cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1038/s41396-018-0326-3

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
Cited by: 83
Author(s): Greta Reintjes, Carol Arnosti, Bernhard M. Fuchs, Rudolf Amann
Software Mentions: 2
Published: almost 6 years ago

10.3390/ani11061658

A Grain-Based SARA Challenge Affects the Composition of Epimural and Mucosa-Associated Bacterial Communities throughout the Digestive Tract of Dairy Cows
Cited by: 5
Author(s): J.C. Plaizier, Anne Mette Danscher, Paula Azevedo, Hooman Derakhshani, Pia Haubro Andersen, Ehsan Khafipour
Software Mentions: 2
Published: over 3 years ago

10.1038/s41396-021-00925-x

Host genetics exerts lifelong effects upon hindgut microbiota and its association with bovine growth and immunity
Cited by: 34
Author(s): Peixin Fan, Corwin D. Nelson, Joseph Driver, Mauricio A. Elzo, Francisco Peñagaricano, KwangCheol Casey Jeong
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41396-019-0438-4

Unveiled feather microcosm: feather microbiota of passerine birds is closely associated with host species identity and bacteriocin-producing bacteria
Cited by: 23
Author(s): Veronika Javůrková, Jakub Kreisinger, Petr Procházka, Milica Požgayová, Kateřina Ševčíková, Vojtěch Brlík, Peter Adamík, Petr Heneberg, Jiří Porkert
Software Mentions: 2
Published: over 5 years ago

10.3390/ani10050879

Early-Life Intake of an Isotonic Protein Drink Improves the Gut Microbial Profile of Piglets
Cited by: 0
Author(s): Stefan G. Buzoianu, Ava Firth, CallaBria Putrino, Fábio A. Vannucci
Software Mentions: 2
Published: over 4 years ago

10.3390/ani11061825

Metagenomic Analysis of the Fecal Archaeome in Suckling Piglets Following Perinatal Tulathromycin Metaphylaxis
Cited by: 3
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brian Aldridge, James Lowe
Software Mentions: 2
Published: over 3 years ago

10.3390/ani10010017

Early Parenteral Administration of Ceftiofur has Gender-Specific Short- and Long-Term Effects on the Fecal Microbiota and Growth in Pigs from the Suckling to Growing Phase
Cited by: 24
Author(s): Ursula Ruczizka, Barbara U. Metzler‐Zebeli, Christine Unterweger, Evelyne Mann, Lukas Schwarz, Christian Knecht, Isabel Hennig-Pauka
Software Mentions: 2
Published: almost 5 years ago

10.3390/ani10061014

Human–Wildlife Conflicts in Krakow City, Southern Poland
Cited by: 12
Author(s): Sayantani M. Basak, Izabela A. Wierzbowska, Agnieszka Gajda, Marcin Czarnołęski, Maciej Lesiak, Elżbieta Widera
Software Mentions: 2
Published: over 4 years ago

10.1111/jfb.12998

An assessment of juvenile Atlantic cod <i>Gadus morhua</i> distribution and growth using diver operated stereo‐video surveys
Cited by: 3
Author(s): Sophie Elliott, Pauliina A. Ahti, Michael R. Heath, W.R. Turrell, David M. Bailey
Software Mentions: 2
Published: over 8 years ago

10.3390/jof5010015

High-Throughput Sequencing to Investigate Phytopathogenic Fungal Propagules Caught in Baited Insect Traps
Cited by: 11
Author(s): Émilie D. Tremblay, Troy Kimoto, Jean A. Bérubé, Guillaume J. Bilodeau
Software Mentions: 2
Published: almost 6 years ago

10.3390/ani10081429

Effect of Dietary Supplementation with Coarse or Extruded Oat Hulls on Growth Performance, Blood Biochemical Parameters, Ceca Microbiota and Short Chain Fatty Acids in Broiler Chickens
Cited by: 6
Author(s): Deborah Adewole
Software Mentions: 2
Published: over 4 years ago

10.3390/jof7050321

Exploring the Diversity of Fungal DyPs in Mangrove Soils to Produce and Characterize Novel Biocatalysts
Cited by: 5
Author(s): A. Ayed, Geoffroy Saint-Genis, Laurent Vallon, Dolores Linde, Annick Turbé-Doan, Mireille Haon, Mariane Daou, Emmanuel Bertrand, Craig B. Faulds, Giuliano Sciara, Martino Adamo, Roland Marmeisse, Sophie Comtet-Marre, Pierre Peyret, Danis Abrouk, Francisco J. Ruíz-Dueñas, Cyril Marchand, Mylène Hugoni, Patricia Luis, Tahar Mechichi, Éric Record
Software Mentions: 2
Published: over 3 years ago

