cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1074/mcp.RA119.001400

A Label-free Mass Spectrometry Method to Predict Endogenous Protein Complex Composition*
Cited by: 27
Author(s): Zachary McBride, Donglai Chen, Youngwoo Lee, Uma K. Aryal, Jun Xie, Daniel B. Szymanski
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.573266

Pneumolysin Is Responsible for Differential Gene Expression and Modifications in the Epigenetic Landscape of Primary Monocyte Derived Macrophages
Cited by: 5
Author(s): Joby Cole, Adrienn Angyal, Richard D. Emes, Tim Mitchell, Mark J. Dickman, David H. Dockrell
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0177408

Ubiquitylation of the acetyltransferase MOF in Drosophila melanogaster
Cited by: 10
Author(s): Sarah Schunter, Raffaella Villa, Victoria K. Flynn, Jan B. Heidelberger, Anne-Kathrin Classen, Petra Beli, Peter B. Becker
Software Mentions: 2
Published: over 7 years ago

10.3389/fcimb.2018.00145

The Loss of Expression of a Single Type 3 Effector (CT622) Strongly Reduces Chlamydia trachomatis Infectivity and Growth
Cited by: 14
Author(s): Mathilde M. Cossé, Michael L. Barta, Derek J. Fisher, Lena K. Oesterlin, Béatrice Niragire, Stéphanie Perrinet, Gaël A. Millot, P. Scott Hefty, Agathe Subtil
Software Mentions: 2
Published: over 6 years ago

10.3390/biom10111581

The Proteasome Activators Blm10/PA200 Enhance the Proteasomal Degradation of N-Terminal Huntingtin
Cited by: 7
Author(s): Azzam Aladdin, Yanhua Yao, Ciyu Yang, Günther Kahlert, Marvi Ghani, Nikolett Király, Anita Boratkó, Karen Uray, Gunnar Dittmar, Krisztina Tar
Software Mentions: 2
Published: about 4 years ago

10.1074/mcp.M115.050401

Translating Proteomic Into Functional Data: An High Mobility Group A1 (HMGA1) Proteomic Signature Has Prognostic Value in Breast Cancer
Cited by: 30
Author(s): E Maurizio, Jacek R. Wiśniewski, Yari Ciani, Antonella Amato, Laura Arnoldo, Carlotta Penzo, Silvia Pegoraro, Vincenzo Giancotti, Alberto Zambelli, Silvano Piazza, Guidalberto Manfioletti, Riccardo Sgarra
Software Mentions: 2
Published: almost 9 years ago

10.3389/fncel.2021.662035

Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1
Cited by: 10
Author(s): Anchel González-Barriga, Louison Lallemant, Diana Mihaela Dincã, Sandra Bráz, Hélène Polvèche, Paul Magneron, Cédric Pionneau, Aline Huguet-Lachon, Jean‐Baptiste Claude, Cérina Chhuon, Ida Chiara Guerrera, Cyril F. Bourgeois, Didier Auboeuf, Geneviève Gourdon, Mário Gomes‐Pereira
Software Mentions: 2
Published: over 3 years ago

10.1074/mcp.RA120.002273

Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism
Cited by: 7
Author(s): Niels Leijten, Petra A Bakker, Herman P. Spaink, Jeroen den Hertog, Simone Lemeer
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcimb.2017.00521

Immunomodulatory Effects of Amblyomma variegatum Saliva on Bovine Cells: Characterization of Cellular Responses and Identification of Molecular Determinants
Cited by: 12
Author(s): Valérie Rodrigues, Bernard Fernandez, Arthur Vercoutere, Léo Chamayou, Alexandre Andersen, Oana Vigy, Edith Demettre, Martial Séveno, Rosalie Aprelon, Ken Giraud-Girard, Frédéric Stachurski, Étienne Loire, Nathalie Vachiéry, Philippe Holzmüller
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0244493

Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae)
Cited by: 20
Author(s): Jia Wang, Li-Lin Ran, Ying Li, Ying‐Hong Liu
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcimb.2020.00443

Investigating Non-sterilizing Cure in TB Patients at the End of Successful Anti-TB Therapy
Cited by: 20
Author(s): Caroline G. G. Beltran, Tiaan Heunis, James Gallant, Rouxjeane Venter, Nelita du Plessis, André G. Loxton, Matthias Trost, Jill Winter, Stephanus T. Malherbe, Bavesh D Kana, Gerhard Walzl
Software Mentions: 2
Published: about 4 years ago

