Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: BGLR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/BGLR

Bayesian Generalized Linear Regression
10 versions
Latest release: over 2 years ago
12 dependent packages
919 downloads last month

Papers Mentioning BGLR 197

10.1007/s11032-018-0802-5
Genomic prediction applied to high-biomass sorghum for bioenergy production
Cited by: 25
Author(s): Amanda Avelar de Oliveira, Maria Marta Pastina, Vander Filipe de Souza, R. A. da C. Parrella, R. W. Noda, M. L. F. Simeone, R. E. Schaffert, J. V. de Magalhães, C. M. B. Damasceno, Gabriel Rodrigues Alves Margarido
Software Mentions: 2
Published: over 6 years ago
10.3390/biology10080756
Evaluation of Genomic Prediction for Fusarium Head Blight Resistance with a Multi-Parental Population
Cited by: 7
Author(s): Wentao Zhang, Kerry Boyle, Anita L. Brûlé‐Babel, George Fedak, Peng Gao, Zeinab Robleh Djama, Brittany Polley, Richard D. Cuthbert, H. S. Randhawa, R. J. Graf, Fengying Jiang, François Eudes, Pierre R. Fobert
Software Mentions: 2
Published: over 3 years ago
10.1186/s12870-020-02403-6
Effect of trait’s expression level on single-step genomic evaluation of resistance to Dothistroma needle blight
Cited by: 13
Author(s): Jaroslav Klápště, Heidi S. Dungey, Natalie Graham, Emily Telfer
Software Mentions: 2
Published: over 4 years ago
10.1186/s12870-018-1360-z
Genomic prediction accuracy for switchgrass traits related to bioenergy within differentiated populations
Cited by: 11
Author(s): Jason D. Fiedler, Christina Lanzatella, Serge J. Edmé, Nathan A. Palmer, Gautam Sarath, Rob Mitchell, Christian M. Tobias
Software Mentions: 2
Published: over 6 years ago
10.1093/g3journal/jkab122
On the use of GBLUP and its extension for GWAS with additive and epistatic effects
Cited by: 8
Author(s): Jie Zhang, Fang Liu, Jochen C. Reif, Yong Jiang
Software Mentions: 2
Published: over 3 years ago
10.1093/g3journal/jkab160
Effectiveness of genomic selection for improving provitamin A carotenoid content and associated traits in cassava
Cited by: 7
Author(s): Williams Esuma, Alfred Ozimati, Peter Kulakow, Michael A. Gore, Marnin D. Wolfe, Ephraim Nuwamanya, Chiedozie Egesi, R. Kawuki
Software Mentions: 2
Published: over 3 years ago
10.1007/s00122-017-2897-1
Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat
Cited by: 72
Author(s): Philomin Juliana, Ravi P. Singh, Pawan Kumar Singh, José Crossa, Julio Huerta Espino, Caixia Lan, Sridhar Bhavani, Jessica Rutkoski, Jesse Poland, Gary C. Bergstrom, Mark E. Sorrells
Software Mentions: 2
Published: over 7 years ago
10.3390/ani10101793
Accuracies of Genomic Prediction for Growth Traits at Weaning and Yearling Ages in Yak
Cited by: 5
Author(s): Fei Ge, Jia Chen, Pengjia Bao, Xiaoyun Wu, Chunnian Liang, Ping Yan
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-020-6737-3
Effect of number of annual rings and tree ages on genomic predictive ability for solid wood properties of Norway spruce
Cited by: 11
Author(s): Linghua Zhou, Zhiqiang Chen, Lars E. Olsson, Thomas Grahn, Bo Karlsson, Harry X. Wu, Sven‐Olof Lundqvist, María Rosario García‐Gil
Software Mentions: 2
Published: over 4 years ago
10.1186/s12711-018-0379-9
Balanced selection on purebred and crossbred performance increases gain in crossbreds
Cited by: 7
Author(s): Hadi Esfandyari, Peer Berg, Anders Christian Sørensen
Software Mentions: 2
Published: over 6 years ago
10.1186/s12711-020-00531-z
Deep learning versus parametric and ensemble methods for genomic prediction of complex phenotypes
Cited by: 83
Author(s): Rostam Abdollahi-Arpanahi, Daniel Gianola, Francisco Peñagaricano
Software Mentions: 2
Published: over 4 years ago
10.1186/s12711-020-00544-8
Bayesian neural networks with variable selection for prediction of genotypic values
Cited by: 4