10.3390/jof7070578

Fungal Endophytic Community and Diversity Associated with Desert Shrubs Driven by Plant Identity and Organ Differentiation in Extremely Arid Desert Ecosystem
Cited by: 19
Author(s): Yiling Zuo, Li Xia, Jingya Yang, Jiaqiang Liu, Lili Zhao, Xueli He
Software Mentions: 2
Published: over 3 years ago

10.1186/s42523-021-00119-y

Temporal and nutritional effects on the weaner pig ileal microbiota
Cited by: 2
Author(s): Jolinda Pollock, Laura Glendinning, L. A. Smith, Hamna Mohsin, David L. Gally, Michael R. Hutchings, J.G.M. Houdijk
Software Mentions: 2
Published: over 3 years ago

10.3390/jof7090751

Effect of a Wood-Based Carrier of Trichoderma atroviride SC1 on the Microorganisms of the Soil
Cited by: 4
Author(s): Hamza Chammem, Livio Antonielli, Andrea Nesler, Massimo Pindo, I. Pertot
Software Mentions: 2
Published: about 3 years ago

10.3390/jof7090775

Macrofungi Cultivation in Shady Forest Areas Significantly Increases Microbiome Diversity, Abundance and Functional Capacity in Soil Furrows
Cited by: 6
Author(s): Dong Liu, Yanliang Wang, Peng Zhang, Fuqiang Yu, Jesús Pérez‐Moreno
Software Mentions: 2
Published: about 3 years ago

10.7189/jogh-09-010431

Software Mentions: 2

10.1155/2020/6639118

Rhizobacteria Communities of Phytoremediation Plant Species in Petroleum Hydrocarbon Contaminated Soil of the Sudd Ecosystem, South Sudan
Cited by: 9
Author(s): J. A. Ruley, John Baptist Tumuhairwe, Alice Amoding, Ola Tveitereid Westengen, Hilde Vinje
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph16081375

Bioaerosols Play a Major Role in the Nasopharyngeal Microbiota Content in Agricultural Environment
Cited by: 25
Author(s): Hamza Mbareche, Marc Veillette, Jonathan Pilote, Valérie Létourneau, Caroline Duchaine
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph16132335

Major Differences in the Diversity of Mycobiomes Associated with Wheat Processing and Domestic Environments: Significant Findings from High-Throughput Sequencing of Fungal Barcode ITS1
Cited by: 5
Author(s): Erika Yashiro, Dessislava Savova-Bianchi, Hélène Niculita‐Hirzel
Software Mentions: 2
Published: over 5 years ago

10.3390/ijerph16214160

Indoor Microbiome and Antibiotic Resistance on Floor Surfaces: An Exploratory Study in Three Different Building Types
Cited by: 15
Author(s): Mridula Gupta, Seungjun Lee, Michael Bisesi, Jiyoung Lee
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-015-0145-y

Human milk microbiota profiles in relation to birthing method, gestation and infant gender
Cited by: 218
Author(s): Camilla Urbaniak, Michelle Angelini, Gregory B. Gloor, Gregor Reid
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40168-016-0172-3

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota
Cited by: 407
Author(s): Abigail Lauder, Aoife M. Roche, Scott Sherrill-Mix, Aubrey Bailey, Alice Laughlin, Kyle Bittinger, Rita Leite, Michal A. Elovitz, Samuel Parry, Frederic D. Bushman
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-017-0391-2

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality
Cited by: 164
Author(s): Ramona Marasco, Eleonora Rolli, Marco Fusi, Grégoire Michoud, Daniele Daffonchio
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-018-0486-4

Early-life skin microbiota in hospitalized preterm and full-term infants
Cited by: 55
Author(s): Noelle Younge, Félix Araújo-Pérez, Debra Brandon, Patrick C. Seed
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-016-0183-0

Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection
Cited by: 41
Author(s): Alison Morris, Joseph N. Paulson, Hisham Talukder, Laura Tipton, Heather M. Kling, Lijia Cui, Adam Fitch, Mihai Pop, Karen A. Norris, Elodie Ghedin
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-017-0242-1

New evidences on the altered gut microbiota in autism spectrum disorders
Cited by: 599
Author(s): Francesco Strati, Duccio Cavalieri, Davide Albanese, Claudio De Felice, Claudio Donati, Joussef Hayek, Olivier Jousson, Silvia Leoncini, Daniela Renzi, Antonino Calabrò, Carlotta De Filippo
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40168-017-0249-7

Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms
Cited by: 64
Author(s): Tobias Weil, Carlotta De Filippo, Davide Albanese, Claudio Donati, Massimo Pindo, Lorenzo Pavarini, Federico Carotenuto, Massimiliano Pasqui, Luisa Poto, Jacopo Gabrieli, Carlo Barbante, Birgit Sattler, Duccio Cavalieri, Franco Miglietta
Software Mentions: 2
Published: over 7 years ago

10.1186/s40168-017-0372-5

Characterization of the upper and lower respiratory tract microbiota in Piedmontese calves
Cited by: 47
Author(s): Isabella Nicola, Francesco Cerutti, Elena Grego, Iride Bertone, Paola Gianella, Antonio D’Angelo, Simone Peletto, Claudio Bellino
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-020-00930-w

Uncovering the genomic potential of the Amazon River microbiome to degrade rainforest organic matter
Cited by: 14
Author(s): Célio Dias Santos Júnior, Hugo Sarmento, Fernando Miranda, Flávio Henrique-Silva, Ramiro Logares
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-018-0608-z

Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children
Cited by: 121
Author(s): Zhong Huang, John Penders, Zhun Shi, Huahui Ren, Kaiye Cai, Chao Fang, Qiuxia Ding, Carel Thijs, Ellen E. Blaak, Coen D. A. Stehouwer, Xun Xu, Huanming Yang, Jian Wang, Jun Wang, Daisy Jonkers, Ad Masclee, Susanne Brix, Junhua Li, Ilja C. W. Arts, Karsten Kristiansen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40168-020-00843-8

Mechanistic insights into the attenuation of intestinal inflammation and modulation of the gut microbiome by krill oil using in vitro and in vivo models
Cited by: 61
Author(s): Fang Liu, Allen Smith, Gloria Solano‐Aguilar, Thomas T.Y. Wang, Quynhchi Pham, Ethiopia Beshah, Qingjuan Tang, Joseph F. Urban, Changhu Xue, Robert W. Li
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-020-00952-4

Modulating gut microbiota in a mouse model of Graves’ orbitopathy and its impact on induced disease
Cited by: 29
Author(s): Sajad Moshkelgosha, Hedda Luise Verhasselt, Giulia Masetti, Danila Covelli, Filippo Biscarini, Mareike Horstmann, Anke Daser, Astrid M. Westendorf, Christoph Jesenek, Svenja Philipp, Salvador Díaz‐Cano, J. Paul Banga, Daryn R. Michael, Sue Plummer, Julian R. Marchesi, Anja Eckstein, Marian Ludgate, Utta Berchner‐Pfannschmidt
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40168-019-0683-9

Alterations in the gut microbiome and metabolism with coronary artery disease severity
Cited by: 179
Author(s): Honghong Liu, Xi Chen, Xiaomin Hu, Haitao Niu, Ran Tian, Hui Wang, Haiyu Pang, Lingjuan Jiang, Bin Qiu, Xiuting Chen, Yang Zhang, Yinglong Ma, Si Tang, Hanyu Li, Siqin Feng, Shuyang Zhang, Chenhong Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-019-0772-9

The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities
Cited by: 36
Author(s): Jostein Gohli, Kari Oline Bøifot, Line Victoria Moen, Paulina Pastuszek, Gunnar Skogan, Klas I. Udekwu, Marius Dybwad
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-020-00897-8

Parallel and non-parallel changes of the gut microbiota during trophic diversification in repeated young adaptive radiations of sympatric cichlid fish
Cited by: 12
Author(s): Andreas Härer, Julián Torres‐Dowdall, Sina J. Rometsch, Elizabeth Yohannes, Gonzalo Machado‐Schiaffino, Axel Meyer
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-018-0578-1

Cow-to-mouse fecal transplantations suggest intestinal microbiome as one cause of mastitis
Cited by: 78
Author(s): Castello Ma, Zheng Sun, Benhua Zeng, Shi Huang, Jie Zhao, Yong Zhang, Xiaoquan Su, Jian Xu, Hong Wei, Heping Zhang
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-019-0731-5

Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome
Cited by: 42
Author(s): Pedro J. Cabello‐Yeves, Francisco Rodrı́guez-Valera
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-017-0359-2

Links of gut microbiota composition with alcohol dependence syndrome and alcoholic liver disease
Cited by: 259
Author(s): Veronika Dubinkina, Alexander V. Tyakht, Vera Odintsova, Konstantin Yarygin, Boris A. Kovarsky, Alexander V. Pavlenko, Dimitry D Ischenko, Anna Popenko, Dmitry Alexeev, Anastasiya Y. Taraskina, Р. Ф. Насырова, Evgeny Krupitsky, Nino V. Shalikiani, И. Г. Бакулин, П. Л. Щербаков, Liubov O. Skorodumova, Andrei K. Larin, Elena S. Kostryukova, Р. А. Абдулхаков, С. Р. Абдулхаков, Sergey Malanin, Р. К. Исмагилова, Tatiana V. Grigoryeva, Elena N. Ilina, Vadim M. Govorun
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-021-01060-7

