cran: FactoMineR | Projects | Ecosyste.ms: Papers

10.3389/fcvm.2020.575275

Reactivation of Atrium Genes Is a Primer for Heart Infarction or Regeneration
Cited by: 1
Author(s): Yang Zhen
Software Mentions: 8
Published: about 4 years ago

Phenomapping of Patients with Primary Breast Cancer Using Machine Learning-Based Unsupervised Cluster Analysis
Cited by: 9
Author(s): Sara Ferro, Daniele Bottigliengo, Darío Gregori, Aline S C Fabrício, Massimo Gion, Ileana Baldi
Software Mentions: 8
Published: over 3 years ago

10.3390/jcm9113569

Seroprevalence of SARS-CoV-2 IgG Antibodies in Corsica (France), April and June 2020
Cited by: 11
Author(s): Lisandru Capai, Nazlı Ayhan, Shirley Masse, Jean Canarelli, Stéphane Priet, Marie-Hélène Simeoni, Rémi N. Charrel, Xavier de Lamballerie, Alessandra Falchi
Software Mentions: 8
Published: about 4 years ago

10.18632/oncotarget.9346

<i>De novo</i> HAPLN1 expression hallmarks Wnt-induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas
Cited by: 30
Author(s): Sihem Mebarki, Romain Désert, Laurent Sulpice, Marie Sicard, Mireille Desille, Frédéric Canal, Hélène Dubois-Pot Schneider, Damien Bergeat, Bruno Turlin, Pascale Bellaud, Elise Lavergne, Rémy Le Guével, Anne Corlu, Christine Perret, Cédric Coulouarn, Bruno Clément, Orlando Musso
Software Mentions: 8
Published: over 8 years ago

10.3390/genes10110875

The Role of Plasticity and Adaptation in the Incipient Speciation of a Fire Salamander Population
Cited by: 6
Author(s): Joana Sabino‐Pinto, Daniel J. Goedbloed, Eugenia Sanchez, Thomas Czypionka, Arne W. Nolte, Sebastian Steinfartz
Software Mentions: 8
Published: about 5 years ago

10.3390/biom10081179

Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs
Cited by: 2
Author(s): Narciso M. Quijada, Raúl Bodas, José M. Lorenzo, Stephan Schmitz‐Esser, David Rodrı́guez-Làzaro, Marta Hernández
Software Mentions: 8
Published: over 4 years ago

10.3389/fnhum.2019.00181

Ability-Based Emotional Intelligence Is Associated With Greater Cardiac Vagal Control and Reactivity
Cited by: 3
Author(s): John R. Vanuk, Anna Alkozei, Adam C. Raikes, John J. B. Allen, William D.S. Killgore
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-38483-0

Metabotyping as a Stopover in Genome-to-Phenome Mapping
Cited by: 31
Author(s): Pubudu Handakumbura, Bryan Stanfill, Albert Rivas‐Ubach, Dan Fortin, John P. Vogel, Christer Jansson
Software Mentions: 8
Published: almost 6 years ago

10.1155/2014/213656

A Review of Feature Extraction Software for Microarray Gene Expression Data
Cited by: 10
Author(s): Ching Siang Tan, Wai S oon Ting, Mohd Saberi Mohamad, Weng Howe Chan, Safaai Deris, Zuraini Ali Shah
Software Mentions: 8
Published: almost 11 years ago

10.3390/biology8040088

Reproductive Biology and Ecology of the Green Mussel Perna viridis: A Multidisciplinary Approach
Cited by: 8
Author(s): Md. Asaduzzaman, Aysha Rahi Noor, Md. Moshiur Rahman, Shirin Akter, Nayeema Ferdausy Hoque, Abrar Shakil, Abdul Wahab
Software Mentions: 8
Published: about 5 years ago

10.3389/fpls.2020.542153

Heritable Variation in Pea for Resistance Against a Root Rot Complex and Its Characterization by Amplicon Sequencing
Cited by: 9
Author(s): Lukas Wille, Monika Messmer, Natacha Bodenhausen, Bruno Studer, Pierre Hohmann
Software Mentions: 7
Published: about 4 years ago

10.1242/dev.199561

Global proteomic analyses of human cytotrophoblast differentiation/invasion
Cited by: 4
Author(s): Hao Chen, Katherine E. Williams, Elaine Kwan, Mirhan Kapidzic, Kenisha A. Puckett, Rayyan Aburajab, Joshua F. Robinson, Susan J. Fisher
Software Mentions: 7
Published: over 3 years ago

10.3389/fpls.2019.01645

Early Responses of Brassica oleracea Roots to Zinc Supply Under Sufficient and Sub-Optimal Phosphorus Supply
Cited by: 15
Author(s): Paula Pongrac, Sina Fischer, Jacqueline Thompson, G. M. Wright, Philip J. White
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0224079

Typological analysis of public-private partnerships in the veterinary domain
Cited by: 11
Author(s): Margot Galiere, Marisa Peyre, Facundo Muñoz, Mariline Poupaud, A. Dehove, François Roger, Isabelle Dieuzy-Labaye
Software Mentions: 7
Published: about 5 years ago

