cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-79580-9

Molecular basis of the interaction of the human tyrosine phosphatase PTPN3 with the hepatitis B virus core protein
Cited by: 9
Author(s): Mariano Genera, Barbara Quioc-Salomon, Antonin Nourisson, Baptiste Colcombet-Cazenave, Ahmed Haouz, A.E. Mechaly, Mariette Matondo, Magalie Duchateau, Alexander König, Marc P. Windisch, Christine Neuveut, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83169-1

The multifunctional role of SPANX-A/D protein subfamily in the promotion of pro-tumoural processes in human melanoma
Cited by: 2
Author(s): Itziar Urizar-Arenaza, Aitor Benedicto, Arantza Perez‐Valle, Nerea Osinalde, Vyacheslav Akimov, Iraia Muñoa-Hoyos, José Antonio Rodriguez, Aintzane Asumendi, María Dolores Boyano, Blagoy Blagoev, Irina Kratchmarova, Nerea Subirán
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83666-3

Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells
Cited by: 8
Author(s): Kiall F. Suazo, Angela Jeong, Mina Ahmadi, Caroline Brown, Wenhui Qu, Ling Li, Mark D. Distefano
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84385-5

An integrated transcriptomic and proteomic approach to identify the main Torymus sinensis venom components
Cited by: 15
Author(s): Carmen Scieuzo, Rosanna Salvia, Antonio Franco, Marco Pezzi, Flora Cozzolino, Milvia Chicca, Chiara Scapoli, Heiko Vogel, Maria Monti, Chiara Ferracini, Pietro Pucci, Alberto Alma, Patrizia Falabella
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85004-z

Protein network analyses of pulmonary endothelial cells in chronic thromboembolic pulmonary hypertension
Cited by: 8
Author(s): Sarath Babu Nukala, Olga Tura-Ceide, Giancarlo Aldini, Valérie F. E. D. Smolders, Isabel Blanco, Víctor I. Peinado, Manuel Castellà, Joan Albert Barberà, Alessandra Altomare, Giovanna Baron, Marina Carini, Marta Cascante, Alfonsina D’Amato
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85879-y

Global analysis of lysine 2-hydroxyisobutyrylation in wheat root
Cited by: 5
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Chunhua Gao, Li Geng, Kong Ling'an
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85988-8

Comparative proteomic profiling of newly acquired, virulent and attenuated Neoparamoeba perurans proteins associated with amoebic gill disease
Cited by: 3
Author(s): Kerrie Ní Dhufaigh, Eugene Dillon, Natasha A. Botwright, Anita Talbot, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87003-6

Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer
Cited by: 5
Author(s): Alberto Valdés, Athanasios Bitzios, Eszter Kassa, Ganna Shevchenko, Alexander Falk, Per‐Uno Malmström, Anca Dragomir, Ulrika Segersten, Sara Bergström Lind
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89597-3

The proteome of the human endolymphatic sac endolymph
Cited by: 4
Author(s): Christine Ölander, Jesper Edvardsson Rasmussen, Per Eriksson, Göran Laurell, Helge Rask‐Andersen, Jonas Bergquist
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-91664-8

Characterization of hyperglycemia due to sub-chronic administration of red ginseng extract via comparative global proteomic analysis
Cited by: 2
Author(s): Ann-Yae Na, Jung Jae Jo, Oh Kwang Kwon, Piljoung Cho, Yan Gao, Ju-Hyun Kim, Kyu Min Kim, Sung Hwan Ki, Sangkyu Lee
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-90149-y

Next generation proteomics with drug sensitivity screening identifies sub-clones informing therapeutic and drug development strategies for multiple myeloma patients
Cited by: 6
Author(s): Ciara Tierney, Despina Bazou, Muntasir Mamun Majumder, Pekka Anttila, Raija Silvennoinen, Caroline A. Heckman, Paul Dowling, Peter O’Gorman
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-92433-3

Identification of cis-acting determinants mediating the unconventional secretion of tau
Cited by: 11
Author(s): Taxiarchis Katsinelos, William A. McEwan, Thomas R. Jahn, Walter Nickel
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-95354-3

A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing
Cited by: 5
Author(s): Xin Liu, Ye Zhang, Lucas D. Ward, Qinghong Yan, Tanggis Bohnuud, Roberto Hernández, Socheata Lao, Jing Yuan, Fan Fan
Software Mentions: 1
Published: about 5 years ago

10.1100/2012/749281

Identification of Xylem Occlusions Occurring in CutClematis(ClematisL., fam.RanunculaceaeJuss.) Stems during Their Vase Life
Cited by: 12
Author(s): Agata Jędrzejuk, Julia Rochala, J. Zakrzewski, J. Rabiza-Świder
Software Mentions: 1
Published: over 14 years ago

