Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Andromeda

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda

Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 1 year ago
3 dependent packages
1,891 downloads last month

Papers Mentioning Andromeda 1,724

10.1038/s41598-017-11643-w
Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry
Cited by: 23
Author(s): Maaike Rijkers, Bart L. van den Eshof, Pieter F. van der Meer, Floris P.J. van Alphen, Dirk de Korte, Frank W.G. Leebeek, Alexander B. Meijer, Jan Voorberg, A.J. Gerard Jansen
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-12574-2
Knockout of the epilepsy gene Depdc5 in mice causes severe embryonic dysmorphology with hyperactivity of mTORC1 signalling
Cited by: 38
Author(s): James Hughes, Ruby Dawson, Melinda N Tea, Dale McAninch, Sandra Piltz, Dominique Jackson, Laura Stewart, Michael G. Ricos, Leanne M. Dibbens, Natasha L. Harvey, Paul Q. Thomas
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-13027-6
Annexin-enriched osteoblast-derived vesicles act as an extracellular site of mineral nucleation within developing stem cell cultures
Cited by: 47
Author(s): Owen G. Davies, Sophie C. Cox, Richard L. Williams, Dimitra Tsaroucha, Ronan M. Dorrepaal, Mark P. Lewis, Liam M. Grover
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-13092-x
Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics
Cited by: 37
Author(s): Takashi Shiromizu, Hideaki Kume, Mimiko Ishida, Jun Adachi, Masayuki Kano, Hisahiro Matsubara, Takeshi Tomonaga
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-14078-5
Crosstalk between proteins expression and lysine acetylation in response to patulin stress in Rhodotorula mucilaginosa
Cited by: 16
Author(s): Xizhong Zheng, Qiya Yang, Lina Zhao, Maurice Tibiru Apaliya, Xiaoyun Zhang, Hongyin Zhang
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-14285-0
Localised genetic heterogeneity provides a novel mode of evolution in dsDNA phages
Cited by: 5
Author(s): Damian Magill, Phillip A. Kucher, В. Н. Крылов, Е. А. Плетенева, John P. Quinn, Leonid Kulakov
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-14460-3
Modelling acrylamide acute neurotoxicity in zebrafish larvae
Cited by: 35
Author(s): Eva Prats, Cristian Gómez‐Canela, Shani Ben-Lulu, Tamar Ziv, Francesc Padrós, Daniel Tornero, Natàlia García-Reyero, Romà Tauler, Arie Admon, Demetrio Raldúa
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-14477-8
Involvement of the Vitamin D Receptor in Energy Metabolism Revealed by Profiling of Lysine Succinylome of White Adipose Tissue
Cited by: 7
Author(s): Sileny Han, Yan Lou, Yu Fu, Yalin Zhang, Ning Liu, Zuwang Liu, Yanyan Zhou, Juan Kong
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-15655-4
Large-scale identification of lysine acetylated proteins in vegetative hyphae of the rice blast fungus
Cited by: 11
Author(s): Xiaomei Sun, Zhigang Li, Huan Liu, Jun Yang, Wenxing Liang, You-Liang Peng, Jinguang Huang
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-15194-y
DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway
Cited by: 49
Author(s): Imke K. Mandemaker, Loes van Cuijk, Roel C. Janssens, Hannes Lans, Karel Bezstarosti, Jan H.J. Hoeijmakers, Jeroen Demmers, Wim Vermeulen, Jürgen A. Marteijn
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-15854-z
Proteome-wide identification of lysine 2-hydroxyisobutyrylation reveals conserved and novel histone modifications in Physcomitrella patens
Cited by: 32
Author(s): Zhiming Yu, Jun Ni, Wei Sheng, Zhikun Wang, Yuhuan Wu
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-15920-6
Urothelial cancer proteomics provides both prognostic and functional information
Cited by: 20
Author(s): Guillermo Velasco, Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, María Urbanowicz, G. Ruiz-Ares, Juan Manuel Sepúlveda, Guillermo Prado-Vázquez, Jorge M. Arevalillo, Andrea Zapater-Moros, Hilario Navarro, Rocío López-Vacas, Ray Manneh, Irene Otero, Felipe Villacampa, Jesús M. Paramio, Juan Ángel Fresno Vara, Daniel Castellano
