cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1016/j.geoderma.2020.114474

Mineral–nutrient relationships in African soils assessed using cluster analysis of X-ray powder diffraction patterns and compositional methods
Cited by: 22
Author(s): Benjamin Butler, Javier Palarea‐Albaladejo, Keith D. Shepherd, Kamau M. Nyambura, Erick K. Towett, Andrew Sila, S. J. Hillier
Software Mentions: 3
Published: about 4 years ago

10.1186/s13742-015-0086-1

Evaluating a multigene environmental DNA approach for biodiversity assessment
Cited by: 118
Author(s): Alexei J. Drummond, Richard D. Newcomb, Thomas R. Buckley, Donghua Xie, Andrew Dopheide, Benjamin C. M. Potter, Joseph Heled, Howard A. Ross, Leah Tooman, Stefanie Grosser, Duckchul Park, Nicholas J. Demetras, Mark I. Stevens, James C. Russell, Sandra Anderson, Anna Carter, Nicola J. Nelson
Software Mentions: 3
Published: about 9 years ago

10.1080/19490976.2020.1788898

TH1 cell-inducing Escherichia coli strain identified from the small intestinal mucosa of patients with Crohn’s disease
Cited by: 35
Author(s): Shiho Nagayama, Tomonori Yano, Koji Atarashi, Takeshi Tanoue, Mariko Sekiya, Yasutoshi Kobayashi, Hirotsugu Sakamoto, Kouichi Miura, Keijiro Sunada, Takaaki Kawaguchi, Satoru Morita, Kayoko Sugita, Seiko Narushima, Nicolas Barnich, Jun Isayama, Yuko Kiridooshi, Atsushi Shiota, Wataru Suda, Masahira Hattori, Hironori Yamamoto, Kenya Honda
Software Mentions: 3
Published: over 4 years ago

10.1080/19490976.2020.1862027

Changes in IgA-targeted microbiota following fecal transplantation for recurrent Clostridioides difficile infection
Cited by: 11
Author(s): Kelsey E. Huus, Marcin Frankowski, Maja Pučić‐Baković, Frano Vučković, Gordan Lauc, Benjamin H. Mullish, Julian R. Marchesi, Tanya Monaghan, Dina Kao, B. Brett Finlay
Software Mentions: 3
Published: almost 4 years ago

10.1080/19490976.2020.1830699

Exposure to soil environments during earlier life stages is distinguishable in the gut microbiome of adult mice
Cited by: 5
Author(s): Wenjun Liu, Zheng Sun, Castello Ma, Jiachao Zhang, Chenchen Ma, Yinjian Zhao, Hong Wei, Shi Huang, Heping Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-017-08401-3

Interactions count: plant origin, herbivory and disturbance jointly explain seedling recruitment and community structure
Cited by: 4
Author(s): Lotte Korell, Birgit Lang, Isabell Hensen, Harald Auge, Helge Bruelheide
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-08683-7

Effects of contaminants of emerging concern on Megaselia scalaris (Lowe, Diptera: Phoridae) and its microbial community
Cited by: 18
Author(s): Marcus J. Pennington, Jason A. Rothman, Michael B. Jones, Quinn S. McFrederick, Jay Gan, John T. Trumble
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-07639-1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
Cited by: 47
Author(s): Yannick Colin, Océane Nicolitch, Joy D. Van Nostrand, Jizhong Zhou, M.-P. Turpault, Stéphane Uroz
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-10663-w

Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses
Cited by: 100
Author(s): Leonardo Mancabelli, Christian Milani, Gabriele Andrea Lugli, Francesca Turroni, Marta Mangifesta, Alice Viappiani, Andrea Ticinesi, Antonio Nouvenne, Tiziana Meschi, Douwe van Sinderen, Marco Ventura
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-11427-2

The salivary microbiome is consistent between subjects and resistant to impacts of short-term hospitalization
Cited by: 29
Author(s): Damien J. Cabral, Jenna I. Wurster, Myrto Eleni Flokas, Michail Alevizakos, Michelle A. Zabat, Benjamin J. Korry, Aislinn D. Rowan, William H. Sano, Nikolaos Andreatos, Robert Ducharme, Philip A. Chan, Eleftherios Mylonakis, Beth Burgwyn Fuchs, Peter Belenky
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-11546-w

Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems
Cited by: 17
Author(s): Caitlin Potter, Chris Freeman, Peter N. Golyshin, Gail Ackermann, Nathalie Fenner, James E. McDonald, Abdassalam Ehbair, Timothy G. J. Jones, Loretta M. Murphy, Simon Creer
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-15624-x

Influences of anthropogenic land use on microbial community structure and functional potentials of stream benthic biofilms
Cited by: 31
Author(s): Xiaodong Qu, Ze Ren, Haiping Zhang, Min Zhang, Yuhang Zhang, Xiaobo Liu, Wenqi Peng
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-15598-w

Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica
Cited by: 62
Author(s): Keilor Rojas-Jiménez, Christian Wurzbacher, Elizabeth C. Bourne, Amy Chiuchiolo, John C. Priscu, Hans‐Peter Grossart
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-017-16371-9

Comparative Genomics of Color Morphs In the Coral Montastraea cavernosa
Cited by: 9
Author(s): Jessica K. Jarett, Matthew D. MacManes, Kathleen M. Morrow, M. Sabrina Pankey, Michael P. Lesser
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-018-20589-6

The effects of glyphosate, glufosinate, paraquat and paraquat-diquat on soil microbial activity and bacterial, archaeal and nematode diversity
Cited by: 60
Author(s): Paul G. Dennis, T. Kukulies, Christian Forstner, Thomas G. Orton, Anthony B. Pattison
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-21440-8

Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract
Cited by: 103
Author(s): Carl J. Yeoman, Suzanne L. Ishaq, Elena Bichi, Sarah K. Olivo, James Lowe, Brian Aldridge
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-25701-4

Dissection of niche competition between introduced and indigenous arbuscular mycorrhizal fungi with respect to soybean yield responses
Cited by: 35
Author(s): Rieko Niwa, Toshie Koyama, Takumi Sato, Katsuki Adachi, Keitaro Tawaraya, Shusei Sato, Hideki Hirakawa, Shigenobu Yoshida, Tatsuhiro Ezawa
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-26713-w

Effect of different types of olive oil pomace dietary supplementation on the rumen microbial community profile in Comisana ewes
Cited by: 41
Author(s): Federica Mannelli, Alice Cappucci, Francesco Pini, Roberta Pastorelli, Francesca Decorosi, Luciana Giovannetti, Marcello Mele, Sara Minieri, Giuseppe Conte, Mariano Pauselli, Stefano Rapaccini, Carlo Viti, Arianna Buccioni
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-27100-1

Spatial and Environmental Variation of the Human Hair Microbiota
Cited by: 24
Author(s): Lauren Brinkac, Thomas H. Clarke, Harinder Singh, Chris Greco, Andrés Gómez, Manolito Torralba, Bryan Frank, Karen E. Nelson
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-28905-w

Unique subgingival microbiota associated with periodontitis in cirrhosis patients
Cited by: 24
Author(s): A. S. Jensen, Lea Ladegaard Grønkjær, Palle Holmstrup, Hendrik Vilstrup, Mogens Kilian
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-29442-2

Actinobacteria associated with Chinaberry tree are diverse and show antimicrobial activity
Cited by: 12
Author(s): Ke Zhao, Jing Li, Mingli Shen, Qiang Chen, Maoke Liu, Xiaolin Ao, Decong Liao, Yunfu Gu, Kaiwei Xu, Menggen Ma, Xiumei Yu, Quanju Xiang, Ji Chen, Xiaoping Zhang, Petri Penttinen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-29307-8

Mineralogical and textural characteristics of nest building geomaterials used by three sympatric mud-nesting hirundine species
Cited by: 9
Author(s): Dimitrios Papoulis, Olga Tzortzakaki, Pavlos Avramidis, Panagiotis Mentis, Paraskevi Lampropoulou, George Iliopoulos
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-29730-x

Types of tobacco consumption and the oral microbiome in the United Arab Emirates Healthy Future (UAEHFS) Pilot Study
Cited by: 39
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Raghib Ali, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha S. Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla Al Junaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Michael Weitzman, Eiman Al Zaabi, Scott E. Sherman, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-29759-y

High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis
Cited by: 36
Author(s): Simon Ghaly, Nadeem O. Kaakoush, Frances Lloyd, Terence McGonigle, D. Mok, Angela Baird, Borut Klopcic, Lavinia Gordon, Shelley Gorman, Cynthia Forest, Roger Bouillon, Ian C. Lawrance, Prue H. Hart
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-30179-1

