10.3389/fmicb.2017.01844

The Microbiome of Seriola lalandi of Wild and Aquaculture Origin Reveals Differences in Composition and Potential Function
Cited by: 55
Author(s): C. Ramı́rez, Jaime Romero
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSystems.00020-18

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome
Cited by: 86
Author(s): Anupriya Tripathi, Alexey V. Melnik, Jin Xue, Orit Poulsen, Michael J. Meehan, Gregory Humphrey, Lingjing Jiang, Gail Ackermann, Daniel McDonald, Dan Zhou, Rob Knight, Pieter C. Dorrestein, Gabriel G. Haddad
Software Mentions: 2
Published: about 8 years ago

10.1186/s13568-018-0644-x

Disease outbreak accompanies the dispersive structure of shrimp gut bacterial community with a simple core microbiota
Cited by: 48
Author(s): Zhiyuan Yao, Kunjie Yang, Lei Huang, Xiaolin Huang, Linglin Qiuqian, Kai Wang, Demin Zhang
Software Mentions: 2
Published: about 8 years ago

10.1186/s12866-019-1690-5

Gut bacteria of weevils developing on plant roots under extreme desert conditions
Cited by: 12
Author(s): Fei Meng, Nitsan Bar‐Shmuel, R. Shavit, Adi Behar, Michal Segoli
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-020-02069-y

Leptospira in river and soil in a highly endemic area of Ecuador
Cited by: 13
Author(s): Erin B. Miller, Verónica Barragán, J. Chiriboga, Chad Allen Weddell, Ligia Luna, Dulce Jiménez, John Aleman, Joseph R. Mihaljevic, Sonora Olivas, Jane C. Marks, Ricardo Izurieta, Nathan C. Nieto, Paul Keim, Gabriel Trueba, J. Gregory Caporaso, Talima Pearson
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.621879

Changes in Gastric Corpus Microbiota With Age and After Helicobacter pylori Eradication: A Long-Term Follow-Up Study
Cited by: 13
Author(s): Cheol Min Shin, Nayoung Kim, Ji Hyun Park, Dong Hoon Lee
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.02515

Chinese Black Truffle-Associated Bacterial Communities of Tuber indicum From Different Geographical Regions With Nitrogen Fixing Bioactivity
Cited by: 27
Author(s): Carlos Juan, Jiamei Li, Yang-Jing Tang, Yong-Mei Xing, Panzhe Qiao, Yang Li, Pei‐Gui Liu, Shun‐Xing Guo
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2020.602010

Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea
Cited by: 7
Author(s): Ying Su, Yunxia Yang, Xiaoyu Zhu, Xiao-Hua Zhang, Min Yu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.00559

Host and Environmental Specificity in Bacterial Communities Associated to Two Highly Invasive Marine Species (Genus Asparagopsis)
Cited by: 49
Author(s): Tânia Aires, Ester Á. Serrão, Aschwin H. Engelen
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-019-1546-z

rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
Cited by: 61
Author(s): Jean-Claude Ogier, Sylvie Pagès, Maxime Galan, Matthieu Barret, Sophie Gaudriault
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2018.00357

Watershed-Induced Limnological and Microbial Status in Two Oligotrophic Andean Lakes Exposed to the Same Climatic Scenario
Cited by: 8
Author(s): Alex Echeverría-Vega, Guillermo Chong, Antonio E. Serrano, Mariela Guajardo, Olga Encalada, Vı́ctor Parro, Yolanda Blanco, Luis A. Rivas, Kevin C. Rose, Mercedes Moreno‐Paz, José A. Luque, Nathalie A. Cabrol, Cecilia Demergasso
Software Mentions: 2
Published: over 8 years ago

10.1186/s13568-020-01069-5

Microbial composition of sweetness-enhanced yoghurt during fermentation and storage
Cited by: 2
Author(s): Giuseppina Luzzi, Erik Brinks, Jan Fritsche, Charles M. A. P. Franz
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-020-02021-0

Gut microbiota: effect of pubertal status
Cited by: 34
Author(s): Xin Yuan, Ruimin Chen, Ying Zhang, Xiaoqin Lin, Xiaohong Yang
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00113-18

Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge
Cited by: 13
Author(s): Sean Ting Shyang Wei, Yu Wei Wu, Tzong‐Huei Lee, Yi Huang, Cheng Yu Yang, Yi Lung Chen, Yin-Ru Chiang
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2017.00664

Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors
Cited by: 33
Author(s): Stephanie Connelly, Seung Gu Shin, Robert J. Dillon, Umer Zeeshan Ijaz, Christopher Quince, William T. Sloan, Gavin Collins
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-020-01839-y

Elimination of “kitome” and “splashome” contamination results in lack of detection of a unique placental microbiome
Cited by: 63
Author(s): Isoken N. Olomu, Luís Carlos Peña-Cortés, Robert A. Long, Arpita Vyas, Olha Krichevskiy, Ryan Luellwitz, Pallavi Singh, Martha H. Mulks
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2017.02616

Temporal and Spatial Impact of Human Cadaver Decomposition on Soil Bacterial and Arthropod Community Structure and Function
Cited by: 48
Author(s): Baneshwar Singh, Kevan J. Minick, Michael S. Strickland, Kyle Wickings, Tawni L. Crippen, Aaron M. Tarone, M. Eric Benbow, Ness Sufrin, Jeffery K. Tomberlin, Jennifer L. Pechal
Software Mentions: 2
Published: over 8 years ago

10.1186/s12866-020-1717-y

Diversity and geographic distribution of soil streptomycetes with antagonistic potential against actinomycetoma-causing Streptomyces sudanensis in Sudan and South Sudan
Cited by: 9
Author(s): Mohamed E. Hamid, Thomas Reitz, Martin R.P. Joseph, Kerstin Hommel, Adil Mahgoub, Mogahid M. Elhassan, François Buscot, Mika Tarkka
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.02147

Camelina Seed Supplementation at Two Dietary Fat Levels Change Ruminal Bacterial Community Composition in a Dual-Flow Continuous Culture System
Cited by: 15
Author(s): Xiaojing Dai, Paul J. Weimer, Kimberly A. Dill‐McFarland, V.L.N. Brandao, Garret Suen, A.P. Faciola
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.01093

Fecal Microbial Communities in a Large Representative Cohort of California Dairy Cows
Cited by: 51
Author(s): Jill V. Hagey, Srijak Bhatnagar, J.M. Heguy, Betsy M. Karle, Patricia L. Price, Donald L. Meyer, Elizabeth A. Maga
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.01385

Bacteria Associated to Plants Naturally Selected in a Historical PCB Polluted Soil Show Potential to Sustain Natural Attenuation
Cited by: 23
Author(s): Lorenzo Vergani, Francesca Mapelli, Ramona Marasco, Elena Crotti, Marco Fusi, Antonio Di Guardo, Stefano Armiraglio, Daniele Daffonchio, Sara Borin
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2015.00223

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities
Cited by: 56
Author(s): Markus V. Lindh, Daniela Figueroa, Johanna Sjöstedt, Federico Baltar, Daniel Lundin, Agneta Andersson, Catherine Legrand, Jarone Pinhassi
Software Mentions: 2
Published: over 11 years ago

10.1186/s12866-018-1169-9

Modulations in the offspring gut microbiome are refractory to postnatal synbiotic supplementation among juvenile primates
Cited by: 19
Author(s): Ryan M. Pace, Amanda Prince, Jun Ma, Benjamin D. Belfort, Alexia S. Harvey, Min Hu, Karalee Baquero, Peter E. Blundell, Diana Takahashi, Tyler A. Dean, Paul Kievit, Elinor L. Sullivan, Jacob E. Friedman, Kevin L. Grove, Kjersti M. Aagaard
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms21217863

Impact of a Model Used to Simulate Chronic Socio-Environmental Stressors Encountered during Spaceflight on Murine Intestinal Microbiota
Cited by: 8
Author(s): Corentine Alauzet, Lisiane Cunat, Maxime Wack, Laurence Lanfumey, Christine Legrand-Frossi, Alain Lozniewski, Nelly Agrinier, Catherine Cailliez‐Grimal, Jean-Pol Frippiat
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.00982

Green Infrastructure Design Influences Communities of Urban Soil Bacteria
Cited by: 34
Author(s): Jessica Joyner, Jordan Kerwin, Maha Deeb, George Lozefski, Bharath Prithiviraj, Anna Paltseva, John L. McLaughlin, Peter M. Groffman, Zhongqi Cheng, Theodore R. Muth
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.01414

