Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: GiRaF
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GiRaF
Gibbs Random Fields Analysis
2 versions
Latest release: about 4 years ago
3 dependent packages
241 downloads last month
Papers Mentioning GiRaF 14
10.1371/journal.pbio.3000673
“Frozen evolution” of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergenceCited by: 15
Author(s): David Pascall, Kyriaki Nomikou, Emmanuel Bréard, Stéphan Zientara, Ana da Silva Filipe, Bernd Hoffmann, Maude Jacquot, Joshua B. Singer, Kris De Clercq, Anette Bøtner, Corinne Sailleau, Cyril Viarouge, Carrie Batten, Giantonella Puggioni, Ciriaco Ligios, Giovanni Savini, Piet A. van Rijn, Peter Mertens, Roman Biek, Massimo Palmarini
Software Mentions: 18
Published: over 4 years ago
10.3389/fcimb.2020.00460
Reassortment Between Divergent Strains of Camp Ripley Virus (Hantaviridae) in the Northern Short-Tailed Shrew (Blarina brevicauda)Cited by: 5
Author(s): Schuyler Liphardt, Hae Ji Kang, Satoru Arai, Se Hun Gu, Joseph A. Cook, Richard Yanagihara
Software Mentions: 4
Published: about 4 years ago
10.1186/s12915-016-0337-3
Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spreadCited by: 32
Author(s): Irina Maljkovic Berry, Melanie C. Melendrez, Tao Li, Anthony W. Hawksworth, Gary T. Brice, Patrick J. Blair, Eric S. Halsey, M. C. Williams, Stefan Fernandez, In-Kyu Yoon, Leslie Edwards, Robert A. Kuschner, Xiangui Lin, Stephen J. Thomas, Richard G. Jarman
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pntd.0002636
Molecular Evolution of Zika Virus during Its Emergence in the 20th CenturyCited by: 642
Author(s): Oumar Faye, Caio Castro Freire, Atila Iamarino, Juliana Velasco Castro de Oliveira, Mawlouth Diallo, Paolo Marinho de Andrade Zanotto, Amadou Alpha Sall
Software Mentions: 4
Published: almost 11 years ago
10.1038/srep11353
Reassortment and distinct evolutionary dynamics of Rift Valley Fever virus genomic segmentsCited by: 17
Author(s): Caio Castro Freire, Atila Iamarino, Peinda O. Ly Soumaré, Ousmane Faye, Amadou Alpha Sall, Paolo M. A. Zanotto
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pgen.1004037
Intrasubtype Reassortments Cause Adaptive Amino Acid Replacements in H3N2 Influenza GenesCited by: 43
Author(s): Alexey D. Neverov, Ksenia Lezhnina, Alexey S. Kondrashov, Georgii A. Bazykin
Software Mentions: 3
Published: almost 11 years ago
10.1186/1471-2148-13-1
New approaches for unravelling reassortment pathwaysCited by: 86
Author(s): Victoria Svinti, James A. Cotton, James O. McInerney
Software Mentions: 3
Published: almost 12 years ago
10.1093/ve/vez027
Contrasting selective patterns across the segmented genome of bluetongue virus in a global reassortment hotspotCited by: 17
Author(s): Maude Jacquot, P P Rao, Sarita Yadav, Kyriaki Nomikou, Sushila Maan, Y Krishna Jyothi, Narasimha Y Reddy, Kalyani Putty, D. Hemadri, Karam Pal Singh, Narender S. Maan, Nagendra R. Hegde, Peter Mertens, Roman Biek
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pgen.1005404
Coordinated Evolution of Influenza A Surface ProteinsCited by: 57
Author(s): Alexey D. Neverov, Sergey Kryazhimskiy, Joshua B. Plotkin, Georgii A. Bazykin
Software Mentions: 3
Published: over 9 years ago
10.1038/srep27480
Reassortment compatibility between PB1, PB2, and HA genes of the two influenza B virus lineages in mammalian cellsCited by: 10
Author(s): Sang Hyun Kim, Ilseob Lee, Sehee Park, Jin‐Young Bae, Kyoung Shin Yoo, Philippe Lemey, Mee Sook Park, Jin Won Song, Sun‐Ho Kee, Ki-Joon Song, Man Seong Park
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pntd.0008714
Phylogeographic diversity and hybrid zone of Hantaan orthohantavirus collected in Gangwon Province, Republic of KoreaCited by: 7
Author(s): Geum Young Lee, Won Keun Kim, Kyungmin Park, Seung Ho Lee, Jusun Hwang, Jin Sun No, Seungchan Cho, Dae-Sang Lee, Dong Hyun Song, Se Hun Gu, Man Seong Park, Seong Tae Jeong, Young Su Kim, Jin Won Song
Software Mentions: 1
Published: about 4 years ago
10.2174/138920211797904052
Prospective of Genomics in Revealing Transmission, Reassortment and Evolution of Wildlife-Borne Avian Influenza A (H5N1) VirusesCited by: 32
Author(s): Fumin Lei, Weifeng Shi
Software Mentions: 1
Published: about 13 years ago
10.1099/mgen.0.000137
Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) virusesCited by: 10
Author(s): Emily Goldstein, William T. Harvey, Gavin S. Wilkie, Samantha J. Shepherd, Alasdair Maclean, Pablo R. Murcia, Rory Gunson
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12920-019-0656-7
HopPER: an adaptive model for probability estimation of influenza reassortment through host predictionCited by: 12
Author(s): Rui Yin, Xinrui Zhou, Shamima Rashid, Chee Keong Kwoh
Software Mentions: 1
Published: almost 5 years ago