10.3389/fendo.2019.00872

Dysregulation of the Mitochondrial Proteome Occurs in Mice Lacking Adiponectin Receptor 1
Cited by: 7
Author(s): Mark E Pepin, Christoph Koentges, Katharina Pfeil, Johannes Gollmer, Sophia Kersting, Sebastian Wiese, Michael M. Hoffmann, Katja E. Odening, Constantin von zur Mühlen, Philipp Diehl, Peter Stachon, Dennis Wolf, Adam R. Wende, Christoph Bode, Andreas Zirlik, Heiko Bugger
Software Mentions: 2
Published: almost 5 years ago

10.3390/foods9091147

An Artificial Intelligence Characterised Functional Ingredient, Derived from Rice, Inhibits TNF-α and Significantly Improves Physical Strength in an Inflammaging Population
Cited by: 13
Author(s): Kathy Kennedy, Brian Keogh, Cyril Lopez, Alessandro Adelfio, Brendan Molloy, Alish Kerr, Audrey Wall, Gaël Jalowicki, Thérèse A. Holton, Nora Khaldi
Software Mentions: 2
Published: over 4 years ago

10.3389/fbioe.2018.00019

Phosphoproteome of the Oleaginous Green Alga, Chlorella vulgaris UTEX 395, under Nitrogen-Replete and -Deplete Conditions
Cited by: 1
Author(s): Michael T. Guarnieri, Alida T. Gerritsen, Calvin A. Henard, Eric P. Knoshaug
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-017-3698-2

Global analysis of protein lysine succinylation profiles in common wheat
Cited by: 44
Author(s): Yumei Zhang, Guangyuan Wang, Limin Song, Mu Peng, Wang Shu, Wenxing Liang, Qingsong Lin
Software Mentions: 2
Published: over 7 years ago

10.1155/2013/275390

The Application of SILAC Mouse in Human Body Fluid Proteomics Analysis Reveals Protein Patterns Associated with IgA Nephropathy
Cited by: 10
Author(s): Shilin Zhao, Rongxia Li, Xiaoyan Cai, Wan-Jia Chen, Qingrun Li, Tao Xing, Zhu Wang, Y. Eugene Chen, Rong Zeng, Deng Yueyi
Software Mentions: 2
Published: almost 12 years ago

10.3390/foods9091150

Living the Sweet Life: How Liquorilactobacillus hordei TMW 1.1822 Changes Its Behavior in the Presence of Sucrose in Comparison to Glucose
Cited by: 7
Author(s): Julia Bechtner, Christina Ludwig, Michael Kiening, Frank Jakob, Rudi F. Vogel
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2020.544043

Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models
Cited by: 8
Author(s): Stefan Hauser, Stefanie Schuster, Elena Heuten, Philip Höflinger, Jakob Admard, Yvonne Schelling, Ana Velić, Boris Maček, Stephan Ossowski, Lüdger Schöls
Software Mentions: 2
Published: about 4 years ago

10.3389/fendo.2019.00674

Glucocorticoid Treatment Leads to Aberrant Ion and Macromolecular Transport in Regenerating Zebrafish Fins
Cited by: 18
Author(s): Johannes R. Schmidt, Karina Geurtzen, Martin von Bergen, Kristin Schubert, Franziska Knopf
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00094

Combined Transcriptome and Proteome Analysis of RpoS Regulon Reveals Its Role in Spoilage Potential of Pseudomonas fluorescens
Cited by: 21
Author(s): Xiaoxiang Liu, Jun Xu, Junli Zhu, Peng Du, Aijun Sun
Software Mentions: 2
Published: almost 6 years ago

10.15252/embr.202052289

Role of FAM134 paralogues in endoplasmic reticulum remodeling, ER‐phagy, and Collagen quality control
Cited by: 42
Author(s): Alessio Reggio, Viviana Buonomo, Rayene Berkane, Ramachandra M Bhaskara, Mariana Edith Tellechea, Ilaria Peluso, Elena Polishchuk, Giorgia Di Lorenzo, Carmine Cirillo, Marianna Esposito, Adeela Hussain, Antje K. Huebner, Christian A. Hübner, Carmine Settembre, Gerhard Hummer, Paolo Grumati, Alexandra Stolz
Software Mentions: 2
Published: over 3 years ago

10.1074/mcp.RA118.000593

The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1
Cited by: 44
Author(s): Vivian Delcourt, Mylène Brunelle, Annie Roy, Jean-François Jacques, Michel Salzet, Isabelle Fournier, Xavier Roucou
Software Mentions: 2
Published: almost 6 years ago