Strain engraftment competition and functional augmentation in a multi-donor fecal microbiota transplantation trial for obesity
Cited by: 46
Author(s): Brooke C. Wilson, Tommi Vatanen, Thilini N. Jayasinghe, Karen S. W. Leong, José G. B. Derraik, Benjamin B. Albert, Valentina Chiavaroli, Darren Svirskis, Kathryn Beck, Cathryn A. Conlon, Yannan Jiang, William Schierding, David J. Holland, Wayne S. Cutfield, Justin M. O’Sullivan
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-021-01143-5

Response and oil degradation activities of a northeast Atlantic bacterial community to biogenic and synthetic surfactants
Cited by: 12
Author(s): Christina Nikolova, Umer Zeeshan Ijaz, Clayton R. Magill, Sara Kleindienst, Samantha B. Joye, Tony Gutiérrez
Software Mentions: 2
Published: about 3 years ago

10.1186/s40168-016-0211-0

Disruption of the microbiota across multiple body sites in critically ill children
Cited by: 79
Author(s): Matthew B. Rogers, Brian Firek, Min Shi, Andrew Yeh, Rachel Brower–Sinning, Victoria G. Aveson, Brittany L. Kohl, Anthony Fabio, Joseph A. Carcillo, Michael J. Morowitz
Software Mentions: 2
Published: about 8 years ago

10.1186/2049-2618-2-35

Intestinal anastomotic injury alters spatially defined microbiome composition and function
Cited by: 118
Author(s): Benjamin D. Shogan, Daniel P. Smith, Scott Christley, Jack A. Gilbert, Olga Zaborina, John C. Alverdy
Software Mentions: 2
Published: about 10 years ago

10.1186/s40168-020-00922-w

Genetic selection for growth drives differences in intestinal microbiota composition and parasite disease resistance in gilthead sea bream
Cited by: 39
Author(s): M. Carla Piazzon, Fernando Naya-Català, Erick Perera, Oswaldo Palenzuela, Ariadna Sitjà‐Bobadilla, Jaume Pérez‐Sánchez
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-020-0784-5

Dissecting the factors shaping fish skin microbiomes in a heterogeneous inland water system
Cited by: 40
Author(s): Yaron Krotman, Timur Yergaliyev, Rivka Alexander Shani, Yosef Avrahami, Amir Szitenberg
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40168-018-0510-8

The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism
Cited by: 146
Author(s): Sarah Just, Stanislas Mondot, Josef Ecker, Katrin Wegner, Eva Rath, Laura Gau, Theresa Streidl, Geneviève Héry-Arnaud, Sinah Schmidt, Till Robin Lesker, Valentin Bieth, Andreas Dunkel, Till Strowig, Thomas G. Hofmann, Dirk Haller, Gerhard Liebisch, Philippe Gérard, Sascha Rohn, Patricia Lepage, Thomas Clavel
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-018-0598-x

Long-term colonisation with donor bacteriophages following successful faecal microbial transplantation
Cited by: 105
Author(s): Lorraine A. Draper, Feargal J. Ryan, Muireann K. Smith, Jonna Jalanka, Eero Mattila, Perttu Arkkila, R. Paul Ross, Reetta Satokari, Colin Hill
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-017-0382-3

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels
Cited by: 123
Author(s): Tiantian Ren, Stan Boutin, Murray M. Humphries, Ben Dantzer, Jamieson C. Gorrell, David W. Coltman, Andrew G. McAdam, Martin Wu
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-020-00816-x

Gut microbiota from persons with attention-deficit/hyperactivity disorder affects the brain in mice
Cited by: 78
Author(s): Anouk C. Tengeler, Sarita Dam, Maximilian Wiesmann, Jilly Naaijen, Miranda Van Bodegom, Clara Belzer, Pieter J. Dederen, Viviènne Verweij, Barbara Franke, Tamás Kozicz, Alejandro Arias Vásquez, Amanda J. Kiliaan
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-017-0327-x

Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine
Cited by: 17
Author(s): Xuejian Xiong, Elise S. Bales, Diana Ir, Charles E. Robertson, James L. McManaman, Daniel N. Frank, John Parkinson
Software Mentions: 2
Published: about 7 years ago

