cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1128/mBio.02336-20

The Native Microbiome is Crucial for Offspring Generation and Fitness of <i>Aurelia aurita</i>
Cited by: 21
Author(s): Nancy Weiland‐Bräuer, Nicole Pinnow, Daniela Langfeldt, Anna Krystyna Roik, Simon Güllert, Cynthia Maria Chibani, Thorsten B.H. Reusch, Ruth A. Schmitz
Software Mentions: 2
Published: over 5 years ago

10.1038/srep36271

Coral symbioses under prolonged environmental change: living near tolerance range limits
Cited by: 39
Author(s): Eugenia M. Sampayo, Tyrone Ridgway, Lorenzo Franceschinis, George Roff, Ove Høegh-Guldberg, Sophie Dove
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep36260

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore
Cited by: 101
Author(s): James R. Guest, Karenne Tun, Jeffrey Low, Adriana Vergés, Ezequiel M. Marzinelli, Alexandra H. Campbell, Andrew G. Bauman, David A. Feary, Loke Ming Chou, Peter D. Steinberg
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0084210

Soil Bacterial Communities Respond to Mowing and Nutrient Addition in a Steppe Ecosystem
Cited by: 47
Author(s): Ximei Zhang, Quansheng Chen, Xingguo Han
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pntd.0007672

Opportunistic pathogens and large microbial diversity detected in source-to-distribution drinking water of three remote communities in Northern Australia
Cited by: 10
Author(s): Mirjam Kaestli, Michelle O’Donnell, Alea Rose, Jessica R. Webb, Mark Mayo, Bart J. Currie, Karen S. Gibb
Software Mentions: 2
Published: almost 7 years ago

10.1128/mBio.00294-21

Effect of HIV/HAART and Other Clinical Variables on the Oral Mycobiome Using Multivariate Analyses
Cited by: 13
Author(s): Paul L. Fidel, Zach A. Thompson, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Laura Cook, Shahr B. Hashmi, Daniel J. Lisko, Chiranjit Mukherjee, José Antonio Vázquez, Michael E. Hagensee, Ann L. Griffen, Eugene J. Leys, Clifford J. Beall
Software Mentions: 2
Published: over 5 years ago

10.1038/srep36672

Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest
Cited by: 23
Author(s): Witoon Purahong, Walter Durka, Markus Fischer, Sven Dommert, Ricardo Schöps, François Buscot, Tesfaye Wubet
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pntd.0007697

Systems analysis-based assessment of post-treatment adverse events in lymphatic filariasis
Cited by: 11
Author(s): Britt Andersen, Bruce A. Rosa, Jonah Kupritz, Aboulaye Meïté, Traye Serge, Marla I. Hertz, Kurt C. Curtis, Christopher L. King, Makedonka Mitreva, Peter Fischer, Gary J. Weil
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0222069

Vegetation communities on commercial developments are heterogenous and determined by development and landscaping decisions, not socioeconomics
Cited by: 4
Author(s): Karen Dyson
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2021.649694

In planta Activity of Novel Copper(II)-Based Formulations to Inhibit the Esca-Associated Fungus Phaeoacremonium minimum in Grapevine Propagation Material
Cited by: 9
Author(s): Enrico Battiston, Stéphane Compant, Livio Antonielli, Vincenzo Mondello, Christophe Clément, Andrea Simoni, Stefano Di Marco, Laura Mugnai, Florence Fontaine
Software Mentions: 2
Published: over 5 years ago

10.3390/nu11030664

Procyanidin—Cell Wall Interactions within Apple Matrices Decrease the Metabolization of Procyanidins by the Human Gut Microbiota and the Anti-Inflammatory Effect of the Resulting Microbial Metabolome In Vitro
Cited by: 39
Author(s): Carine Le Bourvellec, Priscilla Bagano Vilas Boas, Pascale Lepercq, Sophie Comtet-Marre, Pauline Auffret, Philippe Ruiz, Raoul Bott, Cathérine M.G.C. Renard, Claire Dufour, Jean‐Marc Chatel, Pascale Mosoni
Software Mentions: 2
Published: over 7 years ago

10.3390/nu13030713

Multiple Selection Criteria for Probiotic Strains with High Potential for Obesity Management
Cited by: 16
Author(s): Jeanne Alard, Benoît Cudennec, Denise Boutillier, Véronique Peucelle, Amandine Descat, Raphael Decoin, Sarah Kuylle, Amin Jablaoui, Moez Rhimi, Isabelle Wolowczuk, Bruno Pot, Anne Tailleux, Emmanuelle Maguin, Sophie Holowacz, Corinne Grangette
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0216785

