cran: FactoMineR | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0206361

Genetic diversity assessed by genotyping by sequencing (GBS) and for phenological traits in blueberry cultivars
Cited by: 19
Author(s): Ana Čampa, Juan José Ferreira Fernández
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2014.00010

Phenolic content variability and its chromosome location in tritordeum
Cited by: 16
Author(s): José F. Navas-Lopez, Francisco J. Ostos-Garrido, A. M. Castillo, A. Martı́n, María J. Giménez, Fernando Pistón
Software Mentions: 4
Published: almost 11 years ago

10.3390/s21175804

Non-Destructive Identification of Naturally Aged Alfalfa Seeds via Multispectral Imaging Analysis
Cited by: 8
Author(s): Xuemeng Wang, Han Zhang, Rui Song, Xin He, Peisheng Mao, Shangang Jia
Software Mentions: 4
Published: about 3 years ago

10.18632/aging.202400

A DNA methylation age predictor for zebrafish
Cited by: 27
Author(s): Benjamin Mayne, Darren Korbie, Lisa M Kenchington, Ben J Ezzy, Oliver Berry, Simon Jarman
Software Mentions: 4
Published: almost 4 years ago

10.3389/fspor.2020.00109

The Impact of Recovery Practices Adopted by Professional Tennis Players on Fatigue Markers According to Training Type Clusters
Cited by: 5
Author(s): Mathilde Poignard, Gaël Guilhem, Quentin De Larochelambert, Bernard Montalvan, François Bieuzen
Software Mentions: 4
Published: about 4 years ago

10.3390/metabo11060378

Metabolomic Characterization of Commercial, Old, and Red-Fleshed Apple Varieties
Cited by: 12
Author(s): Adriana Teresa Ceci, Michele Bassi, Walter Guerra, Michael Oberhuber, Peter Robatscher, Fulvio Mattivi, Pietro Franceschi
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0117667

Genetic and Genomic Diversity Studies of Acacia Symbionts in Senegal Reveal New Species of Mesorhizobium with a Putative Geographical Pattern
Cited by: 20
Author(s): Fatou Diouf, Diégane Diouf, Agnieszka Klonowska, Antoine Le Quéré, Niokhor Bakhoum, Dioumacor Fall, Marc Neyra, Hugues Parrinello, M. Diouf, Ibrahima Ndoye, Lionel Moulin
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-021-92953-y

Genetic diversity of Colletotrichum lupini and its virulence on white and Andean lupin
Cited by: 14
Author(s): Joris Alkemade, Monika Messmer, Ralf T. Voegele, Maria R. Finckh, Pierre Hohmann
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-019-6235-7

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
Cited by: 5
Author(s): Claire Khosravi, Joanna E. Kowalczyk, Tania Chroumpi, Evy Battaglia, María Victoria Aguilar Pontes, Mao Peng, Ad Wiebenga, Vivian Ng, Anna Lipzen, Guifen He, Diane Bauer, Igor V. Grigoriev, Ronald P. de Vries
Software Mentions: 4
Published: about 5 years ago

10.3390/metabo10010035

Metabolomic Profiling of Fungal Pathogens Responsible for Root Rot in American Ginseng
Cited by: 23
Author(s): Natasha DesRochers, Jacob P. Walsh, Justin B. Renaud, Keith A. Seifert, Ken K.‐C. Yeung, Mark W. Sumarah
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-015-2165-1

An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum
Cited by: 12
Author(s): Geoffrey H. Siwo, Roger S. Smith, Aiping Tan, Katrina A. Button-Simons, Lisa A. Checkley, Michael T. Ferdig
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2021.650400

Characterization and Mapping of Spot Blotch in Triticum durum–Aegilops speltoides Introgression Lines Using SNP Markers
Cited by: 6
Author(s): Jashanpreet Kaur, Jaspal Kaur, G. S. Dhillon, Harmandeep Kaur, Jasvir Singh, Ritu Bala, Puja Srivastava, Satinder Kaur, Achla Sharma, Parveen Chhuneja
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2020.620832

Microcutting Redox Profile and Anatomy in Eucalyptus spp. With Distinct Adventitious Rooting Competence
Cited by: 9
Author(s): Johnatan Vilasboa, Cibele Tesser da Costa, Leonardo Girardi Ransan, Jorge Ernesto de Araújo Mariath, Arthur Germano Fett-Neto
Software Mentions: 4
Published: almost 4 years ago

10.3390/md18020078

Metabolomic Insights into Marine Phytoplankton Diversity
Cited by: 17
Author(s): Rémy Marcellin-Gros, Gwenaël Piganeau, Didier Stien
Software Mentions: 4
Published: almost 5 years ago

