10.1371/journal.pone.0096363

Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species
Cited by: 28
Author(s): Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Amane Hidaka, Kohmei Kadowaki, Hirokazu Toju
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2017.02709

Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics
Cited by: 304
Author(s): Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00035

Offspring Microbiomes Differ Across Breeding Sites in a Panmictic Species
Cited by: 28
Author(s): Mark A. F. Gillingham, Arnaud Béchet, Frank Cézilly, Kerstin Wilhelm, Manuel Rendón‐Martos, Fabrizio Borghesi, Sergio Nissardi, Nicola Baccetti, Hichem Azafzaf, Sebastian Menke, Yves Kayser, Simone Sommer
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0208327

Bacterial microbiome of the chigger mite Leptotrombidium imphalum varies by life stage and infection with the scrub typhus pathogen Orientia tsutsugamushi
Cited by: 13
Author(s): Loganathan Ponnusamy, Alexandra C Willcox, R. Michael Roe, Silas A. Davidson, Piyada Linsuwanon, Anthony L. Schuster, Allen L. Richards, Steven R. Meshnick, Charles S. Apperson
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.01227

Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract
Cited by: 146
Author(s): Francesco Strati, Monica Di Paola, Irene Stefanini, Davide Albanese, Lisa Rizzetto, Paolo Lionetti, Antonino Calabrò, Olivier Jousson, Claudio Donati, Duccio Cavalieri, Carlotta De Filippo
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-020-80859-0

Differences in the bacteriome of swab, saliva, and tissue biopsies in oral cancer
Cited by: 25
Author(s): Divya Gopinath, Rohit Kunnath Menon, Chun Wie Chong, Moinak Banerjee, Swagatika Panda, Deviprasad Mandal, Paresh Kumar Behera, Susanta Roychoudhury, Supriya Kheur, MG Botelho, Newell W. Johnson
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02661

Tissue-Specific Microbiomes of the Red Sea Giant Clam Tridacna maxima Highlight Differential Abundance of Endozoicomonadaceae
Cited by: 14
Author(s): Susann Rossbach, Anny Cárdenas, Gabriela Perna, Carlos M. Duarte, Christian R. Voolstra
Software Mentions: 2
Published: almost 7 years ago

10.3390/nu12082364

Gut Microbiota Associations with Metabolic Health and Obesity Status in Older Adults
Cited by: 32
Author(s): Xiaozhong Zhong, Janas M. Harrington, Seán Millar, Ivan J. Perry, Paul W. O’Toole, Catherine M. Phillips
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-80278-1

Neonatal intensive care unit (NICU) exposures exert a sustained influence on the progression of gut microbiota and metabolome in the first year of life
Cited by: 9
Author(s): Polly Soo Xi Yap, Chun Wie Chong, Azanna Ahmad Kamar, Ivan Kok Seng Yap, Yao Mun Choo, Nai Ming Lai, Cindy Shuan Ju Teh
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81105-x

The relationships between microbiota and the amino acids and organic acids in commercial vegetable pickle fermented in rice-bran beds
Cited by: 8
Author(s): Kazunori Sawada, Hitoshi Koyano, Nozomi Yamamoto, Takuji Yamada
Software Mentions: 2
Published: over 5 years ago

10.1128/JB.00478-18

Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH
Cited by: 9
Author(s): Tara Gallagher, Joann Phan, Andrew Oliver, Alexander B. Chase, Whitney England, Stephen Wandro, Clark Hendrickson, Stefan Riedel, Katrine Whiteson
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.02664

The Inner Workings of the Outer Surface: Skin and Gill Microbiota as Indicators of Changing Gut Health in Yellowtail Kingfish
Cited by: 107
Author(s): Thibault Philippe Raymond Albert Legrand, Sarah R. Catalano, Melissa L. Wos‐Oxley, Frances Stephens, Matt Landos, Matthew S. Bansemer, David A. Stone, Jianguang Qin, Alan Oxley
Software Mentions: 2
Published: over 8 years ago

10.3390/nu9040393

Differential Effect of Sucrose and Fructose in Combination with a High Fat Diet on Intestinal Microbiota and Kidney Oxidative Stress
Cited by: 64
Author(s): Adriana Rosas-Villegas, Mónica Sánchez‐Tapia, Azalia Ávila-Nava, V Mercy Ramírez, Armando R. Tovar, Nimbe Torres
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0137778