10.1080/21541248.2018.1564472

The CDC42 effector protein MRCKβ autophosphorylates on Threonine 1108
Cited by: 5
Author(s): Mathieu Unbekandt, Sérgio Lilla, Sara Zanivan, Michael F. Olson
Software Mentions: 1
Published: over 7 years ago

10.1186/s40064-015-1248-4

Use of ROV for assessing marine litter on the seafloor of Saronikos Gulf (Greece): a way to fill data gaps and deliver environmental education
Cited by: 26
Author(s): Christos Ioakeimidis, George Papatheodorou, Georgia Fermeli, N. Streftaris, E. Papathanassiou
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13287-019-1356-0

Human adipose liquid extract induces angiogenesis and adipogenesis: a novel cell-free therapeutic agent
Cited by: 29
Author(s): Yunfan He, Jing Xia, Hsinkai Chen, Liangyue Wang, Chao Deng, Feng Lu
Software Mentions: 1
Published: about 7 years ago

10.1186/s13287-020-01943-w

UBA2 activates Wnt/β-catenin signaling pathway during protection of R28 retinal precursor cells from hypoxia by extracellular vesicles derived from placental mesenchymal stem cells
Cited by: 11
Author(s): Kyungmin Koh, Soo‐Jin Park, Eun Soo Bae, Van-An Duong, Jong Park, Hookeun Lee, Helen Lew
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13287-020-02062-2

Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis
Cited by: 33
Author(s): Sebastian Wangler, Amir Kamali, Christina Wapp, Karin Wuertz‐Kozak, Sonja Häckel, Claudia Fortes, Lorin Michael Benneker, Lisbet Haglund, R. Geoff Richards, Mauro Alini, Marianna Peroglio, Sibylle Grad
Software Mentions: 1
Published: over 5 years ago

10.1155/2013/245695

Proteomic Profiling ofEx VivoExpanded CD34-Positive Haematopoetic Cells Derived from Umbilical Cord Blood
Cited by: 6
Author(s): Heiner Falkenberg, Teja Falk Radke, Gesine Kögler, Kai Stühler
Software Mentions: 1
Published: over 13 years ago

10.1155/2016/2809192

Differential Proteomic Analysis of Human Placenta-Derived Mesenchymal Stem Cells Cultured on Normal Tissue Culture Surface and Hyaluronan-Coated Surface
Cited by: 6
Author(s): Tai‐Chee Wong, Ying Hui Chen, Szu Heng Liu, Mairim Alexandra Solís, Yu Chen, Cheng-Yen Chang, Lynn Ling-Huei Huang
Software Mentions: 1
Published: over 10 years ago

10.1002/sctm.19-0405

Human bone marrow stem/stromal cell osteogenesis is regulated via mechanically activated osteocyte-derived extracellular vesicles
Cited by: 48
Author(s): Kian F. Eichholz, Ian Woods, Mathieu Riffault, Gillian P. Johnson, Michele A. Corrigan, Michelle C. Lowry, Nian Shen, Marie-Noëlle Labour, Kieran Wynne, Lorraine O’Driscoll, David A. Hoey
Software Mentions: 1
Published: about 6 years ago

10.7150/thno.38537

PTPN13 induces cell junction stabilization and inhibits mammary tumor invasiveness
Cited by: 10
Author(s): Mohamed Hamyeh, Florence Bernex, Romain M. Larive, Aurélien Naldi, Serge Urbach, Joëlle Simony-Lafontaine, Carole Puech, William Bakhache, Jérôme Solassol, Peter J. Coopman, Wiljan Hendriks, Gilles Freiss
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.46934

ATF6 aggravates acinar cell apoptosis and injury by regulating p53/AIFM2 transcription in Severe Acute Pancreatitis
Cited by: 35
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Xinggang Yang, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.38131

Elucidating the mitochondrial proteome of Toxoplasma gondii reveals the presence of a divergent cytochrome c oxidase
Cited by: 78
Author(s): Azadeh Seidi, Linden Muellner-Wong, Esther Rajendran, Edwin T Tjhin, Laura F. Dagley, Yi Tong Vincent Aw, Pierre Faou, Andrew I. Webb, Christopher J. Tonkin, Giel G. van Dooren
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.04534

Proteomic analysis of the response to cell cycle arrests in human myeloid leukemia cells
Cited by: 44
Author(s): Tony Ly, Akira Endo, Angus I. Lamond
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.14530

Analysis of protein phosphorylation in nerve terminal reveals extensive changes in active zone proteins upon exocytosis
Cited by: 35
Author(s): Mahdokht Kohansal-Nodehi, John Jia En Chua, Henning Urlaub, Reinhard Jahn, Dominika Czernik
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.69424

