cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1038/srep16269

Substrates of the ASB2α E3 ubiquitin ligase in dendritic cells
Cited by: 10
Author(s): Camille A. Spinner, Sandrine Uttenweiler-Joseph, Arnaud Métais, Alexandre Stella, Odile Burlet‐Schiltz, Christel Moog-Lutz, Isabelle Lamsoul, Pierre G. Lutz
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16305

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles
Cited by: 102
Author(s): Flávia Vischi Winck, Ana Carolina Prado Ribeiro, Romênia R. Domingues, Ling Liu, Diego Mauricio Riaño-Pachón, César Rivera, Thaís Bianca Brandão, Adriele Ferreira Gouvêa, Alan Roger Santos‐Silva, Ricardo D. Coletta, Adriana Franco Paes Leme
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep20043

Alterations of the cytoskeleton in human cells in space proved by life-cell imaging
Cited by: 88
Author(s): Thomas J. Corydon, Sascha Kopp, Markus Wehland, Markus Braun, Andreas Schütte, T. Mayer, Thomas Hülsing, Hergen Oltmann, Burkhard Schmitz, Ruth Hemmersbach, Daniela Grimm
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20108

Acetylome analysis reveals the involvement of lysine acetylation in biosynthesis of antibiotics in Bacillus amyloliquefaciens
Cited by: 44
Author(s): Lin Liu, Guangyuan Wang, Limin Song, Binna Lv, Wenxing Liang
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22675

A covalent and cleavable antibody-DNA conjugation strategy for sensitive protein detection via immuno-PCR
Cited by: 65
Author(s): Jessie A.G.L. van Buggenum, Jan P. Gerlach, Selma Eising, Lise Schoonen, Roderick A. P. M. van Eijl, Sabine E.J. Tanis, Mark Hogeweg, Nina C. Hubner, Jan C. M. van Hest, Kimberly M. Bonger, Klaas W. Mulder
Software Mentions: 1
Published: over 10 years ago

10.1038/srep22635

Quantitative proteomics study of the neuroprotective effects of B12 on hydrogen peroxide-induced apoptosis in SH-SY5Y cells
Cited by: 26
Author(s): Liang Zhong, Juntuo Zhou, Xi Chen, Yonggen Lou, Dan Liú, Xiajuan Zou, Bin Yang, Yuxin Yin, Yan Pan
Software Mentions: 1
Published: over 10 years ago

10.1038/srep23530

Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes
Cited by: 8
Author(s): Nerea Osinalde, Virginia Sánchez-Quiles, Blagoy Blagoev, Irina Kratchmarova
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21158

Analysis of proteome dynamics inside the silk gland lumen of Bombyx mori
Cited by: 36
Author(s): Zhaoming Dong, Yan Zhang, Qianru Song, Xiaolu Zhang, Pengchao Guo, Dandan Wang, Qingyou Xia
Software Mentions: 1
Published: over 10 years ago

10.1038/srep25518

An Evaluation of Blood Compatibility of Silver Nanoparticles
Cited by: 146
Author(s): He Huang, Wenjia Lai, Menghua Cui, Ling Liang, Yuchen Lin, Qiaojun Fang, Ying Liu, Liming Xie
Software Mentions: 1
Published: over 10 years ago

10.1038/srep26557

FAM83H and casein kinase I regulate the organization of the keratin cytoskeleton and formation of desmosomes
Cited by: 40
Author(s): Tetsurō Kuga, Mitsuho Sasaki, Taisei Mikami, Y. Miake, Jun Adachi, Shimizu Maiko, Youhei Saito, Minako Koura, Yasunori Takeda, Junichiro Matsuda, Takeshi Tomonaga, Yuji Nakayama
Software Mentions: 1
Published: over 10 years ago

10.1038/srep28321

Transformed MDCK cells secrete elevated MMP1 that generates LAMA5 fragments promoting endothelial cell angiogenesis
Cited by: 26
Author(s): Shashi K. Gopal, David W. Greening, Hong Zhu, Richard J. Simpson, Rommel A. Mathias
Software Mentions: 1
Published: over 10 years ago

