato, Simona Alibrandi, Concetta Scimone, Andréa Castagnetti, Giacomo Rao, Antonina Sidoti, Rosalia D’Angelo
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-98284-2

Presence and biodistribution of perfluorooctanoic acid (PFOA) in Paracentrotus lividus highlight its potential application for environmental biomonitoring
Cited by: 6
Author(s): Dario Savoca, Raffaella Melfi, Antonio Palumbo Piccionello, Salvatore Barreca, Silvestre Buscemi, Vincenzo Arizza, Marco Arculeo, Andrea Pace
Software Mentions: 1
Published: about 3 years ago

10.1002/ece3.5784

Evaluating the effects of large marine predators on mobile prey behavior across subtropical reef ecosystems
Cited by: 11
Author(s): Lindsay M Phenix, Dana Tricarico, Enrique Quintero, Mark E. Bond, Simon J. Brandl, Austin J. Gallagher
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.01631

Fecal Microbiota Transplantation Is Associated With Reduced Morbidity and Mortality in Porcine Circovirus Associated Disease
Cited by: 34
Author(s): Megan C. Niederwerder, Laura A. Constance, Raymond R. R. Rowland, Waseem Abbas, Samodha C. Fernando, M. L. Potter, Maureen A. Sheahan, Thomas E. Burkey, Richard Hesse, Ada G. Cino‐Ozuna
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0020094

Meiofauna in the Gollum Channels and the Whittard Canyon, Celtic Margin—How Local Environmental Conditions Shape Nematode Structure and Function
Cited by: 73
Author(s): Jeroen Ingels, Alexei V. Tchesunov, Ann Vanreusel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0075079

Strong Stability and Host Specific Bacterial Community in Faeces of Ponies
Cited by: 49
Author(s): Tina Blackmore, Alex Dugdale, Caroline McG. Argo, G. C. Curtis, Eric Pinloche, Pat Harris, Hilary J. Worgan, Susan Elizabeth Girdwood, Kirsty Dougal, C. J. Newbold, Neil McEwan
Software Mentions: 1
Published: about 11 years ago

10.1111/jsr.12920

A brief period of sleep deprivation leads to subtle changes in mouse gut microbiota
Cited by: 22
Author(s): Sahar El Aidy, Youri G Bolsius, Frank Raven, Robbert Havekes
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.01594

Microbial Communities in a Flow-Through Fish Farm for Lumpfish (Cyclopterus lumpus L.) During Healthy Rearing Conditions
Cited by: 19
Author(s): Irene Roalkvam, Karine Drønen, Helge K. Dahle, Heidrun I. Wergeland
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02897

Comparative Microbiome Signatures and Short-Chain Fatty Acids in Mouse, Rat, Non-human Primate, and Human Feces
Cited by: 155
Author(s): Ravinder Nagpal, Shaohua Wang, Leah C. Solberg Woods, Osborne Seshie, Stephanie T. Chung, Carol A. Shively, Thomas C. Register, Suzanne Craft, Donald A. McClain, Hariom Yadav
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.00757

Meal Regularity Plays a Role in Shaping the Saliva Microbiota
Cited by: 5
Author(s): Jannina Viljakainen, Sajan C. Raju, Heli Viljakainen, Rejane Augusta de Oliveira Figueiredo, Eva Roos, Elisabete Weiderpass, Trine B. Rounge
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0174787

Size, age, and habitat determine effectiveness of Palau's Marine Protected Areas
Cited by: 33
Author(s): Alan M. Friedlander, Yimnang Golbuu, Enric Ballesteros, Jennifer E. Caselle, Marine Gouezo, Dawnette Olsudong, Enric Sala
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0105863

Contrasting Light Spectra Constrain the Macro and Microstructures of Scleractinian Corals
Cited by: 15
Author(s): Rui J. M. Rocha, Ana M. B. Silva, María Helena Fernandes, Igor Cristino Silva Cruz, Rui Rosa, Ricardo Calado
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.03062

The Preliminary Development of an in vitro Poultry Cecal Culture Model to Evaluate the Effects of Original XPCTM for the Reduction of Campylobacter jejuni and Its Potential Effects on the Microbiota
Cited by: 14
Author(s): Kristina M. Feye, Peter M. Rubinelli, W. Evan Chaney, Hilary O. Pavlidis, Michael H. Kogut, Steven C. Ricke
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0078910