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-12796-4
Disulfide loop cleavage of Legionella pneumophila PlaA boosts lysophospholipase A activity
Cited by: 10
Author(s): Christina Lang, Miriam Hiller, Antje Flieger
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-017-16695-6
Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system
Cited by: 16
Author(s): Andrea Hildebrandt, Gregorio Alanis-Lobato, Andrea Voigt, Kathi Zarnack, Miguel A. Andrade‐Navarro, Petra Beli, Julian König
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-017-16793-5
Elucidating the in vivo interactome of HIV-1 RNA by hybridization capture and mass spectrometry
Cited by: 34
Author(s): Rachel A. Knoener, Jordan T. Becker, Mark Scalf, Nathan M. Sherer, Lloyd M. Smith
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-19424-9
Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling
Cited by: 16
Author(s): Krzysztof Drabikowski, Jacqueline Ferralli, Michał Kistowski, Jacek Olędzki, Michał Dadlez, Ruth Chiquet‐Ehrismann
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-20130-9
Global ubiquitination analysis reveals extensive modification and proteasomal degradation of cowpox virus proteins, but preservation of viral cores
Cited by: 12
Author(s): Marica Grossegesse, Joerg Doellinger, Annemarie Fritsch, Michael Laue, Janett Piesker, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-23702-x
Quantifying extracellular matrix turnover in human lung scaffold cultures
Cited by: 44
Author(s): Oskar Rosmark, Emma Åhrman, Catharina Müller, Linda Elowsson Rendin, Leif Eriksson, Anders Malmström, Oskar Hällgren, Anna Karin Larsson‐Callerfelt, Gunilla Westergren‐Thorsson, Johan Malmström
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-24019-5
Characterization and non-parametric modeling of the developing serum proteome during infancy and early childhood
Cited by: 13
Author(s): Niina Lietzèn, Lu Cheng, Robert Moulder, Heli Siljander, Essi Laajala, Taina Härkönen, Aleksandr Peet, Aki Vehtari, Vallo Tillmann, Mikael Knip, Harri Lähdesmäki, Riitta Lahesmaa
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-24380-5
HadD, a novel fatty acid synthase type II protein, is essential for alpha- and epoxy-mycolic acid biosynthesis and mycobacterial fitness
Cited by: 15
Author(s): Cyril Lefebvre, Richard Boulon, Manuelle Ducoux, Sabine Gavalda, Françoise Laval, Stevie Jamet, Nathalie Eynard, Anne Lemassu, Kaymeuang Cam, Marie‐Pierre Bousquet, Fabienne Bardou, Odile Burlet‐Schiltz, Mamadou Daffé, Annaık̈ Quémard
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-25137-w
Nucleolar-nucleoplasmic shuttling of TARG1 and its control by DNA damage-induced poly-ADP-ribosylation and by nucleolar transcription
Cited by: 31
Author(s): Mareike Bütepage, Christian Preisinger, Alex von Kriegsheim, Anja Scheufen, Eva Lausberg, Jinyu Li, Ferdinand Kappes, Regina Feederle, Sabrina Ernst, Laura Eckei, Sarah Krieg, Gerhard Müller‐Newen, Giulia Rossetti, Karla L. H. Feijs, Patricia Verheugd, Bernhard Lüscher
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-25060-0
Proteomic differences between focal and diffuse traumatic brain injury in human brain tissue
Cited by: 32
Author(s): Sami Abu Hamdeh, Ganna Shevchenko, Jia Mi, Sravani Musunuri, Jonas Bergquist, Niklas Marklund
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-26282-y
Functional Proteomic Profiling of Secreted Serine Proteases in Health and Inflammatory Bowel Disease
Cited by: 57
Author(s): Alexandre Denadai‐Souza, Chrystelle Bonnart, Núria Solà Tapias, Marlène Marcellin, Brendan Gilmore, Laurent Alric, Delphine Bonnet, Odile Burlet‐Schiltz, Morley D. Hollenberg, Nathalie Vergnolle, Céline Deraison
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-26676-y
A qualitative proteome-wide lysine crotonylation profiling of papaya (Carica papaya L.)