10.1074/mcp.M114.044289

Global Proteomics Analysis of the Response to Starvation in C. elegans*
Cited by: 29
Author(s): Mark Larance, Ehsan Pourkarimi, Bin Wang, Alejandro Brenes Murillo, Robert E. Kent, Angus I. Lamond, Anton Gartner
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0168183

Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis
Cited by: 8
Author(s): Daniela Beißer, Farnusch Kaschani, Nadine Graupner, Lars Großmann, Manfred Jensen, Sabrina Ninck, Florian Schulz, Sven Rahmann, Jens Boenigk, Markus Kaiser
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41426-018-0210-2

Associating H2O2-and NO-related changes in the proteome of Mycobacterium smegmatis with enhanced survival in macrophage
Cited by: 9
Author(s): Naadir Ganief, Jessica Sjouerman, Claudia Albeldas, Kehilwe C. Nakedi, Clemens Hermann, Bridget Calder, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 2
Published: almost 6 years ago

10.15252/embj.2020107182

Reciprocal priming between receptor tyrosine kinases at recycling endosomes orchestrates cellular signalling outputs
Cited by: 9
Author(s): Michael P. Smith, Harriet R. Ferguson, Jennifer Ferguson, Egor Zindy, Katarzyna M. Kowalczyk, Thomas Kedward, Christian Bates, Joseph Parsons, Joanne Watson, Sarah Chandler, Paul Fullwood, Stacey Warwood, David Knight, Robert B. Clarke, Chiara Francavilla
Software Mentions: 2
Published: over 3 years ago

10.15252/embj.2019102731

CLUH granules coordinate translation of mitochondrial proteins with mTORC1 signaling and mitophagy
Cited by: 36
Author(s): David Pla‐Martín, Désirée Schatton, Janica L. Wiederstein, Marie‐Charlotte Marx, Salim Khiati, Marcus Krüger, Elena I. Rugarli
Software Mentions: 2
Published: over 4 years ago

10.15252/emmm.201910880

Phosphorylation of TFCP2L1 by CDK1 is required for stem cell pluripotency and bladder carcinogenesis
Cited by: 43
Author(s): Jinbeom Heo, Byeong‐Joo Noh, Seungun Lee, Hye‐Yeon Lee, YongHwan Kim, Jisun Lim, Hyein Ju, Hwan Yeul Yu, Chae‐Min Ryu, Peter Cw Lee, Hee Jong Jeong, Yumi Oh, Kyunggon Kim, Sangjin Kim, Jaekyoung Son, Bumsik Hong, Jong Soo Kim, Yong Mee Cho, Dong‐Myung Shin
Software Mentions: 2
Published: about 5 years ago

10.15252/embj.2020104419

Cyclin A triggers Mitosis either via the Greatwall kinase pathway or Cyclin B
Cited by: 47
Author(s): Nadia Hégarat, Adrijana Crncec, Maria F. Suarez Peredo Rodriguez, Fabio Echegaray Iturra, Yan Gu, Oliver Busby, Paul Lang, Alexis R. Barr, Chris Bakal, Masato T. Kanemaki, Angus I. Lamond, Béla Novák, Tony Ly, Helfrid Hochegger
Software Mentions: 2
Published: over 4 years ago

10.1074/mcp.M114.043489

The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer
Cited by: 278
Author(s): Richard A. Scheltema, Jan-Peter Hauschild, Oliver Lange, Daniel Hornburg, Eduard Denisov, Eugen Damoc, A. Kuehn, Alexander Makarov, Matthias Mann
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13072-021-00382-y

Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex
Cited by: 4
Author(s): Martina Weigt, Qingsong Gao, Hyoju Ban, Haijin He, Guido Mastrobuoni, Stefan Kempa, Wei Chen, Fēi Li
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0150672

Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease
Cited by: 77
Author(s): Payam Emami Khoonsari, Anna Häggmark, Maria Lönnberg, Maria Mikus, Lena Kilander, Lars Lannfelt, Jonas Bergquist, Martin Ingelsson, Peter Nilsson, Kim Kultima, Ganna Shevchenko
Software Mentions: 2
Published: over 8 years ago

10.1074/mcp.TIR118.001131

MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides
Cited by: 87
Author(s): Christoph Wichmann, Florian Meier, Sebastian Virreira Winter, Andreas-David Brunner, Jürgen Cox, Matthias Mann
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0201480

Dissecting the subcellular membrane proteome reveals enrichment of H+ (co-)transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells
Cited by: 16
Author(s): Heidi Pertl-Obermeyer, Peter Lackner, Waltraud X. Schulze, Marion C. Hoepflinger, Margit Hoeftberger, Ilse Foissner, Gerhard Obermeyer
Software Mentions: 2
Published: about 6 years ago