Author(s): Giel H. H. van Bergen, Pascal Duenk, Cornelis A. Albers, P. Bijma, M.P.L. Calus, Y.C.J. Wientjes, Hilbert J. Kappen
Software Mentions: 2
Published: over 4 years ago
10.1093/genetics/iyaa048
Additive genetic variance and covariance between relatives in synthetic wheat crosses with variable parental ploidy levels
Cited by: 0
Author(s): Laura Puhl, J. Crossa, S. Munilla, Paulino Pérez‐Rodríguez, Rodolfo Juan Carlos Cantet
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12864-016-2879-8
Performance of genomic prediction within and across generations in maritime pine
Cited by: 70
Author(s): Jérôme Bartholome, Joost van Heerwaarden, Fikret Isik, Christophe Boury, Marjorie Vidal, Christophe Plomion, Laurent Bouffier
Software Mentions: 2
Published: over 8 years ago
10.1186/s12864-019-5520-9
Genome Association Study for Visual Scores in Nellore Cattle Measured at Weaning
Cited by: 12
Author(s): Luis Carreño, Matilde da Conceição Pessoa, Rafael Espigolan, Luciana Takada, Tiago Bresolin, Lígia Cavani, Fernando Baldi, Roberto Carvalheiro, Lúcia Galvão de Albuquerque, Ricardo da Fonseca
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41437-018-0109-7
A singular value decomposition Bayesian multiple-trait and multiple-environment genomic model
Cited by: 6
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, J. Crossa, Kismiantini, Juan Manuel Ramírez-Alcaraz, Ravi P. Singh, Suchismita Mondal, Philomin Juliana
Software Mentions: 2
Published: over 6 years ago
10.1038/hortres.2016.70
An experimental validation of genomic selection in octoploid strawberry
Cited by: 71
Author(s): Salvador A. Gezan, Luis F. Osorio, Sujeet Verma, Vance M. Whitaker
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12863-018-0606-y
Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle
Cited by: 4
Author(s): Francesco Tiezzi, Maria E. Arceo, John B. Cole, Christian Maltecca
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-017-02602-6
Genomic Selection in Commercial Perennial Crops: Applicability and Improvement in Oil Palm (Elaeis guineensis Jacq.)
Cited by: 40
Author(s): Qi Bin Kwong, Ai Ling Ong, Chee Keng Teh, Fook Tim Chew, Martti T. Tammi, Sean Mayes, Harikrishna Kulaveerasingam, Suat Hui Yeoh, Jennifer Ann Harikrishna, David R. Appleton
Software Mentions: 2
Published: over 7 years ago
10.3389/fgene.2020.567757
Approximate Genome-Based Kernel Models for Large Data Sets Including Main Effects and Interactions
Cited by: 14
Author(s): Jaime Cuevas, Osval A. Montesinos-L֯ópez, Johannes W. R. Martini, Paulino Pérez‐Rodríguez, Morten Lillemo, José Crossa
Software Mentions: 2
Published: about 4 years ago
10.3389/fgene.2020.00316
Combining QTL Analysis and Genomic Predictions for Four Durum Wheat Populations Under Drought Conditions
Cited by: 21
Author(s): Meryem Zaïm, Hafssa Kabbaj, Zakaria Kehel, Gregor Gorjanc, Abdelkarim Filali‐Maltouf, Bouchra Belkadi, M. M. Nachit, Filippo M. Bassi
Software Mentions: 2
Published: over 4 years ago
10.3389/fgene.2021.643733
Improving Genomic Prediction for Seed Quality Traits in Oat (Avena sativa L.) Using Trait-Specific Relationship Matrices
Cited by: 12
Author(s): Malachy T. Campbell, Haixiao Hu, Trevor H. Yeats, Lauren J. Brzozowski, Melanie Caffe‐Treml, Lucı́a Gutiérrez, Kevin P. Smith, Mark E. Sorrells, Michael A. Gore, Jean Luc Jannink
Software Mentions: 2
Published: over 3 years ago
10.1534/g3.118.200273
Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato (<i>Solanum tuberosum</i>)
Cited by: 55
Author(s): Felix E. Enciso-Rodríguez, David S. Douches, Marco Lopez‐Cruz, Joseph Coombs, Gustavo de los Campos
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2018.01220
Genomic Prediction for 25 Agronomic and Quality Traits in Alfalfa (Medicago sativa)
Cited by: 35
Author(s): Jia Chen, Fuping Zhao, Xuemin Wang, Jianlin Han, Haiming Zhao, Guibo Liu, Zan Wang