Cited by: 42
Author(s): Kaidong Liu, Changchun Yuan, Haili Li, Chen Kunyan, Lishi Lu, Chenjia Shen, Xiaolin Zheng
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-26262-2
SILAC–based quantitative MS approach for real-time recording protein-mediated cell-cell interactions
Cited by: 18
Author(s): Xixi Wang, Yu He, Ye Yang, Xinyu Zhao, Shengfu Deng, Gu He, Hongxia Zhu, Nuo Xu, Shufang Liang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-27394-1
Alterations of mTOR signaling impact metabolic stress resistance in colorectal carcinomas with BRAF and KRAS mutations
Cited by: 21
Author(s): Raphaela Fritsche‐Guenther, Christin Zasada, Guido Mastrobuoni, Nadine Royla, Roman Josef Rainer, Florian Roßner, Matthias Pietzke, Edda Klipp, Christine Sers, Stefan Kempa
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-27265-9
Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis
Cited by: 19
Author(s): Santosh D. Bhosale, Robert Moulder, Mikko S Venäläinen, Juha Koskinen, Niina Pitkänen, Markus Juonala, Mika Kähönen, Terho Lehtimäki, Jorma Viikari, Laura L. Elo, David R. Goodlett, Riitta Lahesmaa, Olli T. Raitakari
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-28019-3
Cluster-assembled zirconia substrates promote long-term differentiation and functioning of human islets of Langerhans
Cited by: 25
Author(s): A. Galli, Elisa Maffioli, Elisa Sogne, S. Moretti, E.S. Di Cairano, Armando Negri, Simona Nonnis, Giuseppe Danilo Norata, Fabrizia Bonacina, Francesca Borghi, Alessandro Podestà, Federico Bertuzzi, Paolo Milani, Cristina Lenardi, Gioacchino Tedeschi, Carla Perego
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-29728-5
Deoxynivalenol induces structural alterations in epidermoid carcinoma cells A431 and impairs the response to biomechanical stimulation
Cited by: 14
Author(s): Giorgia Del Favero, Lydia Woelflingseder, Lukas Janker, Benjamin Neuditschko, Stefano Seriani, Paolo Gallina, Orfeo Sbaizero, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-29837-1
Improved phosphoproteomic analysis for phosphosignaling and active-kinome profiling in Matrigel-embedded spheroids and patient-derived organoids
Cited by: 17
Author(s): Yuichi Abe, Asa Tada, Junko Isoyama, Satoshi Nagayama, Ryoji Yao, Jun Adachi, Takeshi Tomonaga
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-30032-5
Proteomics Unravels the Regulatory Mechanisms in Human Tears Following Acute Renouncement of Contact Lens Use: A Comparison between Hard and Soft Lenses
Cited by: 22
Author(s): Caroline Manicam, Natarajan Perumal, Joanna Wasielica‐Poslednik, Yong Cajetan Ngongkole, Alexandra Tschäbunin, Marcel Sievers, Walter Lisch, Norbert Pfeiffer, Franz H. Grus, Adrian Gericke
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-29983-6
Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira
Cited by: 8
Author(s): Olivier Schiettekatte, Antony T. Vincent, Christian Malosse, Pierre Lechat, Julia Chamot‐Rooke, Frédéric J. Veyrier, Mathieu Picardeau, Pascale Bourhy
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-31556-6
The involvement of the low-oxygen-activated locus of Burkholderia cenocepacia in adaptation during cystic fibrosis infection
Cited by: 6
Author(s): Louise Cullen, Andrew O’Connor, Sarah McCormack, Rebecca A. Owens, Giles Holt, Cassandra Collins, Máire Callaghan, Seán Doyle, Darren Smith, Kirsten Schaffer, David A. Fitzpatrick, Siobhán McClean
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-32072-3
Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics
Cited by: 11
Author(s): Charles J Sande, Martin Mutunga, Jacqueline Muteti, James A. Berkley, D. James Nokes, James M. Njunge
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-32236-1
Differential Proteome Analysis of Human Neuroblastoma Xenograft Primary Tumors and Matched Spontaneous Distant Metastases
Cited by: 7
Author(s): Lorena Hänel, Tobias Gosau, Hanna Maar, Ursula Valentiner, Udo Schumacher, Kristoffer Riecken, Sabine Windhorst, Nils-Owe Hansen, Laura Heikaus, M. Wurlitzer, Ingo Nolte, Hartmut Schlüter, Tobias Lange
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-34791-z
Proteomics as a new tool to study fingermark ageing in forensics
Cited by: 36