Coastal Habitats as Surrogates for Taxonomic, Functional and Trophic Structures of Benthic Faunal Communities
Cited by: 31
Author(s): Anna Törnroos, Marie C. Nordström, Erik Bonsdorff
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2021.629852

Exploration of Intrinsic Microbial Community Modulators in the Rice Endosphere Indicates a Key Role of Distinct Bacterial Taxa Across Different Cultivars
Cited by: 7
Author(s): Pei Wang, Xiao Kong, Hongsong Chen, Yutao Xiao, Huijun Liu, Xiaojuan Li, Zhuo Zhang, Xinqiu Tan, Diandong Wang, Decai Jin, Ye Deng, Tomislav Cernava
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2021.661515

Effects of Field Fumigation and Inoculation With the Pecan Truffle (Tuber lyonii) on the Fungal Community of Pecan (Carya illinoinensis) Seedlings Over 5 Years
Cited by: 3
Author(s): Arthur C. Grupe, Michelle A. Jusino, Alija B. Mujic, Brantlee Spakes Richter, Gregory Bonito, T. B. Brenneman, Matthew Smith
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0018078

Biological vs. Physical Mixing Effects on Benthic Food Web Dynamics
Cited by: 41
Author(s): Ulrike Braeckman, Pieter Provoost, Tom Moens, Karline Soetaert, Jack J. Middelburg, Magda Vincx, Jan Vanaverbeke
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2020.00491

Spatio-Temporal and Cultivar-Dependent Variations in the Cannabis Microbiome
Cited by: 23
Author(s): Dominique Comeau, Amy Novinscak, David L. Joly, Martin Filion
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0146122

Effects of Fishing and Fishing Closures on Beach Clams: Experimental Evaluation across Commercially Fished and Non-Fished Beaches before and during Harvesting
Cited by: 13
Author(s): Charles A. Gray
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0139802

Linking Intertidal and Subtidal Food Webs: Consumer-Mediated Transport of Intertidal Benthic Microalgal Carbon
Cited by: 31
Author(s): Chang‐Keun Kang, Hyun Je Park, Eun Jung Choy, Kwang-Sik Choi, Kangseok Hwang, Jongbin Kim
Software Mentions: 1
Published: about 9 years ago

10.3390/jpm10040192

Differential Microbial Pattern Description in Subjects with Autoimmune-Based Thyroid Diseases: A Pilot Study
Cited by: 26
Author(s): Isabel Cornejo‐Pareja, P. Ruiz-Limón, Ana María Gómez Pérez, María Molina-Vega, Isabel Moreno-Indias, Francisco J. Tinahones
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2018.00355

Zooplankton From a Reef System Under the Influence of the Amazon River Plume
Cited by: 23
Author(s): Sigrid Neumann‐Leitão, Pedro Augusto Mendes de Castro Melo, Ralf Schwamborn, Xiomara Franchesca García Díaz, Lucas Guedes Pereira Figueirêdo, Andrea P Silva, Renata P. S. Campelo, Mauro de Meló Júnior, Nuno Filipe Alves Correia de Melo, Alejandro Esteweson Santos Faustino da Costa, Moacyr Araújo, Dóris Veleda, Rodrigo L. Moura, Fabiano L. Thompson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.00317

Compositional Stability of the Bacterial Community in a Climate-Sensitive Sub-Arctic Peatland
Cited by: 14
Author(s): James T. Weedon, George A. Kowalchuk, Rien Aerts, Stef Freriks, Wilfred F. M. Röling, Peter M. van Bodegom
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms8111683

Microbial Origin of Aquaponic Water Suppressiveness against Pythium aphanidermatum Lettuce Root Rot Disease
Cited by: 12
Author(s): Gilles Stouvenakers, Sébastien Massart, Pierre Depireux, M. Haïssam Jijakli
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0098700

The Seeding and Cultivation of a Tropical Species of Filamentous Ulva for Algal Biomass Production
Cited by: 36
Author(s): Christina Carl, Rocky de Nys, Nicholas A. Paul
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.00651

Fungi Originating From Tree Leaves Contribute to Fungal Diversity of Litter in Streams
Cited by: 19
Author(s): Pirjo Koivusaari, Mysore V. Tejesvi, Mikko Tolkkinen, Annamari Markkola, Heikki Mykrä, Anna Maria Pirttilä
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0125475

Purple Pitcher Plant (Sarracenia rosea) Dieback and Partial Community Disassembly following Experimental Storm Surge in a Coastal Pitcher Plant Bog
Cited by: 8
Author(s): Matthew J. Abbott, Loretta L. Battaglia
Software Mentions: 1
Published: over 9 years ago