Software Mentions: 1
Published: over 6 years ago
10.1534/g3.118.200391
Whole-Genome Multi-omic Study of Survival in Patients with Glioblastoma Multiforme
Cited by: 12
Author(s): Y. L. Bernal Rubio, Agustín González-Reymúndez, Kuan-Han H Wu, Corinne E. Griguer, Juan P. Steibel, Gustavo de los Campos, Andrea I. Doseff, Kathleen A. Gallo, Ana I. Vázquez
Software Mentions: 1
Published: about 6 years ago
10.1186/s12711-021-00658-7
Opportunities and limits of combining microbiome and genome data for complex trait prediction
Cited by: 14
Author(s): Miguel Pérez‐Enciso, Laura M. Zingaretti, Yuliaxis Ramayo-Caldas, Gustavo de los Campos
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0190271
Parent-progeny imputation from pooled samples for cost-efficient genotyping in plant breeding
Cited by: 17
Author(s): Frank Technow, Justin P. Gerke
Software Mentions: 1
Published: almost 7 years ago
10.1534/genetics.119.302324
Best Prediction of the Additive Genomic Variance in Random-Effects Models
Cited by: 8
Author(s): Nicholas Schreck, Hans‐Peter Piepho, Martin Schlather
Software Mentions: 1
Published: about 5 years ago
10.1534/g3.118.200961
Lost in Translation: On the Problem of Data Coding in Penalized Whole Genome Regression with Interactions
Cited by: 10
Author(s): Johannes W. R. Martini, Francisco Rosales, Ngoc-Thuy Ha, Johannes Heise, Valentin Wimmer, Thomas Kneib
Software Mentions: 1
Published: over 5 years ago
10.1534/genetics.120.303120
Deciphering Sex-Specific Genetic Architectures Using Local Bayesian Regressions
Cited by: 7
Author(s): Scott A Funkhouser, Ana I. Vázquez, Juan P. Steibel, Catherine W. Ernst, Gustavo de los Campos
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.119.400059
Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction
Cited by: 48
Author(s): Ivone de Bem Oliveira, M. D. V. de Resende, Luís Felipe Ventorim Ferrão, Rodrigo R. Amadeu, Jeffrey B. Endelman, Matias Kirst, Alexandre Siqueira Guedes Coelho, Patricio Muñoz
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0123818
Assessment of Whole-Genome Regression for Type II Diabetes
Cited by: 5
Author(s): Ana I. Vázquez, Yann C. Klimentidis, Emily J. Dhurandhar, Yogasudha Veturi, Paulino Paérez-Rodríguez
Software Mentions: 1
Published: over 9 years ago
10.3390/plants10010030
A Bioinformatics Pipeline to Identify a Subset of SNPs for Genomics-Assisted Potato Breeding
Cited by: 12
Author(s): Catja Selga, Alexander Koc, Aakash Chawade, Rodomiro Ortíz
Software Mentions: 1
Published: almost 4 years ago
10.3390/plants10061174
Genomic Prediction across Structured Hybrid Populations and Environments in Maize
Cited by: 4
Author(s): Dongdong Li, Zhenxiang Xu, Rong Gu, Pingxi Wang, Jialiang Xu, Dengxiang Du, Junjie Fu, Jianhua Wang, Hongwei Zhang, Guoying Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2018.00289
Incorporating Prior Knowledge of Principal Components in Genomic Prediction
Cited by: 0
Author(s): Sayed Mahdi Hosseini-Vardanjani, Mohammad Mahdi Shariati, Hossein Moradi Shahrebabak, Mojtaba Tahmoorespur
Software Mentions: 1
Published: over 6 years ago
10.1007/s00122-017-3011-4
Rice diversity panel provides accurate genomic predictions for complex traits in the progenies of biparental crosses involving members of the panel
Cited by: 28
Author(s): Manel Ben Hassen, Tuong-Vi Cao, Jérôme Bartholome, G. Orasen, Colombi Cinzia, J. J. R. Rakotomalala, L. Razafinimpiasa, Carola Leticia Bertone, Chiara Biselli, Andrea Volante, Francesca Desiderio, Laval Jacquin, Giampiero Valè, Nourollah Ahmadi
Software Mentions: 1
Published: about 7 years ago
10.3389/fgene.2020.573344
Single-Nucleotide Polymorphism Variations Associated With Specific Genes Putatively Identified Enhanced Genetic Predisposition for 305-Day Milk Yield in the Girolando Crossbreed
Cited by: 9