In vivo analysis reveals that ATP-hydrolysis couples remodeling to SWI/SNF release from chromatin
Cited by: 9
Author(s): Ben C. Tilly, Gillian E. Chalkley, Jan A. van der Knaap, Yuri M. Moshkin, Tsung Wai Kan, Dick H. W. Dekkers, Jeroen Demmers, C. Peter Verrijzer
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.60970

Antipsychotic olanzapine-induced misfolding of proinsulin in the endoplasmic reticulum accounts for atypical development of diabetes
Cited by: 11
Author(s): Satoshi Ninagawa, Seiichiro Tada, Masaki Okumura, Kenta Inoguchi, Misaki Kinoshita, Shingo Kanemura, Koshi Imami, Hajime Umezawa, Tokiro Ishikawa, Robert B. Mackin, Seiji Torii, Yasushi Ishihama, Kenji Inaba, Takayuki Anazawa, Takahiko Nagamine, Kazutoshi Mori
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.60607

BipA exerts temperature-dependent translational control of biofilm-associated colony morphology in Vibrio cholerae
Cited by: 10
Author(s): Teresa del Peso Santos, Laura Álvarez, Brandon Sit, Oihane Irazoki, Jonathon Blake, Benjamin R. Warner, Alyson R. Warr, Anju Bala, Vladimı́r Beneš, Matthew K. Waldor, Kurt Fredrick, Felipe Cava
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.33322

Time- and polarity-dependent proteomic changes associated with homeostatic scaling at central synapses
Cited by: 49
Author(s): Christoph T. Schanzenbächer, Julian D. Langer, Erin M. Schuman
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.18351

BRAF activates PAX3 to control muscle precursor cell migration during forelimb muscle development
Cited by: 15
Author(s): Jae-Young Shin, Shuichi Watanabe, Soraya Hoelper, Marcus Krüger, Sawa Kostin, Jochen Pöling, Thomas Kubin, Thomas Braun
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.52939

Proteome dynamics during homeostatic scaling in cultured neurons
Cited by: 69
Author(s): Aline Ricarda Dörrbaum, Beatriz Álvarez-Castelao, Belquis Nassim-Assir, Julian D. Langer
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms15046265

Evaluation of a Method for Nitrotyrosine Site Identification and Relative Quantitation Using a Stable Isotope-Labeled Nitrated Spike-In Standard and High Resolution Fourier Transform MS and MS/MS Analysis
Cited by: 12
Author(s): Kent W. Seeley, Alison R. Fertig, Craig Dufresne, Joao Paulo Costa Pinho, Stanley M. Stevens
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms150712007

Radiosensitization of Human Leukemic HL-60 Cells by ATR Kinase Inhibitor (VE-821): Phosphoproteomic Analysis
Cited by: 24
Author(s): Barbora Šalovská, Ivo Fabrik, Kamila Ďurišová, Marek Link, Jiřina Vávrová, Martina Řezáčová, Aleš Tichý
Software Mentions: 1
Published: about 12 years ago

10.3390/ijms17050631

Label-Free Quantitative Proteomics Reveals Differences in Molecular Mechanism of Atherosclerosis Related and Non-Related to Chronic Kidney Disease
Cited by: 21
Author(s): Magdalena Łuczak, Joanna Suszyńska-Zajczyk, Łukasz Marczak, Dorota Formanowicz, Elżbieta Pawliczak, Maria Wanic-Kossowska, Maciej Stobiecki
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms17050659

Comprehensive Identification of Immunodominant Proteins of Brucella abortus and Brucella melitensis Using Antibodies in the Sera from Naturally Infected Hosts
Cited by: 20
Author(s): Gamal Wareth, Murat Eravci, Christoph Weise, Uwe Roesler, Falk Melzer, Lisa D. Sprague, Heinrich Neubauer, Jayaseelan Murugaiyan
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms18010059

Label-Free Quantitative Proteomic Analysis of Harmless and Pathogenic Strains of Infectious Microalgae, Prototheca spp.
Cited by: 12
Author(s): Jayaseelan Murugaiyan, Murat Eravci, Christoph Weise, Uwe Roesler
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms18081763

Re-adaption on Earth after Spaceflights Affects the Mouse Liver Proteome
Cited by: 22
Author(s): Viktoria Anselm, Svetlana E. Novikova, Victor G. Zgoda
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18091811

iTRAQ-Based Quantitative Proteomics Analysis on Rice Anther Responding to High Temperature
Cited by: 32
Author(s): Qilin Mu, Wenying Zhang, Yunbo Zhang, Haoliang Yan, Ke Liu, Tsutomu Matsui, Xiaohong Tian, Pingfang Yang
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms19010078

Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis
Cited by: 27
Author(s): Shaimaa Abdelmegid, Jayaseelan Murugaiyan, Mohamed Abo-Ismail, Jeff Caswell, D.F. Kelton, Gordon M. Kirby
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19092679

Multiple Aspects of PIP2 Involvement in C. elegans Gametogenesis
Cited by: 1
Author(s): Lívia Uličná, Jana Rohožková, Pavel Hozák
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19092546

Impact of Spaceflight and Artificial Gravity on the Mouse Retina: Biochemical and Proteomic Analysis
Cited by: 35
Author(s): Xiao Wen Mao, Stephanie D. Byrum, Nina C. Nishiyama, Michael J. Pecaut, Vijayalakshmi Sridharan, Marjan Boerma, Alan J. Tackett, Dai Shiba, Masaki Shimizu, Satoru Takahashi, Michael D. Delp
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19102861

The Role of Tumor Microenvironment in Chemoresistance: 3D Extracellular Matrices as Accomplices
Cited by: 94
Author(s): Dimakatso Alice Senthebane, Tina Jonker, Arielle Rowe, Nicholas Ekow Thomford, Daniella Munro, Collet Dandara, Ambroise Wonkam, Dhirendra Govender, Bridget Calder, Nelson C. Soares, Jonathan M. Blackburn, M. Iqbal Parker, Kevin Dzobo
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19124065

Induced Resistance Mechanism of Novel Curcumin Analogs Bearing a Quinazoline Moiety to Plant Virus
Cited by: 10
Author(s): Limin Yin, Xiuhai Gan, Jing Shi, Ningning Zan, Awei Zhang, Xiaohu Ren, Miao Li, Dandan Xie, Deyu Hu, Baoan Song
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20040814

New Insights on Arabidopsis thaliana Root Adaption to Ammonium Nutrition by the Use of a Quantitative Proteomic Approach
Cited by: 19
Author(s): Inmaculada Coleto, Izargi Vega‐Mas, Gaëtan Glauser, María Begoña González‐Moro, Daniel Marino, Idoia Ariz
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20051241

Proteome and Phosphoproteome Analysis in TNF Long Term-Exposed Primary Human Monocytes
Cited by: 8
Author(s): Bastian Welz, Rolf Bikker, Johannes Junemann, Martin Christmann, Konstantin Neumann, Mareike Weber, Leonie Hoffmeister, Katharina Preuß, Andreas Pich, René Huber, Korbinian Brand
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20081895

Quantitative Phosphoproteomic and Physiological Analyses Provide Insights into the Formation of the Variegated Leaf in Catalpa fargesii
Cited by: 8
Author(s): Nan Wang, Tianqing Zhu, Nan Lu, Zhi Wang, Guijuan Yang, Guanzheng Qu, Lisheng Kong, Shougong Zhang, Wenjun Ma, Junhui Wang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20123096

Serum Proteome Alterations in Human Cystathionine β-Synthase Deficiency and Ischemic Stroke Subtypes
Cited by: 10
Author(s): Marta Sikora, I Lewandowska, Małgorzata Kupc, Jolanta Kubalska, Ałła Graban, Łukasz Marczak, Radosław Kaźmierski, Hieronim Jakubowski
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20143528

Comparative Transcriptomic and Proteomic Analysis to Deeply Investigate the Role of Hydrogen Cyanamide in Grape Bud Dormancy
Cited by: 14
Author(s): Muhammad Khalil-Ur-Rehman, Wei Wu, Yang Dong, Muhammad Faheem, Yanshuai Xu, Zhihong Gao, Zhen Guo Shen, Jianmin Tao
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20163893

Secretomics to Discover Regulators in Diseases
Cited by: 31
Author(s): Parkyong Song, Yonghoon Kwon, Jae‐Yeol Joo, Do-Geun Kim, Jong Hyuk Yoon
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20164029

Multi-Omics Approach for Studying Tears in Treatment-Naïve Glaucoma Patients
Cited by: 45
Author(s): Cláudia Rossi, Ilaria Cicalini, Maria Concetta Cufaro, Luca Agnifili, Leonardo Mastropasqua, Paola Lanuti, Marco Marchisio, Vincenzo De Laurenzi, Piero Del Boccio, Damiana Pieragostino
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20174135

Identification of Msp1-Induced Signaling Components in Rice Leaves by Integrated Proteomic and Phosphoproteomic Analysis
Cited by: 26
Author(s): Ravi Gupta, Cheol Woo Min, Yujin Kim, Sun Tae Kim
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20194843

