cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.595427

Diversity and Geographic Distribution of Ligninolytic Fungi Associated With Castanopsis sieboldii Leaf Litter in Japan
Cited by: 6
Author(s): Takashi Osono, Shiro Matsuoka, Dai Hirose
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2020.578669

Environmental Factors Driving Spatial Heterogeneity in Desert Halophile Microbial Communities
Cited by: 9
Author(s): Gherman Uritskiy, Adam Munn, Micah Dailey, Diego Rivera Gelsinger, Samantha Getsin, Alfonso F. Dávila, Peter McCullough, James Taylor, Jocelyne DiRuggiero
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0192391

The effect of bio-irrigation by the polychaete Lanice conchilega on active denitrifiers: Distribution, diversity and composition of nosZ gene
Cited by: 11
Author(s): Maryam Yazdani Foshtomi, Frédérik Leliaert, Sofie Derycke, Anne Willems, Magda Vincx, Jan Vanaverbeke
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.02887

Assessment of Microbial Community Dynamics in River Bank Filtrate Using High-Throughput Sequencing and Flow Cytometry
Cited by: 24
Author(s): Christina Jil Fiedler, Christoph Schönher, Philipp Proksch, David Kerschbaumer, Ernest Mayr, Marija Žunabović-Pichler, Konrad J. Domig, Reinhard Perfler
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2017.01028

Ecological Succession Pattern of Fungal Community in Soil along a Retreating Glacier
Cited by: 33
Author(s): Jianqing Tian, Yuchen Qiao, Ben‐Lai Wu, Huai Chen, Wei Li, Na Jiang, Xiaoling Zhang, Xingzhong Liu
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms8091291

Mining the Microbiome of Key Species from African Savanna Woodlands: Potential for Soil Health Improvement and Plant Growth Promotion
Cited by: 11
Author(s): Ivete Maquia, Paula Fareleira, Isabel Videira e Castro, Denise R. A. Brito, Ricardo Soares, Aniceto Chaúque, M.M. Ferreira-Pinto, Erica Lumini, Andrea Berruti, Natasha Ribeiro, Isabel Marques, Ana I. Ribeiro‐Barros
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2016.01278

Spatio-Temporal Variation of Core and Satellite Arbuscular Mycorrhizal Fungus Communities in Miscanthus giganteus
Cited by: 19
Author(s): Christopher J. Barnes, Caitlin A. Burns, Christopher J. van der Gast, Niall P. McNamara, Gary D. Bending
Software Mentions: 2
Published: over 8 years ago

10.3390/ijerph18168254

Soy and Frequent Dairy Consumption with Subsequent Equol Production Reveals Decreased Gut Health in a Cohort of Healthy Puerto Rican Women
Cited by: 3
Author(s): Mercedes Lacourt-Ventura, Brayan Vilanova-Cuevas, Delmarie Rivera-Rodríguez, Raysa Rosario-Acevedo, Christine Miranda, Gerónimo Maldonado-Martínez, Johanna Maysonet, Darlene Vargas, Yelitza Ruiz, Robert Hunter-Mellado, Luis A. Cubano, Suranganie Dharmawardhane, Johanna W. Lampe, Abel Baerga‐Ortiz, Filipa Godoy-Vitorino, Michelle M. Martínez-Montemayor
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0211271

Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
Cited by: 19
Author(s): Pablo de Jesús Suárez-Moo, Andrew P. Vovides, M. Patrick Griffith, Francisco Barona‐Gómez, Angélica Cibrián-Jaramillo
Software Mentions: 2
Published: almost 6 years ago

10.1002/mbo3.1114

Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study
Cited by: 6
Author(s): Jannigje G. Kers, J. E. de Oliveira, E.A.J. Fischer, Monique H.G. Tersteeg-Zijderveld, Prokopis Konstanti, Jan Arend Stegeman, Hauke Smidt, Francisca C. Velkers
Software Mentions: 2
Published: about 4 years ago

10.3390/ijerph17249157

The Response of Arbuscular Mycorrhizal Fungal Communities to the Soil Environment of Underground Mining Subsidence Area in Northwest China
Cited by: 3
Author(s): Hai Huang, Jing Guo, Yuxiu Zhang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2021.726384

Influence of Climate on Soil and Wine Bacterial Diversity on a Vineyard in a Non-traditional Wine Region in Argentina
Cited by: 4
Author(s): Gabriel Alejandro Rivas, Andrea Cecilia Guillade, Liliana Semorile, Lucrecia Delfederico
Software Mentions: 2
Published: over 3 years ago

10.1098/rsos.181800

Stable isotopes reveal winter feeding in different habitats in blue, fin and sei whales migrating through the Azores
Cited by: 24
Author(s): Mónica Silva, Asunción Borrell, Rui Prieto, Pauline Gauffier, Martine Bérubé, Per J. Palsbøl, Ana Colaço
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: about 4 years ago