Edge Effects along a Seagrass Margin Result in an Increased Grazing Risk on Posidonia australis Transplants
Cited by: 9
Author(s): John Statton, Samuel Gustin-Craig, Kingsley W. Dixon, Gary A. Kendrick
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0077704

The Importance of Vertical and Horizontal Dimensions of the Sediment Matrix in Structuring Nematodes Across Spatial Scales
Cited by: 14
Author(s): Danilo Cândido Vieira, Gustavo Fonseca
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0245995

Rebamipide ameliorates indomethacin-induced small intestinal damage and proton pump inhibitor-induced exacerbation of this damage by modulation of small intestinal microbiota
Cited by: 8
Author(s): Tetsuya Tanigawa, Toshio Watanabe, Akira Higashimori, Sunao Shimada, Hiroyuki Kitamura, Takuya Kuzumoto, Yuji Nadatani, Koji Otani, Shusei Fukunaga, Shuhei Hosomi, Fumio Tanaka, Noriko Kamata, Yasuaki Nagami, Koichi Taira, Masatsugu Shiba, Wataru Suda, Masahira Hattori, Yasuhiro Fujiwara
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82348-4

A synthetic kinematic index of trunk displacement conveying the overall motor condition in Parkinson’s disease
Cited by: 6
Author(s): Emahnuel Troisi Lopez, Roberta Minino, Pierpaolo Sorrentino, Rosaria Rucco, Anna Carotenuto, Valeria Agosti, Domenico Tafuri, Valentino Manzo, Marianna Liparoti, Giuseppe Sorrentino
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82538-0

Alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
Cited by: 83
Author(s): Taraprasad Das, Rajagopalaboopathi Jayasudha, SamaKalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Savitri Sharma, Sisinthy Shivaji
Software Mentions: 2
Published: over 5 years ago

10.1038/s41385-021-00399-2

Emc3 maintains intestinal homeostasis by preserving secretory lineages
Cited by: 9
Author(s): Meina Huang, Yang Li, Ning Jiang, Quanhui Dai, Li R, Zhaocai Zhou, Bing Zhao, Xinhua Lin
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0245936

A DNA metabarcoding approach for recovering plankton communities from archived samples fixed in formalin
Cited by: 9
Author(s): Takuhei Shiozaki, Fumihiro Itoh, Yuu Hirose, Jonaotaro Onodera, Akira Kuwata, Naomi Harada
Software Mentions: 2
Published: over 5 years ago

10.3390/nu12113451

Maternal Linoleic Acid Overconsumption Alters Offspring Gut and Adipose Tissue Homeostasis in Young but Not Older Adult Rats
Cited by: 3
Author(s): Justine Marchix, Charlène Alain, Sandrine Le Gall‐David, Luis A. Amador, Céline Druart, Nathalie M. Delzenne, Frédérique Barloy-Hubler, Philippe Legrand, Gaëlle Boudry
Software Mentions: 2
Published: almost 6 years ago

10.1038/ismej.2017.1

Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
Cited by: 90
Author(s): Sang Hoon Lee, Jackson W Sorensen, Keara L. Grady, Tammy C Tobin, Ashley Shade
Software Mentions: 2
Published: over 9 years ago

10.7150/jca.54221

Alterations of bacterial communities of vocal cord mucous membrane increases the risk for glottic laryngeal squamous cell carcinoma
Cited by: 6
Author(s): Zhen Dong, Chunming Zhang, Qinli Zhao, Hongxiang Hui, Xuting Xue, Shuxin Wen, Yongyan Wu, Wei Gao, Binquan Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.01636

Variations in Soil Functional Fungal Community Structure Associated With Pure and Mixed Plantations in Typical Temperate Forests of China
Cited by: 33
Author(s): Di Wu, Mengmeng Zhang, Mu Peng, Xin Sui, Li Wei, Guodao Sun
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-82482-z

Meta-analysis cum machine learning approaches address the structure and biogeochemical potential of marine copepod associated bacteriobiomes
Cited by: 9
Author(s): Balamurugan Sadaiappan, Chinnamani PrasannaKumar, V. Uthara Nambiar, Mahendran Subramanian, Mangesh Gauns
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0197753

Oyster aquaculture impacts Zostera marina epibiont community composition in Akkeshi-ko estuary, Japan
Cited by: 10
Author(s): Charles S. Smith, Minako Ito, Mizuho Namba, Masahiro Nakaoka
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.01890

