cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1074/mcp.M116.061267

Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells
Cited by: 5
Author(s): Jenny Worthington, Georgia Spain, John F. Timms
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.RA120.002164

Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing
Cited by: 74
Author(s): Jana Zecha, Chien-Yun Lee, Florian Bayer, Chen Meng, Vincent Grass, Johannes Zerweck, Karsten Schnatbaum, Thomas Michler, Andreas Pichlmair, Christina Ludwig, Bernhard Küster
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2019.01.027

Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex
Cited by: 27
Author(s): Ye Dee Tay, Marcin Leda, Christos Spanos, Juri Rappsilber, Andrew B. Goryachev, Kenneth E. Sawin
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2018.10.104

Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint
Cited by: 11
Author(s): Thomas Wild, Magda Budzowska, Susanne Hellmuth, Susana Eibes, Gopal Karemore, Marin Barišić, Olaf Stemmann, Chunaram Choudhary
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2018.08.092

Interplay of Histone Marks with Serine ADP-Ribosylation
Cited by: 72
Author(s): Edward Bartlett, Juán José Bonfiglio, Evgeniia Prokhorova, Thomas Colby, Florian Zobel, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.RA119.001876

Identification of Tumor Antigens in the HLA Peptidome of Patient-derived Xenograft Tumors in Mouse
Cited by: 12
Author(s): Nataly Mancette Rijensky, Netta R. Shraga, Eilon Barnea, Nir Peled, Eli Rosenbaum, Aron Popovtzer, Solomon M. Stemmer, Alejandro Livoff, Mark Shlapobersky, Neta Moskovits, Dafna Perry, Eitan Rubin, Itzhak Haviv, Arie Admon
Software Mentions: 1
Published: about 6 years ago

10.1080/21541248.2018.1564472

The CDC42 effector protein MRCKβ autophosphorylates on Threonine 1108
Cited by: 5
Author(s): Mathieu Unbekandt, Sérgio Lilla, Sara Zanivan, Michael F. Olson
Software Mentions: 1
Published: over 7 years ago

10.1038/s41422-020-0294-9

The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm
Cited by: 21
Author(s): Anne Ramat, Maria-Rosa Garcia-Silva, Camille Jahan, Rima Naït-Saïdi, Jérémy Dufourt, Céline Garret, Aymeric Chartier, Julie Cremaschi, Vipul Patel, Mathilde Decourcelle, Amandine Bastide, François Juge, Martine Simonelig
Software Mentions: 1
Published: over 6 years ago

10.1007/s12192-015-0583-2

Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs
Cited by: 67
Author(s): Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, Pierre Goloubinoff
Software Mentions: 1
Published: over 11 years ago

10.1016/j.tcsw.2019.100023

Assembly and disassembly of Aspergillus fumigatus conidial rodlets
Cited by: 25
Author(s): Isabel Valsecchi, Joey Lai, Emmanuel Stephen-Victor, Ariane Pillé, Audrey Beaussart, Victor Lo, Chi L.L. Pham, Vishukumar Aimanianda, Ann H. Kwan, Magalie Duchateau, Quentin Giai Gianetto, Mariette Matondo, Mélanie Lehoux, Donald C. Sheppard, Yves F. Dufrêne, Jagadeesh Bayry, J. Iñaki Guijarro, Margaret Sunde, Jean‐Paul Latgé
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA119.001878

Quantitative Proteomics of Human Heart Samples Collected In Vivo Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation
Cited by: 20
Author(s): Nora Linscheid, Peter Noe Poulsen, Ida Dalgaard Pedersen, Emilie Gregers, Jesper Hastrup Svendsen, Morten S. Olesen, Jesper V. Olsen, Mario Delmar, Alicia Lundby
Software Mentions: 1
Published: about 6 years ago

10.1186/s40064-015-1248-4

Use of ROV for assessing marine litter on the seafloor of Saronikos Gulf (Greece): a way to fill data gaps and deliver environmental education
Cited by: 26
Author(s): Christos Ioakeimidis, George Papatheodorou, Georgia Fermeli, N. Streftaris, E. Papathanassiou
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.cels.2017.09.011

A Compendium of Co-regulated Protein Complexes in Breast Cancer Reveals Collateral Loss Events
Cited by: 44
Author(s): Colm J. Ryan, Susan Kennedy, Ilirjana Bajrami, David Matallanas, Christopher J. Lord
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells8050512