10.3390/ijerph16214160

Indoor Microbiome and Antibiotic Resistance on Floor Surfaces: An Exploratory Study in Three Different Building Types
Cited by: 15
Author(s): Mridula Gupta, Seungjun Lee, Michael Bisesi, Jiyoung Lee
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-05485-9

Costly neighbours: Heterospecific competitive interactions increase metabolic rates in dominant species
Cited by: 13
Author(s): Matouš Janča, Lumı́r Gvoždı́k
Software Mentions: 2
Published: over 7 years ago

10.1186/s13073-014-0099-x

The conjunctival microbiome in health and trachomatous disease: a case control study
Cited by: 132
Author(s): Yanjiao Zhou, Martin J. Holland, Pateh Makalo, Hassan Joof, Chrissy h. Roberts, David Mabey, Robin L. Bailey, Matthew J. Burton, George M. Weinstock, Sarah E. Burr
Software Mentions: 2
Published: about 10 years ago

10.3390/microorganisms9061237

Reversion of Gut Microbiota during the Recovery Phase in Patients with Asymptomatic or Mild COVID-19: Longitudinal Study
Cited by: 16
Author(s): Han Na Kim, Eun Jeong Joo, Chil Woo Lee, Kwang Sung Ahn, Hyung Lae Kim, Dong Il Park, Soo Kyung Park
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms8091331

Root-Associated Mycobiome Differentiate between Habitats Supporting Production of Different Truffle Species in Serbian Riparian Forests
Cited by: 5
Author(s): Žaklina Marjanović, Ali Nawaz, Katarina Stevanović, Elmira Saljnikov, Irena Maček, Fritz Oehl, Tesfaye Wubet
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.02708

Roots and Panicles of the C4 Model Grasses Setaria viridis (L). and S. pumila Host Distinct Bacterial Assemblages With Core Taxa Conserved Across Host Genotypes and Sampling Sites
Cited by: 11
Author(s): Carolina Escobar Rodríguez, Birgit Mitter, Livio Antonielli, Friederike Trognitz, Stéphane Compant, Angela Sessitsch
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms8121922

Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica
Cited by: 18
Author(s): Claudia Leoni, Elisabetta Piancone, N. Sasanelli, Giovanni Bruno, Caterina Manzari, Graziano Pesole, Luigi R. Ceci, Mariateresa Volpicella
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13073-016-0301-4

Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection
Cited by: 125
Author(s): Emmanuel Montassier, Gabriel A. Al‐Ghalith, Tonya Ward, Stéphane Corvec, Thomas Gastinne, G. Potel, Philippe Moreau, Éric Batard, Dan Knights
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2016.00775

Ecotoxicological Impact of the Bioherbicide Leptospermone on the Microbial Community of Two Arable Soils
Cited by: 26
Author(s): Sana Romdhane, Marion Devers‐Lamrani, Lise Barthelmebs, Christophe Calvayrac, Cédric Bertrand, Jean‐François Cooper, Franck E. Dayan, Fabrice Martin-Laurent
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-06687-x

Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach
Cited by: 43
Author(s): Vera G. Fonseca, Frédéric Sinniger, John Gaspar, Christopher Quince, Simon Creer, Deborah M. Power, Lloyd S. Peck
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-019-0375-2

Metabolic regulation of the maize rhizobiome by benzoxazinoids
Cited by: 186
Author(s): T. E. Anne Cotton, Pierre Pétriacq, Duncan D. Cameron, Moaed Al Meselmani, Roland E. Schwarzenbacher, Stephen A. Rolfe, Jurriaan Ton
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms8081160

Effects of Thymol Supplementation on Goat Rumen Fermentation and Rumen Microbiota In Vitro
Cited by: 11
Author(s): Jiangkun Yu, Liyuan Cai, Jiacai Zhang, Ao Yang, Yanan Wang, Lei Zhang, Le Luo Guan, Desheng Qi
Software Mentions: 2
Published: over 4 years ago

10.1186/s13073-016-0312-1

Roux-en-Y gastric bypass surgery of morbidly obese patients induces swift and persistent changes of the individual gut microbiota
Cited by: 238
Author(s): Albert Pallejà, Alireza Kashani, Kristine H. Allin, Trine Nielsen, Chenchen Zhang, Yin Li, Thorsten Brach, Suisha Liang, Feng Qian, Nils B. Jørgensen, Kirstine N. Bojsen‐Møller, Carsten Dirksen, Kristoffer Sølvsten Burgdorf, Jens J. Holst, Sten Madsbad, J. Wang, Oluf Pedersen, Torben Hansen, Manimozhiyan Arumugam
Software Mentions: 2
Published: over 8 years ago