10.3390/ijms21176028

Developmental Methylome of the Medicinal Plant Catharanthus roseus Unravels the Tissue-Specific Control of the Monoterpene Indole Alkaloid Pathway by DNA Methylation
Cited by: 12
Author(s): Thomas Dugé de Bernonville, Stéphane Maury, Alain Delaunay, Christian Daviaud, Cristian Chaparro, Jörg Tost, Sarah E. O’Connor, Vincent Courdavault
Software Mentions: 7
Published: over 4 years ago

10.1128/mSystems.00632-19

Early-Stage <i>Staphylococcus aureus</i> Bloodstream Infection Causes Changes in the Concentrations of Lipoproteins and Acute-Phase Proteins and Is Associated with Low Antibody Titers against Bacterial Virulence Factors
Cited by: 7
Author(s): Stephan Michalik, Nandakumar Sundaramoorthy, Annette Murr, Maren Depke, Uwe Völker, Barbara M. Bröker, Hege Vangstein Aamot, Frank Schmidt
Software Mentions: 7
Published: almost 5 years ago

10.1186/s40851-019-0136-0

A new calmanostracan crustacean species from the Cretaceous Yixian Formation and a simple approach for differentiating fossil tadpole shrimps and their relatives
Cited by: 3
Author(s): Philipp Wagner, Joachim T. Haug, Carolin Haug
Software Mentions: 7
Published: over 5 years ago

10.3390/jof7040253

Molecular and Environmental Triggering Factors of Pathogenicity of Fusarium oxysporum and F. solani Isolates Involved in the Coffee Corky-Root Disease
Cited by: 3
Author(s): Roberto Gamboa-Becerra, Daniel López-Lima, Luc Villain, Jean‐Christophe Breitler, Gloria Carrión, Damaris Desgarennes
Software Mentions: 7
Published: over 3 years ago

10.1186/s12862-019-1510-4

Geographic isolation and climatic variability contribute to genetic differentiation in fragmented populations of the long-lived subalpine conifer Pinus cembra L. in the western Alps
Cited by: 26
Author(s): Endre György Tóth, Francine Tremblay, Johann M. Housset, Yves Bergeron, Christopher Carcaillet
Software Mentions: 7
Published: about 5 years ago

10.1038/s41419-021-03540-y

Metabolomic analyses of COVID-19 patients unravel stage-dependent and prognostic biomarkers
Cited by: 99
Author(s): François‐Xavier Danlos, Claudia Grajeda‐Iglesias, Sylvère Durand, Allan Sauvat, Mathilde Roumier, D. Cantin, Emeline Colomba, Julien Rohmer, Fanny Pommeret, Giulia Baciarello, Christophe Willekens, Marc Vasse, Franck Griscelli, Jean-Eudes Fahrner, Anne-Gaëlle Goubet, Agathe Dubuisson, Lisa Derosa, Nitharsshini Nirmalathasan, Delphine Bredel, Séverine Mouraud, Caroline Pradon, Annabelle Stoclin, Flore Rozenberg, Jérôme Duchemin, Georges Jourdi, Syrine Ellouze, Françoise Levavasseur, Laurence Albigès, Jean‐Charles Soria, Fabrice Barlési, Éric Solary, Fabrice André, Frédéric Pène, Félix Ackerman, Luc Mouthon, Laurence Zitvogel, Aurélien Marabelle, Jean‐Marie Michot, Michaëla Fontenay, Guido Kroemer
Software Mentions: 7
Published: over 3 years ago

10.3390/molecules26113475

Unveiling Putative Functions of Mucus Proteins and Their Tryptic Peptides in Seven Gastropod Species Using Comparative Proteomics and Machine Learning-Based Bioinformatics Predictions
Cited by: 13
Author(s): Viroj Tachapuripunya, Sittiruk Roytrakul, Pramote Chumnanpuen, Teerasak E-kobon
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-94961-4

Delineating virulence of Vibrio campbellii: a predominant luminescent bacterial pathogen in Indian shrimp hatcheries
Cited by: 14
Author(s): Sujeet Kumar, Chandra Bhushan Kumar, Vidya Rajendran, Nishawlini Abishaw, P.S. Shyne Anand, S. Kannapan, Viswas Konasagara Nagaleekar, Koyadan Kizhakedath Vijayan, S.V. Alavandi
Software Mentions: 7
Published: over 3 years ago

10.3390/microorganisms9030609

Microbial Succession under Freeze–Thaw Events and Its Potential for Hydrocarbon Degradation in Nutrient-Amended Antarctic Soil
Cited by: 3
Author(s): Hugo Emiliano de Jesus, Renato S. Carreira, Simone S.M. Paiva, Carlos German Massone, Alex Enrich‐Prast, Raquel S. Peixoto, Jorge L. M. Rodrigues, Charles K. Lee, S. Craig Cary, Alexandre Soares Rosado
Software Mentions: 7
Published: over 3 years ago