Human Cysteine Cathepsins Degrade Immunoglobulin G In Vitro in a Predictable Manner
Cited by: 7
Author(s): Rune Alexander Høglund, Silje Bøen Torsetnes, Andreas Lossius, Bjarne Bogen, E. Jane Homan, Robert D. Bremel, Trygve Holmøy
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20215517

Proteomic Analysis of Urinary Extracellular Vesicles Reveals a Role for the Complement System in Medullary Sponge Kidney Disease
Cited by: 13
Author(s): Maurizio Bruschi, Simona Granata, Giovanni Candiano, Antonia Fabris, Andrea Petretto, Gian Marco Ghiggeri, Giovanni Gambaro, Gianluigi Zaza
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246118

Increased Expression of Immature Mannose-Containing Glycoproteins and Sialic Acid in Aged Mouse Brains
Cited by: 8
Author(s): Frieder Simon, Kaya Bork, Vinayaga S. Gnanapragassam, Tim Baldensperger, Marcus A. Glomb, Simone Di Sanzo, Alessandro Ori, Rüdiger Horstkorte
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21010032

Proteomic Analysis of Quercetin-Treated K562 Cells
Cited by: 6
Author(s): Fabrizia Brisdelli, Laura Di Francesco, Alessandra Giorgi, Anna Rita Lizzi, Carla Luzi, Giuseppina Mignogna, Argante Bozzi, Maria Eugenia Schininà
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21030929

Discovery of a Gatekeeper Residue in the C-Terminal Tail of the Extracellular Signal-Regulated Protein Kinase 5 (ERK5)
Cited by: 9
Author(s): Adam J. Pearson, Paul Fullwood, Gabriela Toro-Tapia, Ian Prise, Michael P. Smith, Qiuping Xu, Allan M. Jordan, Emanuele Giurisato, Alan J. Whitmarsh, Chiara Francavilla, Cathy Tournier
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21041200

Comparative Proteomics Profiling Illuminates the Fruitlet Abscission Mechanism of Sweet Cherry as Induced by Embryo Abortion
Cited by: 12
Author(s): Zhilang Qiu, Wen Zhuang, Kun Yang, Tian Tian, Guo Qiao, Yi Hong, Xiaopeng Wen
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21062185

Proteomic Profiles and Biological Processes of Relapsed vs. Non-Relapsed Pediatric Hodgkin Lymphoma
Cited by: 6
Author(s): Ombretta Repetto, Vallì De Re, Lara Mussolin, Massimo Tedeschi, Caterina Elia, Maurizio Bianchi, Salvatore Buffardi, Alessandra Sala, Roberta Burnelli, Maurizio Mascarin
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21093083

In Vitro Salivary Protein Adsorption Profile on Titanium and Ceramic Surfaces and the Corresponding Putative Immunological Implications
Cited by: 8
Author(s): Chenxuan Wei, Michael F. Burrow, MG Botelho, Henry Lam, W. Keung Leung
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21103468

EDEM1 Drives Misfolded Protein Degradation via ERAD and Exploits ER-Phagy as Back-Up Mechanism When ERAD Is Impaired
Cited by: 17
Author(s): Marioara Chirițoiu, Gabriela Chirițoiu, Cristian V. A. Munteanu, Florin Pastrama, N. Erwin Ivessa, Ștefana M. Petrescu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21124461

Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature
Cited by: 12
Author(s): Aaron J. Ogden, Jishnu Bhatt, Heather M. Brewer, Jack Kintigh, Kariuki Samwel Muiruri, Sairam Rudrabhatla, Joshua N. Adkins, Wayne R. Curtis
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21144998

Proteomics Reveals that Methylmalonyl-CoA Mutase Modulates Cell Architecture and Increases Susceptibility to Stress
Cited by: 35
Author(s): Michele Costanzo, Marianna Caterino, Armando Cevenini, Vincent Jung, Cérina Chhuon, Joanna Lipecka, Roberta Fedele, Ida Chiara Guerrera, Margherita Ruoppolo
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21155234

(Phospho)proteomic Profiling of Microsatellite Unstable CRC Cells Reveals Alterations in Nuclear Signaling and Cholesterol Metabolism Caused by Frameshift Mutation of NMD Regulator UPF3A
Cited by: 4
Author(s): Malwina Michalak, Eva-Maria Katzenmaier, Nina Roeckel, Stefan M. Woerner, Vera Fuchs, Uwe Warnken, Yan P. Yuan, Peer Bork, Gabriele Neu‐Yilik, Andreas E. Kulozik, Magnus von Knebel Doeberitz, Matthias Kloor, Jürgen Kopitz, Johannes Gebert
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21165841