10.3390/ijerph17197081

Assessing the Beneficial Effects of the Immunomodulatory Glycan LNFPIII on Gut Microbiota and Health in a Mouse Model of Gulf War Illness
Cited by: 11
Author(s): Ryan S. Mote, Jessica M. Carpenter, Rachel L. Dockman, Andrew J. Steinberger, Garret Suen, Thomas Norberg, Donald A. Harn, John J. Wagner, Nikolay M. Filipov
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-017-0329-8

Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata
Cited by: 75
Author(s): Koty Sharp, Zoe A. Pratte, Allison H. Kerwin, Randi D. Rotjan, Frank J. Stewart
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-018-0412-9

Individual and household attributes influence the dynamics of the personal skin microbiota and its association network
Cited by: 41
Author(s): Marcus H. Y. Leung, Xinzhao Tong, David E. Wilkins, Hedwig H. L. Cheung, Patrick K. H. Lee
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph17249157

The Response of Arbuscular Mycorrhizal Fungal Communities to the Soil Environment of Underground Mining Subsidence Area in Northwest China
Cited by: 3
Author(s): Hai Huang, Jing Guo, Yuxiu Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40168-018-0611-4

Signatures within the esophageal microbiome are associated with host genetics, age, and disease
Cited by: 92
Author(s): Nandan P. Deshpande, Stephen M. Riordan, Natalia Castaño‐Rodríguez, Marc R. Wilkins, Nadeem O. Kaakoush
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-019-0636-3

Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome
Cited by: 47
Author(s): Robert A. Quinn, Sandeep Adem, Robert H. Mills, William Comstock, Lindsay DeRight Goldasich, Gregory Humphrey, Alexander A. Aksenov, Alexei V. Melnik, Ricardo R. da Silva, Gail Ackermann, Nuno Bandeira, David J. Gonzalez, Doug Conrad, Anthony J. O’Donoghue, Rob Knight, Pieter C. Dorrestein
Software Mentions: 2
Published: almost 6 years ago

10.1186/s40168-016-0151-8

Composition and dynamics of the respiratory tract microbiome in intubated patients
Cited by: 129
Author(s): Brendan J Kelly, Ize Imai, Kyle Bittinger, Alice Laughlin, Barry D. Fuchs, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 2
Published: almost 9 years ago

10.1186/s42523-021-00086-4

Fish predation on corals promotes the dispersal of coral symbionts
Cited by: 22
Author(s): Carsten G. B. Grupstra, Kristen M. Rabbitt, Lauren I. Howe‐Kerr, Adrienne M. S. Correa
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-018-0453-0

A comparison of methods used to unveil the genetic and metabolic pool in the built environment
Cited by: 18
Author(s): C. Gómez-Silván, Marcus H. Y. Leung, Katherine Grue, Randeep Kaur, Xinzhao Tong, Patrick K. H. Lee, Gary L. Andersen
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-020-00899-6

Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria
Cited by: 60
Author(s): Bastian Seelbinder, Jiarui Chen, Sascha Brunke, Ruben Vazquez-Uribe, Rakesh Santhaman, Anne-Christin Meyer, Felipe Senne de Oliveira Lino, Ka-Fai Chan, Daniel Loos, Lejla Imamovic, Chi‐Ching Tsang, Rex Pui-kin Lam, Siddharth Sridhar, Kang Kang, Bernhard Hube, Patrick Chiu-Yat Woo, Morten Otto Alexander Sommer, Gianni Panagiotou
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-019-0699-1

Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle
Cited by: 189
Author(s): Fuyong Li, Changxi Li, Yanhong Chen, Junhong Liu, Chunyan Zhang, Barry Irving, Carolyn Fitzsimmons, Graham Plastow, Le Luo Guan
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-020-00036-6

Evaluation of fecal Lactobacillus populations in dogs with idiopathic epilepsy: a pilot study
Cited by: 10
Author(s): Karen R. Muñana, Megan E. Jacob, Benjamin J. Callahan
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-021-01028-7

Gut microbiota-derived inosine from dietary barley leaf supplementation attenuates colitis through PPARγ signaling activation
Cited by: 88
Author(s): Daotong Li, Yao Feng, Mi Tian, Junfu Ji, Xiaosong Hu, Fang Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-018-0490-8

Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner
Cited by: 141
Author(s): Sara Lundgren, Juliette C. Madan, Jennifer A. Emond, Hilary G. Morrison, Brock C. Christensen, Margaret R. Karagas, Anne G. Hoen
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-017-0270-x

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
Cited by: 75
Author(s): Sonny T. M. Lee, Stacy A. Kahn, Tom O. Delmont, Alon Shaiber, Özcan C. Esen, Nathaniel Hubert, Hilary G. Morrison, Dionysios A. Antonopoulos, David T. Rubin, A. Murat Eren
Software Mentions: 2
Published: over 7 years ago

