cran: GA | Projects | Ecosyste.ms: Papers

10.1534/g3.114.011759

Genomic Profiling of Collaborative Cross Founder Mice Infected with Respiratory Viruses Reveals Novel Transcripts and Infection-Related Strain-Specific Gene and Isoform Expression
Cited by: 22
Author(s): Hao Xiong, Juliet Morrison, Martin T. Ferris, Lisa E. Gralinski, Alan C. Whitmore, Richard Green, Matthew Thomas, Jennifer Tisoncik-Go, Gary P. Schroth, Fernando P Pardo Manuel De Villena, Ralph S. Baric, Mark T. Heise, Xinxia Peng, Michael G. Katze
Software Mentions: 7
Published: over 10 years ago

10.3389/fpls.2018.00029

Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth (Amaranthus palmeri) Populations Using Genotyping-by-sequencing (GBS)
Cited by: 26
Author(s): Anita Küpper, Harish Manmathan, Darci A. Giacomini, Eric Patterson, William B. McCloskey, Todd A. Gaines
Software Mentions: 7
Published: almost 7 years ago

10.3389/fgene.2020.00524

Detecting Prognosis Risk Biomarkers for Colon Cancer Through Multi-Omics-Based Prognostic Analysis and Target Regulation Simulation Modeling
Cited by: 19
Author(s): Zuojing Yin, Xinmiao Yan, Qiming Wang, Zeliang Deng, Kailin Tang, Zhiwei Cao, Tianyi Qiu
Software Mentions: 7
Published: over 4 years ago

10.1186/s13007-021-00761-2

Prediction of plant-level tomato biomass and yield using machine learning with unmanned aerial vehicle imagery
Cited by: 14
Author(s): Kenichi Tatsumi, Noa Igarashi, Xiao Mengxue
Software Mentions: 6
Published: over 3 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-90733-2

Inferring long-distance connectivity shaped by air-mass movement for improved experimental design in aerobiology
Cited by: 11
Author(s): Maria Choufany, Davide Martinetti, Samuel Soubeyrand, Cindy E. Morris
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0256691

Rosetta:MSF:NN: Boosting performance of multi-state computational protein design with a neural network
Cited by: 1
Author(s): Julian Nazet, Elmar Lang, Rainer Merkl
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0231695

Genetic algorithm-based personalized models of human cardiac action potential
Cited by: 18
Author(s): Dmitrii Smirnov, Andrey Pikunov, Roman Syunyaev, Ruslan Deviatiiarov, Oleg Gusev, Kedar Aras, Anna Gams, Aaron C. Koppel, Igor R. Efimov
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0086299

Functional Module Connectivity Map (FMCM): A Framework for Searching Repurposed Drug Compounds for Systems Treatment of Cancer and an Application to Colorectal Adenocarcinoma
Cited by: 33
Author(s): Feng Hsiang Chung, Yun Ru Chiang, Ai Lun Tseng, Yung Chuan Sung, Jean Lu, Min Chang Huang, Nianhan Ma, Hoong Chien Lee
Software Mentions: 5
Published: almost 11 years ago

10.1186/s13063-021-05543-8

Analysis of contamination in cluster randomized trials of malaria interventions
Cited by: 5
Author(s): Lea Multerer, Tracy R. Glass, Fiona Vanobberghen, T. Smith
Software Mentions: 5
Published: about 3 years ago

10.1186/1471-2164-15-S7-S4

SNPs selection using support vector regression and genetic algorithms in GWAS
Cited by: 11
Author(s): Fabrízzio Condé de Oliveira, Carlos Cristiano Hasenclever Borges, Fernanda Nascimento Almeida, Fabyano Fonseca e Silva, Rui da Silva Verneque, Marcos Vinícius Gualberto Barbosa da Silva, Wagner Arbex
Software Mentions: 5
Published: about 10 years ago