Comparative Microbiomics of Tephritid Frugivorous Pests (Diptera: Tephritidae) From the Field: A Tale of High Variability Across and Within Species
Cited by: 20
Author(s): Maarten De Cock, M. Virgilio, Peter Vandamme, Kostas Bourtzis, M. De Meyer, Anne Willems
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-83286-x

Rainfall as a trigger of ecological cascade effects in an Australian groundwater ecosystem
Cited by: 16
Author(s): Mattia Saccò, Alison J. Blyth, William F. Humphreys, Steven J. Cooper, Nicole E. White, Matthew A. Campbell, Mahsa Mousavi‐Derazmahalleh, Quan Hua, Debashish Mazumder, Colin Smith, Christian Griebler, Kliti Grice
Software Mentions: 2
Published: over 5 years ago

10.1007/s10886-020-01156-8

Soil Inoculation Alters Leaf Metabolic Profiles in Genetically Identical Plants
Cited by: 4
Author(s): Martine Huberty, Beverly Martis, Jorian van Kampen, Young Hae Choi, Klaas Vrieling, Peter G. L. Klinkhamer, T. Martijn Bezemer
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-83284-z

Ingestion of probiotic (Lactobacillus helveticus and Bifidobacterium longum) alters intestinal microbial structure and behavioral expression following social defeat stress
Cited by: 29
Author(s): Katherine A. Partrick, Anna M. Rosenhauer, Jérémie Auger, Amanda R. Arnold, Nicole M Ronczkowski, Lanaya M Jackson, Magen N Lord, Sara Abdulla, Benoît Chassaing, Kim L. Huhman
Software Mentions: 2
Published: over 5 years ago

10.3390/vetsci8060096

Different Non-Structural Carbohydrates/Crude Proteins (NCS/CP) Ratios in Diet Shape the Gastrointestinal Microbiota of Water Buffalo
Cited by: 1
Author(s): Rubina Paradiso, Giorgia Borriello, Sergio Bolletti Censi, Angela Salzano, Roberta Cimmino, Giorgio Galiero, Giovanna Fusco, Esterina De Carlo, Giuseppe Campanile
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.02560

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera
Cited by: 28
Author(s): Maryam Chaib De Mares, Detmer Sipkema, Sixing Huang, Boyke Bunk, Jörg Overmann, Jan Dirk van Elsas
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.681210

The Macleaya cordata Symbiont: Revealing the Effects of Plant Niches and Alkaloids on the Bacterial Community
Cited by: 11
Author(s): Fangmeng Lei, Xueduan Liu, Haonan Huang, Shaodong Fu, Kai Zou, Shuangfei Zhang, Li Zhou, Jianguo Zeng, Hongwei Liu, Luhua Jiang, Bo Miao, Yili Liang
Software Mentions: 2
Published: about 5 years ago

10.3164/jcbn.18-105

Dietary supplementation with partially hydrolyzed guar gum helps improve constipation and gut dysbiosis symptoms and behavioral irritability in children with autism spectrum disorder
Cited by: 42
Author(s): Ryo Inoüe, Yuko Sakaue, Yuki Kawada, Ryuji Tamaki, Zenta Yasukawa, Makoto Ozeki, Satoko Ueba, Chihiro Sawai, Kazuo Nonomura, Takamitsu Tsukahara, Yuji Naito
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0078761

Additive Partitioning of Coral Reef Fish Diversity across Hierarchical Spatial Scales throughout the Caribbean
Cited by: 20
Author(s): Vanessa Francisco, Jesús Ernesto Arias‐González
Software Mentions: 2
Published: almost 13 years ago

10.3390/nu12113408

The Effects of Non-Nutritive Artificial Sweeteners, Aspartame and Sucralose, on the Gut Microbiome in Healthy Adults: Secondary Outcomes of a Randomized Double-Blinded Crossover Clinical Trial
Cited by: 43
Author(s): Samar Y Ahmad, James K. Friel, Dylan MacKay
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-83866-x

Contrasting multitaxon responses to climate change in Mediterranean mountains
Cited by: 23
Author(s): Luca Di Nuzzo, Chiara Vallese, Renato Benesperi, Paolo Giordani, Alessandro Chiarucci, Valter Di Cecco, Luciano Di Martino, Michele Di Musciano, Gabriele Gheza, Chiara Lelli, Daniel Spitale, Juri Nascimbene
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83846-1