10.1186/s40168-016-0222-x

Gut microbiota dysbiosis contributes to the development of hypertension
Cited by: 972
Author(s): Jingjing Li, Fangqing Zhao, Yidan Wang, Junru Chen, Jie Tao, Gang Tian, Shouling Wu, Wenbin Liu, Qinghua Cui, Bin Geng, Weili Zhang, Ryan Weldon, Kelda Auguste, Lei Yang, Xiaoyan Liu, Li Chen, Xinchun Yang, Baoli Zhu, Jun Cai
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-020-70318-1

The role of seagrass vegetation and local environmental conditions in shaping benthic bacterial and macroinvertebrate communities in a tropical coastal lagoon
Cited by: 25
Author(s): Zahra Hassan Ali Alsaffar, John K. Pearman, J. Cúrdia, Joanne I. Ellis, María Ll. Calleja, Pedro Ruiz-Compean, Florian Roth, Rodrigo Villalobos, Burton H. Jones, Xosé Anxelu G. Morán, Susana Carvalho
Software Mentions: 7
Published: over 4 years ago

10.3389/fmicb.2018.02528

Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of Mexico
Cited by: 32
Author(s): Elizabeth Ernestina Godoy-Lozano, Alejandra Escobar‐Zepeda, Luciana Raggi, Enrique Merino, Rosa Marı́a Gutiérrez-Rı́os, Katy Juarez, Lorenzo Segovia, Alexei F. Licea-Navarro, Adolfo Gracía, Alejandro Sánchez-Flores, Liliana Pardo-López
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0102457

The “Bear” Essentials: Actualistic Research on Ursus arctos arctos in the Spanish Pyrenees and Its Implications for Paleontology and Archaeology
Cited by: 62
Author(s): Maite Arilla, Jordi Rosell, Ruth Blasco, Manuel Domínguez‐Rodrigo, Travis Rayne Pickering
Software Mentions: 7
Published: over 10 years ago

10.3389/fimmu.2020.588411

Distinctive Cellular and Metabolic Reprogramming in Porcine Lung Mononuclear Phagocytes Infected With Type 1 PRRSV Strains
Cited by: 6
Author(s): Elisa Crisci, Marco Moroldo, Thien‐Phong Vu Manh, Ammara Mohammad, Laurent Jourdren, Céline Urien, Edwige Bouguyon, Elise Bordet, Claudia Bevilacqua, Mickaël Bourge, Jérémy Pezant, Alexis Pléau, Olivier Boulesteix, Isabelle Schwartz, Nicolas Bertho, Elisabetta Giuffra
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-019-47307-0

Three decades of heat stress exposure in Caribbean coral reefs: a new regional delineation to enhance conservation
Cited by: 52
Author(s): Aarón Israel Muñiz-Castillo, Andrea Rivera-Sosa, Iliana Chollett, C. Mark Eakin, Luisa Andrade-Gómez, Melanie McField, Jesús Ernesto Arias‐González
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2014.00601

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data
Cited by: 8
Author(s): Alban Ramette, Pier Luigi Buttigieg
Software Mentions: 7
Published: about 10 years ago

10.1038/srep28657

Pubertal development in healthy children is mirrored by DNA methylation patterns in peripheral blood
Cited by: 57
Author(s): Kristian Almstrup, Marie Johansen, Alexander Busch, Casper P Hagen, John Nielsen, Jørgen Holm Petersen, Anders Juul
Software Mentions: 7
Published: over 8 years ago

10.3390/metabo11030186

Elemental and Isotopic Characterization of Tobacco from Umbria
Cited by: 3
Author(s): Luana Bontempo, D. Bertoldi, Pietro Franceschi, Fabio Rossi, R. Larcher
Software Mentions: 7
Published: over 3 years ago

10.1038/srep29532

Delineation of autoantibody repertoire through differential proteogenomics in hepatitis C virus-induced cryoglobulinemia
Cited by: 12
Author(s): Masato Ogishi, Hiroshi Yotsuyanagi, Kyoji Moriya, Kazuhiko Koike
Software Mentions: 7
Published: over 8 years ago

10.3389/fgene.2021.710485

Evaluations of Genomic Prediction and Identification of New Loci for Resistance to Stripe Rust Disease in Wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Vipin Tomar, G. S. Dhillon, Daljit Singh, Ravi P. Singh, Jesse Poland, Anis Ahmad Chaudhary, Pradeep Kumar Bhati, Arun Kumar Joshi, Uttam Kumar
Software Mentions: 7
Published: about 3 years ago

10.3390/molecules25153402

The Mineral Profile of Polish Beers by Fast Sequential Multielement HR CS FAAS Analysis and Its Correlation with Total Phenolic Content and Antioxidant Activity by Chemometric Methods
Cited by: 8
Author(s): Elżbieta Zambrzycka-Szelewa, Edyta Nalewajko-Sieliwoniuk, Mariusz Zaremba, Andrzej Bajguz, Beata Godlewska‐Żyłkiewicz
Software Mentions: 7
Published: over 4 years ago