10.3389/fphys.2018.00019

Comparison of Fatty Acid and Gene Profiles in Skeletal Muscle in Normal and Obese C57BL/6J Mice before and after Blunt Muscle Injury
Cited by: 6
Author(s): Jens-Uwe Werner, Klaus Tödter, Pengfei Xu, Lydia Lockhart, Markus Jähnert, Pascal Gottmann, Annette Schürmann, Ludger Scheja, Martin Wabitsch, Uwe Knippschild
Software Mentions: 4
Published: almost 7 years ago

10.3758/s13414-020-02195-9

Listener characteristics differentially affect self-reported and physiological measures of effort associated with two challenging listening conditions
Cited by: 18
Author(s): Alexander L. Francis, Tessa Bent, Jennifer Schumaker, Jordan Love, Noah H. Silbert
Software Mentions: 4
Published: almost 4 years ago

10.3389/fphys.2018.00674

Diet-Induced Obesity Affects Muscle Regeneration After Murine Blunt Muscle Trauma—A Broad Spectrum Analysis
Cited by: 19
Author(s): Pengfei Xu, Jens-Uwe Werner, Sebastian Milerski, Carmen M. Hamp, Tatjana Kuzenko, Markus Jähnert, Pascal Gottmann, Luisa de Roy, Daniela Warnecke, Alireza Abaei, Annette Palmer, Markus Huber‐Lang, Lutz Dürselen, Volker Rasche, Annette Schürmann, Martin Wabitsch, Uwe Knippschild
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-92507-2

The in-utero experience of piglets born from sows with lameness shapes their life trajectory
Cited by: 8
Author(s): Marisol Parada Sarmiento, Thiago Bernardino, Patrícia Tatemoto, Gina Polo, Adroaldo José Zanella
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-80093-8

An enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
Cited by: 20
Author(s): Manjot S Virdee, Nipun Saini, Colin D. Kay, Andrew P. Neilson, Sze Ting Cecilia Kwan, Kaylee K. Helfrich, Sandra M. Mooney, Susan Smith
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12864-021-07902-w

Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae
Cited by: 16
Author(s): Jan Hendrik Nagel, Michael J. Wingfield, Bernard Slippers
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0237741

A step towards Balkan Capsicum annuum L. core collection: Phenotypic and biochemical characterization of 180 accessions for agronomic, fruit quality, and virus resistance traits
Cited by: 17
Author(s): Amol N. Nankar, Velichka Todorova, Ivanka Tringovska, Gancho Pasev, Vesela Radeva-Ivanova, Valentina Ivanova, D. Kostova
Software Mentions: 4
Published: over 4 years ago

10.1093/ve/veaa073

Population structure of Cydia pomonella granulovirus isolates revealed by quantitative analysis of genetic variation
Cited by: 9
Author(s): Jiangbin Fan, Johannes A. Jehle, Jörg T. Wennmann
Software Mentions: 4
Published: about 4 years ago

10.1002/ece3.7158

Among‐individual diet variation within a lake trout ecotype: Lack of stability of niche use
Cited by: 4
Author(s): Louise Chavarie, Kimberly L. Howland, Les N. Harris, Colin P. Gallagher, Michael J. Hansen, William M. Tonn, Andrew M. Muir, Charles C. Krueger
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-021-92912-7

MYD88, NFKB1, and IL6 transcripts overexpression are associated with poor outcomes and short survival in neonatal sepsis
Cited by: 12
Author(s): Nouran B. AbdAllah, Eman A. Toraih, Essam Al Ageeli, Hala F. Elhagrasy, Nawal S. Gouda, Manal S. Fawzy, Ghada M. Helal
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009448

Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen
Cited by: 27
Author(s): Mareike Möller, Michael Habig, Cécile Lorrain, Alice Feurtey, Janine Haueisen, Wagner C. Fagundes, A. Alizadeh, Michael Freitag, Eva H. Stukenbrock
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1007496

Recurrent somatic mutations reveal new insights into consequences of mutagenic processes in cancer
Cited by: 15
Author(s): Miranda D. Stobbe, Gian Andri Thun, Andrea Diéguez-Docampo, Meritxell Oliva, Justin P. Whalley, Emanuele Raineri, Marta Gut
Software Mentions: 4
Published: almost 5 years ago

10.3389/fneur.2020.575953

Cerebrovascular Senescence Is Associated With Tau Pathology in Alzheimer's Disease
Cited by: 39
Author(s): Annie Bryant, Miwei Hu, Becky C. Carlyle, Steven E. Arnold, Matthew P. Frosch, Sudeshna Das, Bradley T. Hyman, Rachel E. Bennett
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1006937

Exon level machine learning analyses elucidate novel candidate miRNA targets in an avian model of fetal alcohol spectrum disorder
Cited by: 9
Author(s): Abrar E. Al‐Shaer, George R. Flentke, Mark E. Berres, Ana Garic, Susan Smith
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-75088-4