Ubiquitous Presence and Novel Diversity of Anaerobic Alkane Degraders in Cold Marine Sediments
Cited by: 30
Author(s): Antje Gittel, Johanna Donhauser, Hans Røy, Peter R. Girguis, Bo Barker Jørgensen, Kasper Urup Kjeldsen
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-019-1399-5

Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery
Cited by: 34
Author(s): Felix C. F. Schmitt, Thorsten Brenner, Florian Uhle, Svenja Loesch, Thilo Hackert, Alexis Ulrich, Stefan Hofer, Alexander H. Dalpke, Markus Weigand, Sébastien Boutin
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.703711

Multi-Omic Analysis of Symbiotic Bacteria Associated With Aedes aegypti Breeding Sites
Cited by: 8
Author(s): Katherine D. Mosquera, Luís Eduardo Martinez Villegas, Sacha J. Pidot, Chinhda Sharif, Sven Klimpel, Timothy P. Stinear, Luciano Andrade Moreira, Nicholas J. Tobias, Marcelo G. Lorenzo
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21249509

Comprehensive Analysis Reveals Novel Interactions between Circulating MicroRNAs and Gut Microbiota Composition in Human Obesity
Cited by: 20
Author(s): Taís Silveira Assmann, Amelia Marti, José Ignacio Riezu-Boj, Fermı́n I. Milagro, J. Alfredo Martínéz
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.626421

The Composition of the Microbiota in the Full-Term Fetal Gut and Amniotic Fluid: A Bovine Cesarean Section Study
Cited by: 22
Author(s): Aleksi Husso, Leen Lietaer, Tiina Pessa‐Morikawa, Thomas Grönthal, Jan Govaere, Ann Van Soom, Antti Iivanainen, G. Opsomer, Mikael Niku
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21249735

Gastric Adenocarcinomas and Signet-Ring Cell Carcinoma: Unraveling Gastric Cancer Complexity through Microbiome Analysis—Deepening Heterogeneity for a Personalized Therapy
Cited by: 23
Author(s): Gloria Ravegnini, Bruno Fosso, Viola Di Saverio, Giulia Sammarini, Federica Zanotti, Giulio Rossi, M. Ricci, Federica D’Amico, Giorgia Valori, Antonella Ioli, Silvia Turroni, Patrizia Brigidi, Patrizia Hrelia, Sabrina Angelini
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.628108

Elevated Atmospheric CO2 and Nitrogen Fertilization Affect the Abundance and Community Structure of Rice Root-Associated Nitrogen-Fixing Bacteria
Cited by: 8
Author(s): Jumei Liu, Jingjing Han, Chunmao Zhu, Weiwei Cao, Ying Luo, Meng Zhang, Shaohua Zhang, Zhongjun Jia, Ruihong Yu, Ji Zhao, Zhihua Bao
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.01200

Thermoplasmatales and Methanogens: Potential Association with the Crenarchaeol Production in Chinese Soils
Cited by: 1
Author(s): Fuyan Li, Fengfeng Zheng, Yongli Wang, Weiguo Liu, Chuanlun L. Zhang
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2020.587074

Soil Microbial Communities Associated With Biodegradable Plastic Mulch Films
Cited by: 50
Author(s): Sreejata Bandopadhyay, J. Gonzalez, Kelsey B. Henderson, Marife B. Anunciado, Douglas G. Hayes, Jennifer M. DeBruyn
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.02682

Alterations of Gut Microbiota in Cholestatic Infants and Their Correlation With Hepatic Function
Cited by: 28
Author(s): Gregory Yin Ming Cheng, Yinhu Li, Peipei Wang, Yingchao Li, Chuangzhao Qiu, Muxia Li, Daxi Wang, Ruizhi Zhao, Dongfang Li, Ye Wang, Shuai Cheng Li, Wenkui Dai, Lin Zhang
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2015.00379

Cropping systems modulate the rate and magnitude of soil microbial autotrophic CO2 fixation in soil
Cited by: 39
Author(s): Xin Wu, Tida Ge, Wei Wang, Yuan Huang, Carl‐Eric Wegner, Zhenke Zhu, Andrew S. Whiteley, Jinshui Wu
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2018.03065

Small-Scale Soil Microbial Community Heterogeneity Linked to Landform Historical Events on King George Island, Maritime Antarctica
Cited by: 9
Author(s): Y Zhang, Lu Lu, Xulu Chang, Fan Jiang, Xiang-Dong Gao, Yi‐Feng Yao, Cheng‐Sen Li, Sanjie Cao, Qiming Zhou, Fang Peng
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.646302