High abundance of sugar metabolisers in saliva of children with caries
Cited by: 10
Author(s): Muhammed A.P. Manzoor, Sohvi Lommi, Jussi Furuholm, Catharina Sarkkola, Elina Engberg, Sajan C. Raju, Heli Viljakainen
Software Mentions: 2
Published: over 5 years ago

10.3164/jcbn.19-22

Analysis of gut microbiota in patients with cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL)
Cited by: 7
Author(s): Jun Matsuura, Ryo Inoüe, Tomohisa Takagi, Satoshi Wada, Akiko Watanabe, Takashi Koizumi, Makiko Mukai, Ikuko Mizuta, Yuji Naito, Toshiki Mizuno
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.581387

Preserving Microbial Community Integrity in Oilfield Produced Water
Cited by: 4
Author(s): Natalie M. Rachel, Lisa M. Gieg
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0039634

Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages
Cited by: 86
Author(s): Ben Fitzpatrick, Euan S. Harvey, Andrew Heyward, Emily Twiggs, Jamie Colquhoun
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0123943

Passive Acoustic Monitoring of the Temporal Variability of Odontocete Tonal Sounds from a Long-Term Marine Observatory
Cited by: 18
Author(s): Tzu‐Hao Lin, Hon‐Tsen Yu, Chi‐Fang Chen, Lien‐Siang Chou
Software Mentions: 2
Published: over 11 years ago

10.1002/mnfr.202000455

Fermentation Kinetics of Selected Dietary Fibers by Human Small Intestinal Microbiota Depend on the Type of Fiber and Subject
Cited by: 12
Author(s): Mara P.H. van Trijp, Christiane Rösch, Ran An, Shohreh Keshtkar, Madelon J Logtenberg, Gerben D. A. Hermes, Erwin G. Zoetendal, Henk A. Schols, Guido Hooiveld
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2016.02062

Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection
Cited by: 40
Author(s): Caroline De Tender, Annelies Haegeman, Bart Vandecasteele, Lieven Clement, Pieter Cremelie, Peter Dawyndt, Martine Maes, Jane Debode
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-84783-9

Associations between the gut microbiome and fatigue in cancer patients
Cited by: 19
Author(s): Joud Hajjar, Tito R. Mendoza, Liangliang Zhang, Siqing Fu, Sarina A. Piha-Paul, David S. Hong, Filip Janků, Daniel D. Karp, Alexej Ballhausen, Jing Gong, Abdulrazzak Zarifa, Christine B. Peterson, Funda Meric‐Bernstam, Robert R. Jenq, Aung Naing
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02126

Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota
Cited by: 65
Author(s): Wei Yan, Chang Sun, Jiangxia Zheng, Chaoliang Wen, Congliang Ji, Dexiang Zhang, Yonghua Chen, Zhuocheng Hou, Ning Yang
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0121272

Impacts and Recovery from Severe Tropical Cyclone Yasi on the Great Barrier Reef
Cited by: 61
Author(s): Roger Beeden, Jeffrey Maynard, Marji Puotinen, Paul Marshall, Dryden Jen, Jeremy Goldberg, Gareth J. Williams
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-021-85538-2

Ant social foraging strategies along a Neotropical gradient of urbanization
Cited by: 10
Author(s): Wesley Dáttilo, Ian MacGregor-Fors
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm8020230

The Relationship between Platelet Count and Host Gut Microbiota: A Population-Based Retrospective Cross-Sectional Study
Cited by: 6
Author(s): Hee‐Young Yoon, Hanna Kim, Su Hwan Lee, Soo Jung Kim, Yoosoo Chang, Seungho Ryu, Hocheol Shin, Hyung-Lae Kim, Jin Hwa Lee
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-84965-5

How mountains and elevations shape the spatial distribution of beetles in Peninsular Malaysia
Cited by: 5
Author(s): Muneeb M. Musthafa, Fauziah Abdullah, Ana Paola Martínez-Falcón, Mark de Bruyn
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0115798

Water Content Differences Have Stronger Effects than Plant Functional Groups on Soil Bacteria in a Steppe Ecosystem
Cited by: 10
Author(s): Ximei Zhang, Albert Barberán, Xinghua Zhu, Guangming Zhang, Xingguo Han
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2017.01749