Characterization of Lipid and Lipid Droplet Metabolism in Human HCC
Cited by: 53
Author(s): Nikolaus Berndt, Johannes Eckstein, Niklas Heucke, Robert Gajowski, Martin Stockmann, David Meierhofer, Hermann‐Georg Holzhütter
Software Mentions: 1
Published: about 7 years ago

10.3390/cells9020267

Q-Cell Glioblastoma Resource: Proteomics Analysis Reveals Unique Cell-States Are Maintained in 3D Culture
Cited by: 11
Author(s): Rochelle C.J. D’Souza, Carolin Offenhäuser, Jasmin Straube, Ulrich Baumgartner, Anja Kordowski, Yuchen Li, Brett W. Stringer, Hamish Alexander, Zarnie Lwin, Po-Ling Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd, Bryan W. Day
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.25946

Approaches to the discovery of non-invasive urinary biomarkers of prostate cancer
Cited by: 18
Author(s): Andrej Jedinak, Kevin R. Loughlin, Marsha A. Moses
Software Mentions: 1
Published: almost 8 years ago

10.3390/cells9112416

BAG3 Proteomic Signature under Proteostasis Stress
Cited by: 14
Author(s): Christof Hiebel, Elisabeth Stürner, Meike Hoffmeister, Georg Tascher, Mario Schwarz, Heike Nagel, Christian Behrends, Christian Münch, Christian Behl
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13287-019-1356-0

Human adipose liquid extract induces angiogenesis and adipogenesis: a novel cell-free therapeutic agent
Cited by: 29
Author(s): Yunfan He, Jing Xia, Hsinkai Chen, Liangyue Wang, Chao Deng, Feng Lu
Software Mentions: 1
Published: about 7 years ago

10.3390/cells9112506

Amyloid-β Precursor Protein APP Down-Regulation Alters Actin Cytoskeleton-Interacting Proteins in Endothelial Cells
Cited by: 6
Author(s): Emma Ristori, Vittoria Cicaloni, Laura Salvini, Laura Tinti, Cristina Tinti, Michael Simons, Federico Corti, Sandra Donnini, Marina Ziche
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9091927

FGF2 Inhibits Early Pancreatic Lineage Specification during Differentiation of Human Embryonic Stem Cells
Cited by: 7
Author(s): Rabea Dettmer, Karsten Cirksena, Julia Münchhoff, Jasmin Kresse, Ulf Diekmann, Isabell Niwolik, Falk F. R. Buettner, Ortwin Naujok
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9040847

Structural Similarity with Cholesterol Reveals Crucial Insights into Mechanisms Sustaining the Immunomodulatory Activity of the Mycotoxin Alternariol
Cited by: 19
Author(s): Giorgia Del Favero, Raphaela Maria Mayer, Luca Dellafiora, Lukas Janker, Laura Niederstaetter, Chiara Dall’Asta, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 6 years ago

10.1186/s13287-020-01943-w

UBA2 activates Wnt/β-catenin signaling pathway during protection of R28 retinal precursor cells from hypoxia by extracellular vesicles derived from placental mesenchymal stem cells
Cited by: 11
Author(s): Kyungmin Koh, Soo‐Jin Park, Eun Soo Bae, Van-An Duong, Jong Park, Hookeun Lee, Helen Lew
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9061517

In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis
Cited by: 17
Author(s): Cheol Woo Min, Joonho Park, Jin‐Woo Bae, Ganesh Kumar Agrawal, Randeep Rakwal, Youngsoo Kim, Pingfang Yang, Sun Tae Kim, Ravi Gupta
Software Mentions: 1
Published: about 6 years ago

10.3390/cells9010227

Establishment and Characterization of Paired Primary Cultures of Human Pancreatic Cancer Cells and Stellate Cells Derived from the Same Tumor
Cited by: 4
Author(s): Manoj Amrutkar, Emma Kristine Larsen, Monica Aasrum, Anette Vefferstad Finstadsveen, Per Arne Andresen, Caroline Verbeke
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8010023

Commonly Used Pancreatic Stellate Cell Cultures Differ Phenotypically and in Their Interactions with Pancreatic Cancer Cells
Cited by: 24
Author(s): Daniela Lenggenhager, Manoj Amrutkar, Petra Sántha, Monica Aasrum, Matthias Löhr, Ivar P. Gladhaug, Caroline Verbeke
Software Mentions: 1
Published: over 7 years ago