Mycobiomes of Young Beech Trees Are Distinguished by Organ Rather Than by Habitat, and Community Analyses Suggest Competitive Interactions Among Twig Fungi
Cited by: 5
Author(s): Abu Bakar Siddique, Paolo Biella, Martin Unterseher, Benedicte Riber Albrectsen
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00495

Host Age Affects the Development of Southern Catfish Gut Bacterial Community Divergent From That in the Food and Rearing Water
Cited by: 47
Author(s): Zhimin Zhang, Dapeng Li, Mohamed M. Refaey, Weigang Xu, Rong Tang, Li Li
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.03275

The Influence of Bt Maize Cultivation on Communities of Arbuscular Mycorrhizal Fungi Revealed by MiSeq Sequencing
Cited by: 15
Author(s): Huilan Zeng, Wang Zhong, Fengxiao Tan, Yinghua Shu, Ying Feng, Jianwu Wang
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-017-1101-8

A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome
Cited by: 173
Author(s): Imane Allali, Jason W. Arnold, Jeffrey Roach, María Belén Cadenas, Natasha Butz, Hosni M. Hassan, Matthew D. Koci, Anne Ballou, Mary Mendoza, Rizwana Ali, M. Andrea Azcárate-Peril
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2020.02073

Characterization of the Belowground Microbial Community in a Poplar-Phytoremediation Strategy of a Multi-Contaminated Soil
Cited by: 15
Author(s): Anna Barra Caracciolo, Paola Grenni, Gian Luigi Garbini, Ludovica Rolando, Claudia Campanale, Giorgia Aimola, Manuel Fernández‐López, Antonio José Fernández-González, Pablo J. Villadas, Valeria Ancona
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.618032

Comparison of Two Sampling Techniques for Evaluating Ruminal Fermentation and Microbiota in the Planktonic Phase of Rumen Digesta in Dairy Cows
Cited by: 28
Author(s): Camila Flávia de Assis Lage, S.E. Räisänen, A. Melgar, K. Nedelkov, Xianjiang Chen, J. Oh, M. E. Fetter, Nagaraju Indugu, Joseph S. Bender, Bonnie Vecchiarelli, Meagan L. Hennessy, Dipti Pitta, A.N. Hristov
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-017-1098-z

Comparison of rumen bacterial communities in dairy herds of different production
Cited by: 50
Author(s): Nagaraju Indugu, Bonnie Vecchiarelli, Linda D. Baker, James D. Ferguson, Jairam Vanamala, Dipti Pitta
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2020.01424

Composition, Structure, and PGPR Traits of the Rhizospheric Bacterial Communities Associated With Wild and Cultivated Echinocactus platyacanthus and Neobuxbaumia polylopha
Cited by: 8
Author(s): María Eugenia de la Torre-Hernández, Leilani I. Salinas-Virgen, José Félix Aguirre-Garrido, Antonio J. Fernández‐González, Francisco Martı́nez-Abarca, Daniel Montiel-Lugo, Hugo Ramírez-Saad
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.705001

Biogeographical Regionalization of Wine Yeast Communities in Greece and Environmental Drivers of Species Distribution at a Local Scale
Cited by: 14
Author(s): Ioanna Chalvantzi, Georgios Banilas, Chrysoula C. Tassou, Aspasia Nisiotou
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.01607

Vineyard Soil Microbiome Composition Related to Rotundone Concentration in Australian Cool Climate ‘Peppery’ Shiraz Grapes
Cited by: 23
Author(s): Vadakattu V. S. R. Gupta, R. G. V. Bramley, Paul Greenfield, Julian Yu, Markus Herderich
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2021.631445

Assessing the Diversity and Biomedical Potential of Microbes Associated With the Neptune’s Cup Sponge, Cliona patera
Cited by: 2
Author(s): Xin Yi Ho, Nursheena Parveen Katermeran, Lindsey K. Deignan, Ma Yadanar Phyo, Ji Fa Marshall Ong, Jun Xian Goh, Juat Ying Ng, Karenne Tun, Lik Tong Tan
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.01024

Characterization of Bacterial and Fungal Assemblages From Historically Contaminated Metalliferous Soils Using Metagenomics Coupled With Diffusion Chambers and Microbial Traps
Cited by: 14
Author(s): Ashish Pathak, Rajneesh Jaswal, Xiaoyu Xu, John R. White, Bobby Edwards, Jaden Hunt, Scott C. Brooks, Rajesh Rathore, Meenakshi Agarwal, Ashvini Chauhan
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2021.621126