Disentangling etiologies of CNS infections in Singapore using multiple correspondence analysis and random forest
Cited by: 5
Author(s): Raphaël M. Zellweger, Sophie Yacoub, Yvonne Chan, Derek Soon, Humaira Shafi, Say Tat Ooi, Mónica Chan, Leslie Jacobson, October M. Sessions, Angela Vincent, Jenny Guek Hong Low, Eng Eong Ooi, Lin‐Fa Wang, Limin Wijaya, Kevin Tan, Singapore Neurologic Infections Program
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0236548

Techno-functional and 3D shape analysis applied for investigating the variability of backed tools in the Late Middle Paleolithic of Central Europe
Cited by: 16
Author(s): Davide Delpiano, Thorsten Uthmeier
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.02494

Altered Gut Microbiota and Compositional Changes in Firmicutes and Proteobacteria in Mexican Undernourished and Obese Children
Cited by: 90
Author(s): Eder Orlando Méndez-Salazar, Marı́a Guadalupe Ortiz-López, Marı́a de los Ángeles Granados-Silvestre, Berenice Palacios‐González, Mészáros Márta
Software Mentions: 4
Published: about 6 years ago

10.3390/plants10071432

Differential Responses of Antioxidative System during the Interaction of Soursop Fruits (Annona muricata L.) and Nectria haematococca at Postharvest Storage
Cited by: 6
Author(s): Alejandro Rubio-Melgarejo, Rosendo Balois-Morales, Verónica Alhelí Ochoa-Jiménez, Paloma Patricia Casas-Junco, José Orlando Jiménez-Zurita, Pedro Ulises Bautista-Rosales, Guillermo Berúmen-Varela
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-65535-7

Liver colour scoring index, carotenoids and lipid content assessment as a proxy for lumpfish (Cyclopterus lumpus L.) health and welfare condition
Cited by: 15
Author(s): Kirstin Eliasen, Esbern J. Patursson, Bruce J. McAdam, Enrique J. del Pino, Bernat Morro, Mónica B. Betancor, Johanna L. Baily, Sónia Rey
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-020-07280-9

The micro-RNA content of unsorted cryopreserved bovine sperm and its relation to the fertility of sperm after sex-sorting
Cited by: 19
Author(s): Esin Keles, Eleni Malama, Siyka Bozukova, Mathias Siuda, Sarah Wyck, Ulrich Witschi, Stefan Bauersachs, Heinrich Bollwein
Software Mentions: 4
Published: almost 4 years ago

10.3390/plants10040769

Transcriptome Analysis of Needle and Root of Pinus Massoniana in Response to Continuous Drought Stress
Cited by: 10
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang, Qiao Li, Jie Ran
Software Mentions: 4
Published: over 3 years ago

10.1093/aobpla/plaa047

Difference between emergent aquatic and terrestrial monocotyledonous herbs in relation to the coordination of leaf stomata with vein traits
Cited by: 6
Author(s): Wanli Zhao, Pei‐Li Fu, Guolan Liu, Ping Zhao
Software Mentions: 4
Published: about 4 years ago

10.1155/2021/5585586

Epi-Gene: An R-Package for Easy Pan-Genome Analysis
Cited by: 1
Author(s): Furqan Awan, Muhammad Muddassir Ali, Muhammad Hamid, Muhammad Huzair Awan, Muhammad Mushtaq, Saeeda Kalsoom, Muhammad Ijaz, Khalid Mehmood, Yongjie Liu
Software Mentions: 4
Published: about 3 years ago

10.3389/fcell.2021.648925

Multi-Factor Clustering Incorporating Cell Motility Predicts T Cell Expansion Potential
Cited by: 1
Author(s): Joanne H. Lee, Shuai Shao, Michelle Kim, Stacey M. Fernandes, Jennifer R. Brown, Lance C. Kam
Software Mentions: 4
Published: over 3 years ago

10.3390/plants9121809

Physico-Chemical Characteristics and Culturable Microbial Communities of Grape Berries Change Strongly during Noble Rot Development
Cited by: 3
Author(s): Júlia Hegyi-Kaló, Ádám István Hegyi, József Geml, Zsolt Zsófi, Xénia Pálfi, Kálmán Zoltán Váczy
Software Mentions: 4
Published: almost 4 years ago

10.1093/aobpla/plaa012

The climatic association of population divergence and future extinction risk of Solanum pimpinellifolium
Cited by: 8
Author(s): Ya‐Ping Lin, Cheng-Yueh Lu, Cheng‐Ruei Lee
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-77382-7