10.1186/s13287-020-02062-2

Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis
Cited by: 33
Author(s): Sebastian Wangler, Amir Kamali, Christina Wapp, Karin Wuertz‐Kozak, Sonja Häckel, Claudia Fortes, Lorin Michael Benneker, Lisbet Haglund, R. Geoff Richards, Mauro Alini, Marianna Peroglio, Sibylle Grad
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10071616

Cockayne Syndrome-Associated CSA and CSB Mutations Impair Ribosome Biogenesis, Ribosomal Protein Stability, and Global Protein Folding
Cited by: 11
Author(s): Mingyue Qiang, Fatima Khalid, Tamara Phan, Christina Ludwig, Karin Scharffetter‐Kochanek, Sebastian Iben
Software Mentions: 1
Published: about 5 years ago

10.1155/2013/245695

Proteomic Profiling of<i>Ex Vivo</i>Expanded CD34-Positive Haematopoetic Cells Derived from Umbilical Cord Blood
Cited by: 6
Author(s): Heiner Falkenberg, Teja Falk Radke, Gesine Kögler, Kai Stühler
Software Mentions: 1
Published: over 13 years ago

10.3390/cells8020191

The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells
Cited by: 5
Author(s): J. Nováková, Pavel Talacko, Petr Novák, Karel Vališ
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9122580

Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson’s Disease
Cited by: 13
Author(s): Sarah Plum, Britta Eggers, Stefan Helling, Markus Stepath, Carsten Theiß, Renata Leite, Mariana Molina, Lea T. Grinberg, Peter Riederer, Manfred Gerlach, Caroline May, Katrin Marcus
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8070765

Comparison of the RNA Content of Extracellular Vesicles Derived from Paracoccidioides brasiliensis and Paracoccidioides lutzii
Cited by: 41
Author(s): Roberta Peres da Silva, Larissa G. V. Longo, Júlia Pinheiro Chagas da Cunha, Tiago J. P. Sobreira, Márcio L. Rodrigues, Helisson Faoro, Samuel Goldenberg, Lysangela Ronalte Alves, Rosana Puccia
Software Mentions: 1
Published: about 7 years ago

10.1155/2016/2809192

Differential Proteomic Analysis of Human Placenta-Derived Mesenchymal Stem Cells Cultured on Normal Tissue Culture Surface and Hyaluronan-Coated Surface
Cited by: 6
Author(s): Tai‐Chee Wong, Ying Hui Chen, Szu Heng Liu, Mairim Alexandra Solís, Yu Chen, Cheng-Yen Chang, Lynn Ling-Huei Huang
Software Mentions: 1
Published: over 10 years ago

10.3390/cells9102269

Breast Cancer-Derived Microparticles Reduce Cancer Cell Adhesion, an Effect Augmented by Chemotherapy
Cited by: 4
Author(s): Dvir Shechter, Michal Harel, Angshuman Mukherjee, Leonel Munoz Sagredo, David Loven, Elad Prinz, Shimrit Avraham, Véronique Orian−Rousseau, Tamar Geiger, Yuval Shaked, Haguy Wolfenson
Software Mentions: 1
Published: almost 6 years ago

10.1002/sctm.19-0405

Human bone marrow stem/stromal cell osteogenesis is regulated via mechanically activated osteocyte-derived extracellular vesicles
Cited by: 48
Author(s): Kian F. Eichholz, Ian Woods, Mathieu Riffault, Gillian P. Johnson, Michele A. Corrigan, Michelle C. Lowry, Nian Shen, Marie-Noëlle Labour, Kieran Wynne, Lorraine O’Driscoll, David A. Hoey
Software Mentions: 1
Published: about 6 years ago

10.3390/cells10020372

Proteomic Adaptation of Clostridioides difficile to Treatment with the Antimicrobial Peptide Nisin
Cited by: 6
Author(s): Sandra Maaß, Jürgen Bartel, Pierre-Alexander Mücke, Rabea Schlüter, Thomas Sura, Julia Zaschke-Kriesche, Sander H. J. Smits, Dörte Becher
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.26005

Distinct urinary glycoprotein signatures in prostate cancer patients
Cited by: 33
Author(s): Rebeca Kawahara, Fabio Ortega, Lívia Rosa-Fernandes, Vanessa Ribeiro Guimarães, Daniel Quina, Willian Nahas, Veit Schwämmle, Miguel Srougi, Kátia R. M. Leite, Morten Thaysen‐Andersen, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 1
Published: almost 8 years ago