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing
Cited by: 40
Author(s): Francisco J. A. Nascimento, Delphine Lallias, Holly M. Bik, Simon Creer
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-77396-1

Evaluating the performance of the Bayesian mixing tool MixSIAR with fatty acid data for quantitative estimation of diet
Cited by: 11
Author(s): Alicia Guerrero, Tracey L. Rogers
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-020-77806-4

The potential role of vitamin D supplementation as a gut microbiota modifier in healthy individuals
Cited by: 82
Author(s): Parul Singh, Arun K. Rawat, Mariam Alwakeel, Elham Sharif, Souhaila Al Khodor
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-79206-0

Soil fungal and bacterial communities in southern boreal forests of the Greater Khingan Mountains and their relationship with soil properties
Cited by: 11
Author(s): Thi‐Minh‐Dien Vuong, Jianyong Zeng, Xiuling Man
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-79022-6

Maternal diet alters human milk oligosaccharide composition with implications for the milk metagenome
Cited by: 68
Author(s): Maxim D. Seferovic, Mahmoud A. Mohammad, Ryan M. Pace, Melinda A. Engevik, James Versalovic, Lars Bode, Morey W. Haymond, Kjersti M. Aagaard
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-80732-0

Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Cited by: 11
Author(s): Toke Bang‐Andreasen, Mette Peltre, Lea Ellegaard-Jensen, Lars Hestbjerg Hansen, Morten Ingerslev, Regin Rønn, Carsten Suhr Jacobsen, Rasmus Kjøller
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-82570-0

The acidified drinking water-induced changes in the behavior and gut microbiota of wild-type mice depend on the acidification mode
Cited by: 13
Author(s): Brandon Whipple, Jennifer Agar, Jing Zhao, David A. Pearce, Attila Kovács
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-83597-z

Potential impacts of marine urbanization on benthic macrofaunal diversity
Cited by: 22
Author(s): Kyosuke Momota, Shinya Hosokawa
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-83783-z

The pelvic flexure separates distinct microbial communities in the equine hindgut
Cited by: 1
Author(s): Kailee J. Reed, I.G.Z. Kunz, J.A. Scare, Martin K. Nielsen, Philip Turk, Robert J. Coleman, S. J. Coleman
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-84660-5

Supplementation of tuna hydrolysate and insect larvae improves fishmeal replacement efficacy of poultry by-product in Lates calcarifer (Bloch, 1790) juveniles
Cited by: 28
Author(s): Reaz Chaklader, Janet Howieson, Muhammad A.B. Siddik, Javed Foysal, Ravi Fotedar
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-84901-7

Association of maternal gut microbiota and plasma metabolism with congenital heart disease in offspring: a multi-omic analysis
Cited by: 7
Author(s): Tingting Wang, Lizhang Chen, Peng Huang, Tubao Yang, Senmao Zhang, Lijuan Zhao, Letao Chen, Zi‐Wei Ye, Liu Luo, Jiabi Qin
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-84928-w

Gut microbiota markers associated with obesity and overweight in Italian adults
Cited by: 132
Author(s): Vanessa Palmas, Silvia Pisanu, Veronica Madau, Emanuela Casula, Andrea Deledda, Roberto Cusano, Paolo Uva, Sarah Vascellari, Andrea Loviselli, Aldo Manzin, Fernanda Velluzzi
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-85482-1

Benchmarking DNA isolation kits used in analyses of the urinary microbiome
Cited by: 14
Author(s): Lisa Karstens, Nazema Y. Siddiqui, Tamara Zaza, Alecsander Barstad, Cindy L. Amundsen, Tatyana A. Sysoeva
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-85516-8

First description of deep benthic habitats and communities of oceanic islands and seamounts of the Nazca Desventuradas Marine Park, Chile
Cited by: 10
Author(s): Jan M. Tapia-Guerra, Ariadna Mechó, Erin E. Easton, María de los Ángeles Gallardo, Matthias Gorny, Javier Sellanes
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-85784-4

Ultrafine particles altered gut microbial population and metabolic profiles in a sex-specific manner in an obese mouse model
Cited by: 6
Author(s): Kundi Yang, Mengyang Xu, Jingyi Cao, Qi Zhu, Monica Sharfin Rahman, Britt A. Holmén, Naomi K. Fukagawa, Jiangjiang Zhu
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-87162-6

