Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: GiRaF

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GiRaF

Gibbs Random Fields Analysis
2 versions
Latest release: almost 4 years ago
3 dependent packages
241 downloads last month

Papers Mentioning GiRaF 14

“Frozen evolution” of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergence
Cited by: 15
Author(s): David Pascall, Kyriaki Nomikou, Emmanuel Bréard, Stéphan Zientara, Ana da Silva Filipe, Bernd Hoffmann, Maude Jacquot, Joshua B. Singer, Kris De Clercq, Anette Bøtner, Corinne Sailleau, Cyril Viarouge, Carrie Batten, Giantonella Puggioni, Ciriaco Ligios, Giovanni Savini, Piet A. van Rijn, Peter Mertens, Roman Biek, Massimo Palmarini
Software Mentions: 18
Published: over 4 years ago

10.3389/fcimb.2020.00460

Reassortment Between Divergent Strains of Camp Ripley Virus (Hantaviridae) in the Northern Short-Tailed Shrew (Blarina brevicauda)
Cited by: 5
Author(s): Schuyler Liphardt, Hae Ji Kang, Satoru Arai, Se Hun Gu, Joseph A. Cook, Richard Yanagihara
Software Mentions: 4
Published: about 4 years ago

10.1186/s12915-016-0337-3

Frequency of influenza H3N2 intra-subtype reassortment: attributes and implications of reassortant spread
Cited by: 32
Author(s): Irina Maljkovic Berry, Melanie C. Melendrez, Tao Li, Anthony W. Hawksworth, Gary T. Brice, Patrick J. Blair, Eric S. Halsey, M. C. Williams, Stefan Fernandez, In-Kyu Yoon, Leslie Edwards, Robert A. Kuschner, Xiangui Lin, Stephen J. Thomas, Richard G. Jarman
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pntd.0002636

Molecular Evolution of Zika Virus during Its Emergence in the 20th Century
Cited by: 642
Author(s): Oumar Faye, Caio Castro Freire, Atila Iamarino, Juliana Velasco Castro de Oliveira, Mawlouth Diallo, Paolo Marinho de Andrade Zanotto, Amadou Alpha Sall
Software Mentions: 4
Published: over 10 years ago

10.1038/srep11353

Reassortment and distinct evolutionary dynamics of Rift Valley Fever virus genomic segments
Cited by: 17
Author(s): Caio Castro Freire, Atila Iamarino, Peinda O. Ly Soumaré, Ousmane Faye, Amadou Alpha Sall, Paolo M. A. Zanotto
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pgen.1004037

Intrasubtype Reassortments Cause Adaptive Amino Acid Replacements in H3N2 Influenza Genes
Cited by: 43
Author(s): Alexey D. Neverov, Ksenia Lezhnina, Alexey S. Kondrashov, Georgii A. Bazykin
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-2148-13-1

New approaches for unravelling reassortment pathways
Cited by: 86
Author(s): Victoria Svinti, James A. Cotton, James O. McInerney
Software Mentions: 3
Published: over 11 years ago

10.1093/ve/vez027

Contrasting selective patterns across the segmented genome of bluetongue virus in a global reassortment hotspot
Cited by: 17
Author(s): Maude Jacquot, P P Rao, Sarita Yadav, Kyriaki Nomikou, Sushila Maan, Y Krishna Jyothi, Narasimha Y Reddy, Kalyani Putty, D. Hemadri, Karam Pal Singh, Narender S. Maan, Nagendra R. Hegde, Peter Mertens, Roman Biek
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pgen.1005404

Coordinated Evolution of Influenza A Surface Proteins
Cited by: 57
Author(s): Alexey D. Neverov, Sergey Kryazhimskiy, Joshua B. Plotkin, Georgii A. Bazykin
Software Mentions: 3
Published: about 9 years ago

10.1038/srep27480

Reassortment compatibility between PB1, PB2, and HA genes of the two influenza B virus lineages in mammalian cells
Cited by: 10
Author(s): Sang Hyun Kim, Ilseob Lee, Sehee Park, Jin‐Young Bae, Kyoung Shin Yoo, Philippe Lemey, Mee Sook Park, Jin Won Song, Sun‐Ho Kee, Ki-Joon Song, Man Seong Park
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pntd.0008714

Phylogeographic diversity and hybrid zone of Hantaan orthohantavirus collected in Gangwon Province, Republic of Korea
Cited by: 7
Author(s): Geum Young Lee, Won Keun Kim, Kyungmin Park, Seung Ho Lee, Jusun Hwang, Jin Sun No, Seungchan Cho, Dae-Sang Lee, Dong Hyun Song, Se Hun Gu, Man Seong Park, Seong Tae Jeong, Young Su Kim, Jin Won Song
Software Mentions: 1
Published: almost 4 years ago

10.2174/138920211797904052

Prospective of Genomics in Revealing Transmission, Reassortment and Evolution of Wildlife-Borne Avian Influenza A (H5N1) Viruses
Cited by: 32
Author(s): Fumin Lei, Weifeng Shi
Software Mentions: 1
Published: almost 13 years ago

10.1099/mgen.0.000137

Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses
Cited by: 10
Author(s): Emily Goldstein, William T. Harvey, Gavin S. Wilkie, Samantha J. Shepherd, Alasdair Maclean, Pablo R. Murcia, Rory Gunson
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-019-0656-7

HopPER: an adaptive model for probability estimation of influenza reassortment through host prediction
Cited by: 12
Author(s): Rui Yin, Xinrui Zhou, Shamima Rashid, Chee Keong Kwoh
Software Mentions: 1
Published: over 4 years ago