cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/cancers13061237

Mast Cell-Derived SAMD14 Is a Novel Regulator of the Human Prostate Tumor Microenvironment
Cited by: 9
Author(s): Linda Teng, Brooke A. Pereira, Shivakumar Keerthikumar, Cheng Huang, Birunthi Niranjan, Sophie N. Lee, Michelle Richards, Ralf B. Schittenhelm, Luc Furic, David Goode, Mitchell G. Lawrence, Renea A. Taylor, Stuart John Ellem, Gail P. Risbridger, Natalie Lister
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-02128-x

Quantitative Succinyl-Proteome Profiling of Camellia sinensis cv. ‘Anji Baicha’ During Periodic Albinism
Cited by: 35
Author(s): Yan-Xia Xu, Chenjia Shen, Jianqiang Ma, Wei Chen, Juan Mao, Yanyan Zhou, Liang Chen
Software Mentions: 2
Published: over 9 years ago

10.3390/cancers13071527

Aminopeptidase Expression in Multiple Myeloma Associates with Disease Progression and Sensitivity to Melflufen
Cited by: 29
Author(s): Juho J. Miettinen, Romika Kumari, Gunnhildur Ásta Traustadóttir, Maiju-Emilia Huppunen, Philipp Sergeev, Muntasir Mamun Majumder, Alexander Schepsky, Thorarinn Gudjonsson, Juha Lievonen, Despina Bazou, Paul Dowling, Peter O Gorman, Ana Slipicevic, Pekka Anttila, Raija Silvennoinen, Nina N. Nupponen, Fredrik Lehmann, Caroline A. Heckman
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: over 5 years ago

10.3390/vaccines9010008

N-terminal VP1 Truncations Favor T = 1 Norovirus-Like Particles
Cited by: 10
Author(s): Ronja Pogan, Victor U. Weiss, Kevin M. Bond, Jasmin Dülfer, Christoph Krisp, Nicholas A. Lyktey, Jürgen Müller-Guhl, Samuele Zoratto, Günter Allmaier, Martin F. Jarrold, César Muñoz‐Fontela, Hartmut Schlüter, Charlotte Uetrecht
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-10493-w

Functional proteomics outlines the complexity of breast cancer molecular subtypes
Cited by: 48
Author(s): Angelo Gámez‐Pozo, Lucía Trilla-Fuertes, Julia Berges-Soria, Nathalie Selevsek, Rocío López-Vacas, Mariana Díaz-Almirón, Paolo Nanni, Jorge M. Arevalillo, Hilario Navarro, Jonas Grossmann, Francisco Gayá Moreno, Rubén Gómez Rioja, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Paloma Maı́n, Jaime Feliú, Purificación Martínez del Prado, Pilar Zamora, Eva Ciruelos, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: about 9 years ago

10.3390/cancers11101478

Protein Expression Profiling Identifies Key Proteins and Pathways Involved in Growth Inhibitory Effects Exerted by Guggulsterone in Human Colorectal Cancer Cells
Cited by: 13
Author(s): Rari Leo, Lubna Therachiyil, Sivaraman K Siveen, Shahab Uddin, Michał Kuliński, Joerg Buddenkotte, Martin Steinhoff, Roopesh Krishnankutty
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-017-11513-5

A Brain-Derived Neurotrophic Factor Mimetic Is Sufficient to Restore Cone Photoreceptor Visual Function in an Inherited Blindness Model
Cited by: 31
Author(s): Conor Daly, Lisa Shine, Theresa Heffernan, Sudhakar Deeti, Alison Reynolds, John O’Connor, Eugene Dillon, David J. Duffy, Walter Kölch, Gerard Cagney, Breandán N. Kennedy
Software Mentions: 2
Published: about 9 years ago

10.1186/s12864-015-1753-4

Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis
Cited by: 44
Author(s): Long-Yau Lin, Chia‐Lang Hsu, Chih‐Lin Hu, Shiao Yun Ko, Hsu-Liang Hsieh, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 2
Published: over 11 years ago

10.1111/acel.12780

Oxidation resistance 1 is a novel senolytic target
Cited by: 81
Author(s): Xin Zhang, Suping Zhang, Xingui Liu, Yingying Wang, Jianhui Chang, Xuan Zhang, Samuel G. Mackintosh, Alan J. Tackett, Yonghan He, Dongwen Lv, Rémi-Martin Laberge, Judith Campisi, Jianrong Wang, Guangrong Zheng, Daohong Zhou
Software Mentions: 2
Published: over 8 years ago

10.1111/acel.12604

Biochemical isolation of myonuclei employed to define changes to the myonuclear proteome that occur with aging
Cited by: 25
Author(s): Alecia Cutler, Eric B. Dammer, Duc M. Doung, Nicholas T. Seyfried, Anita H. Corbett, Grace K. Pavlath
Software Mentions: 2
Published: over 9 years ago

10.3390/v9050115

Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus
Cited by: 70
Author(s): Anne Yuqing Yang, Lu Yu, Zhuo Chen, Shanxue Zhang, Jing Shi, Xiaozhen Zhao, Yuanyou Yang, Deyu Hu, Baoan Song
Software Mentions: 2
Published: over 9 years ago