Variability in the functional composition of coral reef fish communities on submerged and emergent reefs in the central Great Barrier Reef, Australia
Cited by: 8
Author(s): Amanda Cooper, Chancey MacDonald, Thomas E. Roberts, Tom C. L. Bridge
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2020.584081

Does the Rarity of a Flower’s Scent Phenotype in a Deceptive Orchid Explain Its Pollination Success?
Cited by: 5
Author(s): Herbert Braunschmid, Stefan Dötterl
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pntd.0006739

Bacterial community composition in the salivary glands of triatomines (Hemiptera: Reduviidae)
Cited by: 15
Author(s): Michele S. Lima, Marinella Silva Laport, Elias Seixas Lorosa, José Jurberg, Kátia Regina Netto dos Santos, Mário Alberto Cardoso da Silva Neto, Caio Tavora Coelho da Costa Rachid, Geórgia C. Atella
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pgen.1007943

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events
Cited by: 92
Author(s): Tina E. Berry, Benjamin J. Saunders, Megan L. Coghlan, Michael Stat, Simon Jarman, Anthony J. Richardson, Claire Davies, Oliver Berry, Euan S. Harvey, Michael Bunce
Software Mentions: 2
Published: over 7 years ago

10.1038/srep40189

Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil
Cited by: 34
Author(s): Eoin Gunnigle, Aline Frossard, Jean‐Baptiste Ramond, Leandro D. Guerrero, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: over 9 years ago

10.1038/srep40864

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
Cited by: 124
Author(s): Kimberly A. Dill‐McFarland, Jacob D. Breaker, Garret Suen
Software Mentions: 2
Published: over 9 years ago

10.1038/srep40702

Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems
Cited by: 63
Author(s): Kathryn Korbel, Anthony A. Chariton, Sarah Stephenson, Paul Greenfield, Grant C. Hose
Software Mentions: 2
Published: over 9 years ago

10.1128/mBio.01777-21

Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome
Cited by: 66
Author(s): Carter Merenstein, Guanxiang Liang, Samantha A. Whiteside, Ana G Cobián-Güemes, Madeline S Merlino, Louis J. Taylor, Abigail Glascock, Kyle Bittinger, Ceylan Tanes, Jevon Graham-Wooten, Layla A. Khatib, Ayannah S. Fitzgerald, Shantan Reddy, Amy E. Baxter, Josephine R. Giles, Derek A. Oldridge, Nuala J. Meyer, E. John Wherry, John E. McGinniss, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pcbi.1006102

Correcting for batch effects in case-control microbiome studies
Cited by: 99
Author(s): Sean M. Gibbons, Claire Duvallet, Eric J. Alm
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0223067

Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries
Cited by: 13
Author(s): Theresa K. Hattenrath-Lehmann, Jennifer G. Jankowiak, Florian Koch, Christopher J. Gobler
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0226159

Low-diversity bacterial microbiota in Southern Ocean representatives of lanternfish genera Electrona, Protomyctophum and Gymnoscopelus (family Myctophidae)
Cited by: 10
Author(s): Alison Gallet, Philippe Koubbi, Nelly Léger, Mathilde Scheifler, Magdalena Ruiz‐Rodríguez, Marcelino T. Suzuki, Yves Desdevises, Sébastien Duperron
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0100587

Stepwise Threshold Clustering: A New Method for Genotyping MHC Loci Using Next-Generation Sequencing Technology
Cited by: 36
Author(s): William E. Stutz, Daniel I. Bolnick
Software Mentions: 2
Published: about 12 years ago

10.1038/srep41234

Paenibacillus polymyxa NSY50 suppresses Fusarium wilt in cucumbers by regulating the rhizospheric microbial community
Cited by: 50
Author(s): Lu Shi, Nanshan Du, Sheng Shu, Jian Sun, Shuzhan Li, Shirong Guo
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00327-17

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young
Cited by: 130
Author(s): Gaorui Bian, Gregory B. Gloor, Aihua Gong, Changsheng Jia, Wei Zhang, Jun Hu, Hong Zhang, Yumei Zhang, Zhiyong Zhou, Jiangao Zhang, Jeremy P. Burton, Gregor Reid, Yongliang Xiao, Qiang Zeng, Kaiping Yang, Jiangang Li
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSphere.00366-17

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon
Cited by: 8
Author(s): Bruno S. de O. Silva, Felipe H. Coutinho, Gustavo Bueno Gregoracci, Luciana Leomil, Louisi Souza de Oliveira, Adriana M. Fróes, Diogo A. Tschoeke, Ana Carolina Soares, Anderson de Souza Cabral, Nicholas D. Ward, Jeffrey E. Richey, Alex V. Krusche, Patricia L. Yager, Carlos Eduardo de Rezende, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSphereDirect.00527-17