Evidence for Enhanced Exosome Production in Aromatase Inhibitor-Resistant Breast Cancer Cells
Cited by: 21
Author(s): Giuseppina Augimeri, Giusi La Camera, Luca Gelsomino, Cinzia Giordano, Salvatore Panza, Diego Sisci, Catia Morelli, Balázs Győrffy, Daniela Bonofiglio, Sebastiano Andò, Ines Barone, Stefania Catalano
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186625

Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease
Cited by: 5
Author(s): Sébastien A. Gauthier, Iwona Pranke, Vincent Jung, Loredana Martignetti, Véronique Stoven, Thao Nguyen‐Khoa, Michaela Semeraro, Alexandre Hinzpeter, Aleksander Edelman, Chiara Guerrera, Isabelle Sermet‐Gaudelus
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21186601

Proteomic Approach for Searching for Universal, Tissue-Specific, and Line-Specific Markers of Extracellular Vesicles in Lung and Colorectal Adenocarcinoma Cell Lines
Cited by: 8
Author(s): Svetlana E. Novikova, N. A. Shushkova, T. E. Farafonova, Olga V. Tikhonova, Roman Kamyshinsky, Victor G. Zgoda
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21197330

Label-Free Mass Spectrometry-Based Quantification of Linker Histone H1 Variants in Clinical Samples
Cited by: 7
Author(s): Roberta Noberini, Cristina Morales Torres, Evelyn Oliva Savoia, Stefania Brandini, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Giuseppe R. Diaferia, Paola Scaffidi, Tiziana Bonaldi
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21207769

A Screen for PKN3 Substrates Reveals an Activating Phosphorylation of ARHGAP18
Cited by: 2
Author(s): Michal Dibus, Jan Brábek, Daniel Rösel
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218121

A Global Proteomic Approach Sheds New Light on Potential Iron-Sulfur Client Proteins of the Chloroplastic Maturation Factor NFU3
Cited by: 4
Author(s): Nathalie Berger, Florence Vignols, Brigitte Touraine, Maël Taupin-Broggini, Valérie Rofidal, Vincent Demolombe, Véronique Santoni, Nicolas Rouhier, Frédéric Gaymard, Christian Dubos
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22010462

The Thyroid Hormone Transporter Mct8 Restricts Cathepsin-Mediated Thyroglobulin Processing in Male Mice through Thyroid Auto-Regulatory Mechanisms That Encompass Autophagy
Cited by: 5
Author(s): Vaishnavi Venugopalan, Alaa Al-Hashimi, Maren Rehders, Janine Golchert, Vivien Reinecke, Georg Homuth, Uwe Völker, Mythili Manirajah, Alae Touzani, Jonas Weber, Matthew Bogyo, François Verrey, Eva K. Wirth, Ulrich Schweizer, Heike Heuer, Janine Kirstein, Klaudia Brix
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22041747

Label-Free Quantitative Phosphoproteomics of the Fission Yeast Schizosaccharomyces pombe Using Strong Anion Exchange- and Porous Graphitic Carbon-Based Fractionation Strategies
Cited by: 5
Author(s): Barbara Siváková, Jan Jurcik, Veronika Lukáčová, Tomas Selicky, Ingrid Čipáková, Péter Baráth, Luboš Čipák
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22041766

Detailed Structure and Pathophysiological Roles of the IgA-Albumin Complex in Multiple Myeloma
Cited by: 1
Author(s): Yuki Kawata, Hisashi Hirano, Ren Takahashi, Yukari Miyano, Ayuko Kimura, Noriyosi Sato, Yukio Morita, Hirokazu Kimura, Kiyotaka Fujita
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22062850

Muscle Proteomic Profile before and after Enzyme Replacement Therapy in Late-Onset Pompe Disease
Cited by: 9
Author(s): Manuela Moriggi, Daniele Capitanio, Enrica Torretta, Pietro Barbacini, Cinzia Bragato, Patrizia Sartori, Maurizio Moggio, Lorenzo Maggi, Marina Mora, Cecilia Gelfi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22063227

Phosphoproteomic Analysis of Subcutaneous and Omental Adipose Tissue Reveals Increased Lipid Turnover in Dairy Cows Supplemented with Conjugated Linoleic Acid
Cited by: 6
Author(s): Jayasimha Rayalu Daddam, H.M. Hammon, A. Tröscher, Laura A. Vogel, M. Gnott, Gitit Kra, Yishai Levin, H. Sauerwein, Maya Zachut
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22094851

A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes
Cited by: 5
Author(s): Juanma Ramírez, Gorka Prieto, Anne Olazabal‐Herrero, Eva Borràs, Elvira Fernández-Vigo, Unai Alduntzin, Nerea Osinalde, Javier Beaskoetxea, Benoît Lectez, Kerman Aloria, José Antonio Rodriguez, Alberto Paradela, Eduard Sabidó, Javier Muñoz, Fernando J. Corrales, Jesús M. Arizmendi, Ugo Mayor
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22094680

