cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1111/cobi.12695

A generalized approach for producing, quantifying, and validating citizen science data from wildlife images
Cited by: 186
Author(s): Alexandra Swanson, Margaret Kosmala, Chris Lintott, Craig Packer
Software Mentions: 2
Published: over 10 years ago

10.1186/s13072-019-0265-x

Citrullination of HP1γ chromodomain affects association with chromatin
Cited by: 17
Author(s): Meike Wiese, Andrew J. Bannister, Srinjan Basu, Wayne Boucher, Kai J. Wohlfahrt, Maria A. Christophorou, Michael L. Nielsen, David Klenerman, Ernest D. Laue, Tony Kouzarides
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.634366

The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress
Cited by: 3
Author(s): Saul Lema A, Marina Klemenčič, Franziska Völlmy, Maarten Altelaar, Christiane Funk
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.12407

Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells
Cited by: 27
Author(s): Quan Zhou, Yueshuai Guo, Bo Zheng, Binbin Shao, Min Jiang, Gaigai Wang, Tao Zhou, Lei Wang, Zuomin Zhou, Xuejiang Guo, Xiaoyan Huang
Software Mentions: 2
Published: almost 12 years ago

10.1016/j.joca.2021.02.008

Circadian time series proteomics reveals daily dynamics in cartilage physiology
Cited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-54618-9

Bacterial DNA induces the formation of heat-resistant disease-associated proteins in human plasma
Cited by: 9
Author(s): Victor Tetz, George Tetz
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-43328-x

ALK4/5-dependent TGF-β signaling contributes to the crosstalk between neurons and microglia following axonal lesion
Cited by: 8
Author(s): Antonella Raffo-Romero, Tanina Arab, Christelle Van Camp, Quentin Lemaire, Maxence Wisztorski, Julien Franck, Soulaimane Aboulouard, Françoise Le Marrec-Croq, Pierre-Éric Sautière, Jacopo Vizioli, Michel Salzet, Christophe Lefebvre
Software Mentions: 2
Published: over 7 years ago

10.7150/thno.37623

Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimens
Cited by: 19
Author(s): Yuichi Abe, Hidekazu Hirano, Hirokazu Shoji, Asa Tada, Junko Isoyama, Akemi Kakudo, Daigo Gunji, Kazufumi Honda, Narikazu Boku, Jun Adachi, Takeshi Tomonaga
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms22073690

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective
Cited by: 10
Author(s): Veronique Jonckheere, Petra Van Damme
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22073740

RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell Cycle
Cited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-70393-4

The proteomic analysis of breast cell line exosomes reveals disease patterns and potential biomarkers
Cited by: 69
Author(s): Yousef Risha, Zoran Minić, Shahrokh M. Ghobadloo, Maxim V. Berezovski
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms19010296

Preservation Method and Phosphate Buffered Saline Washing Affect the Acute Myeloid Leukemia Proteome.
Cited by: 3
Author(s): Rebecca Wangen, Elise Aasebø, Andrea Trentani, Stein Ove Døskeland, Øystein Bruserud, Frode Selheim, Maria Hernandez-Valladares
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22115619

Molecular Mechanisms of Fetal Tendon Regeneration Versus Adult Fibrous Repair
Cited by: 11
Author(s): Iris Ribitsch, Andrea Bileck, Alexander D. Aldoshin, Maciej M. Kańduła, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Ulrike Auer, Sinan Gültekin, Johann Huber, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-70541-w

Changes in the plasma microvesicle proteome during the ovarian hyperstimulation phase of assisted reproductive technology
Cited by: 1
Author(s): Nina Olausson, Fariborz Mobarrez, Roman A. Zubarev, Alexey Chernobrovkin, Dorothea Rutishauser, Katarina Bremme, Eli Westerlund, Outi Hovatta, Håkan Wallén, Peter Henriksson
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70565-2

Kinetic analysis of effects of temperature and time on the regulation of venom expression in Bungarus multicinctus
Cited by: 10
Author(s): Xiao Yin, Shuai Guo, Jihai Gao, Lu Luo, Xuejiao Liao, Mingqian Li, He Su, Zhixing Huang, Jiang Xu, Jin Pei, Shilin Chen
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21051659