Subgingival Microbiome Colonization and Cytokine Production during Early Dental Implant Healing
Cited by: 12
Author(s): Jeffrey B. Payne, Paul G. Johnson, Car Reen Kok, João Carlos Gomes-Neto, Amanda E. Ramer‐Tait, Marian J. Schmid, Robert W. Hutkins
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.2006842

Gut microbiota diversity across ethnicities in the United States
Cited by: 196
Author(s): Andrew Brooks, Sambhawa Priya, Ran Blekhman, Seth R. Bordenstein
Software Mentions: 2
Published: over 7 years ago

10.1128/mSphere.00418-17

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish
Cited by: 48
Author(s): Anti Vasemägi, Marko Visse, Veljo Kisand
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.621126

Livestock Manure Type Affects Microbial Community Composition and Assembly During Composting
Cited by: 43
Author(s): Jinxin Wan, Xiaofang Wang, Tianjie Yang, Samiran Banerjee, Ville‐Petri Friman, Xinlan Mei, Yangchun Xu, Qirong Shen
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.00792

Differing Complex Microbiota Alter Disease Severity of the IL-10−/− Mouse Model of Inflammatory Bowel Disease
Cited by: 39
Author(s): Marcia L. Hart, Aaron C. Ericsson, Craig L. Franklin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pbio.3001182

Glyphosate inhibits melanization and increases susceptibility to infection in insects
Cited by: 32
Author(s): Daniel F. Q. Smith, Emma Camacho, Raviraj Thakur, Alexander J. Barron, Yuemei Dong, George Dimopoulos, Nichole A. Broderick, Arturo Casadevall
Software Mentions: 2
Published: over 5 years ago

10.1007/s11104-017-3324-8

Chemical changes in organic matter after fungal colonization in a nitrogen fertilized and unfertilized Norway spruce forest
Cited by: 10
Author(s): César Nicolás, Juan Pablo Almeida, Magnus Ellström, Adam Bahr, Sharon E. Bone, Nicholas P. Rosenstock, John R. Bargar, Anders Tunlid, Per Persson, Håkan Wallander
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2019.00205

What Do Nectarivorous Bats Like? Nectar Composition in Bromeliaceae With Special Emphasis on Bat-Pollinated Species
Cited by: 17
Author(s): Thomas Göttlinger, Michael Schwerdtfeger, Kira Tiedge, Gertrud Lohaus
Software Mentions: 2
Published: over 7 years ago

10.1128/mSphere.00229-18

Potential Mechanism of Detoxification of Cyanide Compounds by Gut Microbiomes of Bamboo-Eating Pandas
Cited by: 49
Author(s): Lifeng Zhu, Yang Zhang, Ru Yao, Liangliang Xu, Hua Chen, Xun Gu, Tonggui Wu, Xiangdong Yang
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0225711

Examining transmission of gut bacteria to preserved carcass via anal secretions in Nicrophorus defodiens
Cited by: 10
Author(s): Christopher James Miller, Scott T. Bates, Lindsay M. Gielda, J. Curtis Creighton
Software Mentions: 2
Published: over 6 years ago

10.3390/plants9080985

Distribution and Characterization of Deep Rhodolith Beds off the Campania coast (SW Italy, Mediterranean Sea)
Cited by: 16
Author(s): Francesco Rendina, Sara Kaleb, Annalisa Caragnano, Federica Ferrigno, Luca Appolloni, Luigia Donnarumma, Gìovanni Fulvio Russo, Roberto Sandulli, Valentina Roviello, Annalisa Falace
Software Mentions: 2
Published: about 6 years ago

10.1038/srep43483

Effect of predatory bacteria on the gut bacterial microbiota in rats
Cited by: 51
Author(s): Kenneth Shatzkes, Chi Tang, Eric Singleton, Sean Shukla, Michael Zuena, Sudeep Gupta, Sonal Dharani, Joseph Rinaggio, Nancy Connell, Daniel E. Kadouri
Software Mentions: 2
Published: over 9 years ago

10.1038/srep44182

Stress during pregnancy alters temporal and spatial dynamics of the maternal and offspring microbiome in a sex-specific manner
Cited by: 156
Author(s): Eldin Jašarević, Christopher D. Howard, Ana M. Misic, Daniel P. Beiting, Tracy L. Bale
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0224641

Effects of initial microbial biomass abundance on respiration during pine litter decomposition
Cited by: 7
Author(s): Michaeline B. N. Albright, Andreas Runde, Deanna Lopez, Jason Gans, Sanna Sevanto, Dominic Woolf, John Dunbar
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.00836

Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity
Cited by: 53
Author(s): Mari Pent, Kadri Põldmaa, Mohammad Bahram
Software Mentions: 2
Published: over 9 years ago

10.1038/srep44382

Linking the Belowground Microbial Composition, Diversity and Activity to Soilborne Disease Suppression and Growth Promotion of Tomato Amended with Biochar
Cited by: 134
Author(s): Amit K. Jaiswal, Y. Elad, Indira Paudel, Ellen R. Graber, Eddie Cytryn, Omer Frenkel
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00679-18

Comparison of Subtyping Approaches and the Underlying Drivers of Microbial Signatures for Chronic Rhinosinusitis
Cited by: 16
Author(s): Kristi Biswas, Raewyn Cavubati, Shan Gunaratna, Michael Hoggard, Sharon Waldvogel-Thurlow, Jiwon Hong, Kevin Chang, Brett Wagner Mackenzie, Michael W. Taylor, Richard Douglas
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms8111694

Seasonal Patterns of Dominant Microbes Involved in Central Nutrient Cycles in the Subsurface
Cited by: 11
Author(s): Patrick Lohmann, Simon Benk, Gerd Gleixner, Karin Potthast, Beate Michalzik, Nico Jehmlich, Martin von Bergen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.691216

Subgingival Microbiome and Specialized Pro-Resolving Lipid Mediator Pathway Profiles Are Correlated in Periodontal Inflammation
Cited by: 12
Author(s): Chun‐Teh Lee, Ruoxing Li, Lisha Zhu, Gena D. Tribble, W. Jim Zheng, Brittney Ferguson, Krishna Rao Maddipati, Nikola Angelov, Thomas E. Van Dyke
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8122040

Comparative Gut Microbiome Differences between Ferric Citrate and Calcium Carbonate Phosphate Binders in Patients with End-Stage Kidney Disease
Cited by: 16
Author(s): Ping Wu, Po-Yu Liu, Ya Wen Chiu, Wen Chun Hung, Yi Ting Lin, Ting Yun Lin, Szu Chun Hung, Rachel Ann Delicano, Mei Chuan Kuo, Chun Ying Wu
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00446-19

Quantitatively Partitioning Microbial Genomic Traits among Taxonomic Ranks across the Microbial Tree of Life
Cited by: 4
Author(s): T. M. Royalty, Andrew D. Steen
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms221910871

Characterization of the Human Eccrine Sweat Proteome—A Focus on the Biological Variability of Individual Sweat Protein Profiles
Cited by: 7
Author(s): Bastien Burat, A. Reynaerts, Dominique Baiwir, Maximilien Fléron, Gauthier Eppe, Teresinha Leal, Gabriel Mazzucchelli
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0241732

Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types
Cited by: 7
Author(s): Michael Edward C Abundo, John M. Ngunjiri, Kara Taylor, Hana Ji, Amir Ghorbani, Mahesh Kc, Bonnie Weber, Timothy J. Johnson, Chang-Won Lee
Software Mentions: 2
Published: over 5 years ago

10.1111/mec.15090

Dietary partitioning promotes the coexistence of planktivorous species on coral reefs
Cited by: 27
Author(s): Matthieu Leray, Alice L. Alldredge, Jen‐Hao Yang, Christopher P. Meyer, Sally J. Holbrook, Russell J. Schmitt, Nancy Knowlton, Andrew J. Brooks
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.636198

Thermoneutrality Alters Gastrointestinal Antigen Passage Patterning and Predisposes to Oral Antigen Sensitization in Mice
Cited by: 6
Author(s): Taeko K. Noah, Jee‐Boong Lee, Christopher Brown, Amnah Yamani, Sunil Tomar, Varsha Ganesan, Rodney D. Newberry, Gary B. Huffnagle, Senad Divanovic, Simon P. Hogan
Software Mentions: 2
Published: over 5 years ago

10.1111/mec.15369

Environmental plasticity and colonisation history in the Atlantic salmon microbiome: A translocation experiment
Cited by: 52
Author(s): Tamsyn M. Uren Webster, Deiene Rodríguez‐Barreto, Giovanni Castaldo, Peter Gough, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 2
Published: over 6 years ago

10.1038/srep46297

Inorganic carbon physiology underpins macroalgal responses to elevated CO2
Cited by: 107
Author(s): Christopher E. Cornwall, Andrew T. Revill, Jason M. Hall‐Spencer, Marco Milazzo, John A. Raven, Catriona L. Hurd
Software Mentions: 2
Published: over 9 years ago