Livestock Manure Type Affects Microbial Community Composition and Assembly During Composting
Cited by: 43
Author(s): Jinxin Wan, Xiaofang Wang, Tianjie Yang, Samiran Banerjee, Ville‐Petri Friman, Xinlan Mei, Yangchun Xu, Qirong Shen
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22041649

Gut Microbiota Profile in Children with IgE-Mediated Cow’s Milk Allergy and Cow’s Milk Sensitization and Probiotic Intestinal Persistence Evaluation
Cited by: 10
Author(s): Maurizio Mennini, Sofia Reddel, Federica Del Chierico, Simone Gardini, Andrea Quagliariello, Pamela Vernocchi, Rocco Valluzzi, Vincenzo Fierro, Carla Riccardi, Tania Napolitano, Alessandro Fiocchi, Lorenza Putignani
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.571009

Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning
Cited by: 8
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.02479

Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test
Cited by: 54
Author(s): Yunshi Li, Xiukun Wu, Tuo Chen, Wanfu Wang, Guangxiu Lu, Wei Zhang, Shi-Weng Li, Minghao Wang, Changming Zhao, Huaizhe Zhou, Gaosen Zhang
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2021.623739

Probiotics Bacillus licheniformis Improves Intestinal Health of Subclinical Necrotic Enteritis-Challenged Broilers
Cited by: 29
Author(s): Liugang Kan, Fangshen Guo, Yan Liu, Van Hieu Pham, Yuming Guo, Weihong Zhong
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.00792

Differing Complex Microbiota Alter Disease Severity of the IL-10−/− Mouse Model of Inflammatory Bowel Disease
Cited by: 39
Author(s): Marcia L. Hart, Aaron C. Ericsson, Craig L. Franklin
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-018-1257-x

A metagenome-wide association study of gut microbiota in asthma in UK adults
Cited by: 71
Author(s): Qi Wang, Fĕi Li, Bishan Liang, Yuhu Liang, Sijie Chen, Xiao‐Dong Mo, Yanmei Ju, Hui Zhao, Huijue Jia, Timothy D. Spector, Hailiang Xie, Ruijin Guo
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2016.01485

Persistent Infection by Wolbachia wAlbB Has No Effect on Composition of the Gut Microbiota in Adult Female Anopheles stephensi
Cited by: 21
Author(s): Shicheng Chen, Jiangchao Zhao, Deeksha Joshi, Zhiyong Xi, Beth C. Norman, Edward D. Walker
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12881-020-01115-w

Associations of NOD2 polymorphisms with Erysipelotrichaceae in stool of in healthy first degree relatives of Crohn’s disease subjects
Cited by: 10
Author(s): Williams Turpin, Larbi Bedrani, Osvaldo Espin‐Garcia, Wei Xu, Mark S. Silverberg, Michelle I. Smith, Juan A. Raygoza Garay, Sun-Ho Lee, David S. Guttman, Anne M. Griffiths, Paul Martin, Remo Panaccione, Hien Q. Huynh, Hillary Steinhart, Guy Aumais, Levinus A. Dieleman, Dan Turner, Andrew D. Paterson, Kenneth Croitoru
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.01775

Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States
Cited by: 33
Author(s): Rachel Mackelprang, Alyssa Grube, Regina Lamendella, Ederson da Conceição Jesus, Alex Copeland, Chao Liang, Randall D. Jackson, Charles W. Rice, Stefanie Kapucija, Bayan Parsa, Susannah G. Tringe, James M. Tiedje, Janet Jansson
Software Mentions: 2
Published: about 8 years ago

10.1186/s12916-021-01991-w

Gestational diabetes mellitus is associated with the neonatal gut microbiota and metabolome
Cited by: 32
Author(s): Ting Chen, Yufeng Qin, Minjian Chen, Yuqing Zhang, Xu Wang, Tianyu Dong, Guanglin Chen, Xian Sun, Ting Lu, Richard Allen White, Ye Peng, Hein Min Tun, Yankai Xia
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00141

Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum
Cited by: 19
Author(s): Maíra de Freitas Pereira, Claire Veneault‐Fourrey, Patrice Vion, Frédéric Guinet, Emmanuelle Morin, Kerrie Barry, Anna Lipzen, Vasanth Singan, Stephanie Pfister, Hyunsoo Na, Megan Kennedy, Simon Egli, Igor V. Grigoriev, Francis Martin, Annegret Kohler, Martina Peter
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.00737

