Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.58705

https://doi.org/10.7554/eLife.58705

Co-expression analysis reveals interpretable gene modules controlled by trans-acting genetic variants

Cited by: 23
Author(s): Liis Kolberg, Nurlan Kerimov, Hedi Peterson, Kaur Alasoo
Published: about 4 years ago

Software Mentions 11

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray data
Papers that mentioned: 94
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
cran: coloc
Colocalisation Tests of Two Genetic Traits
Papers that mentioned: 49
cran: LDlinkR
Calculating Linkage Disequilibrium (LD) in Human Population Groups of Interest
Papers that mentioned: 10
cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
Papers that mentioned: 81
cran: susieR
Sum of Single Effects Linear Regression
Papers that mentioned: 2
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: coloc
the COLOC method by Giambartolomei et al.
Papers that mentioned: 49
pypi: g
cli command to easily sync current directory
Papers that mentioned: 130