Skeletal Muscle Proteomic Profile Revealed Gender-Related Metabolic Responses in a Diet-Induced Obesity Animal Model
Cited by: 11
Author(s): Manuela Moriggi, Sara Belloli, Pietro Barbacini, Valentina Murtaj, Enrica Torretta, Linda Chaabane, Tamara Canu, Silvia Penati, Maria Luisa Malosio, Antonio Esposito, Cecilia Gelfi, Rosa María Moresco, Daniele Capitanio
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115815

Connexin 43 and Connexin 26 Involvement in the Ponatinib-Induced Cardiomyopathy: Sex-Related Differences in a Murine Model
Cited by: 11
Author(s): Rosalinda Madonna, Stefania Moscato, Enza Polizzi, Damiana Pieragostino, Maria Concetta Cufaro, Piero Del Boccio, Francesco Bianchi, Raffaele De Caterina, Letizia Mattii
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22126464

Early Changes in Crayfish Hemocyte Proteins after Injection with a β-1,3-glucan, Compared to Saline Injected and Naive Animals
Cited by: 6
Author(s): Charlotta Ekblom, Kenneth Söderhäll, Irene Söderhäll
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22136750

Changes in the Cell Wall Proteome of Leaves in Response to High Temperature Stress in Brachypodium distachyon
Cited by: 8
Author(s): Artur Piński, Alexander Betekhtin, Bożena Skupień-Rabian, Urszula Jankowska, Élisabeth Jamet, Robert Hasterok
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22137011

Identification of Nrl1 Domains Responsible for Interactions with RNA-Processing Factors and Regulation of Nrl1 Function by Phosphorylation
Cited by: 4
Author(s): Barbora Mikolaskova, Matus Jurcik, Ingrid Čipáková, Tomas Selicky, Jan Jurcik, Silvia Poláková, Erika Stupenova, Andrej Dudáš, Barbara Siváková, Jana Bellová, Péter Baráth, Lucia Aronica, Juraj Gregáň, Luboš Čipák
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22136925

Oral Pathogenic Bacteria-Inducing Neurodegenerative Microgliosis in Human Neural Cell Platform
Cited by: 11
Author(s): Van Thi Ai Tran, Yeon June Kang, Hyun-Kyoung Kim, Hyung‐Ryong Kim, Hansang Cho
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158246

Comparison of Silks from Pseudoips prasinana and Bombyx mori Shows Molecular Convergence in Fibroin Heavy Chains but Large Differences in Other Silk Components
Cited by: 5
Author(s): Michal Rindoš, Lucie Kučerová, Lenka Rouhová, Hana Sehadová, Michal Šerý, Miluše Hradilová, Peter Koník, Michal Žurovec
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158034

Novel Insight in Idiopathic Normal Pressure Hydrocephalus (iNPH) Biomarker Discovery in CSF
Cited by: 9
Author(s): Enrica Torretta, Beatrice Arosio, Pietro Barbacini, Daniele Capitanio, Paolo Rossi, Manuela Moriggi, Mario Clerici, Daniela Mari, Matteo Cesari, Cecilia Gelfi
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179370

Auxin Metabolome Profiling in the Arabidopsis Endoplasmic Reticulum Using an Optimised Organelle Isolation Protocol
Cited by: 4
Author(s): Ludmila Včelařová, Vladimír Skalický, Ivo Chamrád, René Lenobel, Martin Kubeš, Aleš Pěnčík, Ondřej Novák
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22179354

Design and Characterization of a Cell-Penetrating Peptide Derived from the SOX2 Transcription Factor
Cited by: 3
Author(s): Neha S. Gandhi, Edina Wang, Anabel Sorolla, Yu Kan, Adil Malik, Jyotsna Batra, Kimberly A. Young, Wan Jun Tie, Pilar Blancafort, Ricardo L. Mancera
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms22179642

Tissue-Specific Proteome and Subcellular Microscopic Analyses Reveal the Effect of High Salt Concentration on Actin Cytoskeleton and Vacuolization in Aleurone Cells during Early Germination of Barley
Cited by: 7
Author(s): Georgi Dermendjiev, Madeleine Schnurer, Jakob Weiszmann, Sarah Wilfinger, Emanuel Ott, Claudia Gebert, Wolfram Weckwerth, Verena Ibl
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms221810083

Burn Injury Induces Proinflammatory Plasma Extracellular Vesicles That Associate with Length of Hospital Stay in Women: CRP and SAA1 as Potential Prognostic Indicators
Cited by: 9
Author(s): Robert Maile, Micah L Willis, Laura E. Herring, Alex W. Prevatte, Cressida Mahung, Bruce A. Cairns, Shannon M. Wallet, Leon G. Coleman
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12951-019-0551-6