10.1186/s40168-017-0265-7

The effects of inhaled aztreonam on the cystic fibrosis lung microbiome
Cited by: 51
Author(s): Alya Heirali, Matthew L. Workentine, Nicole Acosta, Ali Poonja, Douglas G. Storey, Ranjani Somayaji, Harvey Rabin, Fiona Whelan, Michael G. Surette, Michael D. Parkins
Software Mentions: 2
Published: over 7 years ago

10.1186/s40168-018-0575-4

Lack of detection of a human placenta microbiome in samples from preterm and term deliveries
Cited by: 198
Author(s): Jacob S. Leiby, Kevin McCormick, Scott Sherrill-Mix, Erik L. Clarke, Lyanna R. Kessler, Louis J. Taylor, Casey E. Hofstaedter, Aoife M. Roche, Lisa M. Mattei, Kyle Bittinger, Michal A. Elovitz, Rita Leite, Samuel Parry, Frederic D. Bushman
Software Mentions: 2
Published: about 6 years ago

10.1186/s42523-020-00030-y

Putative modulation of the gut microbiome by probiotics enhances preference for novelty in a preliminary double-blind placebo-controlled study in ferrets
Cited by: 5
Author(s): Supritha Dugyala, Travis Ptacek, Jeremy M. Simon, Yuhui Li, Flavio Fröhlich
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-018-0451-2

Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers
Cited by: 291
Author(s): Zhenwei Dai, Olabisi Oluwabukola Coker, Geicho Nakatsu, William Ka Kei Wu, Liuyang Zhao, Zigui Chen, Francis K.L. Chan, Karsten Kristiansen, Joseph J.Y. Sung, Sunny H. Wong, Jun Yu
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-018-0587-0

Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice
Cited by: 128
Author(s): Kanakaraju Kaliannan, Ruairi C. Robertson, Kiera Murphy, Catherine Stanton, Chao Kang, Bin Wang, Lei Hao, Atul K. Bhan, Jing Kang
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-017-0326-y

Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis
Cited by: 38
Author(s): Cornelia Gottschick, Zhi-Luo Deng, Marius Vital, Clarissa Masur, Christoph Abels, Dietmar H. Pieper, Manfred Rohde, Werner Mendling, Irene Wagner‐Döbler
Software Mentions: 2
Published: about 7 years ago

10.1002/mbo3.828

Experimental evaluation on the applicability of necrobiome analysis in forensic veterinary science
Cited by: 9
Author(s): Fabiola Tuccia, Emad Zurgani, Sara Bortolini, Stefano Vanin
Software Mentions: 2
Published: over 5 years ago

10.1002/mbo3.1141

Skin and stinger bacterial communities in two critically endangered rays from the South Atlantic in natural and aquarium settings
Cited by: 5
Author(s): Fernanda Gonçalves e Silva, Henrique F. Santos, D. L. Leite, Daniela Silva Lutfi, Marcelo Vianna, Alexandre Soares Rosado
Software Mentions: 2
Published: about 4 years ago

10.1002/mbo3.600

Effects of nutrient loading on sediment bacterial and pathogen communities within seagrass meadows
Cited by: 21
Author(s): Songlin Liu, Zhijian Jiang, Yiqin Deng, Yunchao Wu, Jingping Zhang, Changsui Zhao, Di Huang, Xiaoping Huang, Stacey M. Trevathan-Tackett
Software Mentions: 2
Published: over 6 years ago

10.1002/mbo3.645

Short‐term direct contact with soil and plant materials leads to an immediate increase in diversity of skin microbiota
Cited by: 59
Author(s): Mira Grönroos, Nan Hui, Olli H. Laitinen, Marja I. Roslund, Heli K. Vari, Heikki Hyöty, Riikka Puhakka, Aki Sinkkonen
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-020-00983-x

Toothbrush microbiomes feature a meeting ground for human oral and environmental microbiota
Cited by: 8
Author(s): Ryan A. Blaustein, Lisa Marie Michelitsch, A. Glawe, Hansung Lee, Stefanie Huttelmaier, Nancy Hellgeth, Sarah Ben Maamar, Erica M. Hartmann
Software Mentions: 2
Published: almost 4 years ago

10.1002/mbo3.939

An examination of data from the American Gut Project reveals that the dominance of the genus <i>Bifidobacterium</i> is associated with the diversity and robustness of the gut microbiota
Cited by: 22
Author(s): Yuqing Feng, Yugang Duan, Zhenjiang Xu, Na Lyu, Fei Liu, Shihao Liang, Baoli Zhu
Software Mentions: 2
Published: about 5 years ago