10.3390/toxins8040105

Quantitative Proteomic Analysis of Venoms from Russian Vipers of Pelias Group: Phospholipases A2 are the Main Venom Components
Cited by: 29
Author(s): Sergey I. Kovalchuk, Rustam H. Ziganshin, Vladislav G. Starkov, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-020-07194-6

The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase
Cited by: 3
Author(s): Julian Droste, Vera Ortseifen, Lena Schaffert, Marcus Persicke, Susanne Schneiker-Bekel, Alfred Pühler, Jörn Kalinowski
Software Mentions: 2
Published: almost 6 years ago

10.3390/v11111023

Investigating the Cellular Transcriptomic Response Induced by the Makona Variant of Ebola Virus in Differentiated THP-1 Cells
Cited by: 5
Author(s): Andrew Bosworth, Stuart Dowall, Stuart D. Armstrong, Xuan Li, Xiaofeng Dong, Christine Bruce, Lisa F. P. Ng, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 2
Published: almost 7 years ago

10.12688/wellcomeopenres.15421.1

Proteome turnover in the bloodstream and procyclic forms of Trypanosoma brucei measured by quantitative proteomics
Cited by: 26
Author(s): Michele Tinti, Maria Lucia S. Güther, Thomas W. M. Crozier, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-019-6151-x

Proteomic analysis showing the signaling pathways involved in the rhizome enlargement process in Nelumbo nucifera
Cited by: 16
Author(s): Dingding Cao, Rebecca Njeri Damaris, Yue Zhang, Meihui Liu, Ming Li, Pingfang Yang
Software Mentions: 2
Published: about 7 years ago

10.1038/s41419-021-03436-x

Alternative splicing of ceramide synthase 2 alters levels of specific ceramides and modulates cancer cell proliferation and migration in Luminal B breast cancer subtype
Cited by: 16
Author(s): Trishna Pani, Kajal Rajput, Animesh Kar, Harsh Sharma, Rituparna Basak, Nihal Medatwal, Sandhini Saha, Gagan Dev, Satish Kumar, Shweta Gupta, Arnab Mukhopadhyay, Dipankar Malakar, Tushar Kanti Maiti, Aneeshkumar G. Arimbasseri, Svs Deo, Ravi Datta Sharma, Avinash Bajaj, Ujjaini Dasgupta
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.03171-19

Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection
Cited by: 20
Author(s): Frédéric A. Carvalho, Anna Spier, Thibault Chaze, Mariette Matondo, Pascale Cossart, Fabrizia Stavru
Software Mentions: 2
Published: over 6 years ago

10.1038/s41421-021-00278-x

Discovery of a cooperative mode of inhibiting RIPK1 kinase
Cited by: 11
Author(s): Huyan Meng, Guowei Wu, Xinsuo Zhao, Anhui Wang, Dekang Li, Yilun Tong, Teng Jin, Ye Cao, Bing Shan, Shichen Hu, Ying Liu, Lifeng Pan, Xiaoxu Tian, Ping Wu, Chao Peng, Junying Yuan, Guohui Li, Tan Li, Zhaoyin Wang, Ying Li
Software Mentions: 2
Published: over 5 years ago

10.1007/s00726-021-03006-7

Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reaction
Cited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.2433

Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls
Cited by: 53
Author(s): Daniel Belstrøm, Rosa Rakownikow Jersie-Christensen, David Lyon, Christian Damgaard, Lars Juhl Jensen, Palle Holmstrup, Jesper V. Olsen
Software Mentions: 2
Published: about 10 years ago

10.1128/mBio.03649-20

Whole-Genome Transformation Promotes tRNA Anticodon Suppressor Mutations under Stress
Cited by: 2
Author(s): Quinten Deparis, Jorge Duitama, María R. Foulquié-Moreno, Johan M. Thevelein
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.00262-21

The Breadth and Molecular Basis of Hcp-Driven Type VI Secretion System Effector Delivery
Cited by: 15
Author(s): Sophie A. Howard, R. Christopher D. Furniss, Dora Bonini, Himani Amin, Patricia Paracuellos, David Zlotkin, Tiago Costa, Asaf Levy, Despoina A. I. Mavridou, Alain Filloux
Software Mentions: 2
Published: over 5 years ago

10.1074/mcp.M115.056481

Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant
Cited by: 28
Author(s): Zhuo A. Chen, Lutz Fischer, Jürgen Cox, Juri Rappsilber
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.4599

Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58
Cited by: 7
Author(s): Agnieszka Hareza, Magda Bakun, Bianka Świderska, Małgorzata Dudkiewicz, Alicja Koscielny, Anna T. Bajur, Jacek Jaworski, Michał Dadlez, Krzysztof Pawłowski
Software Mentions: 2
Published: over 8 years ago

10.1128/mSphere.00792-20

Phosphorylation of Toxoplasma gondii Secreted Proteins during Acute and Chronic Stages of Infection
Cited by: 6
Author(s): Joanna C. Young, Malgorzata Broncel, Helena Teague, Mark Russell, Olivia L. McGovern, Matthew J. Renshaw, David Frith, Ambrosius P. Snijders, Lucy Collinson, Vern B. Carruthers, Sarah E. Ewald, Moritz Treeck
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.9988

Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Cited by: 10
Author(s): Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
Software Mentions: 2
Published: about 6 years ago

10.1128/mSystems.00833-20

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage
Cited by: 10
Author(s): Patrick J. Willems, Igor Fijałkowski, Petra Van Damme
Software Mentions: 2
Published: about 6 years ago

10.1186/s12916-021-02071-9

Absolute quantitative proteomics using the total protein approach to identify novel clinical immunohistochemical markers in renal neoplasms
Cited by: 3
Author(s): Susana Jorge, José Luís Capelo, William A. LaFramboise, Swati Satturwar, Dimitrios Korentzelos, Sheldon Bastacky, Gabriela Quiroga‐Garza, Rajiv Dhir, Jacek R. Wiśniewski, Carlos Lodeiro, Hugo M. Santos
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00089-21

Quantitative Proteomics Reveals that Hsp90 Inhibition Dynamically Regulates Global Protein Synthesis in Leishmania mexicana
Cited by: 7
Author(s): Karunakaran A. Kalesh, Sandeep Sundriyal, Hirunika Perera, Steven L. Cobb, Paul W. Denny
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00500-21

Surface-Shaving Proteomics of Mycobacterium marinum Identifies Biofilm Subtype-Specific Changes Affecting Virulence, Tolerance, and Persistence
Cited by: 6
Author(s): Kirsi Savijoki, Henna Myllymäki, Hanna Luukinen, Lauri Paulamäki, Leena-Maija Vanha-aho, Aleksandra Svorjova, Ilkka T. Miettinen, Adyary Fallarero, Teemu O. Ihalainen, Jari Yli‐Kauhaluoma, Tuula A. Nyman, Mataleena Parikka
Software Mentions: 2
Published: over 5 years ago

10.1016/j.celrep.2019.04.025

Promiscuous Targeting of Cellular Proteins by Vpr Drives Systems-Level Proteomic Remodeling in HIV-1 Infection
Cited by: 66
Author(s): Edward Jd Greenwood, James C Williamson, Agata Sienkiewicz, Adi Naamati, Nicholas J Matheson, Paul J. Lehner
Software Mentions: 2
Published: over 7 years ago

10.1016/j.celrep.2019.09.080

MitoRibo-Tag Mice Provide a Tool for In Vivo Studies of Mitoribosome Composition
Cited by: 22
Author(s): Jakob D. Busch, Miriam Cipullo, Ilian Atanassov, Ana Bratić, Eduardo Silva Ramos, Thomas Schöndorf, Xinping Li, Sarah F Pearce, Dusanka Milenkovic, Joanna Rorbach, Nils‐Göran Larsson
Software Mentions: 2
Published: about 7 years ago

10.1186/s13046-017-0581-6

Annexin A2 could enhance multidrug resistance by regulating NF-κB signaling pathway in pediatric neuroblastoma
Cited by: 31
Author(s): Yi Wang, Kai Chen, Yong Cai, Yuanxia Cai, Xiaojun Yuan, Lifeng Wang, Zhixiang Wu
Software Mentions: 2
Published: about 9 years ago

10.1038/cr.2017.36

Baf60b-mediated ATM-p53 activation blocks cell identity conversion by sensing chromatin opening
Cited by: 18
Author(s): Shuyi Ji, Linying Zhu, Yimeng Gao, Xiaoran Zhang, Yupeng Yan, Jin Cen, Rongxia Li, Rong Zeng, Lujian Liao, Chaoqi Hou, Yawei Gao, Shaorong Gao, Gang Wei, Lijian Hui
Software Mentions: 2
Published: over 9 years ago

10.1002/jev2.12122

Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions
Cited by: 21
Author(s): Glenn Vergauwen, Joeri Tulkens, Cláudio Pinheiro, Francisco Avila Cobos, Sándor Dedeyne, Marie‐Angélique De Scheerder, Linos Vandekerckhove, Francis Impens, Ilkka Miinalainen, Geert Braems, Kris Gevaert, Pieter Mestdagh, Jo Vandesompele, Hannelore Denys, Olivier De Wever, An Hendrix
Software Mentions: 2
Published: over 5 years ago

10.3390/jof6040360

Examining the Impacts of CO2 Concentration and Genetic Compatibility on Perennial Ryegrass—Epichloë festucae var lolii Interactions
Cited by: 7
Author(s): Jennifer Geddes‐McAlister, Arjun Sukumaran, Aurora Patchett, Heather A. Hager, Jenna C. M. Dale, Jennifer L. Roloson, Nicholas Prudhomme, Kim A. Bolton, Benjamin Muselius, Jacqueline E. Powers, Jonathan A. Newman
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.cels.2019.08.005

High-Throughput Assessment of Kinome-wide Activation States
Cited by: 30
Author(s): Thierry Schmidlin, Donna O. Debets, Charlotte A.G.H. van Gelder, Kelly E. Stecker, Stamatia Rontogianni, Bart L. van den Eshof, Kristel Kemper, Esther H. Lips, Maartje van den Biggelaar, Daniel S. Peeper, Albert J. R. Heck, Maarten Altelaar
Software Mentions: 2
Published: about 7 years ago