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers
Cited by: 70
Author(s): Chiara Ferrario, Rosario Statello, Luca Carnevali, Leonardo Mancabelli, Christian Milani, Marta Mangifesta, Sabrina Duranti, Gabriele Andrea Lugli, Beatriz Jiménez, Samantha Lodge, Alice Viappiani, Giulia Alessandri, Margerita Dall’Asta, Daniele Del Rio, Andrea Sgoifo, Douwe van Sinderen, Marco Ventura, Francesca Turroni
Software Mentions: 2
Published: almost 9 years ago

10.1038/ismej.2016.139

A family of interaction-adjusted indices of community similarity
Cited by: 36
Author(s): Thomas Sebastian Benedikt Schmidt, João F. Matias Rodrigues, Christian von Mering
Software Mentions: 2
Published: over 9 years ago

10.1186/s13567-020-00769-x

Analysis of the lung microbiota in dogs with Bordetella bronchiseptica infection and correlation with culture and quantitative polymerase chain reaction
Cited by: 6
Author(s): Aline Fastrès, Morgane A. Canonne, Bernard Taminiau, Frédéric Billen, Mutien-Marie Garigliany, Georges Daube, Cécile Clercx
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-06787-8

The Microbial Ecosystem Distinguishes Chronically Diseased Tissue from Adjacent Tissue in the Sigmoid Colon of Chronic, Recurrent Diverticulitis Patients
Cited by: 39
Author(s): Kathleen M. Schieffer, Kate Sabey, Justin Wright, David R. Toole, Rebecca Drucker, Vasily Tokarev, Leonard Harris, Sue Deiling, Melanie A. Eshelman, John P. Hegarty, Gregory S. Yochum, Walter A. Koltun, Regina Lamendella, David B. Stewart
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-09073-9

Correlations of age and growth rate with microbiota composition in Atlantic cod (Gadus morhua) larvae
Cited by: 10
Author(s): Ly T. T. Trinh, Ingrid Bakke, Ôlav Vadstein
Software Mentions: 2
Published: about 9 years ago

10.1002/mnfr.201900403

A Two‐Week Treatment with Plant Extracts Changes Gut Microbiota, Caecum Metabolome, and Markers of Lipid Metabolism in ob/ob Mice
Cited by: 14
Author(s): Amandine Brochot, Vincent Azalbert, Jean‐François Landrier, Franck Tourniaire, Matteo Sérino
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.00167

In situ Linkage of Fungal and Bacterial Proliferation to Microbiologically Influenced Corrosion in B20 Biodiesel Storage Tanks
Cited by: 23
Author(s): Blake W. Stamps, Caitlin L. Bojanowski, Carrie A. Drake, Heather S. Nunn, Pamela F. Lloyd, James G. Floyd, Katelyn A Emmerich, Abby R Neal, Wendy J. Crookes‐Goodson, Bradley S. Stevenson
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0202278

Subgingival microbiome of rheumatoid arthritis patients in relation to their disease status and periodontal health
Cited by: 40
Author(s): Kathrin Beyer, Egija Zaura, Bernd W. Brandt, M.J. Buijs, Johan G. Brun, Wim Crielaard, Anne Isine Bolstad
Software Mentions: 2
Published: almost 8 years ago

10.1080/19490976.2021.1903826

Cohousing-mediated microbiota transfer from milk bioactive components-dosed mice ameliorate colitis by remodeling colonic mucus barrier and lamina propria macrophages
Cited by: 17
Author(s): Cong Liu, Shimeng Huang, Zhenhua Wu, Tiantian Li, Na Li, Bing Zhang, Dandan Han, Shilan Wang, Jiangchao Zhao, Junjun Wang
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.8701

Diversity of fall armyworm, <i>Spodoptera frugiperda</i> and their gut bacterial community in Kenya
Cited by: 33
Author(s): Joseph Gichuhi, Sevgan Subramanian, Fathiya M. Khamis, J. van den Berg, Hannalene du Plessis, Sunday Ekesi, Jeremy K. Herren
Software Mentions: 2
Published: over 6 years ago

10.1080/19490976.2021.1897217

Gut bacteriophage dynamics during fecal microbial transplantation in subjects with metabolic syndrome
Cited by: 17
Author(s): Pilar Manrique, Yifan Zhu, John van der Oost, Hilde Herrema, Max Nieuwdorp, Willem M. de Vos, Mark Young
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.9927

Connectivity of bacterial assemblages along the Loa River in the Atacama Desert, Chile
Cited by: 7
Author(s): Ana Zárate, Cristina Dorador, Rubén Araya, Mariela Guajardo, July Z. Florez, Gonzalo Icaza, Diego Cornejo, Jorge Valdés
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.630841