Circadian Disruption Changes Gut Microbiome Taxa and Functional Gene Composition
Cited by: 134
Author(s): Jessica A. Deaver, Sung Yong Eum, Michał Toborek
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.01667

Diversity and Ice Nucleation Activity of Microorganisms Collected With a Small Unmanned Aircraft System (sUAS) in France and the United States
Cited by: 18
Author(s): Celía Jímenez-Sánchez, Regina Hanlon, Ken Aho, Craig Powers, Cindy E. Morris, David G. Schmale
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms22073343

Lantibiotics Produced by Oral Inhabitants as a Trigger for Dysbiosis of Human Intestinal Microbiota
Cited by: 5
Author(s): Hideo Yonezawa, Mizuho Motegi, Atsushi Oishi, Fuhito Hojo, Seiya Higashi, Eriko Nozaki, Koichiro Oka, Motomichi Takahashi, Takako Osaki, Shigeru Kamiya
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.676610

Native AMF Communities in an Italian Vineyard at Two Different Phenological Stages of Vitis vinifera
Cited by: 2
Author(s): Patrizia Cesaro, Nadia Massa, Elisa Bona, Giorgia Novello, Valeria Todeschini, Lara Boatti, Flavio Mignone, Elisa Gamalero, Graziella Berta, Graziano Lingua
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.00876

The Invasive Brazilian Pepper Tree (Schinus terebinthifolius) Is Colonized by a Root Microbiome Enriched With Alphaproteobacteria and Unclassified Spartobacteria
Cited by: 17
Author(s): Karim Dawkins, Nwadiuto Esiobu
Software Mentions: 2
Published: over 8 years ago

10.1186/s12879-020-05427-3

Altered respiratory microbiota composition and functionality associated with asthma early in life
Cited by: 11
Author(s): Mohammad Tahseen Al Bataineh, Rifat Hamoudi, Nihar Ranjan Dash, Rakhee K. Ramakrishnan, Mohamad A. Almasalmeh, Hanan Abdulgader Sharif, Mohamed S. Al-Hajjaj, Qutayba Hamid
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.00836

Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity
Cited by: 53
Author(s): Mari Pent, Kadri Põldmaa, Mohammad Bahram
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2017.02478

Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities
Cited by: 25
Author(s): Eria A. Rebollar, Edson Sandoval‐Castellanos, Kyria Roessler, Brandon S. Gaut, Luis David Alcaraz, Mariana Benítez, Ana E. Escalante
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22179626

Increase in Akkermansiaceae in Gut Microbiota of Prostate Cancer-Bearing Mice
Cited by: 12
Author(s): Pin-Yu Huang, Yu Yang, Chun I. Wang, Pei Wen Hsiao, Hung‐Ting Chiang, Ting-Wen Chen
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.596002

Alteration of Gut Microbiota After Antibiotic Exposure in Finishing Swine
Cited by: 19
Author(s): Hee Eun Jo, Min‐Sung Kwon, Tae Woong Whon, Doo Wan Kim, Misun Yun, Jieun Lee, Minkyung Shin, Sung-Hak Kim, Hak-Jong Choi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-4215-3

IL-17 signalling restructures the nasal microbiome and drives dynamic changes following Streptococcus pneumoniae colonization
Cited by: 12
Author(s): Neil D. Ritchie, Umer Zeeshan Ijaz, Tom Evans
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2021.653896

Soil Fungal Community Structure in Boreal Pine Forests: From Southern to Subarctic Areas of Finland
Cited by: 14
Author(s): Zhao‐lei Qu, Minna Santalahti, Egle Köster, Frank Berninger, Jukka Pumpanen, Jussi Heinonsalo, Hui Sun
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.671699

The Effect of Radiation on the Gut Bacteriome of Aedes albopictus
Cited by: 1
Author(s): Dongjing Zhang, Shi Chen, Adly M. M. Abd-Alla, Kostas Bourtzis
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2014.00096

Effects of different compost amendments on the abundance and composition of alkB harboring bacterial communities in a soil under industrial use contaminated with hydrocarbons
Cited by: 30
Author(s): Stefanie Wallisch, T. Gril, Dong Xia, Gerd Welzl, Christian Bruns, Ester Heath, Marion Engel, M. Suhadolc, Michael Schloter
Software Mentions: 2
Published: over 12 years ago