Warming and leaf litter functional diversity, not litter quality, drive decomposition in a freshwater ecosystem
Cited by: 13
Author(s): Gustavo H. Migliorini, Gustavo Q. Romero
Software Mentions: 4
Published: almost 4 years ago

10.3390/s20247192

Retrieval of Hyperspectral Information from Multispectral Data for Perennial Ryegrass Biomass Estimation
Cited by: 2
Author(s): Gustavo Togeiro de Alckmin, Lammert Kooistra, RP Rawnsley, S. de Bruin, Arko Lucieer
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13007-020-00657-7

3D characterization of walnut morphological traits using X-ray computed tomography
Cited by: 9
Author(s): Anthony Bernard, Sherif Hamdy, Laurence Le Corre, Elisabeth Dirlewanger, Fabrice Lheureux
Software Mentions: 3
Published: about 4 years ago

10.3390/biology10060518

2La Paracentric Chromosomal Inversion and Overexpressed Metabolic Genes Enhance Thermotolerance and Pyrethroid Resistance in the Major Malaria Vector Anopheles gambiae
Cited by: 3
Author(s): Sulaiman S. Ibrahim, Muhammad Mahmood Mukhtar, Abdullahi Muhammad, Charles S. Wondji
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-48611-5

Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids
Cited by: 40
Author(s): Yuxiang Bai, Ge Wang, Ya-Dong Cheng, Puyou Shi, Chengcui Yang, Heng Yang, Zhaoli Xu
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2018.03208

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell
Cited by: 11
Author(s): Binbin Liu, Xiaojun Zhang, Lars R. Bakken, Lars-Gustav Snipen, Åsa Frostegård
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-53200-7

Optimization of culture conditions for the expression of three different insoluble proteins in Escherichia coli
Cited by: 40
Author(s): Matías Gutiérrez-González, Camila Farías, Samantha Tello, Diana Pérez-Etcheverry, A David Romero, Roberto Ariel Abeldaño Zúñiga, Carolina Ribeiro, Lorenzo-Ferreiro Carmen, Marı́a Molina
Software Mentions: 3
Published: about 5 years ago

10.1093/aobpla/plw070

Why is population information crucial for taxonomy? A case study involving a hybrid swarm and related varieties
Cited by: 8
Author(s): Tobias Marczewski, Yongpeng Ma, Xuemei Zhang, Weibang Sun, A. Jane Marczewski
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-48013-7

Characterization of cellular transcriptomic signatures induced by different respiratory viruses in human reconstituted airway epithelia
Cited by: 29
Author(s): Claire Nicolas de Lamballerie, Andrés Pizzorno, Julia Dubois, Thomas Julien, Blandine Padey, Mendy Bouveret, Aurélien Traversier, Catherine Legras-Lachuer, Bruno Lina, Guy Boivin, Benjamin Terrier, Manuel Rosa‐Calatrava
Software Mentions: 3
Published: over 5 years ago

10.1016/j.ebiom.2021.103332

Metabolomic profiling of pancreatic adenocarcinoma reveals key features driving clinical outcome and drug resistance
Cited by: 16
Author(s): Abdessamad El Kaoutari, Nicolás A. Fraunhoffer, Owen Hoare, Carlos Teyssedou, Philippe Soubeyran, Odile Gayet, Julie Roques, Gwen Lomberk, Raúl Urrutia, Nelson Dusetti, Juan Iovanna
Software Mentions: 3
Published: over 3 years ago

10.14814/phy2.12225

Pattern recognition receptors in the gut: analysis of their expression along the intestinal tract and the crypt/villus axis
Cited by: 44
Author(s): Pascal Gourbeyre, Mustapha Berri, Yannick Lippi, François Meurens, Silvia Vincent‐Naulleau, Joëlle Laffitte, Claire Rogel‐Gaillard, Philippe Pinton, Isabelle P. Oswald
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-019-44994-7

Effects of Different Diets on Microbiota in The Small Intestine Mucus and Weight Regulation in Rats
Cited by: 17
Author(s): Yu Meng, Xiaojun Li, Jie Zhang, Chunlian Wang, Fanggen Lu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-45290-0

Tomato plants rather than fertilizers drive microbial community structure in horticultural growing media
Cited by: 28
Author(s): Oliver Grunert, Ana A. Robles-Aguilar, Emma Hernandez-Sanabria, Silvia D. Schrey, Dirk Reheul, Marie-Christine Van Labeke, Siegfried E. Vlaeminck, Tom Vandekerckhove, Mohamed Mysara, Pieter Monsieurs, Vicky M. Temperton, Nico Boon, Nicolai David Jablonowski
Software Mentions: 3
Published: over 5 years ago