Author(s): Stijn Oonk, Tom Schuurmans, Martin Pabst, Louis C. P. M. de Smet, Marcel de Puit
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-34955-x
Proteomics reveals ablation of PlGF increases antioxidant and neuroprotective proteins in the diabetic mouse retina
Cited by: 20
Author(s): Madhu Sudhana Saddala, Anton Lennikov, Dennis J. Grab, Guei‐Sheung Liu, Shibo Tang, Huang Hu
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-35589-9
In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins
Cited by: 19
Author(s): Vaishnavi Ravikumar, Nicolas C. Nalpas, Viktoria Anselm, Karsten Krug, Maša Lenuzzi, Martin Sebastijan Šestak, Tomislav Domazet-Lošo, Ivan Mijaković, Boris Maček
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-35034-x
Differences in plasma fibrin clot composition in patients with thrombotic antiphospholipid syndrome compared with venous thromboembolism
Cited by: 24
Author(s): Aneta Stachowicz, Michał Ząbczyk, Joanna Natorska, Maciej Suski, Rafał Olszanecki, Ryszard Korbut, Jacek R. Wiśniewski, Anetta Undas
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-37273-4
Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma
Cited by: 29
Author(s): Luc‐Matthieu Fornecker, Leslie Muller, Frédèric Bertrand, Nicodème Paul, Angélique Pichot, Raoul Herbrecht, Marie‐Pierre Chenard, Laurent Mauvieux, Laurent Vallat, Seiamak Bahram, Sarah Cianférani, Raphaël Carapito, Christine Carapito
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-38890-3
Phosphoproteomic analyses of kidneys of Atlantic salmon infected with Aeromonas salmonicida
Cited by: 6
Author(s): Pengfei Liu, Yishuai Du, Lingjie Meng, Xian Li, Dong Yang, Ying Liu
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-39438-1
Unique properties of PTEN-L contribute to neuroprotection in response to ischemic-like stress
Cited by: 11
Author(s): Magdalena C. E. Jochner, Jing An, Gisela Lättig-Tünnemann, Marieluise Kirchner, Alina Dagane, Gunnar Dittmar, Ulrich Dirnagl, Britta J. Eickholt, Christoph Harms
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-39331-x
Trimethylation of Elongation Factor-Tu by the Dual Thermoregulated Methyltransferase EftM Does Not Impact Its Canonical Function in Translation
Cited by: 5
Author(s): Samantha M. Prezioso, Duc M. Duong, Emily G. Kuiper, Qiudong Deng, Sebastián Albertí, Graeme L. Conn, Joanna B. Goldberg
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-018-36852-9
Succinyl-proteome profiling of Pyricularia oryzae, a devastating phytopathogenic fungus that causes rice blast disease
Cited by: 11
Author(s): Jiaoyu Wang, Ling Li, Rongyao Chai, Zhen Zhang, Haiping Qiu, Xueqin Mao, Zhongna Hao, Yanli Wang, Guochang Sun
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-41305-y
Pollens destroy respiratory epithelial cell anchors and drive alphaherpesvirus infection
Cited by: 21
Author(s): Jolien Van Cleemput, Katrien C. K. Poelaert, Kathlyn Laval, Francis Impens, Wim Van Den Broeck, Kris Gevaert, Hans Nauwynck
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-42441-1
A plasma membrane localized protein phosphatase in Toxoplasma gondii, PPM5C, regulates attachment to host cells
Cited by: 19
Author(s): Chunlin Yang, Malgorzata Broncel, Caia Dominicus, Emily Sampson, William J. Blakely, Moritz Treeck, Gustavo Arrizabalaga
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-43010-2
The interactome of a family of potential methyltransferases in HeLa cells
Cited by: 43
Author(s): Valentina Ignatova, Pascal W.T.C. Jansen, Marijke P Baltissen, Michiel Vermeulen, Robert Schneider
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48224-y
A universal approach to investigate circRNA protein coding function
Cited by: 32
Author(s): Dingding Mo, Xinping Li, Carsten A. Raabe, Di Cui, Jeanne-Franca Vollmar, Timofey S. Rozhdestvensky, Boris V. Skryabin, Juergen Brosius
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48774-1
Harnessing the tissue and plasma lncRNA-peptidome to discover peptide-based cancer biomarkers
Cited by: 14
Author(s): Sajib Chakraborty, Geoffroy Andrieux, Al Mehedi Hasan, Musaddeque Ahmed, Md. Ismail Hosen, Tania Rahman, Mohammad Amir Hossain, Melanie Boerries
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48972-x
Ionizing Radiation induction of cholesterol biosynthesis in Lung tissue