10.7150/thno.38537

PTPN13 induces cell junction stabilization and inhibits mammary tumor invasiveness
Cited by: 10
Author(s): Mohamed Hamyeh, Florence Bernex, Romain M. Larive, Aurélien Naldi, Serge Urbach, Joëlle Simony-Lafontaine, Carole Puech, William Bakhache, Jérôme Solassol, Peter J. Coopman, Wiljan Hendriks, Gilles Freiss
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9071709

Revealing the Proteome of Motor Cortex Derived Extracellular Vesicles Isolated from Amyotrophic Lateral Sclerosis Human Postmortem Tissues
Cited by: 21
Author(s): Natasha Vassileff, Laura J. Vella, Harinda Rajapaksha, Mitch Shambrook, Amirmohammad Nasiri Kenari, Catriona McLean, Andrew F. Hill, Lesley Cheng
Software Mentions: 1
Published: about 6 years ago

10.1016/j.chembiol.2015.01.003

Global Analysis of Protein N-Myristoylation and Exploration of N-Myristoyltransferase as a Drug Target in the Neglected Human Pathogen Leishmania donovani
Cited by: 71
Author(s): Megan H. Wright, Daniel Paape, Elisabeth M. Storck, Remigiusz A. Serwa, Deborah F. Smith, Edward W. Tate
Software Mentions: 1
Published: over 11 years ago

10.1016/j.chembiol.2015.06.024

Systems Analysis of Protein Fatty Acylation in Herpes Simplex Virus-Infected Cells Using Chemical Proteomics
Cited by: 48
Author(s): Remigiusz A. Serwa, Fernando Abaitua, Eberhard Krause, Edward W. Tate, Peter O’Hare
Software Mentions: 1
Published: about 11 years ago

10.1039/c5sc03207e

A novel quenched fluorescent activity-based probe reveals caspase-3 activity in the endoplasmic reticulum during apoptosis
Cited by: 39
Author(s): Yulia Shaulov-Rotem, Emmanuelle Merquiol, Tommy Weiss-Sadan, Ofra Moshel, Seth J. Salpeter, Doron Shabat, Farnusch Kaschani, Markus Kaiser, Galia Blum
Software Mentions: 1
Published: over 10 years ago

10.1039/c5sc01699a

Bridged bicyclic peptides as potential drug scaffolds: synthesis, structure, protein binding and stability
Cited by: 31
Author(s): Marco Bartoloni, Xian Jin, M.J. Marcaida, João Banha, Ivan Dibonaventura, Swathi Bongoni, Kathrin Bartho, Olivia Gräbner, Michael Sefkow, Tamis Darbre, Jean‐Louis Reymond
Software Mentions: 1
Published: over 11 years ago

10.1074/mcp.M116.062448

Norovirus-Mediated Modification of the Translational Landscape via Virus and Host-Induced Cleavage of Translation Initiation Factors
Cited by: 40
Author(s): Edward Emmott, Frédéric Sorgeloos, Sarah Caddy, Surender Vashist, Stanislav V. Sosnovtsev, Richard E. Lloyd, Kate J Heesom, Nicolas Locker, Ian Goodfellow
Software Mentions: 1
Published: over 9 years ago

10.1186/s13148-017-0369-8

PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples
Cited by: 17
Author(s): Roberta Noberini, Rémi Longuespée, Cristina Richichi, Giancarlo Pruneri, Mark Kriegsmann, Giuliana Pelicci, Tiziana Bonaldi
Software Mentions: 1
Published: about 9 years ago

10.1007/s10585-020-10058-8

Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer
Cited by: 4
Author(s): Hannah Voß, M. Wurlitzer, Daniel J Smit, Florian Ewald, Malik Alawi, Michael Spohn, Daniela Indenbirken, Maryam Omidi, Kerstin A. David, Hartmut Juhl, Ronald Simon, Guido Sauter, Lutz Fischer, Jakob R. Izbicki, Mark P. Molloy, Björn Nashan, Hartmut Schlüter, Manfred Jücker
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12014-021-09322-0

Quantitative proteomic analysis of aberrant expressed lysine acetylation in gastrointestinal stromal tumors
Cited by: 1
Author(s): Bo Wang, Long Zhao, Zhidong Gao, Jianyuan Luo, Haoran Zhang, Lin Gan, Kewei Jiang, Shan Wang, Yingjiang Ye, Zhanlong Shen
Software Mentions: 1
Published: about 5 years ago