10.1017/S0950268818002996

Parasitic infections in relation to practices and knowledge in a rural village in Northern Thailand with emphasis on fish-borne trematode infection
Cited by: 8
Author(s): Kittipong Chaisiri, Chloé Jollivet, Pauline Della Rossa, Surapol Sanguankiat, Dorn Wattanakulpanich, Claire Lajaunie, Aurélie Binot, Malee Tanita, Sungkhom Rattanapikul, D. Sutdan, Serge Morand, Alexis Ribas
Software Mentions: 7
Published: about 6 years ago

10.1186/s40851-021-00176-w

Integrative taxonomy resolves species identities within the Macrobiotus pallarii complex (Eutardigrada: Macrobiotidae)
Cited by: 18
Author(s): Daniel Stec, Matteo Vecchi, Magdalena Dudziak, Paul Bartels, Sara Calhim, Łukasz Michalczyk
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0241691

Succinivibrionaceae is dominant family in fecal microbiota of Behçet’s Syndrome patients with uveitis
Cited by: 12
Author(s): Duygu Tecer, Feride Göğüş, Ayşe Kalkancı, Merve Erdoğan, Murat Hasanreisoğlu, Çağrı Ergin, Tarkan Karakan, Ramazan Kozan, Serhat Emre Coban, Kadir Serdar Diker
Software Mentions: 7
Published: about 4 years ago

10.3390/plants10051026

Foliar Endophytic Fungi from the Endangered Eastern Mountain Avens (Geum peckii, Rosaceae) in Canada
Cited by: 4
Author(s): Sarah J. Adams, Brent M. Robicheau, D.M. LaRue, Robin Browne, Allison K. Walker
Software Mentions: 7
Published: over 3 years ago

10.3390/insects11080460

Honeydew Deposition by the Giant Willow Aphid (Tuberolachnus salignus) Affects Soil Biota and Soil Biochemical Properties
Cited by: 7
Author(s): Kyaw Min Tun, Andrea Clavijo McCormick, Trevor Jones, Stanislav Garbuz, Maria A. Minor
Software Mentions: 7
Published: over 4 years ago

10.3390/nu13061905

Microbiota and Metabolite Modifications after Dietary Exclusion of Dairy Products and Reduced Consumption of Fermented Food in Young and Older Men
Cited by: 4
Author(s): Jinyoung Kim, Kathryn J. Burton-Pimentel, Charlotte Fleuti, Carola Blaser, Valentin Scherz, René Badertscher, Corinne Marmonier, Noëlle Lyon-Belgy, A. Caillé, Véronique Pidou, Adeline Blot, Claire Bertelli, Jérémie David, Ueli Bütikofer, Gilbert Greub, Dominique Dardevet, Sergio Polakof, Guy Vergères
Software Mentions: 7
Published: over 3 years ago

10.3390/molecules26154538

Interstrain Variability of Human Vaginal Lactobacillus crispatus for Metabolism of Biogenic Amines and Antimicrobial Activity against Urogenital Pathogens
Cited by: 8
Author(s): Scarlett Puebla-Barragan, Emiley Watson, Charlotte van der Veer, John A. Chmiel, Charles Carr, Jeremy P. Burton, Mark W. Sumarah, Remco Kort, Gregor Reid
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-019-1768-2

Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes
Cited by: 60
Author(s): Geoffrey M. Attardo, Adly M. M. Abd-Alla, Álvaro Acosta-Serrano, James Allen, Rosemary Bateta, Joshua B. Benoit, Kostas Bourtzis, Jo Caers, Guy Caljon, Mikkel Christensen, David W. Farrow, Markus Friedrich, Aurélie Hua-Van, Emily C. Jennings, Denis M. Larkin, Daniel Lawson, Michael J. Lehane, Vasileios Panagiotis Lenis, Ernesto Lowy-Gallego, Rosaline W. Macharia, Anna R. Malacrida, Heather G. Marco, Daniel Masiga, G. Maslen, Irina Matetovici, Richard P Meisel, Irene K. Meki, Veronika Michalková, Wolfgang J. Miller, Patrick Minx, Paul O. Mireji, Lino Ometto, Andrew G. Parker, Rita V. M. Rio, Clair Rose, Andrew J. Rosendale, Omar Rota‐Stabelli, Grazia Savini, Liliane Schoofs, Francesca Scolari, Martin Swain, Peter Takáč, Chad Tomlinson, George Tsiamis, Jan Van Den Abbeele, Aurélien Vigneron, Jingwen Wang, Wesley C. Warren, Robert M. Waterhouse, Matthew T. Weirauch, Brian L. Weiss, Richard K. Wilson, Xin Zhao, Serap Aksoy
Software Mentions: 7
Published: about 5 years ago

10.1186/s13059-019-1912-z

cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
Cited by: 14
Author(s): Michael Frochaux, Maroun Bou Sleiman, Vincent Gardeux, Riccardo Dainese, Brian Hollis, Maria Litovchenko, Virginie Braman, Tommaso Andreani, Dani Osman, Bart Deplancke
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pbio.3000792

Heritable gene expression variability and stochasticity govern clonal heterogeneity in circadian period
Cited by: 12
Author(s): K. L. Nikhil, Sandra Korge, Achim Kramer
Software Mentions: 7
Published: over 4 years ago