The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for Secretion
Cited by: 13
Author(s): Malgorzata Dubiel, Tibo De Coninck, Vinicius Jose Da Silva Osterne, Isabel Verbeke, Daniël Van Damme, Guy Smagghe, Els J.M. Van Damme
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-17756-6

Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds
Cited by: 50
Author(s): Xiaoxi Meng, Shihai Xing, Loida M. Perez, Xiaojun Peng, Zhao QingYong, Edilberto D. Redoña, Cailin Wang, Zhaohua Peng
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19124123

High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines
Cited by: 7
Author(s): Shixiong Wang, Sachin Kumar Singh, Madhumohan R. Katika, Sandra López-Avilés, Antoni Hurtado
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.14272

CD147: a small molecule transporter ancillary protein at the crossroad of multiple hallmarks of cancer and metabolic reprogramming
Cited by: 34
Author(s): Agnieszka A. Kendrick, Johnathon Schafer, Monika Dzieciątkowska, Travis Nemkov, Angelo D’Alessandro, Deepika Neelakantan, Heide L. Ford, Chad G. Pearson, Colin D. Weekes, Kirk C. Hansen, Elan Eisenmesser
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms20235911

Global Proteomic Analysis Reveals Widespread Lysine Succinylation in Rice Seedlings
Cited by: 10
Author(s): Kai Zhang, Ye Xiong, Wenxian Sun, Guo‐Liang Wang, Wende Liu
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms18040725

Methylmercury Induced Neurotoxicity and the Influence of Selenium in the Brains of Adult Zebrafish (Danio rerio)
Cited by: 29
Author(s): Josef Daniel Rasinger, Anne‐Katrine Lundebye, Samuel Penglase, Ståle Ellingsen, Heidi Amlund
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.61816

Proteomics reveals synergy between biomass degrading enzymes and inorganic Fenton chemistry in leaf-cutting ant colonies
Cited by: 7
Author(s): Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-47829-7

Protein Complex Identification and quantitative complexome by CN-PAGE
Cited by: 22
Author(s): Michał Górka, Corné Swart, Beata Siemiątkowska, Silvia Martínez-Jaime, Aleksandra Skirycz, Sebastian Streb, Alexander Graf
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20164013

Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis
Cited by: 34
Author(s): Linda Elowsson Rendin, Anna Löfdahl, Emma Åhrman, Catharina Müller, Thomas Notermans, Barbora Michaliková, Oskar Rosmark, Xin Zhou, Göran Dellgren, Martin Silverborn, Leif Bjermer, Anders Malmström, Anna‐Karin Larsson‐Callerfelt, Hanna Isaksson, Johan Malmström, Gunilla Westergren‐Thorsson
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.60480

Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targets
Cited by: 37
Author(s): Kelsie M Rodriguez, Sara C. Buch-Larsen, Ilsa T Kirby, Ivan Rodriguez Siordia, David Hutin, Marit Rasmussen, Denis M. Grant, Larry L. David, Jason Matthews, Michael L. Nielsen, Michael S. Cohen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-84274-x

Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds
Cited by: 1
Author(s): Eleni Voukali, Nithya Kuttiyarthu Veetil, Pavel Němec, Pavel Stopka, Michal Vinkler
Software Mentions: 2
Published: over 5 years ago

10.1111/jnc.14845

NYX‐2925 induces metabotropic<i>N</i>‐methyl‐<scp>d</scp>‐aspartate receptor (NMDAR) signaling that enhances synaptic NMDAR and α‐amino‐3‐hydroxy‐5‐methyl‐4‐isoxazolepropionic acid receptor
Cited by: 6
Author(s): M. Scott Bowers, Luisa P. Cacheaux, Srishti U. Sahu, Matthew Schmidt, Joseph A. Sennello, Katherine Leaderbrand, M. Amin Khan, Roger A. Kroes, Joseph R. Moskal
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-25059-7

Trafficking, localization and degradation of the Na+,HCO3− co-transporter NBCn1 in kidney and breast epithelial cells
Cited by: 8
Author(s): Christina W. Olesen, Jens Vogensen, Ida Axholm, Marc Severin, Julie Schnipper, Isabella Skandorff Pedersen, Jakob Hjorth von Stemann, Jacob M. Schrøder, Dan Ploug Christensen, Stine Falsig Pedersen
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.12632