10.1186/s13023-020-01612-4

Gut microbiome signature of Viliuisk encephalomyelitis in Yakuts includes an increase in microbes linked to lean body mass and eating behaviour
Cited by: 2
Author(s): Veronika S Kuznetsova, Alexander Tyakht, Lyudmila V Akhmadishina, Vera Odintsova, Natalia Klimenko, Elena S. Kostryukova, Maria T. Vakhitova, Tatiana V. Grigoryeva, Sergey Malanin, Vsevolod A. Vladimirtsev, Raisa S. Nikitina, Viktor P. Volok, Vladimir L. Osakovskiy, Tatyana M. Sivtseva, F.A. Platonov, Dmitry Alexeev, Galina G. Karganova
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2016.01446

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies
Cited by: 394
Author(s): Davide Francioli, Elke Schulz, Guillaume Lentendu, Tesfaye Wubet, François Buscot, Thomas Reitz
Software Mentions: 1
Published: about 8 years ago

10.1186/s12967-021-03040-9

Alterations of gut microbiota in gestational diabetes patients during the second trimester of pregnancy in the Shanghai Han population
Cited by: 11
Author(s): Yao Su, Hongkun Wang, Xu-Pei Gan, Li Chen, Yannan Cao, De-Cui Cheng, Dong-Yao Zhang, Wen Yu, Feifei Li, Xiao Xu
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2017.01127

Temporal Dynamics of Soil Microbial Communities below the Seedbed under Two Contrasting Tillage Regimes
Cited by: 100
Author(s): Florine Degrune, Nicolas Theodorakopoulos, Gilles Colinet, Marie-Pierre Hiel, Bernard Bodson, Bernard Taminiau, Georges Daube, Micheline Vandenbol, Martin Hartmann
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00350

An Endohyphal Bacterium (Chitinophaga, Bacteroidetes) Alters Carbon Source Use by Fusarium keratoplasticum (F. solani Species Complex, Nectriaceae)
Cited by: 58
Author(s): Justin P. Shaffer, Jana M. U’Ren, Rachel E. Gallery, David A. Baltrus, A. Elizabeth Arnold
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.02396

Protective Effect of Pediococcus pentosaceus LI05 Against Clostridium difficile Infection in a Mouse Model
Cited by: 25
Author(s): Qiaomai Xu, Silan Gu, Yunbo Chen, Jiazheng Quan, Longxian Lv, Runsheng Chen, Beiwen Zheng, Lichen Xu, Lanjuan Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2015.01092

The effect of diet and host genotype on ceca microbiota of Japanese quail fed a cholesterol enriched diet
Cited by: 18
Author(s): Shasha Li, Darin C. Bennett, Hein Min Tun, Jieun Kim, Kimberly M. Cheng, Hongfu Zhang, Fung Ping Leung
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01371

Temporal Microbial Community Dynamics in Microbial Electrolysis Cells – Influence of Acetate and Propionate Concentration
Cited by: 23
Author(s): Ananda Rao Hari, Krishnaveni Venkidusamy, Krishna P. Katuri, Samik Bagchi, Pascal E. Saikaly
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0172366

Regime shifts in coastal lagoons: Evidence from free-living marine nematodes
Cited by: 21
Author(s): Sérgio A. Netto, Gustavo Fonseca
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.00171

Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes
Cited by: 56
Author(s): Jacquelynn Benjamino, Joerg Graf
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2021.570908

Nitrogen Deposition Reduces the Diversity and Abundance of cbbL Gene-Containing CO2-Fixing Microorganisms in the Soil of the Stipa baicalensis Steppe
Cited by: 10
Author(s): Jie Qin, Ming Li, Haifang Zhang, Hongmei Liu, Junjie Zhao, Yang Dian-lin
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.00557

Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom
Cited by: 49
Author(s): Laura Perini, Cene Gostinčar, Alexandre M. Anesio, Christopher Williamson, Martyn Tranter, Nina Gunde‐Cimerman
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.562560

High-Throughput Sequencing Approach to Analyze the Effect of Aging Time and Barrel Usage on the Microbial Community Composition of Red Wines
Cited by: 7
Author(s): Dimitrios Kioroglou, Albert Mas, María del Carmen Portillo Guisado
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2018.01400