10.3390/ijerph18168254

Soy and Frequent Dairy Consumption with Subsequent Equol Production Reveals Decreased Gut Health in a Cohort of Healthy Puerto Rican Women
Cited by: 3
Author(s): Mercedes Lacourt-Ventura, Brayan Vilanova-Cuevas, Delmarie Rivera-Rodríguez, Raysa Rosario-Acevedo, Christine Miranda, Gerónimo Maldonado-Martínez, Johanna Maysonet, Darlene Vargas, Yelitza Ruiz, Robert Hunter-Mellado, Luis A. Cubano, Suranganie Dharmawardhane, Johanna W. Lampe, Abel Baerga‐Ortiz, Filipa Godoy-Vitorino, Michelle M. Martínez-Montemayor
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-020-00810-3

Lung function and microbiota diversity in cystic fibrosis
Cited by: 115
Author(s): Leah Cuthbertson, Alan W. Walker, Anna Oliver, Geraint B. Rogers, Damian W. Rivett, Thomas H. Hampton, Alix Ashare, J. Stuart Elborn, Anthony De Soyza, Mary Carroll, Lucas R. Hoffman, Clare Lanyon, Samuel M. Moskowitz, George A. O’Toole, Julian Parkhill, Paul J. Planet, Charlotte C. Tenebäck, Michael Tunney, Jonathan B. Zuckerman, Kenneth D. Bruce, Christopher J. van der Gast
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-017-0366-3

Normalization of the microbiota in patients after treatment for colonic lesions
Cited by: 53
Author(s): Marc A. Sze, Nielson T. Baxter, Mack T. Ruffin, Mary A.M. Rogers, Patrick D. Schloss
Software Mentions: 2
Published: about 7 years ago

10.1186/s40168-021-01118-6

Plant developmental stage drives the differentiation in ecological role of the maize microbiome
Cited by: 120
Author(s): Chao Xiong, Brajesh K. Singh, Ji‐Zheng He, Yong Han, Peipei Li, Li-Hua Wan, Guo-Zhong Meng, Si-Yi Liu, Juntao Wang, Chuanfa Wu, An‐Hui Ge, Limei Zhang
Software Mentions: 2
Published: over 3 years ago

10.1002/mbo3.522

Factors affecting the bacterial community composition and heterotrophic production of Columbia River estuarine turbidity maxima
Cited by: 14
Author(s): Lydie Herfort, Byron C. Crump, Caroline S. Fortunato, Lee Ann McCue, Victoria Campbell, Holly M. Simon, António M. Baptista, Peter Zuber
Software Mentions: 2
Published: over 7 years ago

10.1002/mbo3.1004

Changes in the community structure of the symbiotic microbes of wild amphibians from the eastern edge of the Tibetan Plateau
Cited by: 19
Author(s): Ximei Liang, Hua Chen, Mengjie Zhang, Wei Zhu, Qing Chang, Guoqing Lu, Youhua Chen, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: almost 5 years ago

10.1002/mbo3.1198

Thirdhand cigarette smoke leads to age‐dependent and persistent alterations in the cecal microbiome of mice
Cited by: 3
Author(s): Li He, Yanxia Zhou, Yuqing Zhang, Bo Hang, Hang Chang, Suzaynn F. Schick, S Celniker, Yankai Xia, Antoine M. Snijders, Jian‐Hua Mao
Software Mentions: 2
Published: over 3 years ago

10.1002/mbo3.1114

Associations between phenotypic characteristics and clinical parameters of broilers and intestinal microbial development throughout a production cycle: A field study
Cited by: 6
Author(s): Jannigje G. Kers, J. E. de Oliveira, E.A.J. Fischer, Monique H.G. Tersteeg-Zijderveld, Prokopis Konstanti, Jan Arend Stegeman, Hauke Smidt, Francisca C. Velkers
Software Mentions: 2
Published: about 4 years ago

10.1002/mbo3.955

The intestinal microbiota of lake anchovy varies according to sex, body size, and local habitat in Taihu Lake, China
Cited by: 8
Author(s): Min Jiang, Maowen Xu, Congping Ying, Denghua Yin, Pei Dai, Yanping Yang, Kun Ye, Kai Liu
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-021-01032-x

Important ecophysiological roles of non-dominant Actinobacteria in plant residue decomposition, especially in less fertile soils
Cited by: 62
Author(s): Yuanyuan Bao, Jan Dolfing, Zhiying Guo, Ruirui Chen, Meng Wu, Zhongpei Li, Xiangui Lin, Youzhi Feng
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-019-0726-2

