Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: LDlinkR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/LDlinkR

Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest
10 versions
Latest release: over 1 year ago
783 downloads last month

Papers Mentioning LDlinkR 10

Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells
Cited by: 47
Author(s): Drew Neavin, Quan Nguyen, Maciej Daniszewski, Helena Liang, Han Sheng Chiu, Yong Kiat Wee, Anne Senabouth, Samuel W. Lukowski, Duncan E. Crombie, Grace E. Lidgerwood, Damián Hernández, James C. Vickers, Anthony Cook, Nathan J. Palpant, Alice Pébay, Alex W. Hewitt, Joseph E. Powell
Software Mentions: 12
Published: over 3 years ago

10.7554/eLife.58705

Co-expression analysis reveals interpretable gene modules controlled by trans-acting genetic variants
Cited by: 23
Author(s): Liis Kolberg, Nurlan Kerimov, Hedi Peterson, Kaur Alasoo
Software Mentions: 11
Published: about 4 years ago

10.1101/2021.02.23.432450

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Cited by: 4
Author(s): Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Laura K. Donohue, Ian Ferguson, Margaret Guo, Deepti Rao, Weili Miao, David L. Reynolds, Xue Yang, Yang Zhao, Yen-Yu Yang, Yinsheng Wang, Paul A. Khavari
Software Mentions: 6
Published: over 3 years ago

10.1002/mds.28197

The Parkinson's Disease <scp>Genome‐Wide</scp> Association Study Locus Browser
Cited by: 61
Author(s): Francis P. Grenn, Jonggeol J. Kim, Mary B. Makarious, Hirotaka Iwaki, Anastasia Illarionova, Kajsa Brolin, Jillian H. Kluss, Artur Schumacher-Schuh, Hampton Leonard, Faraz Faghri, Kimberley Billingsley, Lynne Krohn, Ashley Hall, Mónica Díez-Fairén, María Teresa Periñán, Jia Nee Foo, Cynthia Sandor, Caleb Webber, Brian Fiske, J. Raphael Gibbs, Mike A. Nalls, Andrew B. Singleton, Sara Bandrés‐Ciga, Xylena Reed, Cornelis Blauwendraat
Software Mentions: 5
Published: about 4 years ago

10.1186/s40246-021-00359-8

Protective chromosome 1q32 haplotypes mitigate risk for age-related macular degeneration associated with the CFH-CFHR5 and ARMS2/HTRA1 loci
Cited by: 15
Author(s): Chris Pappas, Moussa A. Zouache, Stacie Matthews, Caitlin D. Faust, Jill L. Hageman, Brandi L. Williams, Burt Richards, Gregory S. Hageman
Software Mentions: 2
Published: about 3 years ago

10.1038/s10038-020-00895-6

Variation in the SERPINA6/SERPINA1 locus alters morning plasma cortisol, hepatic corticosteroid binding globulin expression, gene expression in peripheral tissues, and risk of cardiovascular disease
Cited by: 30
Author(s): Andrew Crawford, Sean Bankier, Elisabeth Altmaier, Catriona L. K. Barnes, David W. Clark, Raili Ermel, Nele Friedrich, Pim van der Harst, Peter K. Joshi, Ville Karhunen, Jari Lahti, Anubha Mahajan, Massimo Mangino, Maria Nethander, Alexander Neumann, Maik Pietzner, Katyayani Sukhavasi, Carol A. Wang, Stephan J. L. Bakker, Johan Björkegren, Harry Campbell, Johan G. Eriksson, Christian Gieger, Caroline Hayward, Marjo‐Riitta Järvelin, Stela McLachlan, Andrew P. Morris, Claes Ohlsson, Craig E. Pennell, Jackie F. Price, Igor Rudan, Arno Ruusalepp, Timothy D. Spector, Henning Tiemeier, Henry Völzke, James R. Wilson, Tom Michoel, Nicholas J. Timpson, George Davey Smith, Brian R. Walker
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00415-020-09980-4

Smoking and multiple sclerosis risk: a Mendelian randomization study
Cited by: 13
Author(s): Marijne Vandebergh, An Goris
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2020.00157

LDlinkR: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations
Cited by: 155
Author(s): Timothy A. Myers, Stephen J. Chanock, Mitchell J. Machiela
Software Mentions: 1
Published: over 4 years ago

10.1038/s41435-021-00142-8

Variants in BANK1 are associated with lupus nephritis of European ancestry
Cited by: 8
Author(s): Karin Bolin, Juliana Imgenberg‐Kreuz, Dag Leonard, Johanna K. Sandling, Andrei Alexsson, Pascal Pucholt, Malena Loberg Haarhaus, Jonas Carlsson Almlöf, Joanne Nititham, Andreas Jönsen, Christopher Sjöwall, Anders Bengtsson, Solbritt Rantapää‐Dahlqvist, Elisabet Svenungsson, Iva Gunnarsson, Ann Christine Syvänen, Karoline Lerang, Anne Troldborg, Anne Voß, Øyvind Molberg, Søren Jacobsen, Lindsey A. Criswell, Lars Rönnblom, Gunnel Nordmark
Software Mentions: 1
Published: over 3 years ago

10.1101/2021.05.10.21256423

Insights into genetic factors contributing to variability in SARS-CoV-2 susceptibility and COVID-19 disease severity
Cited by: 3
Author(s): Matteo D’Antonio, Timothy D. Arthur, Jennifer P. Nguyen, Hiroko Matsui, Agnieszka D’Antonio‐Chronowska, Kelly A. Frazer
Software Mentions: 1
Published: over 3 years ago