Author(s): Alex Silva da Cruz, Danilo Conrado Silva, Lysa Bernardes Minasi, Larissa Kamídia de Farias Teixeira, Flávia Melo Rodrigues, Cláudio Carlos da Silva, Adriana Santana do Carmo, Marcos Vinícius Gualberto Barbosa da Silva, Yuri Tani Utsunomiya, José Fernando Garcia, Aparecido Divino da Cruz
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2019.00590
Genetic Contribution to Variation in Blood Calcium, Phosphorus, and Alkaline Phosphatase Activity in Pigs
Cited by: 24
Author(s): Henry Reyer, Michael Oster, Dörte Wittenburg, Eduard Muráni, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2021.666740
Genomic Prediction of Two Complex Orthopedic Traits Across Multiple Pure and Mixed Breed Dogs
Cited by: 3
Author(s): Liping Jiang, Zhuo Li, Jessica J. Hayward, Kei Hayashi, Ursula Krotscheck, Rory J. Todhunter, Tao You, Meng Huang
Software Mentions: 1
Published: about 3 years ago
10.1186/s13007-018-0314-7
Bayesian functional regression as an alternative statistical analysis of high-throughput phenotyping data of modern agriculture
Cited by: 10
Author(s): Abelardo Montesinos‐López, Osval A. Montesinos-L֯ópez, Gustavo de los Campos, José Crossa, Juan Burgueño, Francisco Javier Luna-Vázquez
Software Mentions: 1
Published: over 6 years ago
10.1186/s13007-019-0388-x
Bayesian analysis and prediction of hybrid performance
Cited by: 38
Author(s): Filipe Couto Alves, Ítalo Stefanine Correia Granato, Giovanni Galli, Danilo Hottis Lyra, Roberto Fritsche‐Neto, Gustavo de los Campos
Software Mentions: 1
Published: almost 6 years ago
10.1534/g3.120.401194
Low Additive Genetic Variation in a Trait Under Selection in Domesticated Rice
Cited by: 8
Author(s): Nicholas G. Karavolias, Anthony J. Greenberg, Luz Stella Barrero, Yuxin Shi, Eliana Monteverde, Miguel A. Piñeros, Susan R. McCouch
Software Mentions: 1
Published: over 4 years ago
10.1186/s12863-015-0229-5
Evidence of Bos javanicus x Bos indicus hybridization and major QTLs for birth weight in Indonesian Peranakan Ongole cattle
Cited by: 24
Author(s): Hartati Hartati, Yuri Tani Utsunomiya, Tad S. Sonstegard, José Fernando Garcia, Jakaria Jakaria, Muladno Muladno
Software Mentions: 1
Published: over 9 years ago
10.1534/g3.120.401172
Genomic Prediction with Genotype by Environment Interaction Analysis for Kernel Zinc Concentration in Tropical Maize Germplasm
Cited by: 18
Author(s): Edna K. Mageto, J. Crossa, Paulino Pérez‐Rodríguez, Thanda Dhliwayo, Natalia Palacios-Rojas, Michael Lee, R.T. Guo, Félix San Vicente, Xuecai Zhang, Hindu Vemuri
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.120.401349
Genomic Prediction Enhanced Sparse Testing for Multi-environment Trials
Cited by: 55
Author(s): Diego Jarquín, Réka Howard, J. Crossa, Yoseph Beyene, Manje Gowda, Johannes W. R. Martini, Giovanny Covarrubias Pazaran, Juan Burgueño, Ángela Pacheco, Martín O. Grondona, Valentin Wimmer, B. M. Prasanna
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.120.401382
Effects of Different Strategies for Exploiting Genomic Selection in Perennial Ryegrass Breeding Programs
Cited by: 5
Author(s): Hadi Esfandyari, Dario Fè, Biructawit Bekele Tessema, L.L.G. Janss, Just Jensen
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2020.563393
Integration of Wet-Lab Measures, Milk Infrared Spectra, and Genomics to Improve Difficult-to-Measure Traits in Dairy Cattle Populations
Cited by: 9
Author(s): Alessio Cecchinato, Hugo Toledo-Alvarado, Sara Pegolo, Attilio Rossoni, Enrico Santus, Christian Maltecca, Giovanni Bittante, Francesco Tiezzi
Software Mentions: 1
Published: about 4 years ago
10.1007/s13253-015-0222-5
Incorporating Genetic Heterogeneity in Whole-Genome Regressions Using Interactions
Cited by: 28
Author(s): Gustavo de los Campos, Yogasudha Veturi, Ana I. Vázquez, Christina Lehermeier, Paulino Pérez‐Rodríguez
Software Mentions: 1