Limnological response from high-altitude wetlands to the water supply in the Andean Altiplano
Cited by: 2
Author(s): Ignacio García-Sanz, Inger Heine-Fuster, José A. Luque, H. Pizarro, Rodrigo Castillo, Matías Pailahual, Manuel Prieto, Pablo Pérez-Portilla, Adriana Aránguiz-Acuña
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-87017-0

The larval environment strongly influences the bacterial communities of Aedes triseriatus and Aedes japonicus (Diptera: Culicidae)
Cited by: 6
Author(s): Elijah O. Juma, Brian F. Allan, Chang‐Hyun Kim, Chris Stone, Christopher A. Dunlap, Ephantus J. Muturi
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-87623-y

Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus
Cited by: 11
Author(s): Coralea Stephanou, Michalis Omirou, Laurent Philippot, Andreas M. Zissimos, Irene C. Christoforou, Slave Trajanoski, Anastasis Oulas, Ioannis M. Ioannides
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-89516-6

The lower respiratory tract microbiome of critically ill patients with COVID-19
Cited by: 42
Author(s): Paolo Gaibani, Elisa Viciani, Michele Bartoletti, Russell E. Lewis, Tommaso Tonetti, Donatella Lombardo, Andréa Castagnetti, Federica Bovo, Clara Solera Horna, Marco Ranieri, Pierluigi Viale, Maria Carla Re, Simone Ambretti
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-91452-4

Host specific endophytic microbiome diversity and associated functions in three varieties of scented black rice are dependent on growth stage
Cited by: 29
Author(s): Kunal Singha, Brahmanand Singh, Piyush Pandey
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-91755-6

Changes in soil microbial community and activity caused by application of dimethachlor and linuron
Cited by: 14
Author(s): Juraj Medo, Jana Maková, Janka Medová, Nikola Lipková, Renata Cinkocki, Radoslav Omelka, Soňa Javoreková
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-92763-2

Contrasting alien effects on native diversity along biotic and abiotic gradients in an arid protected area
Cited by: 2
Author(s): Reham F. El‐Barougy, Ibrahim Elgamal, Abdel‐Hamid A. Khedr, Louis‐Félix Bersier
Software Mentions: 3
Published: over 3 years ago

10.1038/s41396-020-00820-x

Genomics and metatranscriptomics of biogeochemical cycling and degradation of lignin-derived aromatic compounds in thermal swamp sediment
Cited by: 27
Author(s): David J. Levy‐Booth, Ameena Hashimi, Raphael Roccor, Liyang Liu, Scott Renneckar, Lindsay D. Eltis, William W. Mohn
Software Mentions: 3
Published: about 4 years ago

10.1038/s41396-021-00897-y

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
Cited by: 79
Author(s): Christian Santos‐Medellín, Laura Zinke, Anneliek M. ter Horst, Danielle L. Gelardi, Sanjai J. Parikh, Joanne B. Emerson
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41396-019-0551-4

Biodiversity of protists and nematodes in the wild nonhuman primate gut
Cited by: 30
Author(s): Allison E. Mann, Florent Mazel, Matthew A. Lemay, Evan Morien, Vincent Billy, Martín M. Kowalewski, Anthony Di Fiore, Andrés Link, Tony L. Goldberg, Stacey R. Tecot, Andrea L. Baden, Andrés Gómez, Michelle L. Sauther, Frank P. Cuozzo, Gillian A.O. Rice, Nathaniel J. Dominy, Rebecca M. Stumpf, Rebecca J. Lewis, Larissa Swedell, Katherine R. Amato, Laura Wegener Parfrey
Software Mentions: 3
Published: about 5 years ago

10.1038/ismej.2016.40

Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
Cited by: 37
Author(s): Nicholas E. Ilott, Julia Bollrath, Camille Danne, Chris Schiering, Matthew Shale, Krista Adelmann, Thomas Krausgruber, Andreas Heger, David Sims, Fiona Powrie
Software Mentions: 3
Published: over 8 years ago

10.1038/s41396-020-0655-x

Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow
Cited by: 38
Author(s): Alexander Crits-Christoph, Matthew R. Olm, Spencer Diamond, Keith Bouma‐Gregson, Jillian F. Banfield
Software Mentions: 3
Published: over 4 years ago