10.1007/s00535-021-01802-2

Alteration of protein expression and spliceosome pathway activity during Barrett’s carcinogenesis
Cited by: 1
Author(s): Christoph Stingl, Angela Bureo Gonzalez, Coşkun Güzel, Kai Yi N. Phoa, Michail Doukas, Gerben E. Breimer, Sybren L. Meijer, Jacques Bergman, Theo M. Luider
Software Mentions: 2
Published: over 5 years ago

10.1016/j.ijms.2015.07.029

Evaluating the use of HILIC in large-scale, multi dimensional proteomics: Horses for courses?
Cited by: 8
Author(s): Dalila Bensaddek, Armel Nicolas
Software Mentions: 2
Published: about 11 years ago

10.1016/j.ijmm.2015.12.003

Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations
Cited by: 17
Author(s): Luana Maggiore, Lu Yu, Ulrich Omasits, Omar Rossi, Gordon Dougan, Nicholas R. Thomson, Allan Saul, Jyoti S. Choudhary, Christiane Gerke
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12916-019-1478-3

Profiling of the muscle-specific dystroglycan interactome reveals the role of Hippo signaling in muscular dystrophy and age-dependent muscle atrophy
Cited by: 13
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Dina Aweida, Henning Urlaub, Renate Scheibe, Shenhav Cohen, Halyna R. Shcherbata
Software Mentions: 2
Published: almost 7 years ago

10.1074/mcp.O116.058438

Proteoform-Specific Insights into Cellular Proteome Regulation
Cited by: 3
Author(s): Emma L. Norris, Madeleine J. Headlam, Keyur A. Dave, David Smith, Alexander Bukreyev, Toshna Singh, Buddhika A. Jayakody, Keith J. Chappell, Peter L. Collins, Jeffrey J. Gorman
Software Mentions: 2
Published: about 10 years ago

10.1155/2018/3982942

Proteomic Identification of Heat Shock-Induced Danger Signals in a Melanoma Cell Lysate Used in Dendritic Cell-Based Cancer Immunotherapy
Cited by: 7
Author(s): Fermín E. González, Alexey Chernobrovkin, Carlos Pereda, Tamara García-Salum, Andrés Tittarelli, Mercedes López, Flavio Salazar‐Onfray, Roman A. Zubarev
Software Mentions: 2
Published: almost 9 years ago

10.3390/cells10071701

Phosphorylation in the Charged Linker Modulates Interactions and Secretion of Hsp90β
Cited by: 5
Author(s): Lorenz Weidenauer, Manfredo Quadroni
Software Mentions: 2
Published: over 5 years ago

10.3390/cells9081817

Cyclopamine and Rapamycin Synergistically Inhibit mTOR Signalling in Mouse Hepatocytes, Revealing an Interaction of Hedgehog and mTor Signalling in the Liver
Cited by: 4
Author(s): Luise Spormann, Christiane Rennert, Erik Kolbe, Fritzi Ott, Carolin Lossius, Robert Lehmann, Rolf Gebhardt, Thomas Berg, Madlen Matz‐Soja
Software Mentions: 2
Published: over 6 years ago

10.1007/s00401-021-02285-4

Age-associated insolubility of parkin in human midbrain is linked to redox balance and sequestration of reactive dopamine metabolites
Cited by: 26
Author(s): Jacqueline M. Tokarew, Daniel N. El-Kodsi, Nathalie A. Lengacher, Travis K. Fehr, Antoinette Nguyen, Bojan Shutinoski, Brian O’Nuallain, Ming Jin, Jasmine Khan, Andy Cheuk-Him Ng, Juan Li, Quan Jiang, Mei Zhang, Liqun Wang, Rajib Sengupta, Kathryn R. Barber, An Tran, Doo Soon Im, Steve Callaghan, David Park, Stéphanie Zandee, Xiajun Dong, Clemens R. Scherzer, Alexandre Prat, Eve C. Tsai, Masashi Takanashi, Nobutaka Hattori, Jennifer A. Chan, Luigi Zecca, Andrew B. West, Arne Holmgren, Lawrence G. Puente, Gary S. Shaw, Gergely Tóth, John Woulfe, Peggy Taylor, Julianna J. Tomlinson, Michael G. Schlossmacher
Software Mentions: 2
Published: over 5 years ago

10.3390/plants9101370

Comparative Physiological and Proteomic Analysis Reveals Different Involvement of Proteins during Artificial Aging of Siberian Wildrye Seeds
Cited by: 5
Author(s): Lei Xiong, Wenhui Liu, Junlong Zhao, Minghong You, Chaohui Xiong, Yi Xiong, Yanli Xiong, Qingqing Yu, Shiqie Bai, Xiao Ma
Software Mentions: 2
Published: about 6 years ago

10.1530/JME-17-0036

Serum estradiol levels in controlled ovarian stimulation directly affect the endometrium
Cited by: 34
Author(s): Kalim Ullah, Tanzil Ur Rahman, Hai Tao Pan, Meng Guo, Xin Yan Dong, Juan Liu, Lu Jin, Yi Cheng, Ke Zhang, Jun Ren, Xian-Hua Lin, Xiao Xiao Qiu, Ting Ting Wang, He‐Feng Huang, Jian‐Zhong Sheng
Software Mentions: 2
Published: over 9 years ago