Published: about 9 years ago
10.1186/s40104-021-00555-5
Prediction of meat quality traits in the abattoir using portable near-infrared spectrometers: heritability of predicted traits and genetic correlations with laboratory-measured traits
Cited by: 6
Author(s): Simone Savoia, A. Albera, Alberto Brugiapaglia, Liliana Di Stasio, Alessio Cecchinato, Giovanni Bittante
Software Mentions: 1
Published: over 3 years ago
10.1093/jxb/eraa280
Leveraging genome-enabled growth models to study shoot growth responses to water deficit in rice
Cited by: 9
Author(s): Malachy T. Campbell, Alexandre Grondin, Harkamal Walia, Gota Morota
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2020.593897
Genome-Wide Prediction of Complex Traits in Two Outcrossing Plant Species Through Deep Learning and Bayesian Regularized Neural Network
Cited by: 21
Author(s): Carlos Maldonado, Freddy Mora‐Poblete, Rodrigo Iván Contreras‐Soto, Sunny Ahmar, Jen‐Tsung Chen, Antônio Teixeira do Amaral Júnior, Carlos Alberto Scapim
Software Mentions: 1
Published: almost 4 years ago
10.1093/g3journal/jkab112
Prediction of biological age and evaluation of genome-wide dynamic methylomic changes throughout human aging
Cited by: 3
Author(s): Mahmoud Amiri Roudbar, Seyedeh Fatemeh Mousavi, Siavash Salek Ardestani, Fernando Brito Lopes, Mehdi Momen, Daniel Gianola, Hasan Khatib
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2020.00197
Incorporating Genome-Wide Association Mapping Results Into Genomic Prediction Models for Grain Yield and Yield Stability in CIMMYT Spring Bread Wheat
Cited by: 53
Author(s): Deepmala Sehgal, Umesh R. Rosyara, Suchismita Mondal, Ravi P. Singh, Jesse Poland, Susanne Dreisigacker
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2018.01878
Genomic Selection for Ascochyta Blight Resistance in Pea
Cited by: 17
Author(s): Margaret A. Carpenter, D. S. Goulden, C. R. Woods, Susan Thomson, Fernand Kenel, T. J. Frew, Rebecca Cooper, Gail M. Timmerman-Vaughan
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0228724
On the usefulness of parental lines GWAS for predicting low heritability traits in tropical maize hybrids
Cited by: 19
Author(s): Giovanni Galli, Filipe Couto Alves, Júlia Silva Morosini, Roberto Fritsche‐Neto
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2017.00550
Genomic Selection for Drought Tolerance Using Genome-Wide SNPs in Maize
Cited by: 114
Author(s): Mittal Shikha, Arora Kanika, Atmakuri Ramakrishna Rao, Mallana Gowdra Mallikarjuna, H. S. Gupta, Nepolean Thirunavukkarasu
Software Mentions: 1
Published: over 7 years ago
10.3390/ani10091654
Genetic Parameters of Different FTIR-Enabled Phenotyping Tools Derived from Milk Fatty Acid Profile for Reducing Enteric Methane Emissions in Dairy Cattle
Cited by: 6
Author(s): Giovanni Bittante, Claudio Cipolat‐Gotet, Alessio Cecchinato
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2018.01934
Early Selection Enabled by the Implementation of Genomic Selection in Coffea arabica Breeding
Cited by: 42
Author(s): Tiago Vieira Sousa, Eveline Teixeira Caixeta, Emilly Ruas Alkimim, A. C. B. de Oliveira, Antônio Alves Pereira, Ney Sussumu Sakiyama, Laércio Zambolim, Marcos Deon Vilela de Resende
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2020.01197
Multi-Trait Genomic Prediction Improves Predictive Ability for Dry Matter Yield and Water-Soluble Carbohydrates in Perennial Ryegrass
Cited by: 26
Author(s): Sai Krishna Arojju, Mingshu Cao, M. Trolove, Brent Barrett, Courtney Inch, Colin Eady, Alan V. Stewart, Marty J. Faville
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0217516
Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains
Cited by: 29
Author(s): Julien Frouin, Axel Labeyrie, Arnaud Boisnard, Gian Attilio Sacchi, Nourollah Ahmadi
Software Mentions: 1
Published: over 5 years ago