10.3390/jof6040317

Space and Vine Cultivar Interact to Determine the Arbuscular Mycorrhizal Fungal Community Composition
Cited by: 3
Author(s): Álvaro López‐García, José A. Jurado‐Rivera, Josefina Bota, J. Cifré, Elena Baraza
Software Mentions: 3
Published: about 4 years ago

10.3390/jof6040335

Rye Snow Mold-Associated Microdochium nivale Strains Inhabiting a Common Area: Variability in Genetics, Morphotype, Extracellular Enzymatic Activities, and Virulence
Cited by: 12
Author(s): Vladimir Gorshkov, Elena Osipova, М. Л. Пономарева, Sergey Ponomarev, Natalia Gogoleva, Olga Petrova, Olga Gogoleva, Azat Meshcherov, Alexander S. Balkin, Е. П. Ветчинкина, Kim O. Potapov, Alexander A. Kamnev, Viktor Korzun
Software Mentions: 3
Published: almost 4 years ago

10.3390/jof7040244

Microbiome Status of Cider-Apples, from Orchard to Processing, with a Special Focus on Penicillium expansum Occurrence and Patulin Contamination
Cited by: 10
Author(s): Reem Al Riachy, Caroline Strub, Noël Durand, Benjamin Guibert, Hugues Guichard, Florentin Constancias, Vincent Chochois, Félicie Lopez-Lauri, Angélique Fontana, Sabine Schorr‐Galindo
Software Mentions: 3
Published: over 3 years ago

10.3390/jof7070550

Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza?
Cited by: 8
Author(s): Sarah Dellière, Éric Dannaoui, M. Fieux, P. Bonfils, Guillaume Gricourt, Vanessa Démontant, Isabelle Podglajen, Paul‐Louis Woerther, Cécile Angebault, Françoise Botterel
Software Mentions: 3
Published: over 3 years ago

10.3390/ijerph14010037

Investigation of Indoor Air Quality in Houses of Macedonia
Cited by: 29
Author(s): Silvia Vilčeková, Ilija Zoran Apostoloski, Ľudmila Mečiarová, Eva Krídlová Burdová, Jozef Kiseľák
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijerph16214221

Field Research on Mixing Aeration in a Drinking Water Reservoir: Performance and Microbial Community Structure
Cited by: 10
Author(s): Zizhen Zhou, Tinlin Huang, Wenyu Gong, Yang Li, Yue Liu, Shilei Zhou
Software Mentions: 3
Published: about 5 years ago

10.1007/s00442-017-3921-5

Nitrogen effects on the pelagic food web are modified by dissolved organic carbon
Cited by: 8
Author(s): Anne Deininger, Carolyn Faithfull, Ann‐Kristin Bergström
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.00458

Cohabiting family members share microbiota with one another and with their dogs
Cited by: 766
Author(s): Se Jin Song, Christian L. Lauber, Elizabeth K. Costello, Catherine Lozupone, Gregory Humphrey, Donna Berg-Lyons, J. Gregory Caporaso, Dan Knights, José C. Clemente, Sara Nakielny, Jeffrey I. Gordon, Noah Fierer, Rob Knight
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.48479

High fat diet induces microbiota-dependent silencing of enteroendocrine cells
Cited by: 68
Author(s): Lihua Ye, Olaf Mueller, Jennifer Bagwell, Michel Bagnat, Rodger A. Liddle, John F. Rawls
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.50240

Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Cited by: 100
Author(s): Tarini Shankar Ghosh, Mrinmoy Das, Ian B. Jeffery, Paul W. O’Toole
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms17111734

Pine Defensive Monoterpene α-Pinene Influences the Feeding Behavior of Dendroctonus valens and Its Gut Bacterial Community Structure
Cited by: 33
Author(s): Letian Xu, Zhanghong Shi, Bo Wang, Min Lü, Sun Jian
Software Mentions: 3
Published: about 8 years ago

10.3390/ijms20092265

Effect of Drought Stress and Developmental Stages on Microbial Community Structure and Diversity in Peanut Rhizosphere Soil
Cited by: 58
Author(s): Lei Dai, Guanchu Zhang, Zipeng Yu, Hong Ding, Yang Xu, Zhimeng Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20163980

A Metagenomic-Based Approach for the Characterization of Bacterial Diversity Associated with Spontaneous Malolactic Fermentations in Wine
Cited by: 38
Author(s): Carmen Berbegal, Luigimaria Borruso, Mariagiovanna Fragasso, Maria Tufariello, Pasquale Russo, Lorenzo Brusetti, Giuseppe Spano, Vittorio Capozzi
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21010272