10.1111/mec.14696

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels
Cited by: 33
Author(s): Mia M. Bengtsson, Karoline Wagner, Clarissa Schwab, Tim Urich, Tom J. Battin
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0207940

Seasonal changes in diet and chemical defense in the Climbing Mantella frog (Mantella laevigata)
Cited by: 16
Author(s): Nora A. Moskowitz, Alexandre B. Roland, Eva K. Fischer, Ndimbintsoa Ranaivorazo, Charles Vidoudez, Marianne T. Aguilar, Sophia Caldera, Jacqueline Chea, Miruna G. Cristus, Jett Crowdis, Bluyé DeMessie, Caroline R. DesJardins-Park, Audrey H. Effenberger, Felipe N. Flores, M. A. Giles, Emma Y. He, Nike S. Izmaylov, ChangWon C. Lee, Nicholas A. Pagel, Krystal K Phu, Leah U. Rosen, Danielle A. Seda, Yong Shen, Santiago Vargas, Andrew W. Murray, Eden Abebe, Sunia A. Trauger, David A. Donoso, Miguel Vences, Lauren A. O’Connell
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms8081126

Heritability of Oral Microbiota and Immune Responses to Oral Bacteria
Cited by: 11
Author(s): Anders Esberg, Simon Haworth, Ralf Kuja‐Halkola, Patrik K. E. Magnusson, Ingegerd Johansson
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21249509

Comprehensive Analysis Reveals Novel Interactions between Circulating MicroRNAs and Gut Microbiota Composition in Human Obesity
Cited by: 20
Author(s): Taís Silveira Assmann, Amelia Marti, José Ignacio Riezu-Boj, Fermı́n I. Milagro, J. Alfredo Martínéz
Software Mentions: 2
Published: over 5 years ago

10.1007/s11033-020-05786-9

Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis
Cited by: 0
Author(s): Lukas Zangl, Hannes Oberreiter, Herbert Huss, Edith Stabentheiner, Christian Sturmbauer, Stephan Koblmüller
Software Mentions: 2
Published: almost 6 years ago

10.1093/molbev/msaa301

Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity
Cited by: 60
Author(s): Francisco J. Ruíz-Dueñas, J. M. Barrasa, Marisol Sánchez-García, Susana Camarero, Shingo Miyauchi, Ana Serrano, Dolores Linde, Rashid Babiker, Élodie Drula, Iván Ayuso‐Fernández, Remedios Pacheco, Guillermo Zermeño Padilla, Patricia Ferreira, Jorge Barriuso, Harald Kellner, Raúl Castanera, Manuel Alfaro, Lucı́a Ramı́rez, Antonio G. Pisabarro, Robert Riley, Alan Kuo, William Andreopoulos, Kurt LaButti, Jasmyn Pangilinan, Andrew Tritt, Anna Lipzen, Guifen He, Mi Yan, Vivian Ng, Igor V. Grigoriev, Daniel Cullen, Francis Martin, Marie‐Noëlle Rosso, Bernard Henrissat, David S. Hibbett, Ángel T. Martı́nez
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2020.572199

Changes in the Microbiome in the Soil of an American Ginseng Continuous Plantation
Cited by: 35
Author(s): Ji‐Guang Zhang, Shaohui Fan, Jun Qin, Jichen Dai, Fang‐Jie Zhao, Liqiang Gao, Xihong Lian, Wenjing Shang, Xiangming Xu, Xiaoping Hu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0102130

Characterization of the Bacterial Communities of Life Stages of Free Living Lone Star Ticks (Amblyomma americanum)
Cited by: 77
Author(s): Amanda Jo Williams-Newkirk, Lori A. Rowe, Tonya Mixson‐Hayden, Gregory A. Dasch
Software Mentions: 2
Published: about 12 years ago

10.1038/s41598-017-00953-8

Responses of denitrifying bacterial communities to short-term waterlogging of soils
Cited by: 34
Author(s): Yong Wang, Yoshitaka Uchida, Yumi Shimomura, Hiroko Akiyama, Masahito Hayatsu
Software Mentions: 2
Published: over 9 years ago

10.3390/nu12030732

α-Linolenic Acid-Rich Diet Influences Microbiota Composition and Villus Morphology of the Mouse Small Intestine
Cited by: 21
Author(s): Hristo Todorov, Bettina Kollar, Franziska Bayer, Inês Brandão, Amrit Mann, Julia Mohr, Giulia Pontarollo, Henning Formes, Roland H. Stauber, Jens M. Kittner, Kristina Endres, Bernhard Watzer, Wolfgang Andreas Nockher, Felix Sommer, Susanne Gerber, Carsten Reinhardt
Software Mentions: 2
Published: over 6 years ago