Proteomic analysis reveals diverse proline hydroxylation-mediated oxygen-sensing cellular pathways in cancer cells
Cited by: 26
Author(s): Tong Zhou, Luke Erber, Bing Liu, Yankun Gao, Hai Bin Ruan, Yue Chen
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-019-50575-5

Changes in the microsomal proteome of tomato fruit during ripening
Cited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: almost 7 years ago

10.1155/2019/5879616

Circulating Cancer Stem Cell-Derived Extracellular Vesicles as a Novel Biomarker for Clinical Outcome Evaluation
Cited by: 31
Author(s): Davide Brocco, Paola Lanuti, Pasquale Simeone, Giuseppina Bologna, Damiana Pieragostino, Maria Concetta Cufaro, Vincenzo Graziano, Marta Peri, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Ilario Giovanni Rapposelli, Laura Pierdomenico, Eva Ercolino, Fausta Ciccocioppo, Piero Del Boccio, Marco Marchisio, Clara Natoli, Sebastianó Miscia, Nicola Tinari
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20123073

Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis
Cited by: 10
Author(s): Ana Dienstbier, Fabian Amman, Daniel Štipl, Denisa Petráčková, Branislav Večerek
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms21114126

Comprehensive Bioinformatics Identifies Key microRNA Players in ATG7-Deficient Lung Fibroblasts
Cited by: 10
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Jan Fiedler, Xiaoyan Ke, Anna‐Katharina Meinecke, Annette Just, Andreas Pich, Thomas Thum, Meik Kunz
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-59163-4

Chronic irradiation of human cells reduces histone levels and deregulates gene expression
Cited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago

10.1186/s13395-020-00226-5

High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers
Cited by: 24
Author(s): Sebastian Kallabis, Lena Abraham, Stefan Müller, Verena Dzialas, Clara Türk, Janica L. Wiederstein, Theresa Bock, Hendrik Nolte, Leonardo Nogara, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-42436-y

Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition
Cited by: 43
Author(s): James M. Njunge, Agnes Gwela, Nelson Kibinge, Moses Ngari, Lydia Nyamako, Emily Nyatichi, Johnstone Thitiri, Gerard Bryan Gonzales, Robert Bandsma, Judd L. Walson, Evelyn Gitau, James A. Berkley
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-58740-x

Protein sorting into protein bodies during barley endosperm development is putatively regulated by cytoskeleton members, MVBs and the HvSNF7s
Cited by: 10
Author(s): Valentin Roustan, Julia Hilscher, Marieluise Weidinger, Siegfried Reipert, Azita Shabrangy, Claudia Gebert, Bianca Dietrich, Georgi Dermendjiev, Madeleine Schnurer, Pierre Jean Roustan, Eva Stöger, Verena Ibl
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21176153

The Structure of Clostridioides difficile SecA2 ATPase Exposes Regions Responsible for Differential Target Recognition of the SecA1 and SecA2-Dependent Systems
Cited by: 0
Author(s): Nataša Lindič, Jure Loboda, Aleksandra Usenik, Robert Vidmar, Dušan Turk
Software Mentions: 2
Published: about 6 years ago

10.1186/s13287-018-0867-4

Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behavior
Cited by: 26
Author(s): Niketa Sareen, Glen Lester Sequiera, Rakesh Chaudhary, Ejlal Abu‐El‐Rub, Subir Roy Chowdhury, Vikram Sharma, Arun Surendran, Meenal Moudgil, Paul Fernyhough, Amir Ravandi, Sanjiv Dhingra
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-63926-4

A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells
Cited by: 12
Author(s): Sylvie Thuault, Claire Mamelonet, Joëlle Salameh, Kevin Ostacolo, Brice Chanez, Danièle Salaün, Emilie Baudelet, Stéphane Audebert, Luc Camoin, Ali Badache
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-74288-2

Cell-free DNA in plasma as an essential immune system regulator
Cited by: 19
Author(s): Marie Korabečná, Alžběta Zinková, Iva Brynychova, Blanka Chylíková, Petr Přikryl, Lucie Šedová, Pavel Neužil, Ondřej Šeda
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms18112419