10.1186/s13073-016-0330-z

The early infant gut microbiome varies in association with a maternal high-fat diet
Cited by: 256
Author(s): Derrick M. Chu, Kathleen M. Antony, Jun Ma, Amanda Prince, Lori Showalter, Michelle Moller, Kjersti M. Aagaard
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-07425-z

High diversity and unique composition of gut microbiomes in pygmy (Kogia breviceps) and dwarf (K. sima) sperm whales
Cited by: 28
Author(s): Patrick M. Erwin, Ryan G. Rhodes, Kevin B. Kiser, Tiffany F. Keenan-Bateman, William A. McLellan, D. Ann Pabst
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.02698

Feed Restriction Modulates the Fecal Microbiota Composition, Nutrient Retention, and Feed Efficiency in Chickens Divergent in Residual Feed Intake
Cited by: 19
Author(s): Sina-Catherine Siegerstetter, Renée M. Petri, Elizabeth Magowan, Peadar G. Lawlor, Qendrim Zebeli, Niamh O’Connell, Barbara U. Metzler‐Zebeli
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0165035

Nestedness in Arbuscular Mycorrhizal Fungal Communities along Soil pH Gradients in Early Primary Succession: Acid-Tolerant Fungi Are pH Generalists
Cited by: 20
Author(s): Ai Kawahara, Gi-Hong An, Sachie Miyakawa, Jun Sonoda, Tatsuhiro Ezawa
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0247111

Decadal (2006-2018) dynamics of Southwestern Atlantic’s largest turbid zone reefs
Cited by: 12
Author(s): Carolina D. Teixeira, Pamela M. Chiroque-Solano, Felipe Vitório Ribeiro, Lélis Antonio Carlos-Júnior, Leonardo Mitrano Neves, Paulo S. Salomon, Leonardo T. Salgado, Ludmilla N. Falsarella, Gabriel O. Cardoso, Lívia Bonetti Villela, Matheus Oliveira Freitas, Fernando C. Moraes, Alex Cardoso Bastos, Rodrigo L. Moura
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.00538

The Eukaryotic Life on Microplastics in Brackish Ecosystems
Cited by: 95
Author(s): Marie Therese Kettner, Sonja Oberbeckmann, Matthias Labrenz, Hans‐Peter Grossart
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0177374

Drivers of abundance and spatial distribution of reef-associated sharks in an isolated atoll reef system
Cited by: 21
Author(s): David Tickler, Tom B. Letessier, Heather J. Koldewey, Jessica J. Meeuwig
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0223067

Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries
Cited by: 13
Author(s): Theresa K. Hattenrath-Lehmann, Jennifer G. Jankowiak, Florian Koch, Christopher J. Gobler
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00375-19

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis
Cited by: 23
Author(s): Alexey V. Melnik, Yoshiki Vázquez-Baeza, Alexander A. Aksenov, Embriette R. Hyde, Andrew C. McAvoy, Mingxun Wang, Ricardo R. da Silva, Ivan Protsyuk, Jason V. Wu, Amina Bouslimani, Yan Wei Lim, Tal Luzzatto-Knaan, William Comstock, Robert A. Quinn, Richard L. Wong, Greg Humphrey, Gail Ackermann, Timothy Spivey, Sharon S. Brouha, Nuno Bandeira, Grace Lin, Forest Rohwer, Douglas Conrad, Theodore Alexandrov, Rob Knight, Pieter C. Dorrestein, Neha Garg
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.635881

Organic Waste Substrates Induce Important Shifts in Gut Microbiota of Black Soldier Fly (Hermetia illucens L.): Coexistence of Conserved, Variable, and Potential Pathogenic Microbes
Cited by: 42
Author(s): Chrysantus M. Tanga, Jacqueline Wahura Waweru, Yosef Hamba Tola, Abel Anyega Onyoni, Fathiya M. Khamis, Sunday Ekesi, Juan C. Paredes
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0090785

Humpback Whale Populations Share a Core Skin Bacterial Community: Towards a Health Index for Marine Mammals?
Cited by: 102
Author(s): Amy Apprill, Jooke Robbins, A. Murat Eren, Adam A. Pack, Julie Réveillaud, David K. Mattila, Michael J. Moore, Misty Niemeyer, Kathleen Moore, Tracy J. Mincer
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0224641

Effects of initial microbial biomass abundance on respiration during pine litter decomposition
Cited by: 7
Author(s): Michaeline B. N. Albright, Andreas Runde, Deanna Lopez, Jason Gans, Sanna Sevanto, Dominic Woolf, John Dunbar
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0241732

Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types
Cited by: 7
Author(s): Michael Edward C Abundo, John M. Ngunjiri, Kara Taylor, Hana Ji, Amir Ghorbani, Mahesh Kc, Bonnie Weber, Timothy J. Johnson, Chang-Won Lee
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41396-018-0313-8