10.1007/s00109-017-1582-9

A map of human circular RNAs in clinically relevant tissues
Cited by: 253
Author(s): Philipp G. Maass, Petar Glažar, Sebastian Memczak, Gunnar Dittmar, Irene Hollfinger, Luisa Schreyer, Aisha V. Sauer, Okan Toka, Alessandro Aiuti, Friedrich C. Luft, Nikolaus Rajewsky
Software Mentions: 2
Published: about 9 years ago

10.3390/cells9102272

Small-Molecule Chemical Knockdown of MuRF1 in Melanoma Bearing Mice Attenuates Tumor Cachexia Associated Myopathy
Cited by: 13
Author(s): Volker Adams, Victoria Gußen, Sergey Zozulya, André Cruz, Anselmo Sigari Moriscot, Axel Linke, Siegfried Labeit
Software Mentions: 2
Published: about 6 years ago

10.1074/mcp.RA118.001036

Comparative Secretome Analyses of Human and Zoonotic Staphylococcus aureus Isolates CC8, CC22, and CC398
Cited by: 25
Author(s): Tobias Busche, Mélanie Hillion, Vu Van Loi, David T. Berg, Birgit Walther, Torsten Semmler, Birgit Strommenger, Wolfgang Witte, Christiane Cuny, Alexander Mellmann, Mark A. Holmes, Jörn Kalinowski, Lorenz Adrian, Jörg Bernhardt, Haike Antelmann
Software Mentions: 2
Published: almost 8 years ago

10.3390/cells9040984

Characterization of RNP Networks of PUM1 and PUM2 Post-Transcriptional Regulators in TCam-2 Cells, a Human Male Germ Cell Model
Cited by: 4
Author(s): Maciej Jerzy Smialek, Erkut Ilaslan, Marcin Sajek, Aleksandra Świercz, Damian Mikolaj Janecki, Kamila Kusz-Zamelczyk, Tomasz Woźniak, Maciej Kotecki, Luiza Handschuh, Marek Figlerowicz, Jadwiga Jaruzelska
Software Mentions: 2
Published: over 6 years ago

10.1186/s40170-019-0194-y

CHCHD4 confers metabolic vulnerabilities to tumour cells through its control of the mitochondrial respiratory chain
Cited by: 14
Author(s): Luke W. Thomas, Jenna M. Stephen, Cinzia Esposito, Simon Hoer, Robin Antrobus, Alaa A. Ahmed, Hasan Al-Habib, Margaret Ashcroft
Software Mentions: 2
Published: over 7 years ago

10.3390/cells8020192

In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes
Cited by: 35
Author(s): Georg Tascher, Audrey Burban, Sandrine Camus, Marine Plumel, Stéphanie Chanon, Rémy Le Guével, В. П. Шевченко, Alain Van Dorsselaer, Étienne Lefai, Christiane Guguen‐Guillouzo, Fabrice Bertile
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pbio.3000774

Cell–substrate adhesion drives Scar/WAVE activation and phosphorylation by a Ste20-family kinase, which controls pseudopod lifetime
Cited by: 24
Author(s): Shashi P. Singh, Peter A. Thomason, Sérgio Lilla, Matthias Schaks, Qian Tang, Bruce L. Goode, Laura M. Machesky, Klemens Rottner, Robert H. Insall
Software Mentions: 2
Published: over 6 years ago

10.1016/j.dib.2016.03.024

Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer
Cited by: 3
Author(s): Nicos Angelopoulos, Justin Stebbing, Yang Xu, Georgios Giamas, Hua Zhang
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2016.02.028

Mass-spectrometry analysis of histone post-translational modifications in pathology tissue using the PAT-H-MS approach
Cited by: 6
Author(s): Roberta Noberini, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2016.05.023

AHR-dependent changes in the mitochondrial proteome in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 3
Author(s): Hye Jin Hwang, Peter Dornbos, John J. LaPres
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2018.08.037

Phosphoproteome data from abscisic acid and ethylene treated Glycine max leaves
Cited by: 4
Author(s): Ravi Gupta, Cheol Woo Min, Qiong Meng, Tae Hwan Jun, Ganesh Kumar Agrawal, Randeep Rakwal, Sun Tae Kim
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2017.07.012

Quality control and biophysical characterisation data of VanS A
Cited by: 4
Author(s): Charlotte Hughes, Edoardo Longo, Mary K. Phillips‐Jones, Rohanah Hussain
Software Mentions: 1
Published: about 9 years ago

10.1016/j.dib.2016.07.038

Time-course proteomics dataset monitoring HeLa cells subjected to DTT induced endoplasmic reticulum stress
Cited by: 3
Author(s): Zhe Cheng, Justin Rendleman, Christine Vogel
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2019.104125