Comparative Proteomic Analysis of Lysine Acetylation in Fish CIK Cells Infected with Aquareovirus
Cited by: 11
Author(s): Hongbo Guo, Jie Zhang, Yaping Wang, Chen Bu, Yanyan Zhou, Fang Qin
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-23505-0

Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection
Cited by: 22
Author(s): Patricia Jeannin, Thibault Chaze, Quentin Giai Gianetto, Mariette Matondo, Olivier Gout, Antoine Gessain, Philippe V. Afonso
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms21218210

Comparative Ubiquitome Analysis under Heat Stress Reveals Diverse Functions of Ubiquitination in Saccharina japonica
Cited by: 7
Author(s): Pengyan Zhang, Fuli Liu, Siqing Chen, Zhourui Liang, Wenjun Wang, Xiuyun Sun
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-43154-1

An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation
Cited by: 26
Author(s): Karunakaran A. Kalesh, Saulius Lukauskas, Annabel Borg, Ambrosius P. Snijders, Vinay Ayyappan, Anthony K.L. Leung, Dorian O. Haskard, Peter A. DiMaggio
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-77535-8

Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model
Cited by: 11
Author(s): Federica Anastasi, Francesco Greco, Marialaura Dilillo, Eleonora Vannini, Valentina Cappello, Laura Baroncelli, Mario Costa, Mauro Gemmi, Matteo Caleo, Liam A. McDonnell
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21239043

Multi-Omics Integration Highlights the Role of Ubiquitination in CCl4-Induced Liver Fibrosis
Cited by: 9
Author(s): María Mercado-Gómez, Fernando Lopitz‐Otsoa, Mikel Azkargorta, Marina Serrano‐Maciá, Sofía Lachiondo‐Ortega, Naroa Goikoetxea‐Usandizaga, Rubén Rodríguez-Agudo, David Fernández‐Ramos, Maider Bizkarguenaga, Virginia Gutiérrez‐de Juan, Benoît Lectez, Kerman Aloria, Jesús M. Arizmendi, Jorge Simón, Cristina Alonso, Juan José Lozano, Matías A. Ávila, Jesús M. Bañales, J. J. G. Marin, Naiara Beraza, José M. Mato, Félix Elortza, Rosa Barrio, James D. Sutherland, Ugo Mayor, María Luz Martínez‐Chantar, Teresa C. Delgado
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21249706

Distinct Preflowering Drought Tolerance Strategies of Sorghum bicolor Genotype RTx430 Revealed by Subcellular Protein Profiling
Cited by: 9
Author(s): Aaron J. Ogden, Shadan Abdali, Kristin Engbrecht, Mowei Zhou, Pubudu Handakumbura
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22010428

Salinity Effects on Guard Cell Proteome in Chenopodium quinoa
Cited by: 19
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Lana Shabala, Leiting Li, Ayesha Tahir, Min Yu, Rainer Hedrich, Zhong‐Hua Chen, Richard Wilson, Heng Zhang, Sergey Shabala
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21072331

Sugar Beet (Beta vulgaris) Guard Cells Responses to Salinity Stress: A Proteomic Analysis
Cited by: 15
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Leiting Li, Heng Zhang, Zhong‐Hua Chen, Rainer Hedrich, Richard Wilson, Sergey Shabala
Software Mentions: 2
Published: over 6 years ago

10.18632/oncotarget.8504

ATG9A loss confers resistance to trastuzumab via c-Cbl mediated Her2 degradation
Cited by: 20
Author(s): João Nunes, Hua Zhang, Nicos Angelopoulos, Jyoti Chhetri, Clodia Osipo, Arnhild Grothey, Justin Stebbing, Georgios Giamas
Software Mentions: 2
Published: over 10 years ago

10.1016/j.str.2017.04.005

The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System
Cited by: 11
Author(s): Adrian C. D. Fuchs, Vikram Alva, Lorena Maldoner, R. Albrecht, M.D. Hartmann, Joerg Martin
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-19530-8

APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain shedding
Cited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms20051241