10.1038/srep28631

Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications
Cited by: 32
Author(s): Nevena Cvetešić, Maja Šemanjski, Boumediene Soufi, Karsten Krug, Ita Gruić-Sovulj, Boris Maček
Software Mentions: 1
Published: over 10 years ago

10.1038/srep29660

Annexin A1 contributes to pancreatic cancer cell phenotype, behaviour and metastatic potential independently of Formyl Peptide Receptor pathway
Cited by: 57
Author(s): Raffaella Belvedere, Valentina Bizzarro, Giovanni Forte, Fabrizio Dal Piaz, Luca Parente, Antonello Petrella
Software Mentions: 1
Published: about 10 years ago

10.1038/srep29897

Acetylome analysis reveals the involvement of lysine acetylation in diverse biological processes in Phytophthora sojae
Cited by: 32
Author(s): Delong Li, Binna Lv, Lei Tan, Qiwen Yang, Wenxing Liang
Software Mentions: 1
Published: about 10 years ago

10.1038/srep29759

Glaucoma related Proteomic Alterations in Human Retina Samples
Cited by: 44
Author(s): Sebastian Funke, Natarajan Perumal, Stefanie Beck, Silke Gabel-Scheurich, Carsten Schmelter, Julia Teister, Claudia Gerbig, Oliver W. Gramlich, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: about 10 years ago

10.1038/srep29629

Proteomics analysis of human tears from aqueous-deficient and evaporative dry eye patients
Cited by: 88
Author(s): Natarajan Perumal, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31078

The N-myristoylome of Trypanosoma cruzi
Cited by: 20
Author(s): Adam J. Roberts, Alan H. Fairlamb
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31697

Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation
Cited by: 231
Author(s): Ella Nukarinen, Thomas Nägele, Lorenzo Pedrotti, Bernhard Wurzinger, Andrea Mair, Ramona Landgraf, Frederik Börnke, Johannes Hanson, Markus Teige, Elena Baena-González, Wolfgang Dröge‐Laser, Wolfram Weckwerth
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31811

Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells
Cited by: 6
Author(s): Yajun Xie, Jinlong Wang, Yuanya Zhang, Xiaofei Liu, Xiaorong Wang, Kehui Liu, Xiahe Huang, Yingchun Wang
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32518

Integrated proteomics and metabolomics analysis of rat testis: Mechanism of arsenic-induced male reproductive toxicity
Cited by: 62
Author(s): Qingyu Huang, Liang Luo, Ambreen Alamdar, Jie Zhang, Liangpo Liu, Meiping Tian, Syed Ali Musstjab Akber Shah Eqani, Heqing Shen
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32511

iTRAQ-based proteomic analysis of plasma reveals abnormalities in lipid metabolism proteins in chronic kidney disease-related atherosclerosis
Cited by: 20
Author(s): Magdalena Łuczak, Dorota Formanowicz, Łukasz Marczak, Joanna Suszyńska-Zajczyk, Elżbieta Pawliczak, Maria Wanic-Kossowska, Maciej Stobiecki
Software Mentions: 1
Published: about 10 years ago

10.1038/srep34255

Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells
Cited by: 71
Author(s): Violette Gautier, Corinne Cayrol, Dorian Farache, Stéphane Roga, Bernard Monsarrat, Odile Burlet‐Schiltz, Anne Gonzalez de Peredo, Jean-Philippe Girard
Software Mentions: 1
Published: about 10 years ago

10.1038/srep35306

Ergothioneine Biosynthesis and Functionality in the Opportunistic Fungal Pathogen, Aspergillus fumigatus
Cited by: 52
Author(s): Kevin J. Sheridan, Beatrix E. Lechner, Grainne O’ Keeffe, Markus A. Keller, Ernst R. Werner, Herbert Lindner, Gary W. Jones, Hubertus Haas, Seán Doyle
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36109

Integrative omics connects N-glycoproteome-wide alterations with pathways and regulatory events in induced pluripotent stem cells
Cited by: 2
Author(s): Putty‐Reddy Sudhir, Madireddy Pavana Kumari, Wei-Ting Hsu, Chein‐Hung Chen, Hung‐Chih Kuo, Chung-Hsuan Chen
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36338