Linking bacterial community composition to soil salinity along environmental gradients
Cited by: 236
Author(s): Kristin Rath, Noah Fierer, Daniel V. Murphy, Johannes Rousk
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00775-21

Comprehensive Strain-Level Analysis of the Gut Microbe Faecalibacterium prausnitzii in Patients with Liver Cirrhosis
Cited by: 3
Author(s): Yaowen Chen, Pu Liao, Runyan Liu, Shuofeng Hu, Zhen He, Guohua Dong, Chao Feng, Sijing An, Xiaomin Ying
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-79102-7

Selenization of S. cerevisiae increases its protective potential in experimental autoimmune encephalomyelitis by triggering an intestinal immunomodulatory loop
Cited by: 4
Author(s): Thais Fernanda de Campos Fraga-Silva, Luiza Ayumi Nishiyama Mimura, Larissa Ragozo Cardoso de Oliveira, Juliana Helena dos Santos de Toledo, Patrícia Aparecida Borim, Sofia Fernanda Gonçalves Zorzella-Pezavento, Diego Peres Alonso, Paulo Eduardo Martins Ribolla, Carlos Alberto Ferreira de Oliveira, Denise Morais da Fonseca, Eduardo J. Villablanca, Alexandrina Sartori
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0207940

Seasonal changes in diet and chemical defense in the Climbing Mantella frog (Mantella laevigata)
Cited by: 16
Author(s): Nora A. Moskowitz, Alexandre B. Roland, Eva K. Fischer, Ndimbintsoa Ranaivorazo, Charles Vidoudez, Marianne T. Aguilar, Sophia Caldera, Jacqueline Chea, Miruna G. Cristus, Jett Crowdis, Bluyé DeMessie, Caroline R. DesJardins-Park, Audrey H. Effenberger, Felipe N. Flores, M. A. Giles, Emma Y. He, Nike S. Izmaylov, ChangWon C. Lee, Nicholas A. Pagel, Krystal K Phu, Leah U. Rosen, Danielle A. Seda, Yong Shen, Santiago Vargas, Andrew W. Murray, Eden Abebe, Sunia A. Trauger, David A. Donoso, Miguel Vences, Lauren A. O’Connell
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0159402

Reappraisal of the Trophic Ecology of One of the World’s Most Threatened Spheniscids, the African Penguin
Cited by: 17
Author(s): Maëlle Connan, G. J. G. Hofmeyr, Pierre A. Pistorius
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0102130

Characterization of the Bacterial Communities of Life Stages of Free Living Lone Star Ticks (Amblyomma americanum)
Cited by: 77
Author(s): Amanda Jo Williams-Newkirk, Lori A. Rowe, Tonya Mixson‐Hayden, Gregory A. Dasch
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0162470

Decrease of Population Divergence in Eurasian Perch (Perca fluviatilis) in Browning Waters: Role of Fatty Acids and Foraging Efficiency
Cited by: 12
Author(s): Kristin Scharnweber, Ursula Strandberg, Konrad Karlsson, Peter Eklöv
Software Mentions: 2
Published: about 8 years ago

10.1186/s13073-021-00921-y

Dietary fiber intake, the gut microbiome, and chronic systemic inflammation in a cohort of adult men
Cited by: 47
Author(s): Wenjie Ma, Long H. Nguyen, Mingyang Song, Dong D. Wang, Eric A. Franzosa, Yin Cao, Amit D. Joshi, David A. Drew, Raaj S. Mehta, Kerry L. Ivey, Lisa L. Strate, Edward Giovannucci, Jacques Izard, Wendy S. Garrett, Eric B. Rimm, Curtis Huttenhower, Andrew T. Chan
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0143838

Comparative Allometric Growth of the Mimetic Ephippid Reef Fishes Chaetodipterus faber and Platax orbicularis
Cited by: 5
Author(s): Breno Barros, Yoichi Sakai, Pedro Henrique Cipresso Pereira, Eric Gasset, Vincent Buchet, Moana Maamaatuaiahutapu, Jonathan Stuart Ready, Yrlan Oliveira, Tommaso Giarrizzo, Marcelo Vallinoto
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-79647-7

Stoichiometric niche, nutrient partitioning and resource allocation in a solitary bee are sex-specific and phosphorous is allocated mainly to the cocoon
Cited by: 21
Author(s): Michał Filipiak, Michał Woyciechowski, Marcin Czarnołęski
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13073-021-00957-0

Gut microbial determinants of clinically important improvement in patients with rheumatoid arthritis
Cited by: 36
Author(s): Vinod Kumar Gupta, Kevin Y. Cunningham, Benjamin Hur, Utpal Bakshi, Harvey Huang, Kenneth J. Warrington, Veena Taneja, Elena Myasoedova, John M. Davis, Jaeyun Sung
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0080365