10.1074/mcp.M116.061986

Quantitative Protein Profiling of Chlamydia trachomatis Growth Forms Reveals Defense Strategies Against Tryptophan Starvation
Cited by: 25
Author(s): Ole Østergaard, Frank Follmann, Anja Olsen, Niels H. H. Heegaard, Peter Andersen, Ida Rosenkrands
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.26342

Tissue proteomics outlines AGR2 AND LOX5 as markers for biochemical recurrence of prostate cancer
Cited by: 8
Author(s): Giovanny Rodrı́guez-Blanco, Lona Zeneyedpour, Diederick Duijvesz, A. Marije Hoogland, Esther I. Verhoef, Charlotte F. Kweldam, Peter C. Burgers, Peter Sillevis Smitt, Chris H. Bangma, Guido Jenster, Geert J.L.H. van Leenders, Lennard J. M. Dekker, Theo M. Luider
Software Mentions: 1
Published: over 7 years ago

10.7150/thno.46934

ATF6 aggravates acinar cell apoptosis and injury by regulating p53/AIFM2 transcription in Severe Acute Pancreatitis
Cited by: 35
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Xinggang Yang, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: over 6 years ago

10.7150/thno.61832

Multi-omic profiling of plasma reveals molecular alterations in children with COVID-19
Cited by: 25
Author(s): Chong Wang, Xufang Li, Wanshan Ning, Sitang Gong, Fengxia Yang, Chunxiao Fang, Yu Gong, Di Wu, Mingbin Huang, Yujie Gou, Shanshan Fu, Yujie Ren, Ruyi Yang, Yang Qiu, Yu Xue, Yi Xu, Xi Zhou
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.27267

Targeting the non-canonical roles of PCNA modifies and increases the response to targeted anti-cancer therapy
Cited by: 14
Author(s): Caroline Krogh Søgaard, Anala Nepal, Vesna Petrović, Animesh Sharma, Nina‐Beate Liabakk, Tonje S. Steigedal, Marit Otterlei
Software Mentions: 1
Published: over 6 years ago

10.1186/s12014-018-9219-8

Proteomic analysis of serum proteins from HIV/AIDS patients with Talaromyces marneffei infection by TMT labeling-based quantitative proteomics
Cited by: 16
Author(s): Yahong Chen, Aiwen Huang, Wen Ao, Zhengwu Wang, Jinjin Yuan, Qing Song, Dali Wei, Hanhui Ye
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.M116.062539

The Primary Effect on the Proteome of ARID1A-mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post-transcriptional Level
Cited by: 21
Author(s): Aaron R. Goldman, Benjamin G. Bitler, Zachary T. Schug, José R. Conejo-Garcia, Rugang Zhang, David W. Speicher
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12014-019-9241-5

Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls
Cited by: 24
Author(s): Tone Berge, Anna Eriksson, Ina Skaara Brorson, Einar August Høgestøl, Pål Berg‐Hansen, Anne P. Døskeland, Olav Mjaavatten, Steffan Daniël Bos, Hanne F. Harbo, Frode S. Berven
Software Mentions: 1
Published: over 7 years ago

10.1186/s12014-016-9116-y

Identification of potential protein biomarkers for early detection of pregnancy in cow urine using 2D DIGE and label free quantitation
Cited by: 30
Author(s): Preeti Rawat, Shveta Bathla, Rubina Kumari Baithalu, Munna Lal Yadav, Sudarshan Kumar, Syed Azmal Ali, Anurag Tiwari, Masoud Lotfan, Jasmine Naru, Manoj Kumar Jena, Pradip Behere, Ashok Kumar Balhara, Rajesh Vashisth, Inderjeet Singh, Ajay Kumar Dang, Jai K. Kaushik, Tushar Kumar Mohanty, Ashok Kumar Mohanty
Software Mentions: 1
Published: about 10 years ago

10.1186/s12014-019-9249-x

Screening differentially expressed proteins from co-cultured hematopoietic cells and bone marrow-derived stromal cells by quantitative proteomics (SILAC) method
Cited by: 7
Author(s): Rui Li, Yi Wang, Bingxin Li, Hui Wang, Feng Guan, Zengqi Tan, Xiang Li
Software Mentions: 1
Published: about 7 years ago

10.1074/mcp.RA118.000767

Rapid Remodeling of the Host Epithelial Cell Proteome by the Listeriolysin O (LLO) Pore-forming Toxin
Cited by: 24
Author(s): Julien Karim Malet, Francis Impens, Frédéric A. Carvalho, Mélanie Hamon, Pascale Cossart, David Ribet
Software Mentions: 1
Published: about 8 years ago