10.3390/genes10070553
A Guide for Using Deep Learning for Complex Trait Genomic Prediction
Cited by: 86
Author(s): Miguel Pérez‐Enciso, Laura M. Zingaretti
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-93120-z
Bayesian ridge regression shows the best fit for SSR markers in Psidium guajava among Bayesian models
Cited by: 11
Author(s): Flávia Alves da Silva, Alexandre Pío Viana, Caio Cézar Guedes Corrêa, Eileen Azevedo Santos, Julie Anne Vieira Salgado de Oliveira, José Daniel Gomes Andrade, Rodrigo Moreira Ribeiro, Leonardo Siqueira Glória
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-017-3781-8
Genome-enabled predictions for fruit weight and quality from repeated records in European peach progenies
Cited by: 37
Author(s): Filippo Biscarini, Nelson Espinoza N., M.C.A.M. Bink, Pere Arús, María José Aranzana, Ignazio Verde, Simona Micali, Thierry Pascal, Bénédicte Quilot-Turion, Patrick Lambert, Cássia da Silva Linge, Igor Pacheco, D. Bassi, Alessandra Stella, Laura Rossini
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2020.583277
Accurate Prediction of a Quantitative Trait Using the Genes Controlling the Trait for Gene-Based Breeding in Cotton
Cited by: 13
Author(s): Yunhua Liu, Xu Yang, Meiping Zhang, Yanru Cui, Sing‐Hoi Sze, Clint Smith, Shizhong Xu, Hongbin Zhang
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2021.672417
Understanding the Effectiveness of Genomic Prediction in Tetraploid Potato
Cited by: 12
Author(s): Stefan Wilson, Chaozhi Zheng, Chris Maliepaard, Henk Mulder, R.G.F. Visser, Ate van der Burgt, Fred van Eeuwijk
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.690059
Genetic Dissection of Grain Yield of Maize and Yield-Related Traits Through Association Mapping and Genomic Prediction
Cited by: 16
Author(s): Jian Ma, Yongsong Cao
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-018-5256-y
Accuracy of genomic selection for growth and wood quality traits in two control-pollinated progeny trials using exome capture as the genotyping platform in Norway spruce
Cited by: 66
Author(s): Zhiqiang Chen, John Baison, Peng Jin, Bo Karlsson, Bengt Andersson, Johan Westin, María Rosario García‐Gil, Harry X. Wu
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0171254
Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses
Cited by: 54
Author(s): Tanguy Lafarge, Crisanta Sunio Bueno, Julien Frouin, Laval Jacquin, B. Courtois, Nourollah Ahmadi
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2021.638520
Target Population of Environments for Wheat Breeding in India: Definition, Prediction and Genetic Gains
Cited by: 23
Author(s): Leonardo Crespo‐Herrera, José Crossa, Julio Huerta‐Espino, Suchismita Mondal, Velu Govindan, Philomin Juliana, Mateo Vargas, Paulino Pérez‐Rodríguez, Arun Kumar Joshi, Hans J. Braun, Ravi P. Singh
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2018.00195
Prediction of Complex Traits: Robust Alternatives to Best Linear Unbiased Prediction
Cited by: 16
Author(s): Daniel Gianola, Alessio Cecchinato, Hugo Naya, Chris‐Carolin Schön
Software Mentions: 1
Published: over 6 years ago
10.1186/s12711-016-0188-y
Genomic prediction of breeding values for carcass traits in Nellore cattle
Cited by: 46
Author(s): Gerardo Alves Fernandes Júnior, Guilherme J. M. Rosa, Bruno D. Valente, Roberto Carvalheiro, Fernando Baldi, Diogo Anastácio Garcia, Daniel Gustavo Mansan Gordo, Rafael Espigolan, Luciana Takada, Rafael Lara Tonussi, Willian Bruno Fernandes de Andrade, Ana Fabrícia Braga Magalhães, Luis Artur Loyola Chardulo, Humberto Tonhati, Lúcia Galvão de Albuquerque
Software Mentions: 1
Published: almost 9 years ago
10.3389/fpls.2019.01502
Empirical Comparison of Tropical Maize Hybrids Selected Through Genomic and Phenotypic Selections
Cited by: 42