Augmentative Biocontrol in Natural Marine Habitats: Persistence, Spread and Non-Target Effects of the Sea Urchin Evechinus chloroticus
Cited by: 20
Author(s): Javier Atalah, Grant A. Hopkins, Barrie M. Forrest
Software Mentions: 2
Published: about 11 years ago

10.3389/fmicb.2015.00230

Spatial variability of microbial assemblages associated with a dominant habitat-forming seaweed
Cited by: 59
Author(s): Alexandra H. Campbell, Ezequiel M. Marzinelli, Jonathan Gelber, Peter D. Steinberg
Software Mentions: 2
Published: over 9 years ago

10.1186/s12932-015-0022-4

Rare earth element geochemistry of outcrop and core samples from the Marcellus Shale
Cited by: 22
Author(s): Clinton W. Noack, Jinesh C. Jain, John Stegmeier, J. Alexandra Hakala, Athanasios K. Karamalidis
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pntd.0007672

Opportunistic pathogens and large microbial diversity detected in source-to-distribution drinking water of three remote communities in Northern Australia
Cited by: 10
Author(s): Mirjam Kaestli, Michelle O’Donnell, Alea Rose, Jessica R. Webb, Mark Mayo, Bart J. Currie, Karen S. Gibb
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00542-20

Phages versus Antibiotics To Treat Infected Diabetic Wounds in a Mouse Model: a Microbiological and Microbiotic Evaluation
Cited by: 12
Author(s): Jean‐François Huon, Emmanuel Montassier, Anne-Gaëlle Leroy, Matthieu Grégoire, Marie-Anne Vibet, Jocelyne Caillon, David Boutoille, Dominique Navas
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-80859-0

Differences in the bacteriome of swab, saliva, and tissue biopsies in oral cancer
Cited by: 25
Author(s): Divya Gopinath, Rohit Kunnath Menon, Chun Wie Chong, Moinak Banerjee, Swagatika Panda, Deviprasad Mandal, Paresh Kumar Behera, Susanta Roychoudhury, Supriya Kheur, MG Botelho, Newell W. Johnson
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0163407

A Citizen Science Approach: A Detailed Ecological Assessment of Subtropical Reefs at Point Lookout, Australia
Cited by: 27
Author(s): Christiaan M Roelfsema, Ruth H. Thurstan, Maria Beger, Christine L. Dudgeon, Jennifer Loder, Éva Kovács, Michele Gallo, Jason Flower, K-Le Gomez Cabrera, Juan Carlos Ortíz, A M Lea, Diana Kleine
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pntd.0007697

Systems analysis-based assessment of post-treatment adverse events in lymphatic filariasis
Cited by: 11
Author(s): Britt Andersen, Bruce A. Rosa, Jonah Kupritz, Aboulaye Meïté, Traye Serge, Marla I. Hertz, Kurt C. Curtis, Christopher L. King, Makedonka Mitreva, Peter Fischer, Gary J. Weil
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-80278-1

Neonatal intensive care unit (NICU) exposures exert a sustained influence on the progression of gut microbiota and metabolome in the first year of life
Cited by: 9
Author(s): Polly Soo Xi Yap, Chun Wie Chong, Azanna Ahmad Kamar, Ivan Kok Seng Yap, Yao Mun Choo, Nai Ming Lai, Cindy Shuan Ju Teh
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-81105-x

The relationships between microbiota and the amino acids and organic acids in commercial vegetable pickle fermented in rice-bran beds
Cited by: 8
Author(s): Kazunori Sawada, Hitoshi Koyano, Nozomi Yamamoto, Takuji Yamada
Software Mentions: 2
Published: almost 4 years ago

10.3390/microorganisms9040842

Diversity of Aerobic Anoxygenic Phototrophs and Rhodopsin-Containing Bacteria in the Surface Microlayer, Water Column and Epilithic Biofilms of Lake Baikal
Cited by: 7
Author(s): A. D. Galachyants, Andrey Krasnopeev, G. V. Podlesnaya, Sergey Potapov, E. V. Sukhanova, И. В. Тихонова, E. Zimens, Мarsel R. Kabilov, Н.А. Жученко, Anna Gorshkova, M. Yu. Suslova, О. И. Белых
Software Mentions: 2
Published: over 3 years ago