Proteome and Phosphoproteome Analysis in TNF Long Term-Exposed Primary Human Monocytes
Cited by: 8
Author(s): Bastian Welz, Rolf Bikker, Johannes Junemann, Martin Christmann, Konstantin Neumann, Mareike Weber, Leonie Hoffmeister, Katharina Preuß, Andreas Pich, René Huber, Korbinian Brand
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20081895

Quantitative Phosphoproteomic and Physiological Analyses Provide Insights into the Formation of the Variegated Leaf in Catalpa fargesii
Cited by: 8
Author(s): Nan Wang, Tianqing Zhu, Nan Lu, Zhi Wang, Guijuan Yang, Guanzheng Qu, Lisheng Kong, Shougong Zhang, Wenjun Ma, Junhui Wang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20123096

Serum Proteome Alterations in Human Cystathionine β-Synthase Deficiency and Ischemic Stroke Subtypes
Cited by: 10
Author(s): Marta Sikora, I Lewandowska, Małgorzata Kupc, Jolanta Kubalska, Ałła Graban, Łukasz Marczak, Radosław Kaźmierski, Hieronim Jakubowski
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20143528

Comparative Transcriptomic and Proteomic Analysis to Deeply Investigate the Role of Hydrogen Cyanamide in Grape Bud Dormancy
Cited by: 14
Author(s): Muhammad Khalil-Ur-Rehman, Wei Wu, Yang Dong, Muhammad Faheem, Yanshuai Xu, Zhihong Gao, Zhen Guo Shen, Jianmin Tao
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20163893

Secretomics to Discover Regulators in Diseases
Cited by: 31
Author(s): Parkyong Song, Yonghoon Kwon, Jae‐Yeol Joo, Do-Geun Kim, Jong Hyuk Yoon
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20164029

Multi-Omics Approach for Studying Tears in Treatment-Naïve Glaucoma Patients
Cited by: 45
Author(s): Cláudia Rossi, Ilaria Cicalini, Maria Concetta Cufaro, Luca Agnifili, Leonardo Mastropasqua, Paola Lanuti, Marco Marchisio, Vincenzo De Laurenzi, Piero Del Boccio, Damiana Pieragostino
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174135

Identification of Msp1-Induced Signaling Components in Rice Leaves by Integrated Proteomic and Phosphoproteomic Analysis
Cited by: 26
Author(s): Ravi Gupta, Cheol Woo Min, Yujin Kim, Sun Tae Kim
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20194843

Human Cysteine Cathepsins Degrade Immunoglobulin G In Vitro in a Predictable Manner
Cited by: 7
Author(s): Rune Alexander Høglund, Silje Bøen Torsetnes, Andreas Lossius, Bjarne Bogen, E. Jane Homan, Robert D. Bremel, Trygve Holmøy
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20215517

Proteomic Analysis of Urinary Extracellular Vesicles Reveals a Role for the Complement System in Medullary Sponge Kidney Disease
Cited by: 13
Author(s): Maurizio Bruschi, Simona Granata, Giovanni Candiano, Antonia Fabris, Andrea Petretto, Gian Marco Ghiggeri, Giovanni Gambaro, Gianluigi Zaza
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246118

Increased Expression of Immature Mannose-Containing Glycoproteins and Sialic Acid in Aged Mouse Brains
Cited by: 8
Author(s): Frieder Simon, Kaya Bork, Vinayaga S. Gnanapragassam, Tim Baldensperger, Marcus A. Glomb, Simone Di Sanzo, Alessandro Ori, Rüdiger Horstkorte
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010032

Proteomic Analysis of Quercetin-Treated K562 Cells
Cited by: 6
Author(s): Fabrizia Brisdelli, Laura Di Francesco, Alessandra Giorgi, Anna Rita Lizzi, Carla Luzi, Giuseppina Mignogna, Argante Bozzi, Maria Eugenia Schininà
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21030929

Discovery of a Gatekeeper Residue in the C-Terminal Tail of the Extracellular Signal-Regulated Protein Kinase 5 (ERK5)
Cited by: 9
Author(s): Adam J. Pearson, Paul Fullwood, Gabriela Toro-Tapia, Ian Prise, Michael P. Smith, Qiuping Xu, Allan M. Jordan, Emanuele Giurisato, Alan J. Whitmarsh, Chiara Francavilla, Cathy Tournier
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21041200