10.1038/s41392-021-00703-3

Differential immune responses in pregnant patients recovered from COVID-19
Cited by: 21
Author(s): Ge Chen, Yiming Zhang, Yaoyao Zhang, Jihui Ai, Bin Yang, Mengge Cui, Qiande Liao, Hanxiao Chen, Hualin Bai, Dashing Shang, Jing Chen, Chaoyang Sun, Haiyi Liu, Fengyuan Liu, Biming Mao, Guoqiang Sun, Lu Chen, Jing-wen Lin, Kezhen Li
Software Mentions: 7
Published: over 3 years ago

10.3389/fpls.2021.681113

Root Functional Trait and Soil Microbial Coordination: Implications for Soil Respiration in Riparian Agroecosystems
Cited by: 11
Author(s): Kira A. Borden, Tolulope Mafa-Attoye, Kari E. Dunfield, Naresh V. Thevathasan, Andrew Gordon, Marney E. Isaac
Software Mentions: 6
Published: over 3 years ago

10.3390/antiox10030351

Physiological and Biochemical Dissection Reveals a Trade-Off between Antioxidant Capacity and Heat Tolerance in Bread Wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Mohammed Mohi-Ud-Din, Md. Nurealam Siddiqui, Motiar Rohman, S. V. Krishna Jagadish, Jalal Uddin Ahmed, Mohamed M. Hassan, Akbar Hossain, Tofazzal Islam
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms21010079

Current Projection Methods-Induced Biases at Subgroup Detection for Machine-Learning Based Data-Analysis of Biomedical Data
Cited by: 10
Author(s): Jörn Lötsch, Alfred Ultsch
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.8048

Community species diversity mediates the trade‐off between aboveground and belowground biomass for grasses and forbs in degraded alpine meadow, Tibetan Plateau
Cited by: 2
Author(s): Tiancai Zhou, Jian Sun, Nan Zong, Guichen Hou, Peili Shi
Software Mentions: 6
Published: about 3 years ago

10.1242/dev.167833

Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development
Cited by: 145
Author(s): Thorsten Boroviak, Giuliano Giuseppe Stirparo, Sabine Dietmann, Irene Hernando-Herraez, Hisham Mohammed, Wolf Reik, Austin Smith, Erika Sasaki, Jennifer Nichols, Paul Bertone
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0024754

Down-Regulating γ-Gliadins in Bread Wheat Leads to Non-Specific Increases in Other Gluten Proteins and Has No Major Effect on Dough Gluten Strength
Cited by: 74
Author(s): Fernando Pistón, Javier Gil-Humanes, Marta Rodríguez-Quijano, Francisco Barro
Software Mentions: 6
Published: about 13 years ago

10.2196/18741

Assessing the Contribution of Self-Monitoring Through a Commercial Weight Loss App: Mediation and Predictive Modeling Study
Cited by: 4
Author(s): Gregory Farage, Courtney Simmons, Mehmet Kocak, Robert C. Klesges, G. Wayne Talcott, Phyllis A. Richey, Marion E. Hare, Karen C. Johnson, Śaunak Sen, Rebecca A. Krukowski
Software Mentions: 6
Published: over 3 years ago

10.1186/s12864-019-5927-3

Alternative polyadenylation produces multiple 3’ untranslated regions of odorant receptor mRNAs in mouse olfactory sensory neurons
Cited by: 5
Author(s): Mohamed Doulazmi, Cyril Cros, Isabelle Dusart, Alain Trembleau, Caroline Dubacq
Software Mentions: 6
Published: over 5 years ago

10.1186/s13007-020-00611-7

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
Cited by: 22
Author(s): Ilana Lambert, Christine Paysant‐Le Roux, Stefano Colella, Marie-Laure Martin
Software Mentions: 6
Published: over 4 years ago

10.1016/j.stem.2019.07.009

Distinct Molecular Trajectories Converge to Induce Naive Pluripotency
Cited by: 27
Author(s): Hannah Stuart, Giuliano Giuseppe Stirparo, Tim Lohoff, Lawrence E. Bates, Masaki Kinoshita, Chee Lim, Elsa Joana Sousa, Katsiaryna Maskalenka, Aliaksandra Radzisheuskaya, Andrew A. Malcolm, Mariana R. P. Alves, Rebecca L. Lloyd, Sonia Nestorowa, Peter Humphreys, William Mansfield, Wolf Reik, Paul Bertone, Jennifer Nichols, Berthold Göttgens, José C.R. Silva
Software Mentions: 6
Published: about 5 years ago

10.3389/fpls.2021.587482

Identification of Promising RILs for High Grain Zinc Through Genotype × Environment Analysis and Stable Grain Zinc QTL Using SSRs and SNPs in Rice (Oryza sativa L.)
Cited by: 19
Author(s): K. Suman, C. N. Neeraja, P. Madhubabu, Santosha Rathod, Sonali Bej, Kashmiri Jadhav, Jitendra Kumar, U. Chaitanya, Sunil Pawar, Surekha H. Rani, L. V. Subbarao, S. R. Voleti
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12888-017-1420-1