Physiological and Metabolic Effects of Yellow Mangosteen (Garcinia dulcis) Rind in Rats with Diet-Induced Metabolic Syndrome
Cited by: 24
Author(s): Oliver D. John, Peter Mouatt, Marwan E. Majzoub, Torsten Thomas, Sunil K. Panchal, Lindsay Brown
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21020386

Fecal Microbiota Transplantation Prevents Intestinal Injury, Upregulation of Toll-Like Receptors, and 5-Fluorouracil/Oxaliplatin-Induced Toxicity in Colorectal Cancer
Cited by: 100
Author(s): Ching Wei Chang, Hung Chang Lee, Li Hui Li, Jen-Shiu Chiang Chiau, Tsang En Wang, Wei Hung Chuang, Ming Jen Chen, Horng Yuan Wang, Shou Chuan Shih, Chia Yuan Liu, Tung Hu Tsai, Yu-Jen Chen
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21030945

Effect of Pepper-Containing Diets on the Diversity and Composition of Gut Microbiome of Drosophila melanogaster
Cited by: 8
Author(s): Marleny García-Lozano, Joshua Haynes, Carlos Lopez-Ortiz, Purushothaman Natarajan, Yadira Peña-Garcia, Padma Nimmakayala, John R. Stommel, Suresh Babu Alaparthi, Cristian Sirbu, Nagamani Balagurusamy, Umesh K. Reddy
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21134634

New Insight into the Composition of Wheat Seed Microbiota
Cited by: 33
Author(s): Agnieszka Kuźniar, Kinga Włodarczyk, Jarosław Grządziel, Małgorzata Woźniak, Karolina Furtak, Anna Gałązka, Ewa Dziadczyk, Ewa Skórzyńska-Polit, Agnieszka Woliñska
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.00796

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient
Cited by: 20
Author(s): Moira Hough, Amelia McClure, Benjamin Bolduc, Ellen Dorrepaal, S. R. Saleska, Vanja Klepac‐Ceraj, V. I. Rich
Software Mentions: 3
Published: over 4 years ago

10.1186/s12936-021-03606-4

Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota
Cited by: 24
Author(s): Diana Omoke, Mathew Kipsum, Solomon Otieno, Edward Esalimba, Mili Sheth, Audrey Lenhart, Ezekiel Mugendi Njeru, Eric Ochomo, Nsa Dada
Software Mentions: 3
Published: almost 4 years ago

10.1002/lom3.10237

Evaluation of marine zooplankton community structure through environmental DNA metabarcoding
Cited by: 97
Author(s): Anni Djurhuus, Kathleen J. Pitz, Natalie A. Sawaya, Jaimie Rojas‐Márquez, Brianna Michaud, Enrique Montes, Frank E. Müller-Karger, Mya Breitbart
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-64027-y

Nitrifying biofilms deprived of organic carbon show higher functional resilience to increases in carbon supply
Cited by: 20
Author(s): Sharada Navada, Maja F. Knutsen, Ingrid Bakke, Ôlav Vadstein
Software Mentions: 3
Published: over 4 years ago

10.3390/life10020013

Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, Antarctica
Cited by: 12
Author(s): Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Jason E. Stajich, Laura Selbmann
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0124599

Sex, Body Mass Index, and Dietary Fiber Intake Influence the Human Gut Microbiome
Cited by: 303
Author(s): Christine Dominianni, Rashmi Sinha, James J. Goedert, Zhiheng Pei, Liying Yang, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 3
Published: over 9 years ago

10.3390/microorganisms9081562

The Nexus between Fire and Soil Bacterial Diversity in the African Miombo Woodlands of Niassa Special Reserve, Mozambique
Cited by: 5
Author(s): Ivete Maquia, Paula Fareleira, Isabel Videira e Castro, Ricardo Soares, Denise R. A. Brito, Aires Afonso Mbanze, Aniceto Chaúque, Cristina Máguas, Obinna T. Ezeokoli, Natasha Ribeiro, Isabel Marques, Ana I. Ribeiro‐Barros
Software Mentions: 3
Published: over 3 years ago