Diversity of Fungal Communities in Heshang Cave of Central China Revealed by Mycobiome-Sequencing
Cited by: 20
Author(s): Baiying Man, Hongmei Wang, Yuan Yun, Xiang Xiao, Ruicheng Wang, Yonggang Duan, Xiaoyu Cheng
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.01130

VarR controls colonization and virulence in the marine macroalgal pathogen Nautella italica R11
Cited by: 17
Author(s): Melissa Gardiner, Neil D. Fernandes, Dennis Nowakowski, Mark J. Raftery, Staffan Kjelleberg, Ling Zhong, Torsten Thomas, Suhelen Egan
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2019.02262

Similar Shift Patterns in Gut Bacterial and Fungal Communities Across the Life Stages of Bactrocera minax Larvae From Two Field Populations
Cited by: 26
Author(s): Zhichao Yao, Qiongke Ma, Zhaohui Cai, Muhammad Fahim Raza, Shuai Bai, Yichen Wang, Ping Zhang, Hua Ma, Hongyu Zhang
Software Mentions: 1
Published: about 5 years ago

10.1093/conphys/coy019

Interacting with wildlife tourism increases activity of white sharks
Cited by: 31
Author(s): Charlie Huveneers, Yuki Watanabe, Nicholas L. Payne, Jayson M. Semmens
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnut.2018.00028

Gut Microbiome Composition in Non-human Primates Consuming a Western or Mediterranean Diet
Cited by: 107
Author(s): Ravinder Nagpal, Carol A. Shively, Susan A Appt, Thomas C. Register, Kristofer T. Michalson, Mara Z. Vitolins, Hariom Yadav
Software Mentions: 1
Published: over 6 years ago

10.3389/fnut.2020.615003

Metabolic and Gut Microbiota Responses to Sourdough Pasta Consumption in Overweight and Obese Adults
Cited by: 4
Author(s): Saleh Shah, Paul D. Brown, Shyamchand Mayengbam, Michael G. Gänzle, Weilan Wang, Chunlong Mu, Silvio Lettrari, Craig Bertagnolli, Jane Shearer
Software Mentions: 1
Published: almost 4 years ago

10.1111/jre.12642

Qualitative and quantitative differences in the subgingival microbiome of the restored and unrestored teeth
Cited by: 9
Author(s): Steven W. H. Rademacher, Egija Zaura, Cornelis J. Kleverlaan, Mark J. Buijs, Wim Crielaard, Bruno G. Loos, Marja L. Laine
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnut.2019.00120

Early-Life Iron Deficiency and Subsequent Repletion Alters Development of the Colonic Microbiota in the Pig
Cited by: 14
Author(s): Laura C. Knight, Mei Wang, Sharon M. Donovan, Ryan N. Dilger
Software Mentions: 1
Published: over 5 years ago

10.3389/fnut.2021.705763

Probiotic Effects of Lactobacillus fermentum ZJUIDS06 and Lactobacillus plantarum ZY08 on Hypercholesteremic Golden Hamsters
Cited by: 22
Author(s): Dongting Yang, Wentao Lyu, Zhengqiang Hu, Jiting Gao, Zhiyao Zheng, Weijun Wang, Jenni Firrman, Dawei Ren
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.25276

Both the intratumoral immune and microbial microenvironment are linked to recurrence in human colon cancer: results from a prospective, multicenter nodal ultrastaging trial
Cited by: 5
Author(s): Juliana Noguti, Alfred A. Chan, B Bandera, Colin Brislawn, Mladjan Protić, Myung Shin Sim, Janet Jansson, Anton J. Bilchik, Delphine J. Lee
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.21490

Breast tissue, oral and urinary microbiomes in breast cancer
Cited by: 116
Author(s): Hannah Wang, Jessica Altemus, Feizollah Niazi, Holly Green, Benjamin C. Calhoun, Charles D. Sturgis, Stephen R. Grobmyer, Charis Eng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0193727

Timing of embryonic quiescence determines viability of embryos from the calanoid copepod, Acartia tonsa (Dana)
Cited by: 11
Author(s): Birgitte Nilsson, Benni Winding Hansen
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.614448

Dysbiosis of Oral Microbiota During Oral Squamous Cell Carcinoma Development
Cited by: 43
Author(s): Purandar Sarkar, Samaresh Malik, Sayantan Laha, Shantanab Das, Soumya Bunk, Jharna Ray, Raghunath Chatterjee, Abhik Saha
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.02722