10.3390/ph14040351

Absence of Association between Methylene Blue Reduced Susceptibility and Polymorphisms in 12 Genes Involved in Antimalarial Drug Resistance in African Plasmodium falciparum
Cited by: 2
Author(s): Mathieu Gendrot, Océane Delandre, M Robert, Francis Tsombeng Foguim, B. Nicolas, Rémy Amalvict, Isabelle Fonta, Joël Mosnier, Marylin Madamet, Bruno Pradines
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2164-14-894

The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers
Cited by: 36
Author(s): Núria Mach, Yu Tang Gao, Gaëtan Lemonnier, Jérôme Lecardonnel, Isabelle P. Oswald, Jordi Estellé, Claire Rogel‐Gaillard
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-019-46878-2

Leaf economics and slow-fast adaptation across the geographic range of Arabidopsis thaliana
Cited by: 31
Author(s): Kevin Sartori, François Vasseur, Cyrille Violle, Étienne Baron, Marianne Gérard, Nick Rowe, Óscar Javier Ayala-Garay, Ananda Christophe, Laura García de Jalón, Diane Masclef, Erwan Harscouet, Maria del Rey Granado, Agathe Chassagneux, Elena Kazakou, Denis Vile
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.667832

Nasal and Fecal Microbiota and Immunoprofiling of Infants With and Without RSV Bronchiolitis
Cited by: 8
Author(s): Claudio Alba, Marina Aparicio, Felipe González‐Martínez, María-Isabel González-Sánchez, Jimena Pérez-Moreno, Blanca Toledo del Castillo, Juan Miguel Díaz Rodríguez, Rosa Rodríguez‐Fernández, Leónides Fernández
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.9517

Genetic variation of the Chilean endemic long-haired mouseAbrothrix longipilis(Rodentia, Supramyomorpha, Cricetidae) in a geographical and environmental context
Cited by: 11
Author(s): Lourdes Valdez, Marcial Quiroga‐Carmona, Guillermo D’Elı́a
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-019-42941-0

Effects of dietary arginine supplementation in pregnant mares on maternal metabolism, placental structure and function and foal growth
Cited by: 8
Author(s): Morgane Robles, Anne Couturier-Tarrade, Emilie Derisoud, Audrey Geeverding, Cédric Dubois, Michèle Dahirel, Josiane Aı̈oun, Audrey Prézelin, Juliane Calvez, Christophe Richard, Laurence Wimel, Pascale Chavatte‐Palmer
Software Mentions: 3
Published: over 5 years ago

10.3390/biology7010016

Integrated Systems Approach Reveals Sphingolipid Metabolism Pathway Dysregulation in Association with Late-Onset Alzheimer’s Disease
Cited by: 2
Author(s): John Malamon, Andres Kriete
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.6775

Distribution of crabs along a habitat gradient on the Yellow Sea coast after Spartina alterniflora invasion
Cited by: 3
Author(s): Pan Chen, Yan Zhang, Xingyu Zhu, Changhu Lu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-43110-z

High-throughput sequencing reveals the diversity and community structure of rhizosphere fungi of Ferula Sinkiangensis at different soil depths
Cited by: 25
Author(s): Tao Zhang, Zhongke Wang, Xinhua Lv, Yang Li, Zhuang Li
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-3816-1

Integrating transcriptomics and metabolomics for the analysis of the aroma profiles of Saccharomyces cerevisiae strains from diverse origins
Cited by: 30
Author(s): Inês Mendes, Isabelle Sanchez, Ricardo Franco-Duarte, Carole Camarasa, Dorit Elisabeth Schuller, Sylvie Dequin, Maria João Sousa
Software Mentions: 3
Published: over 7 years ago

10.1186/s40673-016-0042-6

Patterns of motor signs in spinocerebellar ataxia type 3 at the start of follow-up in a reference unit
Cited by: 6
Author(s): Irene Pulido-Valdeolivas, David Gómez‐Andrés, Irene Sanz-Gallego, Estrella Rausell, Javier Arpa
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.11928

Validation and analysis of the geographical origin of Angelica sinensis (Oliv.) Diels using multi-element and stable isotopes
Cited by: 2
Author(s): Shanjia Li, Hui Wang, Ling Jin, James F. White, Kathryn L. Kingsley, Wei Gou, Lijuan Cui, Fuxiang Wang, Zihao Wang, Guoqiang Wu
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.2676

Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)
Cited by: 10
Author(s): Matthew Z. DeMaere, Aaron E. Darling
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.11912

Evidence from the resurrected family Polyrhabdinidae Kamm, 1922 (Apicomplexa: Gregarinomorpha) supports the epimerite, an attachment organelle, as a major eugregarine innovation
Cited by: 5
Author(s): Gita G. Paskerova, Tatiana S. Miroliubova, Andrea Bardůnek Valigurová, Jan Janouškovec, Magdaléna Kováčiková, Andrei Diakin, Yuliya Y. Sokolova, Kirill V. Mikhailov, Vladimir V. Aleoshin, Timur G. Simdyanov
Software Mentions: 3
Published: about 3 years ago