10.1002/cam4.2660

Oral microbial community composition is associated with pancreatic cancer: A case‐control study in Iran
Cited by: 36
Author(s): Emily Vogtmann, Yongli Han, J. Gregory Caporaso, Nicholas A. Bokulich, Muhammad Ashraf, Alireza Moayyedkazemi, Xing Hua, Farin Kamangar, Yunhu Wan, Shalabh Suman, Bin Zhu, Amy Hutchinson, Casey Dagnall, Kristine Jones, Belynda Hicks, Jianxin Shi, Reza Malekzadeh, Christian C. Abnet, Akram Pourshams
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms8060872

Arbuscular Mycorrhizal Fungal Communities of Native Plant Species under High Petroleum Hydrocarbon Contamination Highlights Rhizophagus as a Key Tolerant Genus
Cited by: 10
Author(s): Soon‐Jae Lee, Mengxuan Kong, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-64761-3

Fluconazole resistance in Candida albicans is induced by Pseudomonas aeruginosa quorum sensing
Cited by: 31
Author(s): Nihal Bandara, David Wood, Inka Vanwonterghem, Philip Hugenholtz, Bmy Cheung, LP Samaranayake
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-65031-y

Metagenomic analysis of an urban resistome before and after wastewater treatment
Cited by: 50
Author(s): Felipe Lira, Ivone Vaz‐Moreira, Javier Tamames, Célia M. Manaia, José Luis Martínez
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-64779-7

Hurricane-induced disturbance increases genetic diversity and population admixture of the direct-brooding isopod, Gnathia marleyi
Cited by: 9
Author(s): J. Andrés Pagán, Ana Veríssimo, Paul C. Sikkel, Raquel Xavier
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.615661

A Model System for Feralizing Laboratory Mice in Large Farmyard-Like Pens
Cited by: 10
Author(s): Henriette Arnesen, Linn Emilie Knutsen, Bente Wabakken Hognestad, G. Johansen, Mats Bemark, Oliver Pabst, Anne K. Storset, Preben Boysen
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2020.536787

Combined Microbial Consortium Inoculation and Black Locust Planting Is Effective in the Bioremediation of Waste Drill Cuttings
Cited by: 3
Author(s): Hanjun Liu, Lirong Chen, En T. Wang, Yihao Liu, Lingzi Zhang, Ke Zhao, Yunfu Gu, Xiumei Yu, Menggen Ma, Petri Penttinen, Xiaoping Zhang, Min Huang, Lei Deng, Qiang Chen
Software Mentions: 3
Published: about 4 years ago

10.1038/s41416-019-0572-9

Aberrations in Notch-Hedgehog signalling reveal cancer stem cells harbouring conserved oncogenic properties associated with hypoxia and immunoevasion
Cited by: 30
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 3
Published: about 5 years ago

10.1186/s42523-021-00090-8

Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats
Cited by: 3
Author(s): Britton A. Strickland, Manan S. Patel, Meghan H. Shilts, Helen H. Boone, Arash Kamali, Wei Zhang, Daniel Stylos, Marina S. Boukhvalova, Christian Rosas‐Salazar, Shibu Yooseph, Seesandra V. Rajagopala, Jorge C. G. Blanco, Suman Das
Software Mentions: 3
Published: over 3 years ago

10.1128/AEM.02574-17

Temporal and Regional Variability in the Skin Microbiome of Humpback Whales along the Western Antarctic Peninsula
Cited by: 37
Author(s): K. C. Bierlich, Colin Miller, Emelia DeForce, Ari S. Friedlaender, David W. Johnston, Amy Apprill
Software Mentions: 3
Published: almost 7 years ago

10.3390/microorganisms8111708

Bacterial Communities in the Rhizosphere and Phyllosphere of Halophytes and Drought-Tolerant Plants in Mediterranean Ecosystems
Cited by: 11
Author(s): Savvas Genitsaris, Natassa Stefanidou, Kleopatra Leontidou, Theodora Matsi, Katerina Karamanoli, Ιfigeneia Mellidou
Software Mentions: 3
Published: about 4 years ago

10.3390/biomedicines9010019

Gut Microbiome Composition Remains Stable in Individuals with Diabetes-Related Early to Late Stage Chronic Kidney Disease
Cited by: 11
Author(s): Ashani Lecamwasam, Tiffanie M. Nelson, Leni R. Rivera, Elif I Ekinci, Richard Saffery, Karen M. Dwyer
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2019.02599