10.1016/j.devcel.2019.04.003

Reductional Meiosis I Chromosome Segregation Is Established by Coordination of Key Meiotic Kinases
Cited by: 27
Author(s): Stefan Galander, Rachael Barton, Weronika E. Borek, Christos Spanos, David A. Kelly, Daniel Robertson, Juri Rappsilber, Adèle L. Marston
Software Mentions: 2
Published: over 5 years ago

10.1242/dmm.045096

CHIP mutations affect the heat shock response differently in human fibroblasts and iPSC-derived neurons
Cited by: 5
Author(s): Stefanie Schuster, Elena Heuten, Ana Velić, Jakob Admard, Matthis Synofzik, Stephan Ossowski, Boris Maček, Stefan Hauser, Lüdger Schöls
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0224148

Integrative proteomic and phosphoproteomic profiling of prostate cell lines
Cited by: 13
Author(s): Maria Katsogiannou, J. Boyer, Alberto Valdeolivas, Élisabeth Rémy, Laurence Calzone, Stéphane Audebert, Palma Rocchi, Luc Camoin, Anaı̈s Baudot
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-016-3361-3

Systematic analysis of the lysine acetylome in Fusarium graminearum
Cited by: 39
Author(s): Shanyue Zhou, Qiwen Yang, Changfa Yin, Lin Liu, Wenxing Liang
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.dib.2015.08.010

Dataset from the global phosphoproteomic mapping of early mitotic exit in human cells
Cited by: 8
Author(s): Samuel Rogers, Rachael A. McCloy, Benjamin L. Parker, Rima Chaudhuri, Velimir Gayevskiy, Nolan J. Hoffman, D. Neil Watkins, Roger J. Daly, David E. James, Andrew Burgess
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0198523

Recombinant purified buffalo leukemia inhibitory factor plays an inhibitory role in cell growth
Cited by: 4
Author(s): Syed Azmal Ali, Dhruba Malakar, Jai K. Kaushik, Ashok Kumar Mohanty, Sanjay Kumar
Software Mentions: 2
Published: over 6 years ago

10.1016/j.devcel.2019.09.018

N-WASP Control of LPAR1 Trafficking Establishes Response to Self-Generated LPA Gradients to Promote Pancreatic Cancer Cell Metastasis
Cited by: 35
Author(s): Amélie Juin, Heather J. Spence, Kirsty J. Martin, Ewan J. McGhee, Matthew Neilson, Marie F.A. Cutiongco, Nikolaj Gadegaard, Gillian Mackay, Loïc Fort, Sérgio Lilla, Gabriela Kalna, Peter A. Thomason, Yvette W. H. Koh, Jim C. Norman, Robert H. Insall, Laura M. Machesky
Software Mentions: 2
Published: about 5 years ago

10.1242/dmm.033092

Fetal articular cartilage regeneration versus adult fibrocartilaginous repair: secretome proteomics unravels molecular mechanisms in an ovine model
Cited by: 16
Author(s): Iris Ribitsch, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Maciej M. Kańduła, Julie Rosser, Eva Haltmayer, Ulrike Auer, Sinan Gültekin, Johann Huber, Andrea Bileck, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-021-02364-y

HLA-B and cysteinylated ligands distinguish the antigen presentation landscape of extracellular vesicles
Cited by: 8
Author(s): Julia Bauzá‐Martinez, Albert J. R. Heck, Wei Wu
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-021-01797-9

Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics
Cited by: 38
Author(s): Chia‐Feng Tsai, Peng Fei Zhang, David Scholten, Kendall J. Martin, Yiting Wang, Rui Zhao, William B. Chrisler, Dhwani Patel, Maowei Dou, Yuzhi Jia, Carolina Reduzzi, Xia Liu, Ronald J. Moore, Kristin Burnum-Johnson, Miao-Hsia Lin, Chuan‐Chih Hsu, Jon Jacobs, Jacob Kagan, Sudhir Srivastava, Karin D. Rodland, H. Steven Wiley, Weijun Qian, Richard Smith, Ying Zhu, Massimo Cristofanilli, Tao Liu, Huiping Liu, Tujin Shi
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-020-0817-4

pH-responsive high stability polymeric nanoparticles for targeted delivery of anticancer therapeutics
Cited by: 137
Author(s): L. Palanikumar, Sumaya Al-Hosani, Mona Kalmouni, Vanessa P. Nguyen, Liaqat Ali, Renu Pasricha, Francisco N. Barrera, Mazin Magzoub
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-15-95

Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry
Cited by: 17
Author(s): Dohyun Han, Seong-Yong Moon, Yikwon Kim, Hophil Min, Youngsoo Kim
Software Mentions: 2
Published: almost 11 years ago

10.1038/s42003-021-01684-3

Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity
Cited by: 28
Author(s): Marcin Luzarowski, Rubén Vicente, Andrei Kiselev, Mateusz Wagner, Dennis Schlossarek, Alexander Erban, Leonardo Perez de Souza, Dorothee Childs, Izabela Wojciechowska, Urszula Luzarowska, Michał Górka, Ewelina Sokołowska, Monika Kosmacz, Juan C. Moreno, Aleksandra Brzezińska, Bhavana Vegesna, Joachim Kopka, Alisdair R. Fernie, Lothar Willmitzer, Jennifer C. Ewald, Aleksandra Skirycz
Software Mentions: 2
Published: almost 4 years ago

10.1038/s42003-020-0795-6

An isothermal shift assay for proteome scale drug-target identification
Cited by: 38
Author(s): Kerri A. Ball, Kristofor Webb, S. J. Coleman, Kira A. Cozzolino, Jeremy Jacobsen, Kevin R. Jones, Michael H. B. Stowell, William M. Old
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12014-019-9243-3

Elucidating the endogenous synovial fluid proteome and peptidome of inflammatory arthritis using label-free mass spectrometry
Cited by: 15
Author(s): Shalini M. Mahendran, Edward Keystone, Roman Krawetz, Kun Liang, Eleftherios P. Diamandis, Vinod Chandran
Software Mentions: 2
Published: over 5 years ago

10.3390/antiox10030378

Nitrosative Redox Homeostasis and Antioxidant Response Defense in Disused Vastus lateralis Muscle in Long-Term Bedrest (Toulouse Cocktail Study)
Cited by: 7
Author(s): Dieter Blottner, Daniele Capitanio, Gabor Trautmann, Sandra Furlan, Guido Gambara, Manuela Moriggi, Katharina Block, Pietro Barbacini, Enrica Torretta, Guillaume Py, Angèle Chopard, Imre Vida, Pompeo Volpe, Cecilia Gelfi, Michele Salanova
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0198404

Investigation of lignocellulolytic enzymes during different growth phases of Ganoderma lucidum strain G0119 using genomic, transcriptomic and secretomic analyses
Cited by: 23
Author(s): Shuai Zhou, Jingsong Zhang, Fuying Ma, Chuanhong Tang, Qingjiu Tang, Xiaoyu Zhang
Software Mentions: 2
Published: over 6 years ago

10.1096/fj.202002484R

Sperm proteins and cancer‐testis antigens are released by the seminiferous tubules in mice and men
Cited by: 14
Author(s): Liza O’Donnell, Diane Rebourcet, Laura F. Dagley, Raouda Sgaier, Giuseppe Infusini, Peter J. O’Shaughnessy, Frédéric Chalmel, Daniela Fietz, W. Weidner, Julien M. D. Legrand, Robin M. Hobbs, Robert I McLachlan, Andrew I. Webb, Adrian Pilatz, Thorsten Diemer, Lee B. Smith, Peter G. Stanton
Software Mentions: 2
Published: almost 4 years ago

10.1111/cobi.12695

A generalized approach for producing, quantifying, and validating citizen science data from wildlife images
Cited by: 186
Author(s): Alexandra Swanson, Margaret Kosmala, Chris Lintott, Craig Packer
Software Mentions: 2
Published: over 8 years ago

10.1186/s13072-019-0265-x

Citrullination of HP1γ chromodomain affects association with chromatin
Cited by: 17
Author(s): Meike Wiese, Andrew J. Bannister, Srinjan Basu, Wayne Boucher, Kai J. Wohlfahrt, Maria A. Christophorou, Michael L. Nielsen, David Klenerman, Ernest D. Laue, Tony Kouzarides
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.634366

The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress
Cited by: 3
Author(s): Saul Lema A, Marina Klemenčič, Franziska Völlmy, Maarten Altelaar, Christiane Funk
Software Mentions: 2
Published: almost 4 years ago

10.1111/jcmm.12407

Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells
Cited by: 27
Author(s): Quan Zhou, Yueshuai Guo, Bo Zheng, Binbin Shao, Min Jiang, Gaigai Wang, Tao Zhou, Lei Wang, Zuomin Zhou, Xuejiang Guo, Xiaoyan Huang
Software Mentions: 2
Published: about 10 years ago