10.1002/ece3.4161

Male-biased dispersal and the potential impact of human-induced habitat modifications on the Neotropical batTrachops cirrhosus
Cited by: 7
Author(s): Tanja K. Halczok, Stefan Dominik Brändel, Victoria Flores, Sébastien J. Puechmaille, Marco Tschapka, Rachel A. Page, Gerald Kerth
Software Mentions: 5
Published: over 6 years ago

10.1002/2015WR017519

Water sources and mixing in riparian wetlands revealed by tracers and geospatial analysis
Cited by: 36
Author(s): J. S. Lessels, Doerthe Tetzlaff, Christian Birkel, Jonathan Dick, Chris Soulsby
Software Mentions: 5
Published: almost 9 years ago

10.1186/1748-7188-5-32

Gravitation field algorithm and its application in gene cluster
Cited by: 24
Author(s): Ming Zheng, Guixia Liu, Chunguang Zhou, Yanchun Liang, Yan Wang
Software Mentions: 5
Published: about 14 years ago

10.1093/bioinformatics/btv593

Automatic generation of bioinformatics tools for predicting protein–ligand binding sites
Cited by: 12
Author(s): Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, Kentaro Shimizu
Software Mentions: 5
Published: about 9 years ago

10.1002/ece3.6771

A brain and a head for a different habitat: Size variation in four morphs of Arctic charr ( Salvelinus alpinus (L.)) in a deep oligotrophic lake
Cited by: 8
Author(s): Ana-Maria Peris Tamayo, Olivier Devineau, Kim Præbel, Kimmo K. Kahilainen, Kjartan Østbye
Software Mentions: 5
Published: about 4 years ago

10.1038/sdata.2018.203

Open grid model of Australia’s National Electricity Market allowing backtesting against historic data
Cited by: 12
Author(s): Aleksis Xenophon, David J. Hill
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0242708

Multi-objective regression test suite optimization using three variants of adaptive neuro fuzzy inference system
Cited by: 5
Author(s): Ayesha Kiran, Wasi Haider Butt, Arslan Shaukat, Muhammad Umar Farooq, Urooj Fatima, Farooque Azam, Zeeshan Anwar
Software Mentions: 4
Published: almost 4 years ago

10.1038/srep27905

A general method for parameter estimation in light-response models
Cited by: 2
Author(s): Lei Chen, Zhongbin Li, Cang Hui, Xiaofei Cheng, Bai-Lian Li, Peijian Shi
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-8-446

Novel definition files for human GeneChips based on GeneAnnot
Cited by: 110
Author(s): Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sérgio Ferrari, Doron Lancet, Gian Antonio Danieli, Silvio Bicciato
Software Mentions: 4
Published: about 17 years ago

10.1186/s12859-021-04138-z

Dynamic model updating (DMU) approach for statistical learning model building with missing data
Cited by: 3
Author(s): Richa Jain, Wei Xu
Software Mentions: 4
Published: over 3 years ago

10.3390/s21030772

Multi-Layer Blockchain-Based Security Architecture for Internet of Things
Cited by: 58
Author(s): Houshyar Honar Pajooh, M. A. Rashid, Fakhrul Alam, Serge Demidenko
Software Mentions: 4
Published: almost 4 years ago

10.1093/g3journal/jkaa061

Gene-level quantitative trait mapping in Caenorhabditis elegans
Cited by: 16
Author(s): Luke M. Noble, Matthew V. Rockman, Henrique Teotónio
Software Mentions: 4
Published: almost 4 years ago

10.1186/gb-2010-11-2-r14

Gene ontology analysis for RNA-seq: accounting for selection bias
Cited by: 4,920
Author(s): Matthew D. Young, Matthew J. Wakefield, Gordon K. Smyth, Alicia Oshlack
Software Mentions: 4
Published: almost 15 years ago

10.3389/fchem.2019.00707

A New Genetic Algorithm Approach Applied to Atomic and Molecular Cluster Studies
Cited by: 19
Author(s): Frederico Teixeira Silva, M. X. Silva, Jadson C. Belchior
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.1001446