10.3897/BDJ.9.e66649

Species diversity and distribution of freshwater molluscs of Javakheti Highlands (Republic of Georgia)
Cited by: 1
Author(s): Ani Bikashvili, Nino Kachlishvili, Levan Mumladze
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-40927-6

Comparison of Machine Learning Algorithms for Predictive Modeling of Beef Attributes Using Rapid Evaporative Ionization Mass Spectrometry (REIMS) Data
Cited by: 56
Author(s): Devin A. Gredell, Amelia Schroeder, K. E. Belk, Corey D. Broeckling, Adam L. Heuberger, Soo Young Kim, D. A. King, S. D. Shackelford, Julia L. Sharp, T. L. Wheeler, D. R. Woerner, Jessica E. Prenni
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-32792-6

Specificity of the osmotic stress response in Candida albicans highlighted by quantitative proteomics
Cited by: 16
Author(s): Martin Jacobsen, Robert J. Beynon, Lee A. Gethings, Amy J. Claydon, James Langridge, Johannes P.C. Vissers, Alistair J. P. Brown, Dean E. Hammond
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-017-3571-3

Understanding the response to endurance exercise using a systems biology approach: combining blood metabolomics, transcriptomics and miRNomics in horses
Cited by: 32
Author(s): Núria Mach, Yuliaxis Ramayo-Caldas, Allison Clark, Marco Moroldo, Céline Robert, Éric Barrey, Jesús Maria López, Laurence Le Moyec
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.celrep.2017.08.003

Alloimmune Responses of Humanized Mice to Human Pluripotent Stem Cell Therapeutics
Cited by: 29
Author(s): Nigel G. Kooreman, Patrícia E. de Almeida, J. Stack, Raman Nelakanti, Sebastian Diecke, Ning‐Yi Shao, Rutger-Jan Swijnenburg, Verónica Sánchez-Freire, Elena Matsa, Chun Li, Andrew J. Connolly, Jaap F. Hamming, Paul H.A. Quax, Michael A. Brehm, Dale L. Greiner, Leonard D. Shultz, Joseph C. Wu
Software Mentions: 3
Published: over 7 years ago

10.1186/s11658-021-00258-9

Association of cyclin-dependent kinase inhibitor 2B antisense RNA 1 gene expression and rs2383207 variant with breast cancer risk and survival
Cited by: 11
Author(s): Shahad W. Kattan, Yahya Hasan Hobani, Sameerah Shaheen, Sara H. Mokhtar, Mohammad Hussein, Eman A. Toraih, Manal S. Fawzy, Hussein Abdelaziz Abdalla
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.586476

Akkermansia muciniphila Improves Host Defense Against Influenza Virus Infection
Cited by: 24
Author(s): Xiaoru Hu, Ya Zhao, Yong Yang, Wenxiao Gong, Xiaomei Sun, Li Yang, Qiang Zhang, Meilin Jin
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-23962-7

Poultry hatcheries as potential reservoirs for antimicrobial-resistant Escherichia coli: A risk to public health and food safety
Cited by: 71
Author(s): Kamelia M. Osman, Anthony D. Kappell, Mohamed Elhadidy, Fatma El‐Mougy, Wafaa A. Abd El-Ghany, Ahmed Orabi, Ayman Mubarak, Turki M. Dawoud, Hassan A. Hemeg, Ihab M. Moussa, Ashgan M. Hessain, Hend M. Y. Yousef
Software Mentions: 3
Published: over 6 years ago

10.1186/s13148-017-0344-4

Genome-wide DNA methylation analysis reveals loci that distinguish different types of adipose tissue in obese individuals
Cited by: 27
Author(s): Donia Macartney-Coxson, Miles C. Benton, R. A. J. Blick, Richard S. Stubbs, R. D. Hagan, Michael A. Langston
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.9024

Long-term continuously monocropped peanut significantly changed the abundance and composition of soil bacterial communities
Cited by: 8
Author(s): Mingna Chen, Hu Liu, Shanlin Yu, Mian Wang, Lijuan Pan, Na Chen, Tong Wang, Xiaoyuan Chi, Binghai Du
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-07639-1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence
Cited by: 47
Author(s): Yannick Colin, Océane Nicolitch, Joy D. Van Nostrand, Jizhong Zhou, M.-P. Turpault, Stéphane Uroz
Software Mentions: 3
Published: about 7 years ago