10.3934/microbiol.2018.3.469

Differences in structure of northern Australian hypolithic communities according to location, rock type, and gross morphology
Cited by: 1
Author(s): Susannah P. Guenther, Karen S. Gibb, Alea Rose, Mirjam Kaestli, Keith A. Christian
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.01350

Deciphering Microbiome Related to Rusty Roots of Panax ginseng and Evaluation of Antagonists Against Pathogenic Ilyonectria
Cited by: 32
Author(s): Defei Liu, Huanjun Sun, Hongwu Ma
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-019-5813-z

Mapping gastrointestinal gene expression patterns in wild primates and humans via fecal RNA-seq
Cited by: 8
Author(s): Ashok Sharma, Barbora Pafčo, Klára Vlčková, Barbora Červená, Jakub Kreisinger, Samuel Davison, Karen Beeri, Terence Fuh, Steven R. Leigh, Michael B. Burns, Ran Blekhman, Klára J. Petrželková, Andrés Gómez
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.594617

Selective Bacterial Colonization of the Murine Larynx in a Gnotobiotic Model
Cited by: 3
Author(s): Ran An, Madhu Gowda, Federico E. Rey, Susan L. Thibeault
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.537783

Effects of Sulfamethoxazole on the Microbial Community Dynamics During the Anaerobic Digestion Process
Cited by: 15
Author(s): Valentina Mazzurco Miritana, Giulia Massini, Andrea Visca, Paola Grenni, Luisa Patrolecco, Francesca Spataro, Jasmin Rauseo, Gian Luigi Garbini, Antonella Signorini, Sílvia Rosa, Anna Barra Caracciolo
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12863-020-00946-z

Genetic structure and symbiotic profile of worldwide natural populations of the Mediterranean fruit fly, Ceratitis capitata
Cited by: 13
Author(s): Katerina Nikolouli, Antonios A. Augustinos, Panagiota Stathopoulou, Elias Asimakis, Anastassios C. Mintzas, Kostas Bourtzis, George Tsiamis
Software Mentions: 2
Published: over 5 years ago

10.1186/s12876-018-0896-6

Evaluating gut microbiota profiles from archived fecal samples
Cited by: 20
Author(s): Trine B. Rounge, Roger Meisal, Jan Inge Nordby, Ole Herman Ambur, Thomas de Lange, Geir Hoff
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12862-020-01727-z

You don’t have the guts: a diverse set of fungi survive passage through Macrotermes bellicosus termite guts
Cited by: 6
Author(s): Nick Bos, Leandro Guimarães, Romen Palenzuela, Justinn Renelies‐Hamilton, Lorrie Maccario, Simon Kolotchèlèma Silué, N’golo Abdoulaye Koné, Michael Poulsen
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms221910871

Characterization of the Human Eccrine Sweat Proteome—A Focus on the Biological Variability of Individual Sweat Protein Profiles
Cited by: 7
Author(s): Bastien Burat, A. Reynaerts, Dominique Baiwir, Maximilien Fléron, Gauthier Eppe, Teresinha Leal, Gabriel Mazzucchelli
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12862-017-0908-0

Low genetic but high morphological variation over more than 1000 km coastline refutes omnipresence of cryptic diversity in marine nematodes
Cited by: 21
Author(s): Daniel Oliveira, Wilfrida Decraemer, Tom Moens, Giovanni dos Santos, Sofie Derycke
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.02095

Metagenomics Reveal Correlations Between Microbial Organisms in Soils and the Health of Populus euphratica
Cited by: 4
Author(s): Yu Tuo, Zhibao Dong, Xiping Wang, Beibei Gao, Chunming Zhu, Fei Tuo
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12862-019-1442-z

Genetic and morphological divergence at a biogeographic break in the beach-dwelling brooder Excirolana hirsuticauda Menzies (Crustacea, Peracarida)
Cited by: 15
Author(s): Pilar A. Haye, Nicolás I. Segovia, Andrea I. Varela, Rodrigo Rojas, Marcelo M. Rivadeneira, Martín Thiel
Software Mentions: 2
Published: about 7 years ago

10.1186/s12974-021-02122-1

Neuroprotective effect of mitochondrial translocator protein ligand in a mouse model of tauopathy
Cited by: 21
Author(s): Lauren H. Fairley, Naruhiko Sahara, Ichio Aoki, Bin Ji, Tetsuya Suhara, Makoto Higuchi, Anna M. Barron
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00170