10.1093/gigascience/gix036

Lipidomic profiling reveals distinct differences in plasma lipid composition in healthy, prediabetic, and type 2 diabetic individuals
Cited by: 34
Author(s): Zhong Huang, Chao Fang, Yanqun Fan, Yan Liu, Bo Wen, Huahui Ren, Guixue Hou, Fangming Yang, Hailiang Xie, Zhuye Jie, Ye Peng, Zhiqiang Ye, Jiegen Wu, Jian Zi, Guoqing Zhao, Jiayu Chen, Xiao Bao, Yihe Hu, Yan Gao, Jun Zhang, Huanming Yang, Jian Wang, Lise Madsen, Karsten Kristiansen, Chuanming Ni, Junhua Li, Siqi Liu
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pntd.0006739

Bacterial community composition in the salivary glands of triatomines (Hemiptera: Reduviidae)
Cited by: 15
Author(s): Michele S. Lima, Marinella Silva Laport, Elias Seixas Lorosa, José Jurberg, Kátia Regina Netto dos Santos, Mário Alberto Cardoso da Silva Neto, Caio Tavora Coelho da Costa Rachid, Geórgia C. Atella
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pgen.1007943

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events
Cited by: 92
Author(s): Tina E. Berry, Benjamin J. Saunders, Megan L. Coghlan, Michael Stat, Simon Jarman, Anthony J. Richardson, Claire Davies, Oliver Berry, Euan S. Harvey, Michael Bunce
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1006102

Correcting for batch effects in case-control microbiome studies
Cited by: 99
Author(s): Sean M. Gibbons, Claire Duvallet, Eric J. Alm
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00537

Fungal Community Structural and Microbial Functional Pattern Changes After Soil Amendments by Oilseed Meals of Jatropha curcas and Camelina sativa: A Microcosm Study
Cited by: 10
Author(s): Ping Hu, Liangjun Wu, Emily B. Hollister, Autumn S. Wang, Anilkumar C. Somenahally, Frank M. Hons, Terry J. Gentry
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-82348-4

A synthetic kinematic index of trunk displacement conveying the overall motor condition in Parkinson’s disease
Cited by: 6
Author(s): Emahnuel Troisi Lopez, Roberta Minino, Pierpaolo Sorrentino, Rosaria Rucco, Anna Carotenuto, Valeria Agosti, Domenico Tafuri, Valentino Manzo, Marianna Liparoti, Giuseppe Sorrentino
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-82538-0

Alterations in the gut bacterial microbiome in people with type 2 diabetes mellitus and diabetic retinopathy
Cited by: 83
Author(s): Taraprasad Das, Rajagopalaboopathi Jayasudha, SamaKalyana Chakravarthy, Gumpili Sai Prashanthi, Archana Bhargava, Mudit Tyagi, Padmaja Kumari Rani, Rajeev Reddy Pappuru, Savitri Sharma, Sisinthy Shivaji
Software Mentions: 2
Published: almost 4 years ago

10.1128/mSystems.00902-21

SubTap, a Versatile 3D Printed Platform for Eavesdropping on Extracellular Interactions
Cited by: 1
Author(s): Caroline Birer-Williams, Rosalie K. Chu, Christopher R. Anderton, Erik S. Wright
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.680073

Lactobacillus casei CCFM1074 Alleviates Collagen-Induced Arthritis in Rats via Balancing Treg/Th17 and Modulating the Metabolites and Gut Microbiota
Cited by: 30
Author(s): Zhexin Fan, R. Paul Ross, Catherine Stanton, Bao Hou, Jianxin Zhao, Hao Zhang, Bo Yang
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0180371

Shifts in the bacterial community composition along deep soil profiles in monospecific and mixed stands of Eucalyptus grandis and Acacia mangium
Cited by: 60
Author(s): Arthur Prudêncio de Araújo Pereira, Pedro Avelino Maia de Andrade, Daniel Bini, Ademir Durrer, Agnès Robin, J. P. Bouillet, Fernando Dini Andreote, Elke Jurandy Bran Nogueira Cardoso
Software Mentions: 2
Published: over 7 years ago

10.1038/ismej.2016.139

A family of interaction-adjusted indices of community similarity
Cited by: 36
Author(s): Thomas Sebastian Benedikt Schmidt, João F. Matias Rodrigues, Christian von Mering
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.00870

Impact of Warming on Greenhouse Gas Production and Microbial Diversity in Anoxic Peat From a Sphagnum-Dominated Bog (Grand Rapids, Minnesota, United States)
Cited by: 39
Author(s): Max Kolton, Ansley Marks, Rachel M. Wilson, Jeffrey P. Chanton, Joel E. Kostka
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0182017

Endophytic fungal communities of Polygonum acuminatum and Aeschynomene fluminensis are influenced by soil mercury contamination
Cited by: 34
Author(s): William Pietro-Souza, Ivani Souza Mello, Suzana Junges Vendruscullo, Gilvan Ferreira da Silva, Cátia Nunes da Cunha, James F. White, Marcos Antônio Soares
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-82482-z