10.18632/oncotarget.14272

CD147: a small molecule transporter ancillary protein at the crossroad of multiple hallmarks of cancer and metabolic reprogramming
Cited by: 34
Author(s): Agnieszka A. Kendrick, Johnathon Schafer, Monika Dzieciątkowska, Travis Nemkov, Angelo D’Alessandro, Deepika Neelakantan, Heide L. Ford, Chad G. Pearson, Colin D. Weekes, Kirk C. Hansen, Elan Eisenmesser
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0140100

The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp.
Cited by: 20
Author(s): Juliane Germer, Karlheinz Mann, Gert Wörheide, Daniel J. Jackson
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0215909

Protein expression profiling of plasma and lungs at different stages of metastatic development in a human triple negative breast cancer xenograft model
Cited by: 13
Author(s): Maria K. Tveitarås, Frode Selheim, Kristina Sortland, Rolf K. Reed, Linda Elin Birkhaug Stuhr
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0169862

Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells
Cited by: 18
Author(s): Shani Ben-Lulu, Tamar Ziv, Pnina Weisman-Shomer, Moran Benhar
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.RA119.001876

Identification of Tumor Antigens in the HLA Peptidome of Patient-derived Xenograft Tumors in Mouse
Cited by: 12
Author(s): Nataly Mancette Rijensky, Netta R. Shraga, Eilon Barnea, Nir Peled, Eli Rosenbaum, Aron Popovtzer, Solomon M. Stemmer, Alejandro Livoff, Mark Shlapobersky, Neta Moskovits, Dafna Perry, Eitan Rubin, Itzhak Haviv, Arie Admon
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA119.001878

Quantitative Proteomics of Human Heart Samples Collected In Vivo Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation
Cited by: 20
Author(s): Nora Linscheid, Peter Noe Poulsen, Ida Dalgaard Pedersen, Emilie Gregers, Jesper Hastrup Svendsen, Morten S. Olesen, Jesper V. Olsen, Mario Delmar, Alicia Lundby
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0182561

A large scale Plasmodium vivax- Saimiri boliviensis trophozoite-schizont transition proteome
Cited by: 16
Author(s): Dave Anderson, Stacey A. Lapp, John W. Barnwell, Mary R. Galinski
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0126823

Characterization of the Proteome of Cytoplasmic Lipid Droplets in Mouse Enterocytes after a Dietary Fat Challenge
Cited by: 35
Author(s): Theresa D’Aquila, Devika Sirohi, Jeffrey M. Grabowski, Victoria Hedrick, Lake N. Paul, Andrew S. Greenberg, Richard Kühn, Kimberly K. Buhman
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.M116.062448

Norovirus-Mediated Modification of the Translational Landscape via Virus and Host-Induced Cleavage of Translation Initiation Factors
Cited by: 40
Author(s): Edward Emmott, Frédéric Sorgeloos, Sarah Caddy, Surender Vashist, Stanislav V. Sosnovtsev, Richard E. Lloyd, Kate J Heesom, Nicolas Locker, Ian Goodfellow
Software Mentions: 1
Published: over 7 years ago

10.3390/biom11020164

LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome
Cited by: 23
Author(s): Joseph Gillen, Thunnicha Ondee, Devikala Gurusamy, Jiraphorn Issara-Amphorn, Nathan P. Manes, Sung Hwan Yoon, Asada Leelahavanichkul, Aleksandra Nita‐Lazar
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0072207

Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics
Cited by: 40
Author(s): Dominika Lewandowska, Sara ten Have, Kelly Hodge, Vinciane Tillemans, Angus I. Lamond, John W. Brown
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0221024

Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis
Cited by: 21
Author(s): Kassaporn Duangkumpha, Thomas Stoll, Jutarop Phetcharaburanin, Puangrat Yongvanit, Raynoo Thanan, Anchalee Techasen, Nisana Namwat, Narong Khuntikeo, Nittaya Chamadol, Sittiruk Roytrakul, Jason Mulvenna, Ahmed Mohamed, Alok K. Shah, Michelle M. Hill, Watcharin Loilome
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0058456

Cell Cycle-Regulated Protein Abundance Changes in Synchronously Proliferating HeLa Cells Include Regulation of Pre-mRNA Splicing Proteins
Cited by: 19
Author(s): Karen R. Lane, Yu Yoshida, Patrick E. Lackey, Xian Chen, William F. Marzluff, Jeanette Gowen Cook
Software Mentions: 1
Published: over 11 years ago