Author(s): Yoseph Beyene, Manje Gowda, Michael Olsen, Kelly R. Robbins, Paulino Pérez‐Rodríguez, Gregorio Alvarado, Kate Dreher, Star Yanxin Gao, Stephen Mugo, B. M. Prasanna, José Crossa
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2021.685488
Application of Genomic Selection at the Early Stage of Breeding Pipeline in Tropical Maize
Cited by: 15
Author(s): Yoseph Beyene, Manje Gowda, Paulino Pérez‐Rodríguez, Michael Olsen, Kelly R. Robbins, Juan Burgueño, B. M. Prasanna, José Crossa
Software Mentions: 1
Published: over 3 years ago
10.1186/s12711-016-0187-z
Differential contribution of genomic regions to marked genetic variation and prediction of quantitative traits in broiler chickens
Cited by: 22
Author(s): Rostam Abdollahi-Arpanahi, Gota Morota, Bruno D. Valente, Andreas Kranis, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 1
Published: almost 9 years ago
10.1007/s00122-020-03744-4
Genetic dissection of Striga hermonthica (Del.) Benth. resistance via genome-wide association and genomic prediction in tropical maize germplasm
Cited by: 16
Author(s): Manje Gowda, Dan Makumbi, Biswanath Das, Christine Nyaga, Titus Kosgei, José Crossa, Yoseph Beyene, Osval A. Montesinos-L֯ópez, Michael Olsen, B. M. Prasanna
Software Mentions: 1
Published: almost 4 years ago
10.1111/eva.13076
Genomic selection for resistance to spruce budworm in white spruce and relationships with growth and wood quality traits
Cited by: 17
Author(s): Jean Beaulieu, Simon Nadeau, Chen Ding, José M. Celedón, Aïda Azaiez, Carol Ritland, Jean‐Philippe Laverdière, Marie Deslauriers, Gregory W. Adams, M. S. Fullarton, Jöerg Bohlmann, P. Lenz, Jean Bousquet
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.114.016188
Threshold Models for Genome-Enabled Prediction of Ordinal Categorical Traits in Plant Breeding
Cited by: 41
Author(s): Osval A. Montesinos‐López, Abelardo Montesinos‐López, Paulino Pérez‐Rodríguez, Gustavo de los Campos, Kent M. Eskridge, J. Crossa
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12711-016-0213-1
Incorporating parent-of-origin effects in whole-genome prediction of complex traits
Cited by: 8
Author(s): Yaodong Hu, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 1
Published: over 8 years ago
10.1002/fes3.52
GplusE: beyond genomic selection
Cited by: 18
Author(s): Ian Mackay, Eric S. Ober, John M. Hickey
Software Mentions: 1
Published: over 9 years ago
10.1534/g3.115.021154
Genomic-Enabled Prediction of Ordinal Data with Bayesian Logistic Ordinal Regression
Cited by: 22
Author(s): Osval A. Montesinos‐López, Abelardo Montesinos‐López, J. Crossa, Juan Burgueño, Kent M. Eskridge
Software Mentions: 1
Published: about 9 years ago
10.1534/g3.116.028118
Genomic Bayesian Prediction Model for Count Data with Genotype × Environment Interaction
Cited by: 24
Author(s): Abelardo Montesinos‐López, Osval A. Montesinos-L֯ópez, José Crossa, Juan Burgueño, Kent M. Eskridge, Esteban Falconí-Castillo, Xinyao He, Pawan Kumar Singh, Karen A. Cichy
Software Mentions: 1
Published: over 8 years ago
10.1534/g3.116.031443
Prospects of Genomic Prediction in the USDA Soybean Germplasm Collection: Historical Data Creates Robust Models for Enhancing Selection of Accessions
Cited by: 70
Author(s): Diego Jarquín, James E. Specht, Aaron J. Lorenz
Software Mentions: 1
Published: over 8 years ago
10.1534/g3.116.032268
Assessing Predictive Properties of Genome-Wide Selection in Soybeans
Cited by: 56
Author(s): Alencar Xavier, William M. Muir, Katy Martin Rainey
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0208871
Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice
Cited by: 44
Author(s): Aditi Bhandari, Jérôme Bartholome, Tuong-Vi Cao-Hamadoun, Nilima Kumari, Julien Frouin, Arvind Kumar, Nourollah Ahmadi
Software Mentions: 1
Published: over 5 years ago
10.1534/g3.116.033381
Cross-Validation Without Doing Cross-Validation in Genome-Enabled Prediction