Validation and psychometric properties of the Somatic and Psychological HEalth REport (SPHERE) in a young Australian-based population sample using non-parametric item response theory
Cited by: 13
Author(s): Baptiste Couvy‐Duchesne, Tracey A Davenport, Nicholas G. Martin, Margaret J. Wright, Ian B. Hickie
Software Mentions: 6
Published: over 7 years ago

10.3389/fonc.2020.572708

Hematopoietic Gene Expression Regulation Through m6A Methylation Predicts Prognosis in Stage III Colorectal Cancer
Cited by: 1
Author(s): Zheng Zhou, Shaobo Mo, Ruiqi Gu, Weixing Dai, Xinhui Zou, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai
Software Mentions: 6
Published: about 4 years ago

10.1186/s42523-019-0019-x

Ecological and microbiological diversity of chigger mites, including vectors of scrub typhus, on small mammals across stratified habitats in Thailand
Cited by: 17
Author(s): Kittipong Chaisiri, A. Christina Gill, Alexandr A. Stekolnikov, Soawapak Hinjoy, John McGarry, Alistair C. Darby, Sergé Morand, Benjamin L. Makepeace
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12862-016-0766-1

Why do different oceanic archipelagos harbour contrasting levels of species diversity? The macaronesian endemic genus Pericallis (Asteraceae) provides insight into explaining the ‘Azores diversity Enigma’
Cited by: 4
Author(s): K. Jones, Sílvia Pérez‐Espona, J. Alfredo Reyes‐Betancort, David Pattinson, Juli Caujapé‐Castells, Simon J. Hiscock, Mark A. Carine
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0234390

Modeling the relationship between estimated fungicide use and disease-associated yield losses of soybean in the United States I: Foliar fungicides vs foliar diseases
Cited by: 15
Author(s): Ananda Y. Bandara, Dilooshi K. Weerasooriya, Shawn P. Conley, Carl A. Bradley, Tom Allen, Paul D. Esker
Software Mentions: 6
Published: over 4 years ago

10.1186/s12862-021-01877-8

How do lizard niches conserve, diverge or converge? Further exploration of saurian evolutionary ecology
Cited by: 5
Author(s): Nicolás Pelegrín, Kirk O. Winemiller, Laurie J. Vitt, Daniel B. Fitzgerald, Eric R. Pianka
Software Mentions: 6
Published: over 3 years ago

10.1186/s12866-020-02031-y

Identifying candidate Aspergillus pathogenicity factors by annotation frequency
Cited by: 4
Author(s): Kayla K. Pennerman, Guohua Yin, Anthony E. Glenn, Joan W. Bennett
Software Mentions: 6
Published: about 4 years ago

10.1186/s12874-021-01305-x

Discovering the underlying typology of emergency departments
Cited by: 0
Author(s): Marine Demarquet, Laurie Fraticelli, Julie Freyssenge, Clément Claustre, M. Martinez, J. Duchenne, Carlos El Khoury, Abdesslam Redjaline, Karim Tazarourte
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2017.01548

Evolutionary Genetic Analysis Uncovers Multiple Species with Distinct Habitat Preferences and Antibiotic Resistance Phenotypes in the Stenotrophomonas maltophilia Complex
Cited by: 26
Author(s): Luz Edith Ochoa-Sánchez, Pablo Vinuesa
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-92933-2

Exhaled volatilome analysis as a useful tool to discriminate asthma with other coexisting atopic diseases in women of childbearing age
Cited by: 6
Author(s): Rosa Alba Sola Martínez, Gema Lozano‐Terol, Julia Gallego‐Jara, Eva Morales, Esther Cantero‐Cano, Manuel Rolandi Sánchez-Solís, Luis García‐Marcos, Pedro Jiménez‐Guerrero, José Antonio Noguera-Velasco, Manuel Cánovas Díaz, Teresa De Diego
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0167747

Transcriptomic Changes in Liver of Young Bulls Caused by Diets Low in Mineral and Protein Contents and Supplemented with n-3 Fatty Acids and Conjugated Linoleic Acid
Cited by: 8
Author(s): Sara Pegolo, Alessio Cecchinato, Núria Mach, Massimiliano Babbucci, Marianna Pauletto, Luca Bargelloni, Stefano Schiavon, Giovanni Bittante
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-021-82306-0

Terroir and vintage discrimination of Malbec wines based on phenolic composition across multiple sites in Mendoza, Argentina
Cited by: 17
Author(s): Roy Urvieta, Gregory V. Jones, Fernando Buscema, Rubén Bottini, A. Fontana
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-81150-6

Welwitschia: Phylogeography of a living fossil, diversified within a desert refuge
Cited by: 10
Author(s): Norbert Jürgens, Imke Oncken, Jens Oldeland, Felicitas Gunter, Barbara Rudolph
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0028966