Meta-analysis cum machine learning approaches address the structure and biogeochemical potential of marine copepod associated bacteriobiomes
Cited by: 9
Author(s): Balamurugan Sadaiappan, Chinnamani PrasannaKumar, V. Uthara Nambiar, Mahendran Subramanian, Mangesh Gauns
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pbio.2006842

Gut microbiota diversity across ethnicities in the United States
Cited by: 196
Author(s): Andrew Brooks, Sambhawa Priya, Ran Blekhman, Seth R. Bordenstein
Software Mentions: 2
Published: almost 6 years ago

10.1111/gcb.14964

Identifying potentially invasive non‐native marine and brackish water species for the Arabian Gulf and Sea of Oman
Cited by: 26
Author(s): Stacey Clarke, Lorenzo Vilizzi, Laura Lee, Louisa E. Wood, Winston J. Cowie, John A. Burt, Rusyan Jill Mamiit, Hassina Ali, Phil I. Davison, Gemma V. Fenwick, Rogan Harmer, Michał Skóra, Sebastian Kozic, Luke Aislabie, Adam Kennerley, Will J.F. Le Quesne, Gordon H. Copp, Paul Stebbing
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-83286-x

Rainfall as a trigger of ecological cascade effects in an Australian groundwater ecosystem
Cited by: 16
Author(s): Mattia Saccò, Alison J. Blyth, William F. Humphreys, Steven J. Cooper, Nicole E. White, Matthew A. Campbell, Mahsa Mousavi‐Derazmahalleh, Quan Hua, Debashish Mazumder, Colin Smith, Christian Griebler, Kliti Grice
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0212355

Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
Cited by: 42
Author(s): Sabah Ul-Hasan, Robert M. Bowers, Andrea Figueroa-Montiel, Alexei F. Licea-Navarro, J. Michael Beman, Tanja Woyke, Clarissa J. Nobile
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-83284-z

Ingestion of probiotic (Lactobacillus helveticus and Bifidobacterium longum) alters intestinal microbial structure and behavioral expression following social defeat stress
Cited by: 29
Author(s): Katherine A. Partrick, Anna M. Rosenhauer, Jérémie Auger, Amanda R. Arnold, Nicole M Ronczkowski, Lanaya M Jackson, Magen N Lord, Sara Abdulla, Benoît Chassaing, Kim L. Huhman
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.02099

Delayed Establishment of Gut Microbiota in Infants Delivered by Cesarean Section
Cited by: 49
Author(s): Gyungcheon Kim, Jaewoong Bae, Mi Jin Kim, Hyeji Kwon, Gwoncheol Park, Seok‐Jin Kim, Yon Ho Choe, Jisook Kim, Sook-Hyun Park, Byung-Ho Choe, Hakdong Shin, Ben Kang
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pbio.3001182

Glyphosate inhibits melanization and increases susceptibility to infection in insects
Cited by: 32
Author(s): Daniel F. Q. Smith, Emma Camacho, Raviraj Thakur, Alexander J. Barron, Yuemei Dong, George Dimopoulos, Nichole A. Broderick, Arturo Casadevall
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.712614

Prebiotic Supplementation During Pregnancy Modifies the Gut Microbiota and Increases Metabolites in Amniotic Fluid, Driving a Tolerogenic Environment In Utero
Cited by: 16
Author(s): Carole Brosseau, Amandine Selle, Angéline Duval, Barbara Misme-Aucouturier, Mélanie Chesneau, Sophie Brouard, Claire Cherbuy, Véronique Cariou, Grégory Bouchaud, Kyle T Mincham, Deborah H. Strickland, S. Barbarot, Marie Bodinier
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0052694

Prey Distribution, Physical Habitat Features, and Guild Traits Interact to Produce Contrasting Shorebird Assemblages among Foraging Patches
Cited by: 23
Author(s): Beth M. VanDusen, Stephen R. Fegley, Charles H. Peterson
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0150943

Deletion of the Toll-Like Receptor 5 Gene Per Se Does Not Determine the Gut Microbiome Profile That Induces Metabolic Syndrome: Environment Trumps Genotype
Cited by: 19
Author(s): Wei Zhang, Riley Hartmann, Hein Min Tun, Charles O. Elson, Ehsan Khafipour, W. Timothy Garvey
Software Mentions: 2
Published: over 8 years ago

10.1128/mSystems.00209-19

A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans
Cited by: 56
Author(s): Alfonso Benı́tez-Páez, Louise Kjølbæk, Eva M. Gómez del Pulgar, Lena K. Brahe, Arne Astrup, Silke Matysik, Hans-Frieder Schött, Sabrina Krautbauer, Gerhard Liebisch, Joanna Boberska, Sandrine P. Claus, Simone Rampelli, Patrizia Brigidi, Lesli H. Larsen, Yolanda Sanz
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83866-x