Eukaryotic Phytoplankton Contributing to a Seasonal Bloom and Carbon Export Revealed by Tracking Sequence Variants in the Western North Pacific
Cited by: 10
Author(s): Takuhei Shiozaki, Yuu Hirose, Koji Hamasaki, Ryo Kaneko, K. Ishikawa, Naomi Harada
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.644046

Evaluation of Phenolic Root Exudates as Stimulants of Saptrophic Fungi in the Rhizosphere
Cited by: 15
Author(s): Anna Clocchiatti, S. Emilia Hannula, Marlies van den Berg, Maria P. J. Hundscheid, Wietse de Boer
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0221091

Species composition of arbuscular mycorrhizal communities changes with elevation in the Andes of South Ecuador
Cited by: 12
Author(s): Ingeborg Haug, Sabrina Setaro, Juan Pablo Suárez
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2019.01684

Alpha-Glucosidase Inhibitors Alter Gut Microbiota and Ameliorate Collagen-Induced Arthritis
Cited by: 22
Author(s): Lingshu Zhang, Pingfang Song, Xiaowei Zhang, Christina Metea, Matthew Schleisman, Lisa Karstens, Eric T. Leung, Jun Zhang, Qiang Xu, Yi Liu, Mark Asquith, Cong Qiu Chu
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.isci.2021.103113

Postnatal prebiotic supplementation in rats affects adult anxious behaviour, hippocampus, electrophysiology, metabolomics, and gut microbiota
Cited by: 5
Author(s): Sonia Spitzer, Andrzej Tkacz, Hélène M. Savignac, Matthew J. Cooper, Natasa Giallourou, Edward O. Mann, David M. Bannerman, Jonathan R. Swann, Daniel C. Anthony, Philip S. Poole, Philip W. J. Burnet
Software Mentions: 1
Published: about 3 years ago

10.3389/fphar.2021.665881

Anti-Obesity Effect of Fermented Panax notoginseng Is Mediated Via Modulation of Appetite and Gut Microbial Population
Cited by: 5
Author(s): Na Rae Shin, Shambhunath Bose, Yura Choi, Youngmi Kim, Young‐Won Chin, Eun-Ji Song, Young-Do Nam, Hojun Kim
Software Mentions: 1
Published: over 3 years ago

10.1002/ece3.7787

Drivers of litter mass loss and faunal composition of detritus patches change over time
Cited by: 3
Author(s): Franziska K. Seer, Gregor Putze, Steven C. Pennings, Martin Zimmer
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2020.569402

The Effects of Gum Acacia on the Composition of the Gut Microbiome and Plasma Levels of Short-Chain Fatty Acids in a Rat Model of Chronic Kidney Disease
Cited by: 14
Author(s): Maha Al-Asmakh, Muhammad Sohail, Ola Al-Jamal, Banan Mosaad Shoair, Asmaa Yousef Al-Baniali, Salma Bouabidi, Shahd Nasr, Hiba Bawadi
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0044859

Macroalgal Extracts Induce Bacterial Assemblage Shifts and Sublethal Tissue Stress in Caribbean Corals
Cited by: 55
Author(s): Kathleen M. Morrow, Raphael Ritson‐Williams, Cliff Ross, Mark R. Liles, Valerie J. Paul
Software Mentions: 1
Published: about 12 years ago

10.3390/microorganisms9040702

Gut Microbiome of a Multiethnic Community Possessed No Predominant Microbiota
Cited by: 3
Author(s): Wei Wei Thwe Khine, Anna Hui Ting Teo, Lucas Wee Wei Loong, Jarett Jun Hao Tan, Clarabelle Geok Hui Ang, W. F. Ng, Chuen Neng Lee, Congju Zhu, Quek Choon Lau, Yuan‐Kun Lee
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2020.00833

Integrated Metagenomic and Metabolomic Analyses of the Effect of Astragalus Polysaccharides on Alleviating High-Fat Diet–Induced Metabolic Disorders
Cited by: 47
Author(s): Ying Hong, Bingbing Li, Ningning Zheng, Gaosong Wu, Junli Ma, Xin Tao, Linlin Chen, Jing Zhong, Lili Sheng, Houkai Li
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.659079

Microbial Communities and Interactions of Nitrogen Oxides With Methanogenesis in Diverse Peatlands of the Amazon Basin
Cited by: 7
Author(s): Steffen Buessecker, Zacary Zamora, Analissa F. Sarno, Damien Finn, Alison M. Hoyt, Joost van Haren, José David Urquiza Muñoz, Hinsby Cadillo‐Quiroz
Software Mentions: 1
Published: over 3 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292