Cited by: 36
Author(s): Daniel Gianola, Chris‐Carolin Schön
Software Mentions: 1
Published: about 8 years ago
10.1534/g3.116.034256
Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and <i>Arabidopsis</i>
Cited by: 21
Author(s): Daniel Gianola, María Inés Fariello, Hugo Naya, Chris‐Carolin Schön
Software Mentions: 1
Published: about 8 years ago
10.1534/g3.116.035584
Bayesian Genomic Prediction with Genotype <b>×</b> Environment Interaction Kernel Models
Cited by: 114
Author(s): Jaime Cuevas, José Crossa, Osval A. Montesinos-L֯ópez, Juan Burgueño, Paulino Pérez‐Rodríguez, Gustavo de los Campos
Software Mentions: 1
Published: almost 8 years ago
10.1534/g3.116.036251
Genomic Prediction with Pedigree and Genotype × Environment Interaction in Spring Wheat Grown in South and West Asia, North Africa, and Mexico
Cited by: 44
Author(s): Sivakumar Sukumaran, J. Crossa, Diego Jarquín, Marta S. Lopes, M.P. Reynolds
Software Mentions: 1
Published: almost 8 years ago
10.1534/g3.117.042341
Genomic-Enabled Prediction in Maize Using Kernel Models with Genotype × Environment Interaction
Cited by: 83
Author(s): Massáine Bandeira e Sousa, Jaime Cuevas, Evellyn Giselly de Oliveira Couto, Paulino Pérez‐Rodríguez, Diego Jarquín, Roberto Fritsche‐Neto, Juan Burgueño, José Crossa
Software Mentions: 1
Published: over 7 years ago
10.1534/g3.117.043141
Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population
Cited by: 63
Author(s): Xuecai Zhang, Paulino Pérez‐Rodríguez, Juan Burgueño, Michael Olsen, Edward S. Buckler, G. N. Atlin, Boddupalli M. Prasanna, Mateo Vargas, Félix San Vicente, J. Crossa
Software Mentions: 1
Published: over 7 years ago
10.1186/s12711-017-0340-3
Influence of epistasis on response to genomic selection using complete sequence data
Cited by: 21
Author(s): Natalia Soledad Forneris, Zulma Vitezica, Andrés Legarra, Miguel Pérez‐Enciso
Software Mentions: 1
Published: about 7 years ago
10.1111/eva.12823
Multi‐trait genomic selection for weevil resistance, growth, and wood quality in Norway spruce
Cited by: 66
Author(s): P. Lenz, Simon Nadeau, Marie‐Josée Mottet, Martin Perron, Nathalie Isabel, Jean Beaulieu, Jean Bousquet
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0210442
Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle
Cited by: 21
Author(s): Xiaoqiao Wang, Jianyin Miao, Tianpeng Chang, Jiangwei Xia, Binxin An, Yan Li, Lingyang Xu, Lupei Zhang, Xue Gao, Junya Li, Huijiang Gao
Software Mentions: 1
Published: over 5 years ago
10.1534/g3.117.300548
Haplotype-Based Genome-Wide Prediction Models Exploit Local Epistatic Interactions Among Markers
Cited by: 42
Author(s): Yong Jiang, Renate Schmidt, Jochen C. Reif
Software Mentions: 1
Published: over 6 years ago
10.1534/g3.118.200140
Historical Datasets Support Genomic Selection Models for the Prediction of Cotton Fiber Quality Phenotypes Across Multiple Environments
Cited by: 24
Author(s): Washington J. Gapare, Shiming Liu, Warren C. Conaty, Qian Zhu, Vanessa Gillespie Gillespie, Danny Llewellyn, Warwick N. Stiller, Iain W. Wilson
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2020.499094
Marker Selection in Multivariate Genomic Prediction Improves Accuracy of Low Heritability Traits
Cited by: 20
Author(s): Jaroslav Klápště, Heidi S. Dungey, Emily Telfer, Mari Suontama, Natalie Graham, Yongjun Li, Russell B. McKinley
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.118.200098
Genomic Prediction Accounting for Genotype by Environment Interaction Offers an Effective Framework for Breeding Simultaneously for Adaptation to an Abiotic Stress and Performance Under Normal Cropping Conditions in Rice
Cited by: 29
Author(s): Manel Ben Hassen, Jérôme Bartholome, Giampiero Valè, Tuong-Vi Cao, Nourollah Ahmadi
Software Mentions: 1
Published: over 6 years ago