Cited by: 13
Author(s): Erica Werner, Andrew Alter, Qiudong Deng, Eric B. Dammer, Ya Wang, David S. Yu, Duc M. Duong, Nicholas T. Seyfried, Paul W. Doetsch
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-49597-w
Temporal analysis of vaginal proteome reveals developmental changes in lower reproductive tract of gilts across the first two weeks postnatal
Cited by: 4
Author(s): KaLynn Harlow, Aridany Suárez-Trujillo, Victoria Hedrick, Tiago J. P. Sobreira, Uma K. Aryal, Kara R Stewart, Theresa Casey
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-53493-8
A mass spectrometry guided approach for the identification of novel vaccine candidates in gram-negative pathogens
Cited by: 6
Author(s): Daniel Hornburg, Tobias Kruse, Florian Anderl, Christina Daschkin, Raphaela P. Semper, Kathrin Klar, Anna Guenther, Raquel Mejías-Luque, Nicole Schneiderhan‐Marra, Matthias Mann, Felix Meissner, Markus Gerhard
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54221-y
The landscape of tiered regulation of breast cancer cell metabolism
Cited by: 16
Author(s): Rotem Katzir, Ibrahim H. Polat, Michal Harel, Shir Katz, Carles Foguet, Vitaly A. Selivanov, Philippe Sabatier, Marta Cascante, Tamar Geiger, Eytan Ruppin
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-59342-3
Proteome-wide identification and functional analysis of ubiquitinated proteins in peach leaves
Cited by: 5
Author(s): Yanbo Song, Xiaojing Shi, Yanli Zou, Jian Guo, Nan Huo, Shuangjian Chen, Chen Zhao, Hong Li, Guoliang Wang, Yong Peng
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-60890-x
Proteomic identification of early urinary-biomarkers of acute kidney injury in preterm infants
Cited by: 19
Author(s): Young Hwa Jung, Dohyun Han, Seung Han Shin, Ee Kyung Kim, Han Suk Kim
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-62389-x
SPANX-A/D protein subfamily plays a key role in nuclear organisation, metabolism and flagellar motility of human spermatozoa
Cited by: 9
Author(s): Itziar Urizar-Arenaza, Nerea Osinalde, Vyacheslav Akimov, Michele Puglia, Iraia Muñoa-Hoyos, Marta Gianzo Citores, José Antonio Rodriguez, Teresa Ganzabal, Blagoy Blagoev, Irina Kratchmarova, Nerea Subirán
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-63318-8
C-reactive protein (CRP) recognizes uric acid crystals and recruits proteases C1 and MASP1
Cited by: 15
Author(s): Anika Alberts, Annika Klingberg, Anne Kathrin Wessig, Christèle Combes, Torsten Witte, Korbinian Brand, Andreas Pich, Konstantin Neumann
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-64534-y
Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study
Cited by: 9
Author(s): Debbie L. Cunningham, Adil R. Sarhan, Andrew J. Creese, Katherine P. B. Larkins, Hongyan Zhao, Harriet R. Ferguson, Katie Brookes, Anna A. Marusiak, Helen J. Cooper, John K. Heath
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67672-5
Cystathionine β-synthase deficiency: different changes in proteomes of thrombosis-resistant Cbs−/− mice and thrombosis-prone CBS−/− humans
Cited by: 8
Author(s): Marta Sikora, I Lewandowska, Łukasz Marczak, Ewa Bretes, Hieronim Jakubowski
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67505-5
Global analysis of protein degradation in prion infected cells
Cited by: 2
Author(s): Charles R. Hutti, Kevin Welle, Jennifer R. Hryhorenko, Sina Ghaemmaghami
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-70230-8
Proteome and lysine acetylome analysis reveals insights into the molecular mechanism of seed germination in wheat
Cited by: 13
Author(s): Weiwei Guo, Li Han, Ximei Li, Hong Wang, Mu Peng, Qingsong Lin, Qingchang Liu, Yumei Zhang
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-71634-2
Quantitative proteomic analysis of the tizoxanide effect in vero cells
Cited by: 5
Author(s): Kristie Aimi Yamamoto, Kevin Blackburn, Edimilson Migowski, Michael B. Goshe, Dennis T. Brown, Davis Fernandes Ferreira, Márcia Regina Soares
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-71712-5
High-resolution proteomics reveals differences in the proteome of spelt and bread wheat flour representing targets for research on wheat sensitivities
Cited by: 13