The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities
Cited by: 49
Author(s): Xuanping Tan, Taejung Chung, Yi Chen, Dumitru Macarisin, Luke F. LaBorde, Jasna Kovač
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-021-01138-2

Disease-induced changes in plant microbiome assembly and functional adaptation
Cited by: 116
Author(s): Min Gao, Chao Xiong, Cheng Gao, Clement K. M. Tsui, Mengmeng Wang, Xin Zhou, Aimin Zhang, Lei Cai
Software Mentions: 2
Published: about 3 years ago

10.1186/s40168-018-0497-1

Network hubs in root-associated fungal metacommunities
Cited by: 94
Author(s): Hirokazu Toju, Akifumi S. Tanabe, Hirotoshi Sato
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-018-0416-5

Differential human gut microbiome assemblages during soil-transmitted helminth infections in Indonesia and Liberia
Cited by: 88
Author(s): Bruce A. Rosa, Taniawati Supali, Lincoln Gankpala, Yenny Djuardi, Erliyani Sartono, Yanjiao Zhou, Kerstin Fischer, John Martin, Rahul Tyagi, Fatorma K. Bolay, Peter U. Fischer, Maria Yazdanbakhsh, Makedonka Mitreva
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-020-00908-8

Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter
Cited by: 30
Author(s): Aaron McKenna, Umer Zeeshan Ijaz, Carmel Kelly, Mark Linton, William T. Sloan, Brian D. Green, Ursula Lavery, Nick Dorrell, Brendan W. Wren, Anne Richmond, Nicolae Corcionivoschi, Ozan Gundogdu
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-020-00913-x

Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status
Cited by: 57
Author(s): Jordi Mayneris‐Perxachs, María Arnoriaga-Rodríguez, D. Luque-Córdoba, Feliciano Priego‐Capote, Vicente Pérez‐Brocal, Andrés Moya, Aurelijus Burokas, Rafaël Maldonado, José Manuel Fernández-Real
Software Mentions: 2
Published: about 4 years ago

10.1002/mbo3.604

Dynamics of coral-associated microbiomes during a thermal bleaching event
Cited by: 32
Author(s): Wirulda Pootakham, Wuttichai Mhuantong, Lalita Putchim, Thippawan Yoocha, Chutima Sonthirod, Wasitthee Kongkachana, Duangjai Sangsrakru, Chaiwat Naktang, Nukoon Jomchai, Nalinee Thongtham, Sithichoke Tangphatsornruang
Software Mentions: 2
Published: over 6 years ago

10.1007/s00442-020-04668-y

Regulation of fatty acid composition related to ontogenetic changes and niche differentiation of a common aquatic consumer
Cited by: 17
Author(s): Fernando Chaguaceda, Peter Eklöv, Kristin Scharnweber
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-017-0252-z

Subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status
Cited by: 112
Author(s): Jôice Dias Corrêa, Débora Cerqueira Calderaro, Gilda Aparecida Ferreira, Santuza Maria Souza de Mendonça, Gabriel R. Fernandes, E. Xiao, Antônio Lúcio Teixeira, Eugene J. Leys, Dana T. Graves, Tarcı́lia Aparecida Silva
Software Mentions: 2
Published: over 7 years ago

10.1007/s00442-020-04746-1

Functional diversity of habitat formers declines scale-dependently across an environmental stress gradient
Cited by: 12
Author(s): Laura Cappelatti, Alizée R. L. Mauffrey, John N. Griffin
Software Mentions: 2
Published: about 4 years ago

10.1099/mgen.0.000485

Chronic cigarette smoke exposure and pneumococcal infection induce oropharyngeal microbiota dysbiosis and contribute to long-lasting lung damage in mice
Cited by: 6
Author(s): Markus Hilty, Tsering Wüthrich, Aurélie Godel, Roberto Adelfio, Suzanne Aebi, Sabrina Sofia Burgener, Brunhilde Illgen-Wilcke, Charaf Benarafa
Software Mentions: 2
Published: about 4 years ago

10.1264/jsme2.ME21012

Structural Comparison of Diplonemid Communities around the Izu Peninsula, Japan
Cited by: 1
Author(s): Akinori Yabuki, Masaru Kawato, Yuriko Nagano, Shinji Tsuchida, Takao Yoshida, Yoshihiro Fujiwara
Software Mentions: 2
Published: almost 4 years ago

10.1264/jsme2.ME18031

Comparing Two Common DNA Extraction Kits for the Characterization of Symbiotic Microbial Communities from Ascidian Tissue
Cited by: 7
Author(s): James S. Evans, Susanna López‐Legentil, Patrick M. Erwin
Software Mentions: 2
Published: almost 7 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292