Reconstruction of Ancestral Metabolic Enzymes Reveals Molecular Mechanisms Underlying Evolutionary Innovation through Gene Duplication
Cited by: 168
Author(s): Karin Voordeckers, Chris A. Brown, Kevin Vanneste, Elisa van der Zande, Arnout Voet, Steven Maere, Kevin J. Verstrepen
Software Mentions: 4
Published: almost 12 years ago

10.1186/gb-2011-12-3-r27

A genome-wide view of mutation rate co-variation using multivariate analyses
Cited by: 38
Author(s): Guruprasad Ananda, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 4
Published: almost 14 years ago

10.1371/journal.pone.0082189

Colonisation and Diversification of the Zenaida Dove (Zenaida aurita) in the Antilles: Phylogeography, Contemporary Gene Flow and Morphological Divergence
Cited by: 13
Author(s): Karine Monceau, Frank Cézilly, Jérôme Moreau, Sébastien Motreuil, Rémi A. Wattier
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0166721

A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing
Cited by: 3
Author(s): Chuan-Kang Ting, Chun-Shin Lin, Ming-Tsai Chan, Jeremy J.W. Chen, Sheng-Yu Chuang, Yao‐Ting Huang
Software Mentions: 4
Published: about 8 years ago

10.1186/1752-0509-4-159

Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithms and graphical Gaussian models
Cited by: 6
Author(s): Dietrich Trümbach, Cornelia Graf, Benno Pütz, Claudia Kühne, Marcus Panhuysen, Peter Weber, Florian Holsboer, Wolfgang Wurst, Gerhard Welzl, Jan M. Deussing
Software Mentions: 4
Published: about 14 years ago

10.1074/mcp.RA120.002275

On the Robustness of Graph-Based Clustering to Random Network Alterations
Cited by: 7
Author(s): R. Greg Stacey, Michael A. Skinnider, Leonard J. Foster
Software Mentions: 4
Published: almost 4 years ago

10.1534/g3.120.401053

Mutations in a Novel Cadherin Gene Associated with Bt Resistance in Helicoverpa zea
Cited by: 14
Author(s): Megan L. Fritz, Schyler O. Nunziata, Ruifeng Guo, Bruce E. Tabashnik, Yves Carrière
Software Mentions: 4
Published: over 4 years ago

10.1107/S205979831801570X

Choosing your (Friedel) mates wisely: grouping data sets to improve anomalous signal
Cited by: 6
Author(s): Nicolas Foos, Michele Cianci, Max H. Nanao
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes10090672

PredLnc-GFStack: A Global Sequence Feature Based on a Stacked Ensemble Learning Method for Predicting lncRNAs from Transcripts
Cited by: 20
Author(s): Shuai Liu, Xiaohan Zhao, Guangyan Zhang, Weiyang Li, Feng Liu, Shichao Liu, Wen Zhang
Software Mentions: 4
Published: about 5 years ago

10.1186/1472-6807-9-71

Splitting statistical potentials into meaningful scoring functions: Testing the prediction of near-native structures from decoy conformations
Cited by: 9
Author(s): Patrick Aloy, Baldo Oliva
Software Mentions: 4
Published: almost 16 years ago

10.1186/1471-2164-9-S2-S17

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain
Cited by: 15
Author(s): Heng Huang, Nha Nguyen, S. Oraintara, An Vo
Software Mentions: 4
Published: almost 17 years ago

10.1186/1471-2105-15-136

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics
Cited by: 133
Author(s): José A. Egea, David Henriques, Thomas Cokelaer, Alejandro F. Villaverde, Aidan MacNamara, Diana-Patricia Danciu, Julio R. Banga, Julio Sáez-Rodríguez
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0159923

BiCAMWI: A Genetic-Based Biclustering Algorithm for Detecting Dynamic Protein Complexes
Cited by: 8
Author(s): Amir Lakizadeh, Saeed Jalili
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-017-3622-9

RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle
Cited by: 73
Author(s): Mohd Shukor Salleh, Gianluca Mazzoni, Johanna Höglund, D.W. Olijhoek, Peter Lund, Peter Løvendahl, Haja N. Kadarmideen
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.4535

Reference gene selection for qRT-PCR assays inStellera chamaejasmesubjected to abiotic stresses and hormone treatments based on transcriptome datasets
Cited by: 18
Author(s): Xin Liu, Hongwei Guan, Min Jae Song, Yànpíng Fù, Xiao Han, Lei Meng, Jingyu Ren, Bin Guo, Wei He, Yahui Wei
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0250665

Application of machine learning and genetic optimization algorithms for modeling and optimizing soybean yield using its component traits
Cited by: 28
Author(s): Mohsen Yoosefzadeh-Najafabadi, Dan Tulpan, Milad Eskandari
Software Mentions: 4
Published: over 3 years ago

10.3390/s20185440

A Modified Genetic Algorithm with Local Search Strategies and Multi-Crossover Operator for Job Shop Scheduling Problem
Cited by: 28
Author(s): Monique Simplicio Viana, Orides Morandin, Rodrigo Colnago Contreras
Software Mentions: 3
Published: about 4 years ago

10.3390/s20102990

IoT-Blockchain Enabled Optimized Provenance System for Food Industry 4.0 Using Advanced Deep Learning
Cited by: 129
Author(s): Prince Waqas Khan, Yung-Cheol Byun, Namje Park
Software Mentions: 3
Published: over 4 years ago

10.3390/s20144036

EAGA-MLP—An Enhanced and Adaptive Hybrid Classification Model for Diabetes Diagnosis
Cited by: 109
Author(s): Sushruta Mishra, Hrudaya Kumar Tripathy, Pradeep Kumar Mallick, Akash Kumar Bhoi, Paolo Barsocchi
Software Mentions: 3
Published: over 4 years ago

10.3390/s18061950

An Optimization Routing Algorithm for Green Communication in Underground Mines
Cited by: 3
Author(s): Heng Xu, Qiyue Li, Jianping Wang, Guangheng Luo, Chengfeng Zhu, Wei Sun
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-014-0404-0

ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs
Cited by: 12
Author(s): Christina Otto, Mathias Möhl, Steffen Heyne, Mika Amit, Gad M. Landau, Rolf Backofen, Sebastian Will
Software Mentions: 3
Published: almost 10 years ago

10.3390/s140100283

Fault Detection of Roller-Bearings Using Signal Processing and Optimization Algorithms
Cited by: 18
Author(s): Dae-Ho Kwak, Lee Donghan, Jong-Hyo Ahn, Bong-Hwan Koh
Software Mentions: 3
Published: almost 11 years ago

10.3390/s19122768

SAW Torque Sensor Gyroscopic Effect Compensation by Least Squares Support Vector Machine Algorithm Based on Chaos Estimation of Distributed Algorithm
Cited by: 4
Author(s): Wei Han, Xiongzhu Bu, Yihan Cao, Miaomiao Xu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-30845-4

Topological motifs populate complex networks through grouped attachment
Cited by: 4
Author(s): Jae Young Choi, Doheon Lee
Software Mentions: 3
Published: about 6 years ago

10.1038/srep26853

Mitogenomics of southern hemisphere blue mussels (Bivalvia: Pteriomorphia): Insights into the evolutionary characteristics of the Mytilus edulis complex
Cited by: 45
Author(s): Juan Diego Gaitán‐Espitía, Roberto F. Nespolo, Andrés Mesas, Guillermo D’Elı́a
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-57432-w

Distribution Optimization: An evolutionary algorithm to separate Gaussian mixtures
Cited by: 14
Author(s): F. Javier Lerch, Alfred Ultsch, Jörn Lötsch
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13321-017-0254-7