Preventive Effects of Bacillus licheniformis on Heat Stroke in Rats by Sustaining Intestinal Barrier Function and Modulating Gut Microbiota
Cited by: 13
Author(s): Lei Li, Man Wang, Ji-Kuai Chen, Zhuoran Xu, Shaokang Wang, Xinyu Xia, Dong Liu, Sheng Wang, Chaoyu Xie, Jianghong Wu, Jinfeng Li, Jiqianzhu Zhang, Meitang Wang, Jian Zhu, Changquan Ling, Shuogui Xu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87408-3

Exogenous enzymes and probiotics alter digestion kinetics, volatile fatty acid content and microbial interactions in the gut of Nile tilapia
Cited by: 29
Author(s): Roel M. Maas, Yale Deng, Yueming Dersjant-Li, Jules Petit, M.C.J. Verdegem, J.W. Schrama, Fotini Kokou
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0052448

Growth Attenuation with Developmental Schedule Progression in Embryos and Early Larvae of Sterechinus neumayeri Raised under Elevated CO2
Cited by: 39
Author(s): Pauline C. Yu, Mary A. Sewell, Paul G. Matson, Emily B. Rivest, Lydia Kapsenberg, Gretchen E. Hofmann
Software Mentions: 2
Published: over 13 years ago

10.3389/fmicb.2021.653998

Characterization and Comparison of Bacterial Communities of an Invasive and Two Native Caribbean Seagrass Species Sheds Light on the Possible Influence of the Microbiome on Invasive Mechanisms
Cited by: 7
Author(s): Tânia Aires, Tamara M. Stuij, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.01249-20

Insights into the Cultured Bacterial Fraction of Corals
Cited by: 40
Author(s): Michael Sweet, Helena Villela, Tina Keller‐Costa, Rodrigo Costa, Stefano Romano, David G. Bourne, Anny Cárdenas, Megan J. Huggett, Allison H. Kerwin, Felicity Kuek, Mónica Medina, Julie Meyer, Moritz Müller, F. Joseph Pollock, Michael S. Rappé, Mathieu G. Séré, Koty Sharp, Christian R. Voolstra, Nathan J Zaccardi, Maren Ziegler, Raquel S. Peixoto
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0077527

Availability of Ectomycorrhizal Fungi to Black Spruce above the Present Treeline in Eastern Labrador
Cited by: 19
Author(s): Laura Reithmeier, Gavin Kernaghan
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-021-88495-y

Streptomyces strains modulate dynamics of soil bacterial communities and their efficacy in disease suppression caused by Phytophthora capsici
Cited by: 18
Author(s): Sakineh Abbasi, Aymé Spor, Akram Sadeghi, Naser Safaie
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88658-x

Uncovering the hidden bacterial ghost communities of yeast and experimental evidences demonstrates yeast as thriving hub for bacteria
Cited by: 3
Author(s): B. Indu, Tallapragada Keertana, Ipsita Sahu, Uppada Jagadeeshwari, Ch. Sasikala, Chintalapati Venkata Ramana
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88252-1

The airborne mycobiome and associations with mycotoxins and inflammatory markers in the Norwegian grain industry
Cited by: 4
Author(s): Anne Straumfors, Sunil Mundra, Oda A H Foss, Steen Mollerup, Hävard Kauserud
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-09842-6

Characterization of cervico-vaginal microbiota in women developing persistent high-risk Human Papillomavirus infection
Cited by: 154
Author(s): Monica Di Paola, Cristina Sani, Ann Maria Clemente, Anna Iossa, Eloisa Perissi, Giuseppe Castronovo, Michele Tanturli, Damaríz Rivero, Federico Cozzolino, Duccio Cavalieri, Francesca Carozzi, Carlotta De Filippo, Maria Gabriella Torcia
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.4898

Do latitudinal gradients exist in New Zealand stream invertebrate metacommunities?
Cited by: 8
Author(s): Jonathan D. Tonkin, Russell G. Death, Timo Muotka, Anna Astorga, David A. Lytle
Software Mentions: 2
Published: over 8 years ago