High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data
Cited by: 5
Author(s): Talita Helen Bombardelli Gomig, Iglenir João Cavalli, Ricardo Lehtonen Rodrigues de Souza, Aline Castro Rodrigues Lucena, Michel Batista, Kelly Cavalcanti Machado, Fabrício Klerynton Marchini, Fábio Albuquerque Marchi, Rubens Silveira de Lima, Cı́cero de Andrade Urban, Luciane R. Cavalli, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2015.06.015

Proteome-wide dataset generated by iTRAQ-3DLCMS/MS technique for studying the role of FerB protein in oxidative stress in Paracoccus denitrificans
Cited by: 0
Author(s): Vendula Pernikářová, Vojtěch Sedláček, David Potěšil, Iva Procházková, Zbyněk Zdráhal, Pavel Bouchal, Igor Kučera
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2015.10.018

Data for proteomic analysis of ATP-binding proteins and kinase inhibitor target proteins using an ATP probe
Cited by: 1
Author(s): Jun Adachi, Marina Kishida, Shio Watanabe, Yuki Hashimoto, Kazuna Fukamizu, Takeshi Tomonaga
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.dib.2014.08.004

Quantitative analysis of the Escherichia coli proteome
Cited by: 29
Author(s): Jacek R. Wiśniewski, Dariusz Rakus
Software Mentions: 1
Published: almost 12 years ago

10.1016/j.dib.2016.05.013

Proteomics data in support of the quantification of the changes of bovine milk proteins during mammary gland involution
Cited by: 10
Author(s): Irina Boggs, Brad C. Hine, Grant Smolenksi, Kasper Hettinga, Lina Zhang, Thomas T. Wheeler
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2015.09.034

Global proteomic characterization of microdissected estrogen receptor positive breast tumors
Cited by: 1
Author(s): Tommaso De Marchi, Ning Qing Liu, Christoph Sting, Marcel Smid, Mila Tjoa, René B. H. Braakman, Theo M. Luider, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.dib.2018.10.082

Dataset on the comparative proteomic profiling of mouse saliva and serum from wild type versus the dystrophic mdx-4cv mouse model of dystrophinopathy
Cited by: 5
Author(s): Sandra Murphy, Margit Zweyer, Rustam R. Mundegar, Dieter Swandulla, Kay Ohlendieck
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2016.02.046

Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant
Cited by: 20
Author(s): Lina Zhang, Marita de Waard, Hester Verheijen, Sjef Boeren, Jos A. Hageman, Toon van Hooijdonk, Jacques Vervoort, Johannes B. van Goudoever, Kasper Hettinga
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2018.04.086

Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity
Cited by: 4
Author(s): Shivangi Awasthi, Tapan K. Maity, Benjamin L. Oyler, Xu Zhang, David R. Goodlett, Udayan Guha
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2016.05.073

Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis)
Cited by: 6
Author(s): Katarina Hörnaeus, Julie Guillemant, Jia Mi, Bodil Hernroth, Jonas Bergquist, Sara Bergström Lind
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.05.057

Data on the kinetics of in vitro assembled chromatin
Cited by: 2
Author(s): Moritz Völker-Albert, Miriam Caroline Pusch, Andreas Schmidt, Axel Imhof
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2015.06.010

Myristoylation profiling in human cells and zebrafish
Cited by: 9
Author(s): Malgorzata Broncel, Remigiusz A. Serwa, Paulina Ciepla, Eberhard Krause, Margaret J. Dallman, Anthony I. Magee, Edward W. Tate
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2016.08.017

Hepatic SILAC proteomic data from PANDER transgenic model
Cited by: 3
Author(s): Mark G. Athanason, Stanley M. Stevens, Brant R. Burkhardt
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2016.02.032

Data for global lysine-acetylation analysis in rice (Oryza sativa)
Cited by: 5
Author(s): Ye Xiong, Kai Zhang, Zhongyi Cheng, Guo‐Liang Wang, Wende Liu
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2016.05.060

Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
Cited by: 7
Author(s): Razan Sheta, Florence Roux‐Dalvai, Christina M. Woo, Frédéric Fournier, Sylvie Bourassa, Carolyn R. Bertozzi, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: about 10 years ago

10.1016/j.devcel.2018.03.018

Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase
Cited by: 37
Author(s): Jana Link, Dimitra Paouneskou, Maria Velkova, Anahita Daryabeigi, Triin Laos, Sara Labella, Consuelo Barroso, Sarai Pacheco, Alex Montoya, Holger Kramer, Alexander Woglar, Antoine Baudrimont, Sebastian Mathias Markert, Christian Stigloher, Enrique Martínez-Pérez, Alexander Dammermann, Manfred Alsheimer, Monique Zetka, Verena Jantsch
Software Mentions: 1
Published: over 8 years ago

10.1242/dev.199385

A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation
Cited by: 2
Author(s): Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedgen, Christian Thiel, Erdmann Rapp, Thomas Ruppert, Thomas Thumberger, Joachim Wittbrodt
Software Mentions: 1
Published: over 5 years ago

10.3390/diagnostics11060917

Proteomic Exploration of Plasma Exosomes and Other Small Extracellular Vesicles in Pediatric Hodgkin Lymphoma: A Potential Source of Biomarkers for Relapse Occurrence
Cited by: 11
Author(s): Ombretta Repetto, Federica Lovisa, Caterina Elia, Daniel Enderle, Filippo Romanato, Salvatore Buffardi, Alessandra Sala, Marta Pillon, Agostino Steffan, Roberta Burnelli, Lara Mussolin, Maurizio Mascarin, Vallì De Re
Software Mentions: 1
Published: over 5 years ago