Comparative Proteomics Profiling Illuminates the Fruitlet Abscission Mechanism of Sweet Cherry as Induced by Embryo Abortion
Cited by: 12
Author(s): Zhilang Qiu, Wen Zhuang, Kun Yang, Tian Tian, Guo Qiao, Yi Hong, Xiaopeng Wen
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21062185

Proteomic Profiles and Biological Processes of Relapsed vs. Non-Relapsed Pediatric Hodgkin Lymphoma
Cited by: 6
Author(s): Ombretta Repetto, Vallì De Re, Lara Mussolin, Massimo Tedeschi, Caterina Elia, Maurizio Bianchi, Salvatore Buffardi, Alessandra Sala, Roberta Burnelli, Maurizio Mascarin
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21093083

In Vitro Salivary Protein Adsorption Profile on Titanium and Ceramic Surfaces and the Corresponding Putative Immunological Implications
Cited by: 8
Author(s): Chenxuan Wei, Michael F. Burrow, MG Botelho, Henry Lam, W. Keung Leung
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21103468

EDEM1 Drives Misfolded Protein Degradation via ERAD and Exploits ER-Phagy as Back-Up Mechanism When ERAD Is Impaired
Cited by: 17
Author(s): Marioara Chirițoiu, Gabriela Chirițoiu, Cristian V. A. Munteanu, Florin Pastrama, N. Erwin Ivessa, Ștefana M. Petrescu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21124461

Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature
Cited by: 12
Author(s): Aaron J. Ogden, Jishnu Bhatt, Heather M. Brewer, Jack Kintigh, Kariuki Samwel Muiruri, Sairam Rudrabhatla, Joshua N. Adkins, Wayne R. Curtis
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21144998

Proteomics Reveals that Methylmalonyl-CoA Mutase Modulates Cell Architecture and Increases Susceptibility to Stress
Cited by: 35
Author(s): Michele Costanzo, Marianna Caterino, Armando Cevenini, Vincent Jung, Cérina Chhuon, Joanna Lipecka, Roberta Fedele, Ida Chiara Guerrera, Margherita Ruoppolo
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21155234

(Phospho)proteomic Profiling of Microsatellite Unstable CRC Cells Reveals Alterations in Nuclear Signaling and Cholesterol Metabolism Caused by Frameshift Mutation of NMD Regulator UPF3A
Cited by: 4
Author(s): Malwina Michalak, Eva-Maria Katzenmaier, Nina Roeckel, Stefan M. Woerner, Vera Fuchs, Uwe Warnken, Yan P. Yuan, Peer Bork, Gabriele Neu‐Yilik, Andreas E. Kulozik, Magnus von Knebel Doeberitz, Matthias Kloor, Jürgen Kopitz, Johannes Gebert
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21165841

Evidence for Enhanced Exosome Production in Aromatase Inhibitor-Resistant Breast Cancer Cells
Cited by: 21
Author(s): Giuseppina Augimeri, Giusi La Camera, Luca Gelsomino, Cinzia Giordano, Salvatore Panza, Diego Sisci, Catia Morelli, Balázs Győrffy, Daniela Bonofiglio, Sebastiano Andò, Ines Barone, Stefania Catalano
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186625

Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease
Cited by: 5
Author(s): Sébastien A. Gauthier, Iwona Pranke, Vincent Jung, Loredana Martignetti, Véronique Stoven, Thao Nguyen‐Khoa, Michaela Semeraro, Alexandre Hinzpeter, Aleksander Edelman, Chiara Guerrera, Isabelle Sermet‐Gaudelus
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21186601

Proteomic Approach for Searching for Universal, Tissue-Specific, and Line-Specific Markers of Extracellular Vesicles in Lung and Colorectal Adenocarcinoma Cell Lines
Cited by: 8
Author(s): Svetlana E. Novikova, N. A. Shushkova, T. E. Farafonova, Olga V. Tikhonova, Roman Kamyshinsky, Victor G. Zgoda
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21197330