10.1186/1559-0275-11-27

Identification of psoriatic arthritis mediators in synovial fluid by quantitative mass spectrometry
Cited by: 52
Author(s): Daniela Creţu, Ioannis Prassas, Punit Saraon, Ihor Batruch, Rajiv Gandhi, Eleftherios P. Diamandis, Vinod Chandran
Software Mentions: 1
Published: about 12 years ago

10.3390/toxins9100304

Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates
Cited by: 6
Author(s): Valérie Bouchez, Thibaut Douché, Mélody Dazas, Sophie Delaplane, Mariette Matondo, Julia Chamot‐Rooke, Nicole Guiso
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12014-018-9193-1

Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms
Cited by: 13
Author(s): Misol Do, Dohyun Han, Joseph Injae Wang, Hyunsoo Kim, Wooil Kwon, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: over 8 years ago

10.1186/s12014-019-9242-4

Plasma proteomic and autoantibody profiles reveal the proteomic characteristics involved in longevity families in Bama, China
Cited by: 8
Author(s): Shengliang Ye, Li Ma, Rong Zhang, Fengjuan Liu, Peng Jiang, Jun Xu, Haijun Cao, Xi Du, Fen Lin, Lu Cheng, Xuefeng Zhou, Zhihui Shi, Yeheng Liu, Yaojin Huang, Zongkui Wang, Changqing Li
Software Mentions: 1
Published: about 7 years ago

10.1002/cti2.1185

Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid
Cited by: 16
Author(s): Andrew D Foers, Laura F. Dagley, Simon Chatfield, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 6 years ago

10.1002/ctm2.313

Quantitative acetylome analysis reveals histone modifications that may predict prognosis in hepatitis B‐related hepatocellular carcinoma
Cited by: 18
Author(s): Xiaoqiang Chai, Junkang Guo, Rui‐Zhao Dong, Xuan Yang, Chao Deng, Chuan‐Yuan Wei, Jiajie Xu, Weiyu Han, Jia‐Cheng Lu, Chao Gao, Dongmei Gao, Cheng Huang, Aiwu Ke, Shuangqi Li, Huanping Li, Yingming Tian, Zhongkai Gu, Shuxian Liu, Hang Liu, Qilong Chen, Feng Liu, Jian Zhou, Jia Fan, Guo‐Ming Shi, Feizhen Wu, Jia‐Bin Cai
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-018-0268-3

Representing dynamic biological networks with multi-scale probabilistic models
Cited by: 20
Author(s): Alexander Groß, Barbara Kracher, Johann M. Kraus, Silke D. Kühlwein, Astrid S. Pfister, Sebastian Wiese, Katrin Luckert, Oliver Pötz, Thomas Joos, Dries Van Daele, Luc De Raedt, Michael Kühl, Hans A. Kestler
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.RA119.001777

PolySTest: Robust Statistical Testing of Proteomics Data with Missing Values Improves Detection of Biologically Relevant Features
Cited by: 18
Author(s): Veit Schwämmle, Christina E Hagensen, Adelina Rogowska-Wrzesińska, Ole N. Jensen
Software Mentions: 1
Published: about 6 years ago

10.1074/mcp.RA118.001043

Whole Proteome Profiling of N-Myristoyltransferase Activity and Inhibition Using Sortase A
Cited by: 19
Author(s): Andrea Goya Grocin, Remigiusz A. Serwa, Julia Morales-Sanfrutos, Markus Ritzefeld, Edward W. Tate
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins10070304

Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles
Cited by: 20
Author(s): Jiangqi Qu, Liping Shen, Meng Zhao, Wentong Li, Chengxia Jia, Hua Zhu, Qingjing Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins11020111

The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro
Cited by: 3
Author(s): Alexis Voegele, Mirko Sadi, Dorothée Raoux-Barbot, Thibaut Douché, Mariette Matondo, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins12080500

Evaluation of Antifungal Activity of Naja pallida and Naja mossambica Venoms against Three Candida Species
Cited by: 6
Author(s): Ewelina Kuna, Aleksandra Bocian, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Anna Lewińska, Maciej Wnuk
Software Mentions: 1
Published: about 6 years ago

10.1038/s42003-019-0570-8

Proteomic profiling of extracellular vesicles allows for human breast cancer subtyping
Cited by: 117
Author(s): Stamatia Rontogianni, Eleni Synadaki, Bohui Li, Marte C. Liefaard, Esther H. Lips, Jelle Wesseling, Wei Wu, Maarten Altelaar
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-020-0982-5

Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C
Cited by: 19
Author(s): Lena Reimann, Anja N. Schwäble, Anna L. Fricke, Wignand W. D. Mühlhäuser, Yvonne Leber, Keerthika Lohanadan, Martin Puchinger, Sascha Schäuble, Erik Faessler, Heike Wiese, Christa Reichenbach, Bettina L. Knapp, Christian D. Peikert, Friedel Drepper, Udo Hahn, Clemens Kreutz, Peter F.M. van der Ven, Gerald Radziwill, Kristina Djinović-Carugo, Dieter O. Fürst, Bettina Warscheid
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12120792

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora
Cited by: 4
Author(s): Olivier Tremblay, Zachary Thow, A. Rod Merrill
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.RA120.002370

Proteomic Identification of Coxiella burnetii Effector Proteins Targeted to the Host Cell Mitochondria During Infection
Cited by: 9
Author(s): Laura F. Fielden, Nichollas E. Scott, Catherine S Palmer, Chen Ai Khoo, Hayley J Newton, Diana Stojanovski
Software Mentions: 1
Published: over 5 years ago

10.1007/s11248-017-0027-0

Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse
Cited by: 2
Author(s): Vı́tězslav Křı́ž, Michaela Krausová, Petra Burešová, Jan Dobeš, Dušan Hrčkulák, Oľga Babošová, Jiří Švec, Vladimír Kořínek
Software Mentions: 1
Published: about 9 years ago

10.1080/19420889.2019.1643665

CYRI/ Fam49 Proteins Represent a New Class of Rac1 Interactors
Cited by: 6
Author(s): Jamie Whitelaw, Sérgio Lilla, Nikki R. Paul, Loïc Fort, Sara Zanivan, Laura M. Machesky
Software Mentions: 1
Published: over 7 years ago

10.1038/tp.2016.224

Proteomic analysis of the postsynaptic density implicates synaptic function and energy pathways in bipolar disorder
Cited by: 48
Author(s): Melanie Föcking, Patrick Dicker, Lorna M. Lopez, Mafdalena Hryniewiecka, Kieran Wynne, James English, Gerard Cagney, David Cotter
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.RA120.002231

Slight Deuterium Enrichment in Water Acts as an Antioxidant: Is Deuterium a Cell Growth Regulator?
Cited by: 9
Author(s): Xuepei Zhang, Jin Wang, Roman A. Zubarev
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-020-01024-9

Integrated phosphoproteomic and metabolomic profiling reveals perturbed pathways in the hippocampus of gut microbiota dysbiosis mice
Cited by: 21
Author(s): Haiyang Wang, Lanxiang Liu, Xuechen Rao, Benhua Zeng, Ying Yu, Chanjuan Zhou, Li Zeng, Peng Zheng, Juncai Pu, Shaohua Xu, Ke Cheng, Hanping Zhang, Ping Ji, Hong Wei, Peng Xie
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2016.03.024

Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer
Cited by: 3
Author(s): Nicos Angelopoulos, Justin Stebbing, Yang Xu, Georgios Giamas, Hua Zhang
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.02.028

Mass-spectrometry analysis of histone post-translational modifications in pathology tissue using the PAT-H-MS approach
Cited by: 6
Author(s): Roberta Noberini, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.05.023

AHR-dependent changes in the mitochondrial proteome in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 3
Author(s): Hye Jin Hwang, Peter Dornbos, John J. LaPres
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2018.08.037

Phosphoproteome data from abscisic acid and ethylene treated Glycine max leaves
Cited by: 4
Author(s): Ravi Gupta, Cheol Woo Min, Qiong Meng, Tae Hwan Jun, Ganesh Kumar Agrawal, Randeep Rakwal, Sun Tae Kim
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2017.07.012

Quality control and biophysical characterisation data of VanS A
Cited by: 4
Author(s): Charlotte Hughes, Edoardo Longo, Mary K. Phillips‐Jones, Rohanah Hussain
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.dib.2016.07.038

Time-course proteomics dataset monitoring HeLa cells subjected to DTT induced endoplasmic reticulum stress
Cited by: 3
Author(s): Zhe Cheng, Justin Rendleman, Christine Vogel
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2019.104125