Detailed Analysis of Protein Topology of Extracellular Vesicles–Evidence of Unconventional Membrane Protein Orientation
Cited by: 106
Author(s): Aleksander Cvjetkovic, Su Chul Jang, Barbora Konečná, Johanna L. Höög, Carina Sihlbom, Cecilia Lässer, Jan Lötvall
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep37478

Crosstalk among proteome, acetylome and succinylome in colon cancer HCT116 cell treated with sodium dichloroacetate
Cited by: 21
Author(s): Da‐Yuan Zhu, Lidan Hou, Bin Hu, Hang Zhao, Jie Sun, Jianhua Wang, Xiangjun Meng
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep38298

First insight into the proteome landscape of the porcine short posterior ciliary arteries: Key signalling pathways maintaining physiologic functions
Cited by: 9
Author(s): Caroline Manicam, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus, Adrian Gericke
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep40756

A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation
Cited by: 50
Author(s): Lucía Pirone, Wendy Xolalpa, Jón Otti Sigurðsson, Juanma Ramírez, Coralia Pérez, Monika González, Ainara Ruiz de Sabando, Félix Elortza, Manuel Sánchez Rodríguez, Ugo Mayor, Jesper V. Olsen, Rosa Barrio, James D. Sutherland
Software Mentions: 1
Published: over 9 years ago

10.1038/srep40852

Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network
Cited by: 28
Author(s): Jie Gao, Sheng Zhang, Wei He, Xiuhong Shao, Chunyu Li, Wei YueRong, Guiming Deng, Ruibin Kuang, Chunhua Hu, Ganjun Yi, Qiaosong Yang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep41408

A novel approach to analyze lysosomal dysfunctions through subcellular proteomics and lipidomics: the case of NPC1 deficiency
Cited by: 89
Author(s): Arun Kumar Tharkeshwar, Jesse Trekker, Wendy Vermeire, Jarne Pauwels, Ragna Sannerud, David A. Priestman, Daniëlle te Vruchte, Katlijn Vints, Pieter Baatsen, Jean-Paul Decuypere, Huiqi Lu, Shaun Martin, Peter Vangheluwe, Johannes V. Swinnen, Liesbet Lagae, Francis Impens, Frances M. Platt, Kris Gevaert, Wim Annaert
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43858

A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations
Cited by: 19
Author(s): Alexander D. Giddey, Elise de Kock, Kehilwe C. Nakedi, Shaun Garnett, Andrew J. M. Nel, Nelson C. Soares, Jonathan M. Blackburn
Software Mentions: 1
Published: over 9 years ago

10.1038/srep44611

The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2
Cited by: 24
Author(s): Kamil Sklodowski, Janin Riedelsberger, Natalia Raddatz, Gonzalo Riadi, Julio Caballero, Isabelle Chérel, Waltraud X. Schulze, Alexander Graf, Ingo Drèyer
Software Mentions: 1
Published: over 9 years ago

10.1038/srep46455

Quantitative analyses of the global proteome and phosphoproteome reveal the different impacts of propofol and dexmedetomidine on HT22 cells
Cited by: 5
Author(s): Honggang Zhang, Juan Ye, Zhaomei Shi, Chen Bu, Feichao Bao
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00841-1

Systematic Synergy of Glucose and GLP-1 to Stimulate Insulin Secretion Revealed by Quantitative Phosphoproteomics
Cited by: 5
Author(s): Jia-shu Tang, Qing-run Li, Jiaming Li, Jiarui Wu, Rong Zeng
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02362-3

Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
Cited by: 35
Author(s): Magali Lago, Véronique Monteil, Thibaut Douché, Julien Guglielmini, Alexis Criscuolo, Corinne Maufrais, Mariette Matondo, Françoise Norel
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03369-6