10.3390/cancers11020155

An Integrative Data Mining and Omics-Based Translational Model for the Identification and Validation of Oncogenic Biomarkers of Pancreatic Cancer
Cited by: 32
Author(s): Nguyen Phuoc Long, Kyung Hee Jung, Nguyễn Hoàng Anh, Pengcheng Zhang, Tran Diem Nghi, Seongoh Park, Sang Jun Yoon, Jung Eun Min, Hyung Min Kim, Joo Han Lim, Joon Mee Kim, Jong-Tae Lim, Sanghyuk Lee, Soon‐Sun Hong, Sung Won Kwon
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2018.00276

Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors
Cited by: 52
Author(s): David Lopez, Sébastien Ribeiro, Philippe Label, Boris Fumanal, Jean-Stéphane Venisse, Annegret Kohler, Ricardo Ribeiro de Oliveira, Kurt LaButti, Anna Lipzen, Kathleen Lail, Diane Bauer, Robin A. Ohm, Kerrie Barry, Joseph W. Spatafora, Igor V. Grigoriev, Francis Martin, Valérie Pujade-Renaud
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.565367

Effects of Rearing Conditions and Sex on Cecal Microbiota in Ducks
Cited by: 13
Author(s): Chunhong Zhu, Wenjuan Xu, Tao Zhang, Wenming Song, Hongxiang Liu, Shuangjie Zhang, Huifang Li
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2018.00176

Occurrence of Harmful Cyanobacteria in Drinking Water from a Severely Drought-Impacted Semi-arid Region
Cited by: 38
Author(s): Juline M. Walter, Fabyano Álvares Cardoso Lopes, Mônica Lopes-Ferreira, Leonardo Vidal, Luciana Leomil, Fabiana Cristina Silveira Alves de Melo, Girlene S. de Azevedo, Rossandra M. S. Oliveira, Alba J. Medeiros, Adriana Melo, Carlos Eduardo de Rezende, Amílcar Tanuri, Fabiano L. Thompson
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-27325-0

Investigating Holocene human population history in North Asia using ancient mitogenomes
Cited by: 13
Author(s): Gülşah Merve Kılınç, Natalija Kashuba, Reyhan Yaka, Arev Pelin Sümer, Eren Yüncü, Dmitrij Shergin, Grigorij Leonidovich Ivanov, Dmitrii Kichigin, Kiunnei A. Pestereva, D.P. Volkov, Pavel V. Mandryka, Artur Kharinskii, А. Тишкин, Evgenij Ineshin, Evgeniy Kovychev, А. Д. Степанов, Aanatolij Alekseev, Svetlana Aleksandrovna Fedoseeva, Mehmet Somel, Mattias Jakobsson, Maja Krzewińska, Jan Storå, Anders Götherström
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-56931-9

Farmer typology to understand differentiated climate change adaptation in Himalaya
Cited by: 30
Author(s): Roopam Shukla, Ankit Agarwal, Christoph Gornott, Kamna Sachdeva, P. K. Joshi
Software Mentions: 3
Published: almost 5 years ago

10.1038/srep28984

An emerging zoonotic clone in the Netherlands provides clues to virulence and zoonotic potential of Streptococcus suis
Cited by: 37
Author(s): Niels Willemse, Kate J. Howell, Lucy A. Weinert, Annet Heuvelink, Yvonne Pannekoek, Jaap A. Wagenaar, Hilde E. Smith, Arie van der Ende, Constance Schultsz
Software Mentions: 3
Published: over 8 years ago

10.1038/srep23092

Unlocking the genetic diversity of Creole wheats
Cited by: 63
Author(s): Prashant Vikram, Jorge Franco, Juan Burgueño, Huihui Li, Deepmala Sehgal, Carolina Saint Pierre, Claudia Vásquez, Clay Sneller, Maria Tattaris, Carlos Guzmán, Carolina Sansaloni, Guillermo Fuentes-Dávila, M.P. Reynolds, Kai Sonder, Pawan Kumar Singh, Thomas Payne, Peter Wenzl, Achla Sharma, N. S. Bains, Gyanendra Pratap Singh, José Crossa, Sukhwinder Singh
Software Mentions: 3
Published: over 8 years ago

10.3390/pathogens9010005

Prevalence, Pathogenicity, Virulence, Antibiotic Resistance, and Phylogenetic Analysis of Biofilm-Producing Listeria monocytogenes Isolated from Different Ecological Niches in Egypt: Food, Humans, Animals, and Environment
Cited by: 18
Author(s): Kamelia M. Osman, Anthony D. Kappell, Edward M. Fox, Ahmed Orabi, Ahmed Samir
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12863-016-0432-z