Understanding and Classifying Metabolite Space and Metabolite-Likeness
Cited by: 55
Author(s): Julio E. Peironcely, Theo H. Reijmers, L Coulier, Andreas Bender, Thomas Hankemeier
Software Mentions: 6
Published: almost 13 years ago

10.3390/ani10081267

Factors Affecting Canine Obesity Seem to Be Independent of the Economic Status of the Country—A Survey on Hungarian Companion Dogs
Cited by: 6
Author(s): Torda Orsolya Julianna, Kata Vékony, Junó Vanda Katalin, Péter Pongrácz
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-87886-5

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree
Cited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-97805-3

Differences and similarities in the conceptualization of COVID-19 and other diseases in the first Italian lockdown
Cited by: 6
Author(s): Claudia María, Ilenia Falcinelli, Arthur-Henri Michalland, Luca Tummolini, Anna M. Borghi
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0180322

Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches
Cited by: 6
Author(s): María Maqueda, Emma Roca, Daniel Brotons, José Manuel Nieto Soria, Alexandre Perera
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-020-61684-x

Metabolic Profiling Reveals Biochemical Pathways Responsible for Eelgrass Response to Elevated CO2 and Temperature
Cited by: 6
Author(s): Carmen C. Zayas-Santiago, Albert Rivas‐Ubach, Lih Kuo, Nicholas D. Ward, Richard C. Zimmerman
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-019-54447-w

A genomic predictor of lifespan in vertebrates
Cited by: 43
Author(s): Benjamin Mayne, Oliver Berry, Campbell R. Davies, Jessica Farley, Simon Jarman
Software Mentions: 6
Published: almost 5 years ago

10.3390/microorganisms8070982

Microbial Diversity Associated with Gwell, a Traditional French Mesophilic Fermented Milk Inoculated with a Natural Starter
Cited by: 10
Author(s): Lucas von Gastrow, Marie‐Noëlle Madec, Victoria Chuat, S. Lubac, Clémence Morinière, Sébastien Lê, Sylvain Santoni, Delphine Sicard, Florence Valence
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-019-56235-y

FABP4 and MMP9 levels identified as predictive factors for poor prognosis in patients with nonalcoholic fatty liver using data mining approaches and gene expression analysis
Cited by: 32
Author(s): Audrey Coilly, Christophe Desterke, Catherine Guettier, Didier Samuel, Franck Chiappini
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2014.00541

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
Cited by: 71
Author(s): Antje Gittel, Jiří Bárta, Iva Kohoutová, Jörg Schnecker, Birgit Wild, Petr Čapek, Christina Kaiser, Vigdis Torsvik, Andreas Richter, Christa Schleper, Tim Urich
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-019-41336-5

Female novelty and male status dynamically modulate ejaculate expenditure and seminal fluid proteome over successive matings in red junglefowl
Cited by: 9
Author(s): Aitor Álvarez-Fernández, Kirill Borziak, Grant C. McDonald, Steve Dorus, Tommaso Pizzari
Software Mentions: 6
Published: over 5 years ago

10.1186/s12920-019-0571-y

Stoichioproteomics reveal oxygen usage bias, key proteins and pathways in glioma
Cited by: 4
Author(s): Yuan Yin, Bo Li, Ke‐Jie Mou, Muhammad Tahir Khan, Aman Chandra Kaushik, Dong‐Qing Wei, Yujuan Zhang
Software Mentions: 6
Published: about 5 years ago

10.1186/s12934-016-0456-0

Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environments
Cited by: 24
Author(s): Thibault Nidelet, Pascale Brial, Carole Camarasa, Sylvie Dequin
Software Mentions: 6
Published: over 8 years ago

10.3389/fninf.2018.00036

Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction
Cited by: 32
Author(s): Stephen R. Pfohl, Renaid B. Kim, Grant Coan, Cassie S. Mitchell
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2019.02491

Dynamic Changes in the Microbiome and Mucosal Immune Microenvironment of the Lower Respiratory Tract by Influenza Virus Infection
Cited by: 30
Author(s): Liming Gu, Huixiong Deng, Zhihui Ren, Ying Zhao, Shun Yu, Yingzhu Guo, Jianping Dai, Xiaoxuan Chen, Kangsheng Li, Rui Li, Gefei Wang
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-019-39220-3

The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome Virus
Cited by: 9
Author(s): Sophie Dhorne–Pollet, Elisa Crisci, Núria Mach, Patricia Renson, Florence Jaffrézic, Guillemette Marot, Tatiana Maroilley, Marco Moroldo, Jérôme Lecardonnel, Fany Blanc, Nicolas Bertho, Olivier Bourry, Elisabetta Giuffra
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0233211

Molecular diversity and genetic structure of Saccharum complex accessions
Cited by: 15
Author(s): Carolina Medeiros, Thiago Willian Almeida Balsalobre, Monalisa Sampaio Carneiro
Software Mentions: 6
Published: over 4 years ago

10.1038/srep26947

Variation in serum biomarkers with sex and female hormonal status: implications for clinical tests
Cited by: 29
Author(s): Jordan M. Ramsey, Jason D. Cooper, Brenda W. J. H. Penninx, Sabine Bahn
Software Mentions: 6
Published: over 8 years ago