10.1093/molbev/msw119

Sex, Scavengers, and Chaperones: Transcriptome Secrets of Divergent<i>Symbiodinium</i>Thermal Tolerances
Cited by: 110
Author(s): Rachel A. Levin, Victor H. Beltran, Ross Hill, Staffan Kjelleberg, Diane McDougald, Peter D. Steinberg, Madeleine J. H. van Oppen
Software Mentions: 2
Published: about 10 years ago

10.3390/microorganisms9020205

Taxonomic and Functional Diversity of Heterotrophic Protists (Cercozoa and Endomyxa) from Biological Soil Crusts
Cited by: 15
Author(s): Samira Khanipour Roshan, Kenneth Dumack, Michael Bonkowski, Peter Leinweber, Ulf Karsten, Karin Glaser
Software Mentions: 2
Published: over 5 years ago

10.3390/nu12082193

Dynamics of Structural and Functional Changes in Gut Microbiota during Treatment with a Microalgal β-Glucan, Paramylon and the Impact on Gut Inflammation
Cited by: 12
Author(s): Harrison B. Taylor, Radhika Gudi, Robert R. Brown, Chenthamarakshan Vasu
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms8101500

Multi-Omic Analysis Reveals Different Effects of Sulforaphane on the Microbiome and Metabolome in Old Compared to Young Mice
Cited by: 11
Author(s): Se‐Ran Jun, Amrita K. Cheema, Chhanda Bose, Marjan Boerma, Philip Palade, Eugénia Carvalho, Yogesh C. Awasthi, Sharda P. Singh
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0162470

Decrease of Population Divergence in Eurasian Perch (Perca fluviatilis) in Browning Waters: Role of Fatty Acids and Foraging Efficiency
Cited by: 12
Author(s): Kristin Scharnweber, Ursula Strandberg, Konrad Karlsson, Peter Eklöv
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-017-01359-2

Effect of spatio-temporal shifts in salinity combined with other environmental variables on the ecological processes provided by Zostera noltei meadows
Cited by: 13
Author(s): Ana I. Sousa, Ricardo Calado, Daniel F. R. Cleary, Cláudia Nunes, Manuel A. Coimbra, João Serôdio, Ana I. Lillebø
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01212-6

Determination of nasal and oropharyngeal microbiomes in a multicenter population-based study – findings from Pretest 1 of the German National Cohort
Cited by: 15
Author(s): Manas K. Akmatov, Nadine Koch, Marius Vital, Wolfgang Ahrens, Dieter Flesch-Janys, Julia Fricke, Anja Gatzemeier, Halina Greiser, Kathrin Günther, Thomas Illig, Rudolf Kaaks, Bastian Krone, Andrea A. Kühn, Jakob Linseisen, Christine Meisinger, Karin B. Michels, Susanne Moebus, Alexandra Nieters, Nadia Obi, Anja Schultze, Julia Six-Merker, Dietmar H. Pieper, Frank Peßler
Software Mentions: 2
Published: over 9 years ago

10.3390/nu13072269

Oral Ferric Maltol Does Not Adversely Affect the Intestinal Microbiome of Patients or Mice, but Ferrous Sulphate Does
Cited by: 9
Author(s): Awad Mahalhal, Alessandra Frau, Michael D. Burkitt, Umer Zeeshan Ijaz, Christopher A Lamb, John C. Mansfield, Stephen J. Lewis, D. Mark Pritchard, Chris Probert
Software Mentions: 2
Published: about 5 years ago

10.3390/nu13041066

Analysis of the Gut Mycobiome in Adult Patients with Type 1 and Type 2 Diabetes Using Next-Generation Sequencing (NGS) with Increased Sensitivity—Pilot Study
Cited by: 14
Author(s): Dominika Salamon, Agnieszka Sroka-Oleksiak, Artur Gurgul, Zbigniew Arent, Magdalena Szopa, Małgorzata Bulanda, Maciej Małecki, Tomasz Gosiewski
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0131598

Spatial Patterns and Temperature Predictions of Tuna Fatty Acids: Tracing Essential Nutrients and Changes in Primary Producers
Cited by: 51
Author(s): Heidi Pethybridge, Christopher C. Parrish, John R. Morrongiello, Jock Young, Jessica Farley, Rasanthi M. Gunasekera, Peter D. Nichols
Software Mentions: 2
Published: about 11 years ago

10.3390/microorganisms8030347

Aflatoxins: Occurrence, Exposure, and Binding to Lactobacillus Species from the Gut Microbiota of Rural Ugandan Children
Cited by: 12
Author(s): Alex Paul Wacoo, Prudence Atukunda, Grace Kyamazima Mehangye Muhoozi, Martin Braster, Marijke J. Wagner, Tim van den Broek, Wilbert Sybesma, Ane C. Westerberg, Per Ole Iversen, Remco Kort
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms9081687