Isolation of microglia-derived extracellular vesicles: towards miRNA signatures and neuroprotection
Cited by: 33
Author(s): Quentin Lemaire, Antonella Raffo-Romero, Tanina Arab, Christelle Van Camp, Francesco Drago, Stefano Forte, Jean-Pascal Gimeno, Séverine Bégard, Morvane Colin, Jacopo Vizioli, Pierre-Éric Sautière, Michel Salzet, Christophe Lefebvre
Software Mentions: 1
Published: over 6 years ago

10.1186/s12951-016-0171-3

Conversion of nanoscale topographical information of cluster-assembled zirconia surfaces into mechanotransductive events promotes neuronal differentiation
Cited by: 52
Author(s): Carsten Schulte, Simona Rodighiero, Martino Alfredo Cappelluti, Luca Puricelli, Elisa Maffioli, Francesca Borghi, Armando Negri, Elisa Sogne, Massimiliano Galluzzi, Claudio Piazzoni, Margherita Tamplenizza, Alessandro Podestà, Gioacchino Tedeschi, Cristina Lenardi, P. Milani
Software Mentions: 1
Published: over 10 years ago

10.1186/s12974-020-02012-y

Minocycline reduces inflammatory response and cell death in a S100B retina degeneration model
Cited by: 29
Author(s): Pia Grotegut, Natarajan Perumal, Sandra Kuehn, Andreas Smit, H. Burkhard Dick, Franz H. Grus, Stephanie C. Joachim
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/1639854

Extracellular Vesicles and Their Potential Use in Monitoring Cancer Progression and Therapy: The Contribution of Proteomics
Cited by: 61
Author(s): Maria Concetta Cufaro, Damiana Pieragostino, Paola Lanuti, Cláudia Rossi, Ilaria Cicalini, L. Federici, Vincenzo De Laurenzi, Piero Del Boccio
Software Mentions: 1
Published: about 7 years ago

10.1186/s13048-020-0609-y

Proteomic and lipidomic analysis of exosomes derived from ovarian cancer cells and ovarian surface epithelial cells
Cited by: 49
Author(s): Lin Cheng, Kun Zhang, Yun’an Qing, Li Dong, Manhua Cui, Peng Jin, Tianmin Xu
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.6521

Annexin-A1 and caldesmon are associated with resistance to tamoxifen in estrogen receptor positive recurrent breast cancer
Cited by: 19
Author(s): Tommaso De Marchi, Anne Timmermans, Marcel Smid, Maxime P. Look, Christoph Stingl, Mark Opdam, Sabine C. Linn, Fred C.G.J. Sweep, Paul N. Span, Mike Kliffen, Carolien H.M. van Deurzen, Theo M. Luider, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.7573

Oncogenic epithelial cell-derived exosomes containing Rac1 and PAK2 induce angiogenesis in recipient endothelial cells
Cited by: 53
Author(s): Shashi K. Gopal, David W. Greening, Eric Hanssen, Hong Zhu, Richard J. Simpson, Rommel A. Mathias
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9729

Characterization and use of HapT1-derived homologous tumors as a preclinical model to evaluate therapeutic efficacy of drugs against pancreatic tumor desmoplasia
Cited by: 24
Author(s): Sujit Suklabaidya, Biswajit Das, Syed Azmal Ali, Sumeet Jain, Sharada Swaminathan, Ashok Kumar Mohanty, Sasmita Panda, Pujarini Dash, Subhankar Chakraborty, Surinder K. Batra, Shantibhusan Senapati
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.9837

TMPRSS2-ERG fusion protein regulates insulin-like growth factor-1 receptor (IGF1R) gene expression in prostate cancer: involvement of transcription factor Sp1
Cited by: 19
Author(s): Shilhav Meisel Sharon, Yair Pozniak, Tamar Geiger, Haim Werner
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.10840

Crosstalk among the proteome, lysine phosphorylation, and acetylation in romidepsin-treated colon cancer cells
Cited by: 7
Author(s): Tianyun Wang, Yurong Chai, Yanjie Jia, Gao J, Xiaojun Peng, Hua-Feng Han
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.11794

Cytoskeleton-centric protein transportation by exosomes transforms tumor-favorable macrophages
Cited by: 55
Author(s): Zhipeng Chen, Lijuan Yang, Yizhi Cui, Yanlong Zhou, Xinhua Yin, Jiahui Guo, Gong Zhang, Tong Wang, Qing‐Yu He
Software Mentions: 1
Published: almost 10 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724