10.1038/srep21969

Culex quinquefasciatus larval microbiomes vary with instar and exposure to common wastewater contaminants
Cited by: 27
Author(s): Marcus J. Pennington, Sean M. Prager, William E. Walton, John T. Trumble
Software Mentions: 6
Published: over 8 years ago

10.3389/fcimb.2021.633573

Abundance and Expression of Shiga Toxin Genes in Escherichia coli at the Recto-Anal Junction Relates to Host Immune Genes
Cited by: 6
Author(s): Zhe Pan, Yanhong Chen, Tim A. McAllister, Michael G. Gänzle, Graham Plastow, Le Luo Guan
Software Mentions: 6
Published: over 3 years ago

10.3390/md19070357

Microalgae as Sustainable Bio-Factories of Healthy Lipids: Evaluating Fatty Acid Content and Antioxidant Activity
Cited by: 47
Author(s): Tiago Conde, Bruno Miguel Neves, Daniela Couto, Tânia Melo, Margarida Costa, Joana Silva, Pedro Domingues, M. Rosário M. Domingues
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0190393

Why rate when you could compare? Using the “EloChoice” package to assess pairwise comparisons of perceived physical strength
Cited by: 28
Author(s): Andrew P. Clark, Kate L. Howard, Andy Woods, Ian S. Penton-Voak, Christof Neumann
Software Mentions: 6
Published: almost 7 years ago

10.1073/pnas.2008890118

OCT4 induces embryonic pluripotency via STAT3 signaling and metabolic mechanisms
Cited by: 23
Author(s): Giuliano Giuseppe Stirparo, Agata Kurowski, Akira Yanagida, Lawrence E. Bates, Stanley E. Strawbridge, Siarhei Hladkou, Hannah Stuart, Thorsten Boroviak, José C.R. Silva, Jennifer Nichols
Software Mentions: 6
Published: almost 4 years ago

10.3390/plants9020197

Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping
Cited by: 19
Author(s): Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, D. Ganeva, D. Kostova
Software Mentions: 6
Published: almost 5 years ago

10.3390/plants9040545

Transcriptional Dynamics and Candidate Genes Involved in Pod Maturation of Common Bean (Phaseolus vulgaris L.)
Cited by: 3
Author(s): Cristina Gómez-Martín, Carmen Capel, Ana M. González, Ricardo Lebrón, Fernando J. Yuste‐Lisbona, Michael Hackenberg, José Luis Tejera Oliver, Marta Santalla, Rafael Lozano
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-018-37106-4

Carnivoran hunting style and phylogeny reflected in bony labyrinth morphometry
Cited by: 14
Author(s): Julia A. Schwab, Jürgen Kriwet, Gerhard Weber, Cathrin Pfaff
Software Mentions: 6
Published: almost 6 years ago

10.3390/insects12040367

Biological Strategies of Invasive Bark Beetles and Borers Species
Cited by: 3
Author(s): Denis A. Demidko, Natalia N. Demidko, Pavel V. Mikhaylov, Svetlana M. Sultson
Software Mentions: 6
Published: over 3 years ago

10.1002/cam4.3890

Normal tissue adjacent to tumor expression profile analysis developed and validated a prognostic model based on Hippo‐related genes in hepatocellular carcinoma
Cited by: 10
Author(s): Qingbo Pan, Fanbo Qin, Hanyu Yuan, Baoning He, Ni Yang, Yitong Zhang, Hong Ren, Yi Arial Zeng
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.7505

Valley‐scale hydrogeomorphology drives river fish assemblage variation in Mongolia
Cited by: 8
Author(s): Alain Maasri, Mark Pyron, Emily R. Arsenault, James H. Thorp, Bud Mendsaikhan, Flavia Tromboni, Mario Minder, Scott J. Kenner, John H. Costello, Sudeep Chandra, Amarbat Otgonganbat, Bazartseren Boldgiv
Software Mentions: 6
Published: over 3 years ago

10.15252/msb.20199156

Endoplasmic reticulum stress actively suppresses hepatic molecular identity in damaged liver
Cited by: 19
Author(s): Vanessa Dubois, Céline Gheeraert, Wouter Vankrunkelsven, Julie Dubois-Chevalier, Hélène Dehondt, Marie Bobowski-Gérard, Manjula Vinod, Francesco Paolo Zummo, Fabian Güiza, Maheul Ploton, Emilie Dorchies, Laurent Pineau, Alexis Boulinguiez, Emmanuelle Vallez, Eloïse Woitrain, Eric Baugé, Fanny Lalloyer, Christian Duhem, Nabil Rabhi, Ronald E. van Kesteren, Cheng Ming Chiang, Steve Lancel, Hélène Duez, Jean-Sébastien Annicotte, Réjane Paumelle, Ilse Vanhorebeek, Greet Van den Berghe, Bart Staels, Philippe Lefèbvre, Jérôme Eeckhoute
Software Mentions: 6
Published: over 4 years ago

Projects: cran: FactoMineR

Papers Mentioning FactoMineR 1,101