10.1080/19490976.2021.1926840

The gut microbiome of COVID-19 recovered patients returns to uninfected status in a minority-dominated United States cohort
Cited by: 38
Author(s): Rachel C. Newsome, Josée Gauthier, María Celeste Hernández, George Abraham, Tanya O. Robinson, Hibbard E. Williams, Meredith Sloan, Anna H. Owings, Hannah Laird, Christian Taube, Yilianys Pride, Kenneth J. Wilson, Mohammad S Hasan, Adam Parker, Michal Senitko, Sarah C. Glover, Raad Z. Gharaibeh, Christian Jobin
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7040

Composition and dynamics of the bacterial communities present in the post-slaughter environment of farmed Atlantic salmon (<i>Salmo salar</i>L<i>.</i>) and correlations to gelatin degrading activity
Cited by: 2
Author(s): Ása Jacobsen, Svein‐Ole Mikalsen, Hóraldur Joensen, Jonhard Eysturskarð
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-89308-y

Decrease of α-defensin impairs intestinal metabolite homeostasis via dysbiosis in mouse chronic social defeat stress model
Cited by: 21
Author(s): Kosuke Suzuki, Kiminori Nakamura, Yu Shimizu, Yoshiaki Yokoi, Shuya Ohira, Mizu Hagiwara, Yi Wang, Yuchi Song, Tomoyasu Aizawa, Tokiyoshi Ayabe
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.2538

Deer herbivory reduces web-building spider abundance by simplifying forest vegetation structure
Cited by: 17
Author(s): Elizabeth J Roberson, Michael J. Chips, Walter P. Carson, Thomas P. Rooney
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2021.671813

Profiling of Oral Microbiota and Cytokines in COVID-19 Patients
Cited by: 47
Author(s): Valerio Iebba, Nunzia Zanotta, Giuseppina Campisciano, Verena Zerbato, Stefano Di Bella, Carolina Cason, Roberto Luzzati, Marco Confalonieri, Anna Teresa Palamara, Manola Comar
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11576

Dumpster diving for diatom plastid 16S rRNA genes
Cited by: 2
Author(s): Krista L Bonfantine, Stacey M. Trevathan‐Tackett, Ty G. Matthews, Ana Neckovic, Han Ming Gan
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.592060

Microbiota and Metabolite Profiling Combined With Integrative Analysis for Differentiating Cheeses of Varying Ripening Ages
Cited by: 13
Author(s): Roya Afshari, Christopher J. Pillidge, Daniel A. Dias, A. Mark Osborn, Harsharn Gill
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0233878

Different wheat cultivars exhibit variable responses to inoculation with arbuscular mycorrhizal fungi from organic and conventional farms
Cited by: 27
Author(s): David García de León, Tanel Vahter, Martin Zobel, Mati Koppel, Liina Edesi, John Davison, Saleh Al‐Quraishy, Wael N. Hozzein, Mari Moora, Jane Oja, Martti Vasar, Maarja Öpik
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-89822-z

Longitudinal profiling of the burn patient cutaneous and gastrointestinal microbiota: a pilot study
Cited by: 6
Author(s): Kelly M. Lima, Ryan R. Davis, Stephenie Y. Liu, David G. Greenhalgh, Nam K. Tran
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-11423-6

Assessing the potential for raw meat to influence human colonization with Staphylococcus aureus
Cited by: 14
Author(s): Margaret Carrel, Zhao Chang, Dipendra Thapaliya, Patrick Bitterman, Ashley E. Kates, Blake Hanson, Tara C. Smith
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13567-019-0701-8

Influence of pig gut microbiota on Mycoplasma hyopneumoniae susceptibility
Cited by: 12
Author(s): Meera Surendran Nair, Tyson P. Eucker, Brian Martinson, Axel Neubauer, Joseph Victoria, Bryon A. Nicholson, Maria Pieters
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.1434

Dynamics in benthic community composition and influencing factors in an upwelling-exposed coral reef on the Pacific coast of Costa Rica
Cited by: 11
Author(s): Ines Stuhldreier, Celeste Sánchez-Noguera, Florian Roth, Carlos Jiménez, Tim Rixen, Jorge Cortés, Christian Wild
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41396-018-0334-3

Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil
Cited by: 34
Author(s): David J. Levy‐Booth, Ian Giesbrecht, Colleen T. E. Kellogg, Thierry J. Heger, D. V. D’Amore, Patrick J. Keeling, Steven J. Hallam, William W. Mohn
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-90024-w

The gut microbiome in pancreatogenic diabetes differs from that of Type 1 and Type 2 diabetes
Cited by: 8
Author(s): Rupjyoti Talukdar, Priyanka Sarkar, Aparna Jakkampudi, Subhaleena Sarkar, Mohsin Aslam, Manasa Jandhyala, G. Deepika, Misbah Unnisa, D. Nageshwar Reddy
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-90553-4