Crop Sorghum Ensiled With Unsalable Vegetables Increases Silage Microbial Diversity
Cited by: 11
Author(s): Daniel L. Forwood, Kristian Hooker, Eleonora Caro, Yuxin Huo, Devin B. Holman, S. J. Meale, Alex V. Chaves
Software Mentions: 3
Published: about 5 years ago

10.1128/mSphere.01252-20

Tongue Microbiota Composition and Dental Caries Experience in Primary School Children
Cited by: 8
Author(s): Daixi Zhang, Toru Takeshita, Michiko Furuta, Shinya Kageyama, Mikari Asakawa, Koki Nambu, Yoshihisa Yamashita
Software Mentions: 3
Published: over 3 years ago

10.3390/microorganisms8111687

Nitrifying Microbes in the Rhizosphere of Perennial Grasses Are Modified by Biological Nitrification Inhibition
Cited by: 9
Author(s): Yi Zhou, Christopher J. Lambrides, Jishun Li, Qili Xu, Ruey Toh, Shenzhong Tian, Peizhi Yang, Yang He-tong, Maarten H. Ryder, Matthew D. Denton
Software Mentions: 3
Published: about 4 years ago

10.3390/microorganisms9061329

Sweet Sorghum Genotypes Tolerant and Sensitive to Nitrogen Stress Select Distinct Root Endosphere and Rhizosphere Bacterial Communities
Cited by: 8
Author(s): Lucas Dantas Lopes, Yen Ning Chai, Ellen L. Marsh, J. F. Rajewski, İsmail Dweikat, Daniel P. Schachtman
Software Mentions: 3
Published: over 3 years ago

10.3390/microorganisms9010148

Effects of Dysbiosis and Dietary Manipulation on the Digestive Microbiota of a Detritivorous Arthropod
Cited by: 3
Author(s): Marius Bredon, Elisabeth Depuydt, Lucas Brisson, Laurent Moulin, C. Mook Charles, Sophie Haenn, Bouziane Moumen, Didier Bouchon
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-65643-4

Station and train surface microbiomes of Mexico City’s metro (subway/underground)
Cited by: 14
Author(s): Apolinar M. Hernández, Daniela Vargas-Robles, Luis David Alcaraz, Mariana Peimbert
Software Mentions: 3
Published: over 4 years ago

10.1098/rspb.2019.2214

Coral species composition drives key ecosystem function on coral reefs
Cited by: 18
Author(s): Laura E. Richardson, Nicholas A. J. Graham, Andrew S. Hoey
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.9732

Belowground fungal community diversity, composition and ecological functionality associated with winter wheat in conventional and organic agricultural systems
Cited by: 5
Author(s): Sigisfredo Garnica, Ronja Rosenstein, Max Emil Schön
Software Mentions: 3
Published: about 4 years ago

10.1128/AEM.02803-20

Localization of Bacterial Communities within Gut Compartments across Cephalotes Turtle Ants
Cited by: 14
Author(s): Peter J. Flynn, Catherine L. D’Amelio, Jon G. Sanders, Jacob A. Russell, Corrie S. Moreau
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0226432

An inter-island comparison of Darwin’s finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome
Cited by: 13
Author(s): Wesley T. Loo, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-66005-w

A practical assessment of nano-phosphate on soybean (Glycine max) growth and microbiome establishment
Cited by: 14
Author(s): Michelle M. McKnight, Zhi Qu, John W. Copeland, David S. Guttman, Virginia K. Walker
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2014.00531

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
Cited by: 58
Author(s): Maggie C. Y. Lau, Connor Cameron, Cara Magnabosco, C. Titus Brown, Faye Schilkey, Sharon L. Grim, Sarah Hendrickson, Michael J. Pullin, Barbara Sherwood Lollar, Esta van Heerden, Thomas L. Kieft, Tullis C. Onstott
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-020-66067-w

AMF communities associated to Vitis vinifera in an Italian vineyard subjected to integrated pest management at two different phenological stages
Cited by: 14
Author(s): Nadia Massa, Elisa Bona, Giorgia Novello, Valeria Todeschini, Lara Boatti, Flavio Mignone, Elisa Gamalero, Graziano Lingua, Graziella Berta, Patrizia Cesaro
Software Mentions: 3
Published: over 4 years ago

Projects: cran: PERMANOVA

Papers Mentioning PERMANOVA 6,292