Altered Fecal Microbiotas and Organic Acid Concentrations Indicate Possible Gut Dysbiosis in University Rugby Players: An Observational Study
Cited by: 3
Author(s): So Morishima, Nobuyuki Oda, Hiromi Ito, Tomohiro Segawa, Machi Oda, Takamitsu Tsukahara, Yasuharu Kawase, Tomohisa Takagi, Yuji Naito, Mami Fujibayashi, Ryo Inoüe
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8071011

Autoimmune Hepatitis: Shifts in Gut Microbiota and Metabolic Pathways among Egyptian Patients
Cited by: 26
Author(s): Nahla M Elsherbiny, Mohammed Rammadan, Elham Ahmed Hassan, Marfoua S. Ali, Abeer S. Abd El-Rehim, Wael A. Abbas, Mohamed A A Abozaid, Ebtisam Hassanin, Helal F Hetta
Software Mentions: 2
Published: about 6 years ago

10.1128/mSphere.00991-20

Effects of Seasonal Anoxia on the Microbial Community Structure in Demosponges in a Marine Lake in Lough Hyne, Ireland
Cited by: 4
Author(s): Astrid Schuster, Brian Strehlow, Lisa K. Eckford-Soper, Rob McAllen, Donald E. Canfield
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-02258-2

Effects of replacing Leymus chinensis with whole-crop wheat hay on Holstein bull apparent digestibility, plasma parameters, rumen fermentation, and microbiota
Cited by: 19
Author(s): Wen-jing Niu, Yang He, Chuanqi Xia, Muhammad Aziz Rahman, Qinghua Qiu, Tao Shao, Yixun Liang, Linbao Ji, Haibo Wang, Binghai Cao
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00208-21

Cyanophage Diversity and Community Structure in Dead Zone Sediments
Cited by: 8
Author(s): Elias Broman, Karin Holmfeldt, Stefano Bonaglia, Per Hall, Francisco J. A. Nascimento
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms7050123

Microbial and Functional Profile of the Ceca from Laying Hens Affected by Feeding Prebiotics, Probiotics, and Synbiotics
Cited by: 19
Author(s): C. Pineda-Quiroga, Daniel Borda-Molina, Diego Chaves‐Moreno, R. Ruíz, Raquel Atxaerandio, Amélia Camarinha‐Silva, A. García-Rodríguez
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-02363-2

Seasonal soil microbial responses are limited to changes in functionality at two Alpine forest sites differing in altitude and vegetation
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2021.618140

Mycorrhizal Communities and Isotope Signatures in Two Partially Mycoheterotrophic Orchids
Cited by: 12
Author(s): Hans Jacquemyn, Rein Brys, Michael Waud, Alexandra Evans, Tomáš Figura, Marc‐André Selosse
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8111699

The Diversity, Composition, and Putative Functions of Gill-Associated Bacteria of Bathymodiolin Mussel and Vesicomyid Clam from Haima Cold Seep, South China Sea
Cited by: 6
Author(s): Juan Ling, Huashi Guan, Lihua Liu, Jun Tao, Jie Li, Jinyun Dong, Si Zhang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2018.00213

Trichoderma-Inoculated Miscanthus Straw Can Replace Peat in Strawberry Cultivation, with Beneficial Effects on Disease Control
Cited by: 21
Author(s): Jane Debode, Caroline De Tender, Pieter Cremelie, Ana Shein Lee, Tina Kyndt, Hilde Muylle, Tom De Swaef, Bart Vandecasteele
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0143838

Comparative Allometric Growth of the Mimetic Ephippid Reef Fishes Chaetodipterus faber and Platax orbicularis
Cited by: 5
Author(s): Breno Barros, Yoichi Sakai, Pedro Henrique Cipresso Pereira, Eric Gasset, Vincent Buchet, Moana Maamaatuaiahutapu, Jonathan Stuart Ready, Yrlan Oliveira, Tommaso Giarrizzo, Marcelo Vallinoto
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-017-03095-z

Comparison of the active and resident community of a coastal microbial mat
Cited by: 33
Author(s): Daniela Clara Cardoso, Anna Sandionigi, Mariana Silvia Cretoiu, Maurizio Casiraghi, Lucas J. Stal, Henk Bolhuis
Software Mentions: 2
Published: about 9 years ago