HawkRank: a new scoring function for protein–protein docking based on weighted energy terms
Cited by: 45
Author(s): Ting Feng, Chen Fu, Yu Kang, Huiyong Sun, Hui Liu, Dan Li, Feng Zhu, Tingjun Hou
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-21840-w

Transcription Factor Target Gene Network governs the Logical Abstraction Analysis of the Synthetic Circuit in Leishmaniasis
Cited by: 4
Author(s): Milsee Mol, Dipali Kosey, Ramanamurthy Boppana, Shailza Singh
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.0030169

A Numerical Approach to Ion Channel Modelling Using Whole-Cell Voltage-Clamp Recordings and a Genetic Algorithm
Cited by: 70
Author(s): Meron Gurkiewicz, Alon Korngreen
Software Mentions: 3
Published: about 17 years ago

10.1371/journal.pcbi.1005728

Population FBA predicts metabolic phenotypes in yeast
Cited by: 18
Author(s): Piyush Labhsetwar, Marcelo C.R. Melo, John A. Cole, Zaida Luthey‐Schulten
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pcbi.1003216

Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization
Cited by: 29
Author(s): Rudi Agius, Mieczyslaw Torchala, Iain H. Moal, Juan Fernández‐Recio, Paul A. Bates
Software Mentions: 3
Published: about 11 years ago

10.1186/1471-2105-15-88

Multi-model inference using mixed effects from a linear regression based genetic algorithm
Cited by: 1
Author(s): Koen Van der Borght, Geert Verbeke, Herman van Vlijmen
Software Mentions: 3
Published: over 10 years ago

10.1186/s12859-018-2172-8

Comparison of metaheuristics to measure gene effects on phylogenetic supports and topologies
Cited by: 1
Author(s): Régis Garnier, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Bashar Al-Nuaimi, Bassam AlKindy
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2164-15-255

Genome-wide variations in a natural isolate of the nematode Caenorhabditis elegans
Cited by: 19
Author(s): Ismael A. Vergara, Maja Tarailo‐Graovac, Christian Frech, Jun Wang, Zhaozhao Qin, Ting Zhang, Rong She, Jeffrey Shih-Chieh Chu, Ke Wang, Nansheng Chen
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj-cs.370

An integrated cuckoo search optimizer for single and multi-objective optimization problems
Cited by: 3
Author(s): Xiangbo Qi, Zhaohui Yuan, Yan Song
Software Mentions: 3
Published: over 3 years ago

10.1186/s13321-016-0182-y

A novel applicability domain technique for mapping predictive reliability across the chemical space of a QSAR: reliability-density neighbourhood
Cited by: 37
Author(s): Natália Aniceto, Alex A. Freitas, Andreas Bender, Taravat Ghafourian
Software Mentions: 3
Published: almost 8 years ago

10.3390/s20164455

Energy-Efficient UAVs Deployment for QoS-Guaranteed VoWiFi Service
Cited by: 10
Author(s): Vicente López-Ibor Mayor, Rafael Estepa, Antonio Estepa, Germán Madinabeitia
Software Mentions: 3
Published: over 4 years ago

10.1038/srep10930

Soil type recognition as improved by genetic algorithm-based variable selection using near infrared spectroscopy and partial least squares discriminant analysis
Cited by: 19
Author(s): Huaming Xie, Jinsong Zhao, Qiubing Wang, Yueyu Sui, Jingkuan Wang, Xueming Yang, Xudong Zhang, Chao Liang
Software Mentions: 3
Published: over 9 years ago

10.4049/jimmunol.1401980

Definition of the Cattle Killer Cell Ig–like Receptor Gene Family: Comparison with Aurochs and Human Counterparts
Cited by: 26
Author(s): Nicholas D. Sanderson, Paul J. Norman, Lisbeth A. Guethlein, Shirley A. Ellis, Christina L. Williams, Matthew Breen, Steven D. E. Park, David A. Magee, Farbod Babrzadeh, Andrew Warry, Michael Watson, Daniel G. Bradley, David E. MacHugh, Peter Parham, John A. Hammond
Software Mentions: 3
Published: almost 10 years ago