Label-Free Mass Spectrometry-Based Quantification of Linker Histone H1 Variants in Clinical Samples
Cited by: 7
Author(s): Roberta Noberini, Cristina Morales Torres, Evelyn Oliva Savoia, Stefania Brandini, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Giuseppe R. Diaferia, Paola Scaffidi, Tiziana Bonaldi
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21207769

A Screen for PKN3 Substrates Reveals an Activating Phosphorylation of ARHGAP18
Cited by: 2
Author(s): Michal Dibus, Jan Brábek, Daniel Rösel
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218121

A Global Proteomic Approach Sheds New Light on Potential Iron-Sulfur Client Proteins of the Chloroplastic Maturation Factor NFU3
Cited by: 4
Author(s): Nathalie Berger, Florence Vignols, Brigitte Touraine, Maël Taupin-Broggini, Valérie Rofidal, Vincent Demolombe, Véronique Santoni, Nicolas Rouhier, Frédéric Gaymard, Christian Dubos
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22010462

The Thyroid Hormone Transporter Mct8 Restricts Cathepsin-Mediated Thyroglobulin Processing in Male Mice through Thyroid Auto-Regulatory Mechanisms That Encompass Autophagy
Cited by: 5
Author(s): Vaishnavi Venugopalan, Alaa Al-Hashimi, Maren Rehders, Janine Golchert, Vivien Reinecke, Georg Homuth, Uwe Völker, Mythili Manirajah, Alae Touzani, Jonas Weber, Matthew Bogyo, François Verrey, Eva K. Wirth, Ulrich Schweizer, Heike Heuer, Janine Kirstein, Klaudia Brix
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22041747

Label-Free Quantitative Phosphoproteomics of the Fission Yeast Schizosaccharomyces pombe Using Strong Anion Exchange- and Porous Graphitic Carbon-Based Fractionation Strategies
Cited by: 5
Author(s): Barbara Siváková, Jan Jurcik, Veronika Lukáčová, Tomas Selicky, Ingrid Čipáková, Péter Baráth, Luboš Čipák
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22041766

Detailed Structure and Pathophysiological Roles of the IgA-Albumin Complex in Multiple Myeloma
Cited by: 1
Author(s): Yuki Kawata, Hisashi Hirano, Ren Takahashi, Yukari Miyano, Ayuko Kimura, Noriyosi Sato, Yukio Morita, Hirokazu Kimura, Kiyotaka Fujita
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22062850

Muscle Proteomic Profile before and after Enzyme Replacement Therapy in Late-Onset Pompe Disease
Cited by: 9
Author(s): Manuela Moriggi, Daniele Capitanio, Enrica Torretta, Pietro Barbacini, Cinzia Bragato, Patrizia Sartori, Maurizio Moggio, Lorenzo Maggi, Marina Mora, Cecilia Gelfi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22063227

Phosphoproteomic Analysis of Subcutaneous and Omental Adipose Tissue Reveals Increased Lipid Turnover in Dairy Cows Supplemented with Conjugated Linoleic Acid
Cited by: 6
Author(s): Jayasimha Rayalu Daddam, H.M. Hammon, A. Tröscher, Laura A. Vogel, M. Gnott, Gitit Kra, Yishai Levin, H. Sauerwein, Maya Zachut
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22094851

A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes
Cited by: 5
Author(s): Juanma Ramírez, Gorka Prieto, Anne Olazabal‐Herrero, Eva Borràs, Elvira Fernández-Vigo, Unai Alduntzin, Nerea Osinalde, Javier Beaskoetxea, Benoît Lectez, Kerman Aloria, José Antonio Rodriguez, Alberto Paradela, Eduard Sabidó, Javier Muñoz, Fernando J. Corrales, Jesús M. Arizmendi, Ugo Mayor
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22094680

Skeletal Muscle Proteomic Profile Revealed Gender-Related Metabolic Responses in a Diet-Induced Obesity Animal Model
Cited by: 11
Author(s): Manuela Moriggi, Sara Belloli, Pietro Barbacini, Valentina Murtaj, Enrica Torretta, Linda Chaabane, Tamara Canu, Silvia Penati, Maria Luisa Malosio, Antonio Esposito, Cecilia Gelfi, Rosa María Moresco, Daniele Capitanio
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115815