10.3390/cancers13133332

Colorectal Cancer Patients Have Four Specific Bacterial Species in Oral and Gut Microbiota in Common—A Metagenomic Comparison with Healthy Subjects
Cited by: 18
Author(s): Yoshinori Uchino, Yuichi Goto, Yusuke Konishi, Kan Tanabe, Hiroko Toda, Mitsuru Wada, Yoshiaki Kita, Mahiro Beppu, Shinichiro Mori, Hiroshi Hara, Takao Otsuka, Shoji Natsugoe, Eiji Hara, Tetsuro Sugiura
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms8111811

Duodenal Metatranscriptomics to Define Human and Microbial Functional Alterations Associated with Severe Obesity: A Pilot Study
Cited by: 10
Author(s): Ilaria Granata, Carmela Nardelli, Valeria D’Argenio, Salvatore Tramontano, Debora Compare, Mario Rosario Guarracino, Gerardo Nardone, Vincenzo Pilone, Lucia Sacchetti
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers12092619

Alterations in Gastric Microbial Communities Are Associated with Risk of Gastric Cancer in a Korean Population: A Case-Control Study
Cited by: 10
Author(s): Madhawa Gunathilake, Jeonghee Lee, Il Ju Choi, Young Il Kim, Jaekyung Yoon, Woo Jun Sul, Jihyun F. Kim, Jeongseon Kim
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.02478

Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities
Cited by: 25
Author(s): Eria A. Rebollar, Edson Sandoval‐Castellanos, Kyria Roessler, Brandon S. Gaut, Luis David Alcaraz, Mariana Benítez, Ana E. Escalante
Software Mentions: 2
Published: over 8 years ago

10.1186/s12974-021-02122-1

Neuroprotective effect of mitochondrial translocator protein ligand in a mouse model of tauopathy
Cited by: 21
Author(s): Lauren H. Fairley, Naruhiko Sahara, Ichio Aoki, Bin Ji, Tetsuya Suhara, Makoto Higuchi, Anna M. Barron
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.01485

Persistent Infection by Wolbachia wAlbB Has No Effect on Composition of the Gut Microbiota in Adult Female Anopheles stephensi
Cited by: 21
Author(s): Shicheng Chen, Jiangchao Zhao, Deeksha Joshi, Zhiyong Xi, Beth C. Norman, Edward D. Walker
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-017-03568-1

An Assessment of Mobile Predator Populations along Shallow and Mesophotic Depth Gradients in the Hawaiian Archipelago
Cited by: 21
Author(s): Jacob Asher, Ivor D. Williams, Euan S. Harvey
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0138271

Local and Regional Impacts of Pollution on Coral Reefs along the Thousand Islands North of the Megacity Jakarta, Indonesia
Cited by: 63
Author(s): Gunilla Baum, Hedi Indra Januar, Sebastian C. A. Ferse, Andreas Kunzmann
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0080365

Augmentative Biocontrol in Natural Marine Habitats: Persistence, Spread and Non-Target Effects of the Sea Urchin Evechinus chloroticus
Cited by: 20
Author(s): Javier Atalah, Grant A. Hopkins, Barrie M. Forrest
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-017-05241-z

Effects of suspended sediments on the sponge holobiont with implications for dredging management
Cited by: 36
Author(s): Mari Carmen Pineda, Brian Strehlow, Miriam Sternel, Alan Duckworth, Ross Jones, Nicole S. Webster
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0142536

Antepartum Antibiotic Treatment Increases Offspring Susceptibility to Experimental Colitis: A Role of the Gut Microbiota
Cited by: 117
Author(s): Peris M. Munyaka, Nour Eissa, Çharles N. Bernstein, Ehsan Khafipour, Jean–Eric Ghia
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms22041649

Gut Microbiota Profile in Children with IgE-Mediated Cow’s Milk Allergy and Cow’s Milk Sensitization and Probiotic Intestinal Persistence Evaluation
Cited by: 10
Author(s): Maurizio Mennini, Sofia Reddel, Federica Del Chierico, Simone Gardini, Andrea Quagliariello, Pamela Vernocchi, Rocco Valluzzi, Vincenzo Fierro, Carla Riccardi, Tania Napolitano, Alessandro Fiocchi, Lorenza Putignani
Software Mentions: 2
Published: over 5 years ago

10.1128/mSphere.00467-21

Seasonal Dietary Shifts Alter the Gut Microbiota of Avivorous Bats: Implication for Adaptation to Energy Harvest and Nutritional Utilization
Cited by: 9
Author(s): Lixin Gong, Boyu Liu, Hui Wu, Feng Jiang, Tinglei Jiang
Software Mentions: 2
Published: about 5 years ago

Projects: cran: PERMANOVA

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Papers Mentioning PERMANOVA 6,292