10.3390/genes12010028

Feature Selection for Topological Proximity Prediction of Single-Cell Transcriptomic Profiles in Drosophila Embryo Using Genetic Algorithm
Cited by: 4
Author(s): Shruti Gupta, Ajay Verma, Shandar Ahmad
Software Mentions: 3
Published: almost 4 years ago

10.1534/g3.119.401016

Genome-Wide Association Analyses Reveal Genomic Regions Controlling Canopy Wilting in Soybean
Cited by: 14
Author(s): Clinton J. Steketee, William T. Schapaugh, Thomas E. Carter, Zenglu Li
Software Mentions: 3
Published: over 4 years ago

10.3389/fpsyg.2016.00189

Using Genetic Algorithms in a Large Nationally Representative American Sample to Abbreviate the Multidimensional Experiential Avoidance Questionnaire
Cited by: 47
Author(s): Baljinder K. Sahdra, Joseph Ciarrochi, Philip D. Parker, Luca Scrucca
Software Mentions: 3
Published: over 8 years ago

10.3389/fneur.2021.622719

Artifact Reduction in Simultaneous EEG-fMRI: A Systematic Review of Methods and Contemporary Usage
Cited by: 29
Author(s): Madeleine Bullock, Graeme D. Jackson, David F. Abbott
Software Mentions: 3
Published: over 3 years ago

10.1534/g3.118.200443

Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea
Cited by: 23
Author(s): David Kainer, Eric A. Stone, Amanda Padovan, William J. Foley, Carsten Külheim
Software Mentions: 3
Published: over 6 years ago

10.3389/fbioe.2019.00331

Investigation of Channel Selection for Gesture Classification for Prosthesis Control Using Force Myography: A Case Study
Cited by: 12
Author(s): Chakaveh Ahmadizadeh, Brittany Pousett, Carlo Menon
Software Mentions: 3
Published: almost 5 years ago

10.3390/e23070874

A Comparative Study of Common Nature-Inspired Algorithms for Continuous Function Optimization
Cited by: 26
Author(s): Zhenwu Wang, Chao Qin, Benting Wan, William Wei Song
Software Mentions: 3
Published: over 3 years ago

10.1155/2016/9063065

Training Feedforward Neural Networks Using Symbiotic Organisms Search Algorithm
Cited by: 55
Author(s): Haizhou Wu, Yongquan Zhou, Qifang Luo, Mohamed Abdel Basset
Software Mentions: 3
Published: almost 9 years ago

10.1007/s41109-016-0007-y

Comparison method for community detection on brain networks from neuroimaging data
Cited by: 18
Author(s): Fumihiko Taya, Joshua de Souza, Nitish V. Thakor, Anastasios Bezerianos
Software Mentions: 3
Published: over 8 years ago

10.3390/pathogens10060661

Epidemiology, Genetic Characterization, and Evolution of Hunnivirus Carried by Rattus norvegicus and Rattus tanezumi: The First Epidemiological Evidence from Southern China
Cited by: 5
Author(s): Minyi Zhang, Qiushuang Li, Fei Wu, Zejin Ou, Yongzhi Li, Fang-Fei You, Qing Chen
Software Mentions: 3
Published: over 3 years ago

10.1155/2015/193406

Genetic Programming Based Ensemble System for Microarray Data Classification
Cited by: 17
Author(s): Kun Hong Liu, Muchenxuan Tong, Shu Tong Xie, Vincent Ng
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12862-016-0670-8

Holding it together: rapid evolution and positive selection in the synaptonemal complex of Drosophila
Cited by: 21
Author(s): Lucas W. Hemmer, Justin P. Blumenstiel
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0029450