Author(s): Muhammad Afzal, Jens Pfannstiel, Julia Zimmermann, Stephan C. Bischoff, Tobias Würschum, C. Friedrich H. Longin
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-71491-z
Membrane disruption, but not metabolic rewiring, is the key mechanism of anticancer-action of FASN-inhibitors: a multi-omics analysis in ovarian cancer
Cited by: 11
Author(s): Thomas W. Grunt, Astrid Slany, Mariya Semkova, Ramón Colomer, María L. López‐Rodríguez, Michael Wuczkowski, Renate Wagner, Christopher Gerner, Gerald Stübiger
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-71950-7
Connectivity mapping of glomerular proteins identifies dimethylaminoparthenolide as a new inhibitor of diabetic kidney disease
Cited by: 13
Author(s): Julie Klein, Cécile Caubet, Mylène Camus, Manousos Makridakis, Colette Denis, Marion Gilet, Guylène Feuillet, Simon Rascalou, Eric Neau, Luc Garrigues, Olivier Thillaye du Boullay, Harald Mischak, Bernard Monsarrat, Odile Burlet‐Schiltz, Antonia Vlahou, Jean Sébastien Saulnier-Blache, Jean-Loup Bascands, Joost P. Schanstra
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-72391-y
Yeast Ppz1 protein phosphatase toxicity involves the alteration of multiple cellular targets
Cited by: 18
Author(s): Diego Velázquez, Marcel Albacar, Chunyi Zhang, Carlos Calafí, María López-Malo, Javier Torres‐Torronteras, Ramón Martí, Sergey I. Kovalchuk, Benoı̂t Pinson, Ole N. Jensen, Antonio Casamayor, Joaquı́n Ariño
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-78557-y
Comparative proteomic analysis of the sweetpotato provides insights into response mechanisms to Fusarium oxysporum f. sp. batatas
Cited by: 4
Author(s): Shu‐Fang Lin, Zhijian Yang, Bifang Huang, Chuyun Bi, Xiaofang Huang, GuoTai Chen, Nuerla Nijiati, XuanYang Chen
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-79049-9
DEAD-box RNA helicase protein DDX21 as a prognosis marker for early stage colorectal cancer with microsatellite instability
Cited by: 8
Author(s): Atsushi Tanaka, Julia Y. Wang, Jinru Shia, Yihua Zhou, Masakata Ogawa, Ronald C. Hendrickson, David S. Klimstra, Michael H. A. Roehrl
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-80120-8
In-depth blood proteome profiling analysis revealed distinct functional characteristics of plasma proteins between severe and non-severe COVID-19 patients
Cited by: 72
Author(s): Joonho Park, Hyeyoon Kim, So Yeon Kim, Yeonjae Kim, Hyukmin Lee, Kisoon Dan, Moon Woo Seong, Dohyun Han
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-79378-9
Octenidine-based hydrogel shows anti-inflammatory and protease-inhibitory capacities in wounded human skin
Cited by: 18
Author(s): Saskia Seiser, Lukas Janker, Nina Zila, Michael Mildner, Ana Rakita, Johannes Matiasek, Andrea Bileck, Christopher Gerner, Verena Paulitschke, Adelheid Elbe‐Bürger
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-79580-9
Molecular basis of the interaction of the human tyrosine phosphatase PTPN3 with the hepatitis B virus core protein
Cited by: 9
Author(s): Mariano Genera, Barbara Quioc-Salomon, Antonin Nourisson, Baptiste Colcombet-Cazenave, Ahmed Haouz, A.E. Mechaly, Mariette Matondo, Magalie Duchateau, Alexander König, Marc P. Windisch, Christine Neuveut, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-83169-1
The multifunctional role of SPANX-A/D protein subfamily in the promotion of pro-tumoural processes in human melanoma
Cited by: 2
Author(s): Itziar Urizar-Arenaza, Aitor Benedicto, Arantza Perez‐Valle, Nerea Osinalde, Vyacheslav Akimov, Iraia Muñoa-Hoyos, José Antonio Rodriguez, Aintzane Asumendi, María Dolores Boyano, Blagoy Blagoev, Irina Kratchmarova, Nerea Subirán
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-83666-3
Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells
Cited by: 8
Author(s): Kiall F. Suazo, Angela Jeong, Mina Ahmadi, Caroline Brown, Wenhui Qu, Ling Li, Mark D. Distefano
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-84385-5
An integrated transcriptomic and proteomic approach to identify the main Torymus sinensis venom components
Cited by: 15
Author(s): Carmen Scieuzo, Rosanna Salvia, Antonio Franco, Marco Pezzi, Flora Cozzolino, Milvia Chicca, Chiara Scapoli, Heiko Vogel, Maria Monti, Chiara Ferracini, Pietro Pucci, Alberto Alma, Patrizia Falabella