First comprehensive proteome analysis of lysine crotonylation in seedling leaves of Nicotiana tabacum
Cited by: 49
Author(s): Hangjun Sun, Xiaowei Liu, Fangfang Li, Wei Li, Jing Zhang, Zhixin Xiao, Lili Song, Ying Liu, Fenglong Wang, Jinguang Yang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-05736-9

TKI-addicted ROS1-rearranged cells are destined to survival or death by the intensity of ROS1 kinase activity
Cited by: 9
Author(s): Hideki Ogura, Yuka Nagatake-Kobayashi, Jun Adachi, Takeshi Tomonaga, Naoya Fujita, Ryohei Katayama
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-07999-8

The [PSI +] yeast prion does not wildly affect proteome composition whereas selective pressure exerted on [PSI +] cells can promote aneuploidy
Cited by: 12
Author(s): Patrick H. W. Chan, Lisa Lee, Erin Kim, Tony Hui, Nikolay Stoynov, Roy Nassar, Michelle Moksa, Dale M. Cameron, Martin Hirst, Joerg Gsponer, Thibault Mayor
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-07109-8

Differential oxidation of protein-tyrosine phosphatases during zebrafish caudal fin regeneration
Cited by: 10
Author(s): Wei Wu, Alexander James Hale, Simone Lemeer, Jeroen den Hertog
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-08975-y

Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression
Cited by: 13
Author(s): Gyrid Nygaard, Lars Herfindal, Kathrine Sivertsen Åsrud, Ronja Bjørnstad, Reidun Kristin Kopperud, Eystein Oveland, Frode S. Berven, Lene Elisabeth Myhren, Erling A. Høivik, Turid Helen Felli Lunde, Marit Bakke, Stein Ove Døskeland, Frode Selheim
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-11643-w

Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry
Cited by: 23
Author(s): Maaike Rijkers, Bart L. van den Eshof, Pieter F. van der Meer, Floris P.J. van Alphen, Dirk de Korte, Frank W.G. Leebeek, Alexander B. Meijer, Jan Voorberg, A.J. Gerard Jansen
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12574-2

Knockout of the epilepsy gene Depdc5 in mice causes severe embryonic dysmorphology with hyperactivity of mTORC1 signalling
Cited by: 38
Author(s): James Hughes, Ruby Dawson, Melinda N Tea, Dale McAninch, Sandra Piltz, Dominique Jackson, Laura Stewart, Michael G. Ricos, Leanne M. Dibbens, Natasha L. Harvey, Paul Q. Thomas
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13027-6

Annexin-enriched osteoblast-derived vesicles act as an extracellular site of mineral nucleation within developing stem cell cultures
Cited by: 47
Author(s): Owen G. Davies, Sophie C. Cox, Richard L. Williams, Dimitra Tsaroucha, Ronan M. Dorrepaal, Mark P. Lewis, Liam M. Grover
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13092-x

Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics
Cited by: 37
Author(s): Takashi Shiromizu, Hideaki Kume, Mimiko Ishida, Jun Adachi, Masayuki Kano, Hisahiro Matsubara, Takeshi Tomonaga
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-14078-5

Crosstalk between proteins expression and lysine acetylation in response to patulin stress in Rhodotorula mucilaginosa
Cited by: 16
Author(s): Xizhong Zheng, Qiya Yang, Lina Zhao, Maurice Tibiru Apaliya, Xiaoyun Zhang, Hongyin Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14285-0

Localised genetic heterogeneity provides a novel mode of evolution in dsDNA phages
Cited by: 5
Author(s): Damian Magill, Phillip A. Kucher, В. Н. Крылов, Е. А. Плетенева, John P. Quinn, Leonid Kulakov
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14460-3

Modelling acrylamide acute neurotoxicity in zebrafish larvae
Cited by: 35
Author(s): Eva Prats, Cristian Gómez‐Canela, Shani Ben-Lulu, Tamar Ziv, Francesc Padrós, Daniel Tornero, Natàlia García-Reyero, Romà Tauler, Arie Admon, Demetrio Raldúa
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14477-8