Contrasting multitaxon responses to climate change in Mediterranean mountains
Cited by: 23
Author(s): Luca Di Nuzzo, Chiara Vallese, Renato Benesperi, Paolo Giordani, Alessandro Chiarucci, Valter Di Cecco, Luciano Di Martino, Michele Di Musciano, Gabriele Gheza, Chiara Lelli, Daniel Spitale, Juri Nascimbene
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83846-1

High abundance of sugar metabolisers in saliva of children with caries
Cited by: 10
Author(s): Muhammed A.P. Manzoor, Sohvi Lommi, Jussi Furuholm, Catharina Sarkkola, Elina Engberg, Sajan C. Raju, Heli Viljakainen
Software Mentions: 2
Published: almost 4 years ago

10.1007/s11104-017-3324-8

Chemical changes in organic matter after fungal colonization in a nitrogen fertilized and unfertilized Norway spruce forest
Cited by: 10
Author(s): César Nicolás, Juan Pablo Almeida, Magnus Ellström, Adam Bahr, Sharon E. Bone, Nicholas P. Rosenstock, John R. Bargar, Anders Tunlid, Per Persson, Håkan Wallander
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-018-0174-1

Gut bacterial and fungal communities of the domesticated silkworm (Bombyx mori) and wild mulberry-feeding relatives
Cited by: 156
Author(s): Bosheng Chen, Kaiqian Du, Chao Sun, Vimalanathan Arunprasanna, Xiaoyu Liang, Yong Li, Baohong Wang, Xin-Jiang Lu, Lanjuan Li, Yongqi Shao
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00626-20

The Behavior of Amphibians Shapes Their Symbiotic Microbiomes
Cited by: 17
Author(s): Liangliang Xu, Mengmeng Xiang, Wei Zhu, Mengjie Zhang, Hua Chen, Jin Huang, Youhua Chen, Qing Chang, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: over 4 years ago

10.3390/plants9080985

Distribution and Characterization of Deep Rhodolith Beds off the Campania coast (SW Italy, Mediterranean Sea)
Cited by: 16
Author(s): Francesco Rendina, Sara Kaleb, Annalisa Caragnano, Federica Ferrigno, Luca Appolloni, Luigia Donnarumma, Gìovanni Fulvio Russo, Roberto Sandulli, Valentina Roviello, Annalisa Falace
Software Mentions: 2
Published: over 4 years ago

10.1038/s41396-018-0334-3

Seasonal and ecohydrological regulation of active microbial populations involved in DOC, CO2, and CH4 fluxes in temperate rainforest soil
Cited by: 34
Author(s): David J. Levy‐Booth, Ian Giesbrecht, Colleen T. E. Kellogg, Thierry J. Heger, D. V. D’Amore, Patrick J. Keeling, Steven J. Hallam, William W. Mohn
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00374-19

Distinct Drivers of Core and Accessory Components of Soil Microbial Community Functional Diversity under Environmental Changes
Cited by: 12
Author(s): Ximei Zhang, Eric R. Johnston, Yaosheng Wang, Qiang Yu, Dashuan Tian, Zhiping Wang, Yanqing Zhang, Daozhi Gong, Chun Luo, Wei Liu, Junjie Yang, Xingguo Han
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-84783-9

Associations between the gut microbiome and fatigue in cancer patients
Cited by: 19
Author(s): Joud Hajjar, Tito R. Mendoza, Liangliang Zhang, Siqing Fu, Sarina A. Piha-Paul, David S. Hong, Filip Janků, Daniel D. Karp, Alexej Ballhausen, Jing Gong, Abdulrazzak Zarifa, Christine B. Peterson, Funda Meric‐Bernstam, Robert R. Jenq, Aung Naing
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.02004

Taxonomy, Diet, and Developmental Stage Contribute to the Structuring of Gut-Associated Bacterial Communities in Tephritid Pest Species
Cited by: 24
Author(s): Antonios A. Augustinos, George Tsiamis, Carlos Cáceres, Adly M. M. Abd-Alla, Kostas Bourtzis
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8060942

Uncovered Microbial Diversity in Antarctic Cryptoendolithic Communities Sampling Three Representative Locations of the Victoria Land
Cited by: 10
Author(s): Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Benedetta Turchetti, Pietro Buzzini, Jason E. Stajich, Laura Selbmann
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-85538-2

Ant social foraging strategies along a Neotropical gradient of urbanization
Cited by: 10
Author(s): Wesley Dáttilo, Ian MacGregor-Fors
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0118566

Deep Sequencing and Ecological Characterization of Gut Microbial Communities of Diverse Bumble Bee Species
Cited by: 20
Author(s): Haw Chuan Lim, Chia‐Ching Chu, Manfredo J. Seufferheld, Sydney A. Cameron
Software Mentions: 2
Published: over 9 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292