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85004-z
Protein network analyses of pulmonary endothelial cells in chronic thromboembolic pulmonary hypertension
Cited by: 8
Author(s): Sarath Babu Nukala, Olga Tura-Ceide, Giancarlo Aldini, Valérie F. E. D. Smolders, Isabel Blanco, Víctor I. Peinado, Manuel Castellà, Joan Albert Barberà, Alessandra Altomare, Giovanna Baron, Marina Carini, Marta Cascante, Alfonsina D’Amato
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85879-y
Global analysis of lysine 2-hydroxyisobutyrylation in wheat root
Cited by: 5
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Chunhua Gao, Li Geng, Kong Ling'an
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85988-8
Comparative proteomic profiling of newly acquired, virulent and attenuated Neoparamoeba perurans proteins associated with amoebic gill disease
Cited by: 3
Author(s): Kerrie Ní Dhufaigh, Eugene Dillon, Natasha A. Botwright, Anita Talbot, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-87003-6
Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer
Cited by: 5
Author(s): Alberto Valdés, Athanasios Bitzios, Eszter Kassa, Ganna Shevchenko, Alexander Falk, Per‐Uno Malmström, Anca Dragomir, Ulrika Segersten, Sara Bergström Lind
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-89597-3
The proteome of the human endolymphatic sac endolymph
Cited by: 4
Author(s): Christine Ölander, Jesper Edvardsson Rasmussen, Per Eriksson, Göran Laurell, Helge Rask‐Andersen, Jonas Bergquist
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-91664-8
Characterization of hyperglycemia due to sub-chronic administration of red ginseng extract via comparative global proteomic analysis
Cited by: 2
Author(s): Ann-Yae Na, Jung Jae Jo, Oh Kwang Kwon, Piljoung Cho, Yan Gao, Ju-Hyun Kim, Kyu Min Kim, Sung Hwan Ki, Sangkyu Lee
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-90149-y
Next generation proteomics with drug sensitivity screening identifies sub-clones informing therapeutic and drug development strategies for multiple myeloma patients
Cited by: 6
Author(s): Ciara Tierney, Despina Bazou, Muntasir Mamun Majumder, Pekka Anttila, Raija Silvennoinen, Caroline A. Heckman, Paul Dowling, Peter O’Gorman
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-92433-3
Identification of cis-acting determinants mediating the unconventional secretion of tau
Cited by: 11
Author(s): Taxiarchis Katsinelos, William A. McEwan, Thomas R. Jahn, Walter Nickel
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-95354-3
A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing
Cited by: 5
Author(s): Xin Liu, Ye Zhang, Lucas D. Ward, Qinghong Yan, Tanggis Bohnuud, Roberto Hernández, Socheata Lao, Jing Yuan, Fan Fan
Software Mentions: 1
Published: over 3 years ago
10.1100/2012/749281
Identification of Xylem Occlusions Occurring in Cut<i>Clematis</i>(<i>Clematis</i>L., fam.<i>Ranunculaceae</i>Juss.) Stems during Their Vase Life
Cited by: 12
Author(s): Agata Jędrzejuk, Julia Rochala, J. Zakrzewski, J. Rabiza-Świder
Software Mentions: 1
Published: almost 13 years ago
10.1080/21541248.2018.1564472
The CDC42 effector protein MRCKβ autophosphorylates on Threonine 1108
Cited by: 5
Author(s): Mathieu Unbekandt, Sérgio Lilla, Sara Zanivan, Michael F. Olson
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40064-015-1248-4
Use of ROV for assessing marine litter on the seafloor of Saronikos Gulf (Greece): a way to fill data gaps and deliver environmental education
Cited by: 26
Author(s): Christos Ioakeimidis, George Papatheodorou, Georgia Fermeli, N. Streftaris, E. Papathanassiou
Software Mentions: 1
Published: about 9 years ago
10.1186/s13287-019-1356-0
Human adipose liquid extract induces angiogenesis and adipogenesis: a novel cell-free therapeutic agent
Cited by: 29
Author(s): Yunfan He, Jing Xia, Hsinkai Chen, Liangyue Wang, Chao Deng, Feng Lu
Software Mentions: 1
Published: over 5 years ago
10.1186/s13287-020-01943-w
UBA2 activates Wnt/β-catenin signaling pathway during protection of R28 retinal precursor cells from hypoxia by extracellular vesicles derived from placental mesenchymal stem cells
Cited by: 11
Author(s): Kyungmin Koh, Soo‐Jin Park, Eun Soo Bae, Van-An Duong, Jong Park, Hookeun Lee, Helen Lew