10.1242/dmm.040741

SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells
Cited by: 10
Author(s): Daniel N. Itzhak, Francesca Sacco, Nagarjuna Nagaraj, Stefka Tyanova, Matthias Mann, Marta Murgia
Software Mentions: 1
Published: almost 8 years ago

10.1242/dmm.028910

Dynamic changes in the skeletal muscle proteome during denervation-induced atrophy
Cited by: 53
Author(s): Franziska Lang, Sriram Aravamudhan, Hendrik Nolte, Clara Türk, Soraya Hölper, Stefan Müller, Stefan Günther, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.ebiom.2014.10.011

Inhibition of Cyclooxygenase-2 Prevents Chronic and Recurrent Cystitis
Cited by: 83
Author(s): Thomas J. Hannan, Pacita L. Roberts, Terrence E. Riehl, Sjoerd van der Post, Jana Binkley, Drew J. Schwartz, Hiroyuki Miyoshi, Matthias Mack, Reto A. Schwendener, Thomas M. Hooton, Thaddeus S. Stappenbeck, Gunnar C. Hansson, William F. Stenson, Marco Colonna, Ann E. Stapleton, Scott J. Hultgren
Software Mentions: 1
Published: about 12 years ago

10.15252/embj.201694912

Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium
Cited by: 133
Author(s): Steven Reid, Emily Kay, Lisa J. Neilson, Anne Theres Henze, Jens Serneels, Ewan J. McGhee, Sandeep Dhayade, Colin Nixon, John B. G. Mackey, Alice Santi, Karthic Swaminathan, Dimitris Athineos, Vasileios Papalazarou, Francesca Patella, Álvaro Román-Fernández, Yasmin ElMaghloob, Juan R. Hernández-Fernaud, Ralf H. Adams, Shehab Ismail, David M. Bryant, Manuel Salmerón-Sánchez, Laura M. Machesky, Leo M. Carlin, Karen Blyth, Massimiliano Mazzone, Sara Zanivan
Software Mentions: 1
Published: over 9 years ago

10.15252/embj.201899763

Chemical genetic identification of <scp>CDKL</scp> 5 substrates reveals its role in neuronal microtubule dynamics
Cited by: 53
Author(s): Lucas L. Baltussen, Priscilla D. Negraes, Margaux Silvestre, Suzanne Claxton, Max Moeskops, Evangelos Christodoulou, Helen Flynn, Ambrosius P. Snijders, Alysson R. Muotri, Sila K Ultanir
Software Mentions: 1
Published: about 8 years ago

10.15252/embj.2020106177

HDAC6 inhibition restores TDP‐43 pathology and axonal transport defects in human motor neurons with TARDBP mutations
Cited by: 41
Author(s): Raheem Fazal, Steven Boeynaems, Ann Swijsen, Mathias De Decker, Laura Fumagalli, Matthieu Moisse, J. Vanneste, Wenting Guo, Ruben Boon, Thomas Vercruysse, Kristel Eggermont, Bart Swinnen, Jimmy Beckers, Donya Pakravan, Tijs Vandoorne, Pieter Vanden Berghe, Cathérine Verfaillie, Ludo Van Den Bosch, Philip Van Damme
Software Mentions: 1
Published: over 5 years ago

10.15252/embj.2020106188

TPL‐2 kinase induces phagosome acidification to promote macrophage killing of bacteria
Cited by: 13
Author(s): Felix Breyer, Anetta Härtlová, Teresa L. M. Thurston, Helen Flynn, Probir Chakravarty, Julia Janzen, Julien Peltier, Tiaan Heunis, Ambrosius P Snijders, Matthias Trost, Steven C. Ley
Software Mentions: 1
Published: over 5 years ago

10.15252/embj.2019101625

The Arabidopsis Cdk1/Cdk2 homolog <scp>CDKA</scp> ;1 controls chromosome axis assembly during plant meiosis
Cited by: 35
Author(s): Chao Yang, Kostika Sofroni, Erik Wijnker, Yuki Hamamura, Lena Carstens, Hirofumi Harashima, Sara C. Stolze, Daniel Vezon, Liudmila Chelysheva, Zsuzsanna Orbán-Németh, Gaëtan Pochon, Hirofumi Nakagami, Peter Schlögelhofer, Mathilde Grelon, Arp Schnittger
Software Mentions: 1
Published: about 7 years ago

10.15252/embj.201593594

The effects of proteasomal inhibition on synaptic proteostasis
Cited by: 44
Author(s): Vicky Hakim, Laurie D. Cohen, Rina Zuchman, Tamar Ziv, Noam Ziv
Software Mentions: 1
Published: about 10 years ago