Involvement of the Vitamin D Receptor in Energy Metabolism Revealed by Profiling of Lysine Succinylome of White Adipose Tissue
Cited by: 7
Author(s): Sileny Han, Yan Lou, Yu Fu, Yalin Zhang, Ning Liu, Zuwang Liu, Yanyan Zhou, Juan Kong
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15655-4

Large-scale identification of lysine acetylated proteins in vegetative hyphae of the rice blast fungus
Cited by: 11
Author(s): Xiaomei Sun, Zhigang Li, Huan Liu, Jun Yang, Wenxing Liang, You-Liang Peng, Jinguang Huang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15194-y

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway
Cited by: 49
Author(s): Imke K. Mandemaker, Loes van Cuijk, Roel C. Janssens, Hannes Lans, Karel Bezstarosti, Jan H.J. Hoeijmakers, Jeroen Demmers, Wim Vermeulen, Jürgen A. Marteijn
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15854-z

Proteome-wide identification of lysine 2-hydroxyisobutyrylation reveals conserved and novel histone modifications in Physcomitrella patens
Cited by: 32
Author(s): Zhiming Yu, Jun Ni, Wei Sheng, Zhikun Wang, Yuhuan Wu
Software Mentions: 1
Published: almost 9 years ago

10.7150/thno.61832

Multi-omic profiling of plasma reveals molecular alterations in children with COVID-19
Cited by: 25
Author(s): Chong Wang, Xufang Li, Wanshan Ning, Sitang Gong, Fengxia Yang, Chunxiao Fang, Yu Gong, Di Wu, Mingbin Huang, Yujie Gou, Shanshan Fu, Yujie Ren, Ruyi Yang, Yang Qiu, Yu Xue, Yi Xu, Xi Zhou
Software Mentions: 1
Published: almost 6 years ago

10.3390/toxins9100304

Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates
Cited by: 6
Author(s): Valérie Bouchez, Thibaut Douché, Mélody Dazas, Sophie Delaplane, Mariette Matondo, Julia Chamot‐Rooke, Nicole Guiso
Software Mentions: 1
Published: about 9 years ago

10.3390/toxins10070304

Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles
Cited by: 20
Author(s): Jiangqi Qu, Liping Shen, Meng Zhao, Wentong Li, Chengxia Jia, Hua Zhu, Qingjing Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins11020111

The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro
Cited by: 3
Author(s): Alexis Voegele, Mirko Sadi, Dorothée Raoux-Barbot, Thibaut Douché, Mariette Matondo, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins12080500

Evaluation of Antifungal Activity of Naja pallida and Naja mossambica Venoms against Three Candida Species
Cited by: 6
Author(s): Ewelina Kuna, Aleksandra Bocian, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Anna Lewińska, Maciej Wnuk
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12120792

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora
Cited by: 4
Author(s): Olivier Tremblay, Zachary Thow, A. Rod Merrill
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11248-017-0027-0

Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse
Cited by: 2
Author(s): Vı́tězslav Křı́ž, Michaela Krausová, Petra Burešová, Jan Dobeš, Dušan Hrčkulák, Oľga Babošová, Jiří Švec, Vladimír Kořínek
Software Mentions: 1
Published: over 9 years ago

10.1038/tp.2016.224

Proteomic analysis of the postsynaptic density implicates synaptic function and energy pathways in bipolar disorder
Cited by: 48
Author(s): Melanie Föcking, Patrick Dicker, Lorna M. Lopez, Mafdalena Hryniewiecka, Kieran Wynne, James English, Gerard Cagney, David Cotter
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41398-020-01024-9

Integrated phosphoproteomic and metabolomic profiling reveals perturbed pathways in the hippocampus of gut microbiota dysbiosis mice
Cited by: 21
Author(s): Haiyang Wang, Lanxiang Liu, Xuechen Rao, Benhua Zeng, Ying Yu, Chanjuan Zhou, Li Zeng, Peng Zheng, Juncai Pu, Shaohua Xu, Ke Cheng, Hanping Zhang, Ping Ji, Hong Wei, Peng Xie
Software Mentions: 1
Published: almost 6 years ago