High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data
Cited by: 5
Author(s): Talita Helen Bombardelli Gomig, Iglenir João Cavalli, Ricardo Lehtonen Rodrigues de Souza, Aline Castro Rodrigues Lucena, Michel Batista, Kelly Cavalcanti Machado, Fabrício Klerynton Marchini, Fábio Albuquerque Marchi, Rubens Silveira de Lima, Cı́cero de Andrade Urban, Luciane R. Cavalli, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2015.06.015

Proteome-wide dataset generated by iTRAQ-3DLCMS/MS technique for studying the role of FerB protein in oxidative stress in Paracoccus denitrificans
Cited by: 0
Author(s): Vendula Pernikářová, Vojtěch Sedláček, David Potěšil, Iva Procházková, Zbyněk Zdráhal, Pavel Bouchal, Igor Kučera
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.dib.2015.10.018

Data for proteomic analysis of ATP-binding proteins and kinase inhibitor target proteins using an ATP probe
Cited by: 1
Author(s): Jun Adachi, Marina Kishida, Shio Watanabe, Yuki Hashimoto, Kazuna Fukamizu, Takeshi Tomonaga
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2014.08.004

Quantitative analysis of the Escherichia coli proteome
Cited by: 29
Author(s): Jacek R. Wiśniewski, Dariusz Rakus
Software Mentions: 1
Published: over 11 years ago

10.1016/j.dib.2016.05.013

Proteomics data in support of the quantification of the changes of bovine milk proteins during mammary gland involution
Cited by: 10
Author(s): Irina Boggs, Brad C. Hine, Grant Smolenksi, Kasper Hettinga, Lina Zhang, Thomas T. Wheeler
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2015.09.034

Global proteomic characterization of microdissected estrogen receptor positive breast tumors
Cited by: 1
Author(s): Tommaso De Marchi, Ning Qing Liu, Christoph Sting, Marcel Smid, Mila Tjoa, René B. H. Braakman, Theo M. Luider, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2018.10.082

Dataset on the comparative proteomic profiling of mouse saliva and serum from wild type versus the dystrophic mdx-4cv mouse model of dystrophinopathy
Cited by: 5
Author(s): Sandra Murphy, Margit Zweyer, Rustam R. Mundegar, Dieter Swandulla, Kay Ohlendieck
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2016.02.046

Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant
Cited by: 20
Author(s): Lina Zhang, Marita de Waard, Hester Verheijen, Sjef Boeren, Jos A. Hageman, Toon van Hooijdonk, Jacques Vervoort, Johannes B. van Goudoever, Kasper Hettinga
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2018.04.086

Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity
Cited by: 4
Author(s): Shivangi Awasthi, Tapan K. Maity, Benjamin L. Oyler, Xu Zhang, David R. Goodlett, Udayan Guha
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2016.05.073

Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis)
Cited by: 6
Author(s): Katarina Hörnaeus, Julie Guillemant, Jia Mi, Bodil Hernroth, Jonas Bergquist, Sara Bergström Lind
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2016.05.057

Data on the kinetics of in vitro assembled chromatin
Cited by: 2
Author(s): Moritz Völker-Albert, Miriam Caroline Pusch, Andreas Schmidt, Axel Imhof
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2015.06.010

Myristoylation profiling in human cells and zebrafish
Cited by: 9
Author(s): Malgorzata Broncel, Remigiusz A. Serwa, Paulina Ciepla, Eberhard Krause, Margaret J. Dallman, Anthony I. Magee, Edward W. Tate
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.dib.2016.08.017

Hepatic SILAC proteomic data from PANDER transgenic model
Cited by: 3
Author(s): Mark G. Athanason, Stanley M. Stevens, Brant R. Burkhardt
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.RA120.002123

The Neuroproteomic Basis of Enhanced Perception and Processing of Brood Signals That Trigger Increased Reproductive Investment in Honeybee (Apis mellifera) Workers
Cited by: 9
Author(s): Xufeng Zhang, Han Hu, Bin Han, Qiaohong Wei, Lifeng Meng, Fan Wu, Fang Yu, Feng Mao, Chuan Ma, Olav Rueppell, Jianke Li
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2016.02.032

Data for global lysine-acetylation analysis in rice (Oryza sativa)
Cited by: 5
Author(s): Ye Xiong, Kai Zhang, Zhongyi Cheng, Guo‐Liang Wang, Wende Liu
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.05.060

Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
Cited by: 7
Author(s): Razan Sheta, Florence Roux‐Dalvai, Christina M. Woo, Frédéric Fournier, Sylvie Bourassa, Carolyn R. Bertozzi, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: almost 10 years ago

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