Connexin 43 and Connexin 26 Involvement in the Ponatinib-Induced Cardiomyopathy: Sex-Related Differences in a Murine Model
Cited by: 11
Author(s): Rosalinda Madonna, Stefania Moscato, Enza Polizzi, Damiana Pieragostino, Maria Concetta Cufaro, Piero Del Boccio, Francesco Bianchi, Raffaele De Caterina, Letizia Mattii
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22126464

Early Changes in Crayfish Hemocyte Proteins after Injection with a β-1,3-glucan, Compared to Saline Injected and Naive Animals
Cited by: 6
Author(s): Charlotta Ekblom, Kenneth Söderhäll, Irene Söderhäll
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22136750

Changes in the Cell Wall Proteome of Leaves in Response to High Temperature Stress in Brachypodium distachyon
Cited by: 8
Author(s): Artur Piński, Alexander Betekhtin, Bożena Skupień-Rabian, Urszula Jankowska, Élisabeth Jamet, Robert Hasterok
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22137011

Identification of Nrl1 Domains Responsible for Interactions with RNA-Processing Factors and Regulation of Nrl1 Function by Phosphorylation
Cited by: 4
Author(s): Barbora Mikolaskova, Matus Jurcik, Ingrid Čipáková, Tomas Selicky, Jan Jurcik, Silvia Poláková, Erika Stupenova, Andrej Dudáš, Barbara Siváková, Jana Bellová, Péter Baráth, Lucia Aronica, Juraj Gregáň, Luboš Čipák
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22136925

Oral Pathogenic Bacteria-Inducing Neurodegenerative Microgliosis in Human Neural Cell Platform
Cited by: 11
Author(s): Van Thi Ai Tran, Yeon June Kang, Hyun-Kyoung Kim, Hyung‐Ryong Kim, Hansang Cho
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158246

Comparison of Silks from Pseudoips prasinana and Bombyx mori Shows Molecular Convergence in Fibroin Heavy Chains but Large Differences in Other Silk Components
Cited by: 5
Author(s): Michal Rindoš, Lucie Kučerová, Lenka Rouhová, Hana Sehadová, Michal Šerý, Miluše Hradilová, Peter Koník, Michal Žurovec
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158034

Novel Insight in Idiopathic Normal Pressure Hydrocephalus (iNPH) Biomarker Discovery in CSF
Cited by: 9
Author(s): Enrica Torretta, Beatrice Arosio, Pietro Barbacini, Daniele Capitanio, Paolo Rossi, Manuela Moriggi, Mario Clerici, Daniela Mari, Matteo Cesari, Cecilia Gelfi
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179370

Auxin Metabolome Profiling in the Arabidopsis Endoplasmic Reticulum Using an Optimised Organelle Isolation Protocol
Cited by: 4
Author(s): Ludmila Včelařová, Vladimír Skalický, Ivo Chamrád, René Lenobel, Martin Kubeš, Aleš Pěnčík, Ondřej Novák
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179354

Design and Characterization of a Cell-Penetrating Peptide Derived from the SOX2 Transcription Factor
Cited by: 3
Author(s): Neha S. Gandhi, Edina Wang, Anabel Sorolla, Yu Kan, Adil Malik, Jyotsna Batra, Kimberly A. Young, Wan Jun Tie, Pilar Blancafort, Ricardo L. Mancera
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22179642

Tissue-Specific Proteome and Subcellular Microscopic Analyses Reveal the Effect of High Salt Concentration on Actin Cytoskeleton and Vacuolization in Aleurone Cells during Early Germination of Barley
Cited by: 7
Author(s): Georgi Dermendjiev, Madeleine Schnurer, Jakob Weiszmann, Sarah Wilfinger, Emanuel Ott, Claudia Gebert, Wolfram Weckwerth, Verena Ibl
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms221810083

Burn Injury Induces Proinflammatory Plasma Extracellular Vesicles That Associate with Length of Hospital Stay in Women: CRP and SAA1 as Potential Prognostic Indicators
Cited by: 9
Author(s): Robert Maile, Micah L Willis, Laura E. Herring, Alex W. Prevatte, Cressida Mahung, Bruce A. Cairns, Shannon M. Wallet, Leon G. Coleman
Software Mentions: 1
Published: almost 5 years ago

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