Global Analysis of DNA Methylation by Methyl-Capture Sequencing Reveals Epigenetic Control of Cisplatin Resistance in Ovarian Cancer Cell
Cited by: 67
Author(s): Wei Yu, Chengmeng Jin, Xiaoyan Lou, Xu Han, Lisha Li, Yinghua He, Hongyu Zhang, Kelong Ma, Jingde Zhu, Li-Hua Cheng, Biaoyang Lin
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0232103

Improving predictive models for Alzheimer’s disease using GWAS data by incorporating misclassified samples modeling
Cited by: 18
Author(s): Brissa-Lizbeth Romero-Rosales, Jose-Gerardo Tamez-Peña, Humberto Nicolini, Maria-Guadalupe Moreno-Treviño, Víctor Treviño
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0079612

Comparative Transcriptome Analysis of Salivary Glands of Two Populations of Rice Brown Planthopper, Nilaparvata lugens, That Differ in Virulence
Cited by: 74
Author(s): Rui Ji, Haixin Yu, Qiang Fu, Hongdan Chen, Wenfeng Ye, Shaohui Li, Yonggen Lou
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0122209

Folate Receptor-α (FOLR1) Expression and Function in Triple Negative Tumors
Cited by: 97
Author(s): Brian M. Necela, Jennifer A. Crozier, Cathy A. Andorfer, Laura J. Lewis‐Tuffin, Jennifer M. Kachergus, Xochiquetzal J. Geiger, Krishna R. Kalari, Daniel J. Serie, Zhifu Sun, Alvaro Moreno Aspita, Daniel J. O’Shannessy, Julia D. Maltzman, Ann E. McCullough, Barbara A. Pockaj, Heather E. Cunliffe, Karla V. Ballman, E. Aubrey Thompson, Edith A. Perez
Software Mentions: 3
Published: over 9 years ago

10.1155/2019/9864213

A Wrapper Feature Subset Selection Method Based on Randomized Search and Multilayer Structure
Cited by: 12
Author(s): Yifei Mao, Yuansheng Yang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-017-3495-y

Active module identification in intracellular networks using a memetic algorithm with a new binary decoding scheme
Cited by: 4
Author(s): Dong Li, Zhisong Pan, Guyu Hu, Zexuan Zhu, Shan He
Software Mentions: 3
Published: over 7 years ago

10.1186/s12918-018-0637-z

Systems biology analysis reveals new insights into invasive lung cancer
Cited by: 2
Author(s): Dan Li, William Yang, Carolyn Arthur, Jun S. Liu, Carolina Cruz-Niera, Mary Qu Yang
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0004012

Comparing Platforms for C. elegans Mutant Identification Using High-Throughput Whole-Genome Sequencing
Cited by: 43
Author(s): Yufeng Shen, Sumeet Sarin, Ye Liu, Oliver Hobert, Itsik Pe’er
Software Mentions: 3
Published: almost 16 years ago

10.1093/braincomms/fcaa053

Identification of a potential non-coding RNA biomarker signature for amyotrophic lateral sclerosis
Cited by: 27
Author(s): Greig Joilin, Elizabeth Gray, Alexander G. Thompson, Yoana Bobeva, Kevin Talbot, Jochen H. Weishaupt, Albert C. Ludolph, Andrea Malaspina, P. Nigel Leigh, Sarah F. Newbury, Martin R. Turner, Majid Hafezparast
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-015-2111-2

Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome
Cited by: 15
Author(s): Christelle Robert, Ronan Kapétanovic, Dario Beraldi, Michael Watson, Alan Archibald, David Hume
Software Mentions: 3
Published: about 9 years ago

10.1155/2018/7690435

A Water-Area Recognition Approach Based on “Tuned” Texture Mask and Cuckoo Search Algorithm
Cited by: 4
Author(s): Zhongwei Chen, Kangbo Peng, Hong‐Jian Lai, Yichao Wang, Xiaolong Wu, Zhifeng Xiao
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12874-021-01356-0