Identification of mucin degraders of the human gut microbiota
Cited by: 48
Author(s): Stefano Raimondi, Eliana Musmeci, Francesco Candeliere, Alberto Amaretti, Maddalena Rossi
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02625

Land Management and Microbial Seed Load Effect on Rhizosphere and Endosphere Bacterial Community Assembly in Wheat
Cited by: 17
Author(s): Vanessa Nessner Kavamura, Rebekah J. Robinson, Rifat Hayat, Ian M. Clark, David Hughes, Maike Rossmann, P. R. Hirsch, Rodrigo Mendes, Tim H. Mauchline
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-11678-z

Impacts of aquaculture wastewater irrigation on soil microbial functional diversity and community structure in arid regions
Cited by: 26
Author(s): Lijuan Chen, Qi Feng, Changsheng Li, Yongping Wei, Yan Zhao, Yongjiu Feng, Hang Zheng, Fengrui Li, Huiya Li
Software Mentions: 2
Published: almost 9 years ago

10.1080/19490976.2021.1953247

Distinct gut microbial compositional and functional changes associated with impaired inhibitory control in patients with cirrhosis
Cited by: 11
Author(s): Jasmohan S. Bajaj, Amirhossein Shamsaddini, Andrew Fagan, Sara McGeorge, Edith Gavis, Masoumeh Sikaroodi, Lisa A. Brenner, James B. Wade, Patrick M. Gillevet
Software Mentions: 2
Published: over 5 years ago

10.1080/19490976.2021.1957536

A double-blind, 377-subject randomized study identifies <i>Ruminococcus, Coprococcus, Christensenella</i>, and <i>Collinsella</i> as long-term potential key players in the modulation of the gut microbiome of lactose intolerant individuals by galacto-oligosaccharides
Cited by: 11
Author(s): M. Andrea Azcárate-Peril, Jeffrey Roach, Alan J. Marsh, William D. Chey, William J. Sandborn, Andrew J. Ritter, Dennis Savaiano, Todd R. Klaenhammer
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-91182-7

Soil degradation influences soil bacterial and fungal community diversity in overgrazed alpine meadows of the Qinghai-Tibet Plateau
Cited by: 20
Author(s): Lin Dong, Jingjing Li, Juan Sun, Chao Yang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89903-z

Integrating multiple chemical tracers to elucidate the diet and habitat of Cookiecutter Sharks
Cited by: 7
Author(s): Aaron B. Carlisle, Elizabeth Andruszkiewicz Allan, Sora L. Kim, Lauren Meyer, Jesse A. Port, Stephen R. Scherrer, John B. O’Sullivan
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.4060

Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape
Cited by: 5
Author(s): Derek D. Houston, Shahan Azeem, Coady W. Lundy, Yuko Sato, Baoqing Guo, Julie A. Blanchong, Phillip C. Gauger, David R. Marks, Kyoung‐Jin Yoon, James S. Adelman
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-90888-y

Bacteroides uniformis CECT 7771 alleviates inflammation within the gut-adipose tissue axis involving TLR5 signaling in obese mice
Cited by: 27
Author(s): Emanuel Fabersani, Kevin J. Portune, Isabel Campillo, Inmaculada López-Almela, Sergio Montserrat‐de la Paz, Marina Romaní-Pérez, Alfonso Benı́tez-Páez, Yolanda Sanz
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-90204-8

Nitrogen fixation and denitrification activity differ between coral- and algae-dominated Red Sea reefs
Cited by: 10
Author(s): Yusuf C. El-Khaled, Florian Roth, Nils Rädecker, Arjen Tilstra, Denis B. Karcher, Benjamin Kürten, Burton H. Jones, Christian R. Voolstra, Christian Wild
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.10080

Spatial benthic community analysis of shallow coral reefs to support coastal management in Culebra Island, Puerto Rico
Cited by: 3
Author(s): Nicolás X. Gómez-Andújar, Edwin A. Hernández-Delgado
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-91387-w

Choice of 16S ribosomal RNA primers affects the microbiome analysis in chicken ceca
Cited by: 20
Author(s): Nadia Darwish, Jonathan Shao, Lori L. Schreier, Monika Proszkowiec‐Weglarz
Software Mentions: 2
Published: about 5 years ago