Genetic basis of nitrogen use efficiency and yield stability across environments in winter rapeseed
Cited by: 29
Author(s): Anne-Sophie Bouchet, Anne Laperche, Christine Bissuel-Bélaygue, Cécile Baron, Jérôme Morice, Mathieu Rousseau‐Gueutin, Jean-Éric Dheu, Pierre George, Xavier Pinochet, Thomas Foubert, Olivier Maës, Damien Dugué, Florent Guinot, Nathalie Nési
Software Mentions: 3
Published: about 8 years ago

10.3390/pathogens9090679

Antibiotic Treatment in Anopheles coluzzii Affects Carbon and Nitrogen Metabolism
Cited by: 15
Author(s): Estelle Chabanol, Volker Behrends, Ghislaine Prévôt, George K. Christophides, Mathilde Gendrin
Software Mentions: 3
Published: over 4 years ago

10.1186/1756-3305-7-370

Shaping zoonosis risk: landscape ecology vs. landscape attractiveness for people, the case of tick-borne encephalitis in Sweden
Cited by: 36
Author(s): Caroline Zeimes, Gert E. Olsson, Marika Hjertqvist, Sophie Vanwambeke
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep19706

Distribution of vascular epiphytes along a tropical elevational gradient: disentangling abiotic and biotic determinants
Cited by: 48
Author(s): Yi Ding, Guangfu Liu, Jian Zhang, Xinghui Lu, Jihong Huang
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0228521

Lipidomics of human adipose tissue reveals diversity between body areas
Cited by: 10
Author(s): Naba Al-Sari, Tommi Suvitaival, Ismo Mattila, Ashfaq Ali, Linda Ahonen, Kajetan Trošt, Trine Henriksen, Flemming Pociot, Lars Ove Dragsted, Cristina Legido‐Quigley
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2020.00395

Different Genetic Sources Contribute to the Small RNA Population in the Arbuscular Mycorrhizal Fungus Gigaspora margarita
Cited by: 17
Author(s): Alessandro Silvestri, Massimo Turina, Valentina Fiorilli, Laura Miozzi, Francesco Venice, Paola Bonfante, Luisa Lanfranco
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-019-44064-y

GC-Recomposition-Olfactometry (GC-R) and multivariate study of three terpenoid compounds in the aroma profile of Angostura bitters
Cited by: 12
Author(s): Arielle J. Johnson, Anna K. Hjelmeland, Hildegarde Heymann, Susan E. Ebeler
Software Mentions: 3
Published: over 5 years ago

10.1186/s12863-020-00846-2

A method for obtaining flexible broccoli varieties for sustainable agriculture
Cited by: 3
Author(s): Simona Ciancaleoni, Valeria Negri
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2020.01700

Administration of Extensive Hydrolysates From Caseins and Lactobacillus rhamnosus GG Probiotic Does Not Prevent Cow’s Milk Proteins Allergy in a Mouse Model
Cited by: 4
Author(s): Karine Adel‐Patient, Marine Guinot, Blanche Guillon, Hervé Bernard, Amina Chikhi, Stéphane Hazebrouck, Christophe Junot
Software Mentions: 3
Published: about 4 years ago

10.1038/srep21507

Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers
Cited by: 98
Author(s): Anja M. Billing, Hisham Ben Hamidane, Shaima S. Dib, Richard Cotton, Aditya Bhagwat, Pankaj Kumar, Shahina Hayat, Noha A. Yousri, Neha Goswami, Karsten Suhre, Arash Rafii, Johannes Graumann
Software Mentions: 3
Published: almost 9 years ago

10.1530/REP-15-0253

Mating induces the expression of immune- and pH-regulatory genes in the utero-vaginal junction containing mucosal sperm-storage tubuli of hens
Cited by: 25
Author(s): Mohammad Atikuzzaman, Ratnesh Mehta Bhai, Jesper Fogelholm, Dominic Wright, Heriberto Rodríguez-Martinez
Software Mentions: 3
Published: almost 9 years ago

10.3389/fimmu.2021.700521

A Comprehensive Analysis of Immune Constituents in Blood and Bronchoalveolar Lavage Allows Identification of an Immune Signature of Severe Asthma in Children
Cited by: 8
Author(s): Karine Adel‐Patient, Marta Grauso, Rola Abou‐Taam, Blanche Guillon, Céline Dietrich, François Machavoine, Mélanie Briard, Nicolas Garcelon, Hassan Faour, Antoine Neuraz, Christophe Delacourt, Thierry Jo Molina, Maria Leite‐de‐Moraes, Guillaume Lezmi
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2020.00305

Impact of Nutrient Availability on the Fermentation and Production of Aroma Compounds Under Sequential Inoculation With M. pulcherrima and S. cerevisiae
Cited by: 23
Author(s): Pauline Seguinot, Anne Ortiz‐Julien, Carole Camarasa
Software Mentions: 3
Published: over 4 years ago

Projects: cran: FactoMineR

Papers Mentioning FactoMineR 1,101