Modeling of atrophy size trajectories: variable transformation, prediction and age-of-onset estimation
Cited by: 0
Author(s): Charlotte Behning, Monika Fleckenstein, Maximilian Pfau, Christine Adrion, Lukas Goerdt, Moritz Lindner, Steffen Schmitz-Valckenberg, Frank G. Holz, Matthias Schmid
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-16-S18-S1

An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression
Cited by: 24
Author(s): Luke Vandewater, Vladimir Brusic, William J. Wilson, Lance Macaulay, Ping Zhang
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2105-9-203

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Cited by: 39
Author(s): Yuji Zhang, Jianhua Xuan, Benildo G. de los Reyes, Robert Clarke, Habtom W. Ressom
Software Mentions: 3
Published: over 16 years ago

10.1371/journal.pone.0073514

Identifying the Genome-Wide Sequence Variations and Developing New Molecular Markers for Genetics Research by Re-Sequencing a Landrace Cultivar of Foxtail Millet
Cited by: 59
Author(s): Hui Bai, Yinghao Cao, J. Z. Quan, Lü Dong, Zhiyong Li, Yanbin Zhu, Lihuang Zhu, Zimei Dong, Dayong Li
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0149921

Surface Reconstruction from Parallel Curves with Application to Parietal Bone Fracture Reconstruction
Cited by: 8
Author(s): Abdul Majeed, Abd Rahni Mt Piah, Zainor Ridzuan Yahya
Software Mentions: 3
Published: over 8 years ago

10.3390/molecules23112892

In Silico Prediction of O6-Methylguanine-DNA Methyltransferase Inhibitory Potency of Base Analogs with QSAR and Machine Learning Methods
Cited by: 23
Author(s): Guizhi Sun, Ting Fan, Xiaodong Sun, Yuxing Hao, Xin Cui, Lu Zhao, Tongxiang Ren, Yue Zhou, Rugang Zhong, Yongzhen Peng
Software Mentions: 3
Published: about 6 years ago

10.1186/s12859-016-1415-9

Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data
Cited by: 192
Author(s): Wen Zhang, Yanlin Chen, Feng Liu, Fei Luo, Gang Tian, Xiaohong Li
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0210786

Complex harmonic regularization with differential evolution in a memetic framework for biomarker selection
Cited by: 6
Author(s): Sai Wang, Haiwei Shen, Hua Chai, Yong Liang
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0117988

DWFS: A Wrapper Feature Selection Tool Based on a Parallel Genetic Algorithm
Cited by: 88
Author(s): Othman Soufan, Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajic
Software Mentions: 3
Published: over 9 years ago

10.14814/phy2.15031

Sex differences in skeletal muscle revealed through fiber type, capillarity, and transcriptomics profiling in mice
Cited by: 11
Author(s): Juliana O’Reilly, Kikumi D. Ono‐Moore, Sree V. Chintapalli, Jennifer Rutkowsky, Todd Tolentino, Kevin C K Lloyd, I. Mark Olfert, Sean H. Adams
Software Mentions: 3
Published: about 3 years ago

10.1155/2016/8179670

A “Tuned” Mask Learnt Approach Based on Gravitational Search Algorithm
Cited by: 5
Author(s): Youchuan Wan, Mingwei Wang, Zhiwei Ye, Xudong Lai
Software Mentions: 3
Published: almost 9 years ago

10.1186/gb-2012-13-5-r34

A new approach for detecting low-level mutations in next-generation sequence data
Cited by: 87
Author(s): Mingkun Li, Mark Stoneking
Software Mentions: 3
Published: almost 13 years ago

10.3390/ijerph17041189

Using Machine-Learning Algorithms for Eutrophication Modeling: Case Study of Mar Menor Lagoon (Spain)
Cited by: 31
Author(s): Patricia Jimeno‐Sáez, Javier Senent‐Aparicio, José M. Cecilia, Julio Pérez‐Sánchez
Software Mentions: 3
Published: almost 5 years ago

Projects: cran: GA

Papers Mentioning GA 1,091