10.1167/tvst.9.11.16

Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment
Cited by: 7
Author(s): Ebbe Toftgaard Poulsen, Xhevat Lumi, Anders Kragh Hansen, Jan J. Enghild, Goran Petrovski
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01092-17

The Capacity of Mycobacterium tuberculosis To Survive Iron Starvation Might Enable It To Persist in Iron-Deprived Microenvironments of Human Granulomas
Cited by: 91
Author(s): Krishna Kurthkoti, Hamel Amin, Mohlopheni J. Marakalala, Saleena Ghanny, Selvakumar Subbian, Alexandra Sakatos, Jonathan Livny, Sarah M. Fortune, Michael Berney, G. Marcela Rodríguez
Software Mentions: 1
Published: about 9 years ago

10.1128/mBio.00959-18

Global Proteomic Changes Induced by the Epstein-Barr Virus Oncoproteins Latent Membrane Protein 1 and 2A
Cited by: 8
Author(s): Robert M. DeKroon, Harsha Gunawardena, Rachel Hood Edwards, Nancy Raab‐Traub
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00340-19

Stress-Induced MazF-Mediated Proteins in Escherichia coli
Cited by: 18
Author(s): Akanksha Nigam, Tamar Ziv, Adi Oron-Gottesman, Hanna Engelberg‐Kulka
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02825-18

Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation
Cited by: 30
Author(s): Laryssa Freitas Ribeiro, Cynthia Chelius, Karthik Boppidi, Nisha Naik, Simin Hossain, Jessica J. J. Ramsey, Jyothi Kumar, Lucas F. Ribeiro, Marc Ostermeier, Bao Tran, Young Ah Goo, Leandro José de Assis, Mevlüt Ulaş, Özgür Bayram, Gustavo H. Goldman, Stephen R. Lincoln, Ranjan Srivastava, Steven D. Harris, Mark R. Marten
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01138-19

Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase
Cited by: 25
Author(s): Stine Vang Nielsen, Kathryn Jane Turnbull, Mohammad Roghanian, René L. Bærentsen, Maja Šemanjski, D.E. Brodersen, Boris Maček, Kenn Gerdes
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01832-19

Clustering as a Means To Control Nitrate Respiration Efficiency and Toxicity in Escherichia coli
Cited by: 15
Author(s): Suzy Bulot, Stéphane Audebert, Lætitia Pieulle, Farida Seduk, Emilie Baudelet, Léon Espinosa, Marie-Camille Pizay, Luc Camoin, Axel Magalon
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00625-20

The WblC/WhiB7 Transcription Factor Controls Intrinsic Resistance to Translation-Targeting Antibiotics by Altering Ribosome Composition
Cited by: 18
Author(s): Ju Hyun Lee, Ji-Sun Yoo, Yeonbum Kim, Jong Seo Kim, Eun Jin Lee, Jung Hye Roe
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.00516-20

The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440
Cited by: 18
Author(s): Matthias Wehrmann, Maxime Toussaint, Jens Pfannstiel, Patrick Billard, Janosch Klebensberger
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01287-20

Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites
Cited by: 11
Author(s): Kunal R. More, Inderjeet Kaur, Quentin Giai Gianetto, Brandon M. Invergo, Thibault Chaze, Ravi Jain, Christèle Huon, Petra Gutenbrunner, Hendrik Weisser, Mariette Matondo, Jyoti S. Choudhary, Gordon Langsley, Shailja Singh, Chetan E. Chitnis
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00123-21

The DnaK Chaperone System Buffers the Fitness Cost of Antibiotic Resistance Mutations in Mycobacteria
Cited by: 11
Author(s): Allison Fay, John Philip, Priya Saha, Ronald C. Hendrickson, Michael S. Glickman, Kristin Burns-Huang
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03674-20

A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome
Cited by: 13
Author(s): Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben‐Asher, Eyal Shimoni, Ryan Simkovsky, Susan S. Golden, Andy LiWang, Rakefet Schwarz
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00519-21

Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile
Cited by: 9
Author(s): Tránsito García-García, Sandrine Poncet, Elodie Cuenot, Thibaut Douché, Quentin Giai Gianetto, Johann Peltier, Pascal Courtin, Marie‐Pierre Chapot‐Chartier, Mariette Matondo, Bruno Dupuy, Thomas Candela, Isabelle Martin‐Verstraete
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00365-20

Phosphoproteomics of Aspergillus fumigatus Exposed to the Antifungal Drug Caspofungin
Cited by: 7
Author(s): Eliciane Cevolani Mattos, Giuseppe Palmisano, Gustavo H. Goldman
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00134-21

A Small Regulatory RNA Generated from the malK 5′ Untranslated Region Targets Gluconeogenesis in Vibrio Species
Cited by: 3
Author(s): Xing Luo, Marick Esberard, Philippe Bouloc, Annick Jacq
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00327-21

Mitochondrial Contact Site and Cristae Organization System and F 1 F O -ATP Synthase Crosstalk Is a Fundamental Property of Mitochondrial Cristae
Cited by: 10
Author(s): Lawrence Rudy Cadena, Ondřej Gahura, Brian Panicucci, Alena Zı́ková, Hassan Hashimi
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00149-16

Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms
Cited by: 24
Author(s): Jeffrey A. Freiberg, Yoann Le Breton, Bao Tran, Alison Scott, Janette M. Harro, Robert K. Ernst, Young Ah Goo, Emmanuel F. Mongodin, David R. Goodlett, Kevin S. McIver, Mark E. Shirtliff
Software Mentions: 1
Published: almost 10 years ago

10.1128/mSystems.00240-18

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-DwellingBacteroidetes
Cited by: 27
Author(s): Marcel Taillefer, Magnus Ø. Arntzen, Bernard Henrissat, Phillip B. Pope, Johan Larsbrink
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00314-18

Salmonella Proteomic Profiling during Infection Distinguishes the Intracellular Environment of Host Cells
Cited by: 20
Author(s): Zezhou Li, Yanhua Liu, Jiaqi Fu, Buyu Zhang, Sen Cheng, Mei Wu, Zhen Wang, Jiezhang Jiang, Cheng Chang, Xiaoyun Liu
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.01129-20

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans
Cited by: 8
Author(s): Hailin Zheng, Nana Song, Xiaowei Zhou, Huan Mei, Dongmei Li, Xiaofang Li, Weida Liu
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00549-21

Proteome Dynamics during Antibiotic Persistence and Resuscitation
Cited by: 4
Author(s): Maja Šemanjski, Fabio Lino Gratani, Till Englert, Payal Nashier, Viktor Beke, Nicolas C. Nalpas, Elsa Germain, Shilpa Elizabeth George, Christiane Wolz, Kenn Gerdes, Boris Maček
Software Mentions: 1
Published: about 5 years ago

10.1007/s00439-021-02345-5

ASL expression in ALDH1A1+ neurons in the substantia nigra metabolically contributes to neurodegenerative phenotype
Cited by: 6
Author(s): Shaul Lerner, Raya Eilam, Lital N. Adler, Julien Baruteau, Topaz Kreiser, Michael Tsoory, Alexander Brandis, Tevie Mehlman, Mina Ryten, Juan A. Botía, Sonia García-Ruiz, Alejandro Cisterna Garcia, Carlo Dionisi‐Vici, Giusy Ranucci, Marco Spada, Ram Mazkereth, Robert McCarter, Rima Izem, Thomas J Balmat, Rachel L. Richesson, Ehud Gazit, Sandesh C.S. Nagamani, Ayelet Erez
Software Mentions: 1
Published: about 5 years ago

10.1186/s40246-014-0022-y

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis
Cited by: 16
Author(s): Konstantinos Sousounis, Rital B. Bhavsar, Mario Looso, Marcus Krüger, Jessica L. Beebe, Thomas Braun, Panagiotis A. Tsonis
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41396-020-00769-x

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Cited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: about 6 years ago

10.1038/s41396-018-0243-5

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
Cited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: about 8 years ago

10.1186/s13046-018-0737-z

Lipid accumulation in human breast cancer cells injured by iron depletors
Cited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-021-01879-w

Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancer
Cited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-02095-2

circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinoma
Cited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20200206

Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Cited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: over 6 years ago

10.1080/20013078.2018.1490145

Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatography
Cited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 8 years ago

10.1080/20013078.2019.1635420

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Cited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: about 7 years ago

10.1002/jev2.12109

Apoptotic vesicles restore liver macrophage homeostasis to counteract type 2 diabetes
Cited by: 70
Author(s): Chenxi Zheng, Bing‐Dong Sui, Xiao Zhang, Jiachen Hu, Ji Chen, Liu Jin, Di Wu, Qingyuan Ye, Lei Xiang, Xinyu Qiu, Siying Liu, Zhihong Deng, Jun Zhou, Shiyu Liu, Songtao Shi, Yan Jin
Software Mentions: 1
Published: over 5 years ago

10.1002/jev2.12129

Cryptococcus extracellular vesicles properties and their use as vaccine platforms
Cited by: 39
Author(s): Juliana Rizzo, Sarah Sze Wah Wong, Anastasia D. Gazi, Frédérique Moyrand, Thibault Chaze, Pierre‐Henri Commère, Sophie Novault, Mariette Matondo, Gérard Péhau‐Arnaudet, Flavia C G Reis, Matthijn Vos, Lysangela Ronalte Alves, Robin C. May, Leonardo Nimrichter, Márcio L. Rodrigues, Vishukumar Aimanianda, Guilhem Janbon
Software Mentions: 1
Published: about 5 years ago

10.3390/jof5010007

Proteomic Analysis of the Responses of Candida albicans during Infection of Galleria mellonella Larvae
Cited by: 16
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 7 years ago

10.3390/jof6020042

Exposure of Aspergillus fumigatus to Atorvastatin Leads to Altered Membrane Permeability and Induction of an Oxidative Stress Response
Cited by: 6
Author(s): Ahmad Ajdidi, Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7090748

ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis Manifestation
Cited by: 9
Author(s): Kevin Mok, Narissara Suratanon, Sittiruk Roytrakul, Sawanya Charoenlappanit, Preecha Patumcharoenpol, Pantipa Chatchatee, Wanwipa Vongsangnak, Massalin Nakphaichit
Software Mentions: 1
Published: about 5 years ago

10.1155/2015/678527

Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells
Cited by: 22
Author(s): Paula A. Bousquet, Joe Alexander Sandvik, Magnus Ø. Arntzen, Nina Frederike Jeppesen Edin, Stine Christoffersen, Ute Krengel, Erik O. Pettersen, Bernd Thiede
Software Mentions: 1
Published: about 11 years ago

10.1155/2015/841769

SILAC-Based Quantitative Proteomic Analysis of Diffuse Large B-Cell Lymphoma Patients
Cited by: 12
Author(s): Ulla Rüetschi, Martin Stenson, Sverker Hasselblom, Herman Nilsson‐Ehle, Ulrika Hansson, Henrik Fagman, Per‐Ola Andersson
Software Mentions: 1
Published: over 11 years ago

10.1167/iovs.17-22927

Generation and Proteome Profiling of PBMC-Originated, iPSC-Derived Corneal Endothelial Cells
Cited by: 23
Author(s): Muhammad Ali, Shahid Y. Khan, Shivakumar Vasanth, Mariya R Ahmed, Ruiqiang Chen, Chan Hyun Na, Jason J. Thomson, Caihong Qiu, John D. Gottsch, Saima Riazuddin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41388-019-0971-7

Microparticles from tumors exposed to radiation promote immune evasion in part by PD-L1
Cited by: 29
Author(s): Michael Timaner, Ruslana Kotsofruk, Ziv Raviv, Ksenia Magidey, Dvir Shechter, Tal Kan, A. Nevelsky, Shahar Daniel, Elisabeth G.E. de Vries, Tongwu Zhang, Orit Kaidar–Person, Robert S. Kerbel, Yuval Shaked
Software Mentions: 1
Published: about 7 years ago

Projects: cran: Andromeda

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Science Score: 85/100

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Papers Mentioning Andromeda 1,724