Software Mentions: 1
Published: about 4 years ago
10.1186/s13287-020-02062-2
Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis
Cited by: 33
Author(s): Sebastian Wangler, Amir Kamali, Christina Wapp, Karin Wuertz‐Kozak, Sonja Häckel, Claudia Fortes, Lorin Michael Benneker, Lisbet Haglund, R. Geoff Richards, Mauro Alini, Marianna Peroglio, Sibylle Grad
Software Mentions: 1
Published: almost 4 years ago
10.1155/2013/245695
Proteomic Profiling of<i>Ex Vivo</i>Expanded CD34-Positive Haematopoetic Cells Derived from Umbilical Cord Blood
Cited by: 6
Author(s): Heiner Falkenberg, Teja Falk Radke, Gesine Kögler, Kai Stühler
Software Mentions: 1
Published: almost 12 years ago
10.1155/2016/2809192
Differential Proteomic Analysis of Human Placenta-Derived Mesenchymal Stem Cells Cultured on Normal Tissue Culture Surface and Hyaluronan-Coated Surface
Cited by: 6
Author(s): Tai‐Chee Wong, Ying Hui Chen, Szu Heng Liu, Mairim Alexandra Solís, Yu Chen, Cheng-Yen Chang, Lynn Ling-Huei Huang
Software Mentions: 1
Published: almost 9 years ago
10.1002/sctm.19-0405
Human bone marrow stem/stromal cell osteogenesis is regulated via mechanically activated osteocyte-derived extracellular vesicles
Cited by: 48
Author(s): Kian F. Eichholz, Ian Woods, Mathieu Riffault, Gillian P. Johnson, Michele A. Corrigan, Michelle C. Lowry, Nian Shen, Marie-Noëlle Labour, Kieran Wynne, Lorraine O’Driscoll, David A. Hoey
Software Mentions: 1
Published: over 4 years ago
10.7150/thno.38537
PTPN13 induces cell junction stabilization and inhibits mammary tumor invasiveness
Cited by: 10
Author(s): Mohamed Hamyeh, Florence Bernex, Romain M. Larive, Aurélien Naldi, Serge Urbach, Joëlle Simony-Lafontaine, Carole Puech, William Bakhache, Jérôme Solassol, Peter J. Coopman, Wiljan Hendriks, Gilles Freiss
Software Mentions: 1
Published: almost 5 years ago
10.7150/thno.46934
ATF6 aggravates acinar cell apoptosis and injury by regulating p53/AIFM2 transcription in Severe Acute Pancreatitis
Cited by: 35
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Xinggang Yang, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.38131
Elucidating the mitochondrial proteome of Toxoplasma gondii reveals the presence of a divergent cytochrome c oxidase
Cited by: 78
Author(s): Azadeh Seidi, Linden Muellner-Wong, Esther Rajendran, Edwin T Tjhin, Laura F. Dagley, Yi Tong Vincent Aw, Pierre Faou, Andrew I. Webb, Christopher J. Tonkin, Giel G. van Dooren
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.04534
Proteomic analysis of the response to cell cycle arrests in human myeloid leukemia cells
Cited by: 44
Author(s): Tony Ly, Akira Endo, Angus I. Lamond
Software Mentions: 1
Published: almost 10 years ago
10.7554/eLife.14530
Analysis of protein phosphorylation in nerve terminal reveals extensive changes in active zone proteins upon exocytosis
Cited by: 35
Author(s): Mahdokht Kohansal-Nodehi, John Jia En Chua, Henning Urlaub, Reinhard Jahn, Dominika Czernik
Software Mentions: 1
Published: over 8 years ago
10.7554/eLife.69424
In vivo analysis reveals that ATP-hydrolysis couples remodeling to SWI/SNF release from chromatin
Cited by: 9
Author(s): Ben C. Tilly, Gillian E. Chalkley, Jan A. van der Knaap, Yuri M. Moshkin, Tsung Wai Kan, Dick H. W. Dekkers, Jeroen Demmers, C. Peter Verrijzer
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.60970
Antipsychotic olanzapine-induced misfolding of proinsulin in the endoplasmic reticulum accounts for atypical development of diabetes
Cited by: 11
Author(s): Satoshi Ninagawa, Seiichiro Tada, Masaki Okumura, Kenta Inoguchi, Misaki Kinoshita, Shingo Kanemura, Koshi Imami, Hajime Umezawa, Tokiro Ishikawa, Robert B. Mackin, Seiji Torii, Yasushi Ishihama, Kenji Inaba, Takayuki Anazawa, Takahiko Nagamine, Kazutoshi Mori
Software Mentions: 1
Published: about 4 years ago
10.7554/eLife.60607
BipA exerts temperature-dependent translational control of biofilm-associated colony morphology in Vibrio cholerae
Cited by: 10
Author(s): Teresa del Peso Santos, Laura Álvarez, Brandon Sit, Oihane Irazoki, Jonathon Blake, Benjamin R. Warner, Alyson R. Warr, Anju Bala, Vladimı́r Beneš, Matthew K. Waldor, Kurt Fredrick, Felipe Cava
Software Mentions: 1
Published: almost 4 years ago