Community Composition of Nitrous Oxide-Related Genes in Salt Marsh Sediments Exposed to Nitrogen Enrichment
Cited by: 20
Author(s): John H. Angell, Xuefeng Peng, Qixing Ji, Ian Craick, Amal Jayakumar, Patrick J. Kearns, Bess B. Ward, Jennifer L. Bowen
Software Mentions: 2
Published: over 8 years ago

10.1093/jn/nxz298

Provision of Lipid-Based Nutrient Supplements to Mothers During Pregnancy and 6 Months Postpartum and to Their Infants from 6 to 18 Months Promotes Infant Gut Microbiota Diversity at 18 Months of Age but Not Microbiota Maturation in a Rural Malawian Setting: Secondary Outcomes of a Randomized Trial
Cited by: 19
Author(s): Arox W Kamng’ona, R. T. Young, Charles D. Arnold, Noel Patson, Josh M Jorgensen, Emma Kortekangas, David Chaima, Chikondi Malamba, Ulla Ashorn, Yin Bun Cheung, Per Ashorn, Kenneth Maleta, Kathryn G. Dewey
Software Mentions: 2
Published: over 6 years ago

10.1186/s12898-015-0036-x

Nectar sugars and bird visitation define a floral niche for basidiomycetous yeast on the Canary Islands
Cited by: 50
Author(s): Moritz Mittelbach, Andrey Yurkov, Daniele Nocentini, Massimo Nepi, Maximilian Weigend, Dominik Begerow
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2020.569512

Plant Growth Promoting Rhizobacteria Alleviate Aluminum Toxicity and Ginger Bacterial Wilt in Acidic Continuous Cropping Soil
Cited by: 12
Author(s): Shuting Zhang, Qipeng Jiang, Xiaojiao Liu, Liehua Liu, Wei Ding
Software Mentions: 2
Published: over 5 years ago

10.1186/s12898-019-0268-2

Shell resource partitioning as a mechanism of coexistence in two co-occurring terrestrial hermit crab species
Cited by: 3
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.633535

Do Aerial Nitrogen Depositions Affect Fungal and Bacterial Communities of Oak Leaves?
Cited by: 0
Author(s): Luigimaria Borruso, Aïda Bani, Silvia Pioli, Maurizio Ventura, Pietro Panzacchi, Livio Antonielli, Francesco Giammarchi, Andrea Polo, Giustino Tonon, Lorenzo Brusetti
Software Mentions: 2
Published: over 5 years ago

10.1186/s12898-018-0164-1

Interference competition as a key determinant for spatial distribution of mangrove crabs
Cited by: 19
Author(s): Stefano Cannicci, Marco Fusi, Filippo Cimò, Farid Dahdouh‐Guebas, Sara Fratini
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2016.01206

Rumen Bacterial Community Composition in Holstein and Jersey Cows Is Different under Same Dietary Condition and Is Not Affected by Sampling Method
Cited by: 123
Author(s): Henry A. Paz, Christopher L. Anderson, Makala J. Muller, P.J. Kononoff, Samodha C. Fernando
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2018.00433

Root-Associated Fungi Shared Between Arbuscular Mycorrhizal and Ectomycorrhizal Conifers in a Temperate Forest
Cited by: 40
Author(s): Hirokazu Toju, Hirotoshi Sato
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.01696

From the Surface to the Deep-Sea: Bacterial Distributions across Polymetallic Nodule Fields in the Clarion-Clipperton Zone of the Pacific Ocean
Cited by: 44
Author(s): Markus V. Lindh, Brianne M. Maillot, Christine N. Shulse, Andrew J. Gooday, Diva J. Amon, Craig R. Smith, Matthew J. Church
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.00668

High-Alpine Permafrost and Active-Layer Soil Microbiomes Differ in Their Response to Elevated Temperatures
Cited by: 34
Author(s): Petra Luláková, Carla Perez-Mon, Hana Šantrůčková, Joel Ruethi, Beat Frey
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.632264

Covariance of Phytoplankton, Bacteria, and Zooplankton Communities Within Microcystis Blooms in San Francisco Estuary
Cited by: 5
Author(s): Peggy W. Lehman, Tomofumi Kurobe, Khiet Huynh, Sarah Lesmeister, Swee J. Teh
Software Mentions: 2
Published: about 5 years ago