10.15252/emmm.202013067

Cysteamine–bicalutamide combination therapy corrects proximal tubule phenotype in cystinosis
Cited by: 18
Author(s): Amer Jamalpoor, Charlotte Agh van Gelder, Fjodor A. Yousef Yengej, Esther A. Zaal, Sante Princiero Berlingerio, Koenraad Veys, Carla Pou Casellas, Koen Voskuil, Khaled Essa, Carola Ammerlaan, Laura Rita Rega, Reini En van der Welle, Marc R. Lilien, Maarten B. Rookmaaker, Hans Clevers, Judith Klumperman, Elena Levtchenko, Celia R. Berkers, Marianne C. Verhaar, Maarten Altelaar, Rosalinde Masereeuw, Manoe J. Janssen
Software Mentions: 1
Published: over 5 years ago

10.15252/emmm.201404461

5‐azacytidine inhibits nonsense‐mediated decay in a <scp>MYC</scp>‐dependent fashion
Cited by: 51
Author(s): Madhuri Bhuvanagiri, Joe Lewis, Kerstin Putzker, Jonas P Becker, Stefan Leicht, Jeroen Krijgsveld, Richa Batra, Brad Turnwald, Bogdan Jovanovic, Christian Hauer, Jana Sieber, Matthias W. Hentze, Andreas E. Kulozik
Software Mentions: 1
Published: about 12 years ago

10.15252/emmm.201809469

Inhibiting MARSs reduces hyperhomocysteinemia‐associated neural tube and congenital heart defects
Cited by: 18
Author(s): Xinyu Mei, Dashi Qi, Ting Zhang, Ying Zhao, Li Jin, Jun‐Li Hou, Jianhua Wang, Yan Lin, Yu Xue, Pingping Zhu, Zexian Liu, Lei Huang, Ji Nie, Shi Wu Wen, Jingyi Ma, Jianhong Ye, Richard H. Finnell, Hexige Saiyin, Hongyan Wang, Jin Zhao, Shimin Zhao, Wei Xu
Software Mentions: 1
Published: almost 7 years ago

10.15252/embr.202050446

Amyloid aggregates accumulate in melanoma metastasis modulating <scp>YAP</scp> activity
Cited by: 19
Author(s): Vittoria Matafora, Francesco Farris, Umberto Restuccia, Simone Tamburri, Giuseppe Martano, Clara Bernardelli, Ana Sofía, Federica Pisati, Francesca Casagrande, Luca Lazzari, Silvia Marsoni, Emanuela Bonoldi, Ángela Bachi
Software Mentions: 1
Published: about 6 years ago

10.15252/embr.202052196

ARHGAP45 controls naïve T‐ and B‐cell entry into lymph nodes and T‐cell progenitor thymus seeding
Cited by: 12
Author(s): Le He, Marie-Pierre Valignat, Lichen Zhang, Léna Gélard, Fanghui Zhang, Valentin Le Guen, Stéphane Audebert, Luc Camoin, Even Fossum, Bjarne Bogen, Hui Wang, Sandrine Henri, Romain Roncagalli, Olivier Théodoly, Yinming Liang, Marie Malissen, Bernard Malissen
Software Mentions: 1
Published: over 5 years ago

10.15252/embr.202050662

FAM111 protease activity undermines cellular fitness and is amplified by gain‐of‐function mutations in human disease
Cited by: 32
Author(s): Saskia Hoffmann, Satyakrishna Pentakota, Andreas Mund, Peter Haahr, Fabian Coscia, Marta Gallo, Matthias Mann, Nicholas M. I. Taylor, Niels Mailand
Software Mentions: 1
Published: about 6 years ago

10.15252/embr.201643534

Brd4‐Brd2 isoform switching coordinates pluripotent exit and Smad2‐dependent lineage specification
Cited by: 22
Author(s): Rosalía Fernández-Alonso, L. S. P. Davidson, Jens Hukelmann, Michael Zengerle, Alan R. Prescott, Angus I. Lamond, A. Ciulli, Gopal P. Sapkota, Greg M. Findlay
Software Mentions: 1
Published: over 9 years ago

10.15252/embr.202050163

USP22 controls necroptosis by regulating receptor‐interacting protein kinase 3 ubiquitination
Cited by: 41
Author(s): Jens Roedig, Lisa Kowald, Thomas Juretschke, Rebekka Karlowitz, Behnaz Ahangarian Abhari, Heiko Roedig, Simone Fulda, Petra Beli, Sjoerd J. L. van Wijk
Software Mentions: 1
Published: almost 6 years ago

10.15252/embr.201541432

A non‐canonical function of Plk4 in centriolar satellite integrity and ciliogenesis through <scp>PCM</scp> 1 phosphorylation
Cited by: 41
Author(s): Akiko Hori, Karin Barnouin, Ambrosius P. Snijders, Takashi Toda
Software Mentions: 1
Published: almost 11 years ago

10.15252/embr.201744810

<scp>SORCS</scp> 1 and <scp>SORCS</scp> 3 control energy balance and orexigenic peptide production
Cited by: 36
Author(s): Aygul Subkhangulova, Anna R. Malik, Guido Hermey, Oliver Popp, Gunnar Dittmar, Thomas Rathjen, Matthew N. Poy, Alexander Stumpf, Prateep Beed, Dietmar Schmitz, Tilman Breiderhoff, Thomas E. Willnow
Software Mentions: 1
Published: over 8 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724