10.1074/mcp.M116.061986

Quantitative Protein Profiling of Chlamydia trachomatis Growth Forms Reveals Defense Strategies Against Tryptophan Starvation
Cited by: 25
Author(s): Ole Østergaard, Frank Follmann, Anja Olsen, Niels H. H. Heegaard, Peter Andersen, Ida Rosenkrands
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.M116.062539

The Primary Effect on the Proteome of ARID1A-mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post-transcriptional Level
Cited by: 21
Author(s): Aaron R. Goldman, Benjamin G. Bitler, Zachary T. Schug, José R. Conejo-Garcia, Rugang Zhang, David W. Speicher
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0226235

Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose
Cited by: 5
Author(s): Nagendra Prasad Kurumbang, Jessica M. Vera, Alexander S. Hebert, Joshua J. Coon, Robert Landick
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA118.000767

Rapid Remodeling of the Host Epithelial Cell Proteome by the Listeriolysin O (LLO) Pore-forming Toxin
Cited by: 24
Author(s): Julien Karim Malet, Francis Impens, Frédéric A. Carvalho, Mélanie Hamon, Pascale Cossart, David Ribet
Software Mentions: 1
Published: over 6 years ago

10.3390/biom11081094

What Antarctic Plants Can Tell Us about Climate Changes: Temperature as a Driver for Metabolic Reprogramming
Cited by: 14
Author(s): Laura Bertini, Flora Cozzolino, Sara Proietti, Gaia Salvatore Falconieri, Ilaria Iacobucci, Rosanna Salvia, Patrizia Falabella, Maria Monti, Carla Caruso
Software Mentions: 1
Published: over 3 years ago

10.3390/antibiotics10050501

Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate
Cited by: 1
Author(s): Suruchi Nepal, Sandra Maaß, Stefano Grasso, Francis M. Cavallo, Jürgen Bartel, Dörte Becher, Erik Bathoorn, Jan Maarten van Dijl
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0050545

Proteomic Investigations of Lysine Acetylation Identify Diverse Substrates of Mitochondrial Deacetylase Sirt3
Cited by: 129
Author(s): E-ri Maria Sol, Sebastian Wagner, Brian T. Weinert, Amit Kumar, Hyun‐Seok Kim, Chu‐Xia Deng, Chunaram Choudhary
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0039494

An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange
Cited by: 15
Author(s): Jiaping Song, Rong Sun, Dazhi Li, Fengji Tan, Xin Li, Pingping Jiang, X. Huang, Liang Lin, Zhiming Deng, Yong Zhang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0025884

A SILAC-Based Screen for Methyl-CpG Binding Proteins Identifies RBP-J as a DNA Methylation and Sequence-Specific Binding Protein
Cited by: 49
Author(s): Stefanie J. J. Bartels, Cornelia G. Spruijt, Arie B. Brinkman, Pascal W.T.C. Jansen, Michiel Vermeulen, Hendrik G. Stunnenberg
Software Mentions: 1
Published: about 13 years ago

10.1074/mcp.RA119.001777

PolySTest: Robust Statistical Testing of Proteomics Data with Missing Values Improves Detection of Biologically Relevant Features
Cited by: 18
Author(s): Veit Schwämmle, Christina E Hagensen, Adelina Rogowska-Wrzesińska, Ole N. Jensen
Software Mentions: 1
Published: over 4 years ago

10.3390/biom11081230

Epithelial Cell Line Derived from Endometriotic Lesion Mimics Macrophage Nervous Mechanism of Pain Generation on Proteome and Metabolome Levels
Cited by: 4
Author(s): Benjamin Neuditschko, Marlene Leibetseder, Julia Brunmair, Gerhard Hagn, Lukas Skos, Marlene C. Gerner, Samuel M. Meier‐Menches, Iveta Yotova, Christopher Gerner
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0139591

Malaria Parasite-Infected Erythrocytes Secrete PfCK1, the Plasmodium Homologue of the Pleiotropic Protein Kinase Casein Kinase 1
Cited by: 29
Author(s): Dominique Dorin‐Semblat, Claudia Demarta‐Gatsi, Romain Hamelin, Florence Armand, Teresa G. Carvalho, Marc Moniatte, Christian Doerig
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0036619

Comparative SILAC Proteomic Analysis of Trypanosoma brucei Bloodstream and Procyclic Lifecycle Stages
Cited by: 149
Author(s): Michael D. Urbaniak, Maria Lucia S. Güther, Michael A. J. Ferguson
Software Mentions: 1
Published: over 12 years ago

10.3390/biom11010113

Eicosanoid Content in Fetal Calf Serum Accounts for Reproducibility Challenges in Cell Culture
Cited by: 11
Author(s): Laura Niederstaetter, Benjamin Neuditschko, Julia Brunmair, Lukas Janker, Andrea Bileck, Giorgia Del Favero, Christopher Gerner
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0233639

Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes
Cited by: 6
Author(s): Julie A.D. Van, Sergi Clotet-Freixas, Anne-Christin Hauschild, Ihor Batruch, Igor Jurišica, Yesmino Elia, Farid H. Mahmud, Etienne Sochett, Eleftherios P. Diamandis, James W. Scholey, Ana Konvalinka
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0115228

HSP90 Inhibition Enhances Antimitotic Drug-Induced Mitotic Arrest and Cell Death in Preclinical Models of Non-Small Cell Lung Cancer
Cited by: 15
Author(s): Brenda O’Connell, Katie O’Callaghan, Bonnie Tillotson, Mark Douglas, Nafeeza Hafeez, Kip A. West, Howard M. Stern, Janid A. Ali, Paul S. Changelian, Christian Fritz, Vito J. Palombella, Karen McGovern, Jeffery L. Kutok
Software Mentions: 1
Published: almost 10 years ago

10.1074/mcp.RA118.001043

Whole Proteome Profiling of N-Myristoyltransferase Activity and Inhibition Using Sortase A
Cited by: 19
Author(s): Andrea Goya Grocin, Remigiusz A. Serwa, Julia Morales-Sanfrutos, Markus Ritzefeld, Edward W. Tate
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0193677

Mobile phone specific electromagnetic fields induce transient DNA damage and nucleotide excision repair in serum-deprived human glioblastoma cells
Cited by: 13
Author(s): Halh Al-Serori, Franziska Ferk, Michael Kundi, Andrea Bileck, Christopher Gerner, Miroslav Mišík, Armen Nersesyan, Monika Waldherr, Manuel Murbach, Tamara T. Lah, Christel Herold‐Mende, Andrew Collins, Siegfried Knasmüller
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA120.002370

Proteomic Identification of Coxiella burnetii Effector Proteins Targeted to the Host Cell Mitochondria During Infection
Cited by: 9
Author(s): Laura F. Fielden, Nichollas E. Scott, Catherine S Palmer, Chen Ai Khoo, Hayley J Newton, Diana Stojanovski
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0123403

Comparative Proteome Analysis of Multi-Layer Cocoon of the Silkworm, Bombyx mori
Cited by: 33
Author(s): Yan Zhang, Ping Zhao, Dandan Wang, Pengchao Guo, Xiaomeng Guo, Qianru Song, Weiwei Zhang, Qingyou Xia
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0228893

Changes in the proteome of sea urchin Paracentrotus lividus coelomocytes in response to LPS injection into the body cavity
Cited by: 7
Author(s): Luigi Inguglia, Marco Chiaramonte, Vincenzo Arizza, Lilla Turiák, Károly Vékey, László Drahos, Rosa Pitonzo, Giuseppe Avellone, Vita Di Stefano
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0152231

A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins
Cited by: 21
Author(s): Siddarth Soni, A. Raaijmakers, Linsey M. Raaijmakers, Johan Damen, Leonie van Stuijvenberg, Marc A. Vos, Albert J. R. Heck, Toon A.B. van Veen, Arjen Scholten
Software Mentions: 1
Published: over 8 years ago

10.1074/mcp.RA120.002231

Slight Deuterium Enrichment in Water Acts as an Antioxidant: Is Deuterium a Cell Growth Regulator?
Cited by: 9
Author(s): Xuepei Zhang, Jin Wang, Roman A. Zubarev
Software Mentions: 1
Published: about 4 years ago

10.3390/biomedicines8080246

Mass-Spectrometry Based Proteome Comparison of Extracellular Vesicle Isolation Methods: Comparison of ME-kit, Size-Exclusion Chromatography, and High-Speed Centrifugation
Cited by: 30
Author(s): Anders Askeland, Anne Borup, Ole Østergaard, Jesper V. Olsen, Sigrid Marie Lund, Gunna Christiansen, Søren Risom Kristensen, Niels H. H. Heegaard, Shona Pedersen
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines9081013

Regulation of the HTRA2 Protease Activity by an Inhibitory Antibody-Derived Peptide Ligand and the Influence on HTRA2-Specific Protein Interaction Networks in Retinal Tissues
Cited by: 7
Author(s): Carsten Schmelter, Kristian Nzogang Fomo, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 3 years ago

10.3390/antibiotics9110757

Putative Antimicrobial Peptides of the Posterior Salivary Glands from the Cephalopod Octopus vulgaris Revealed by Exploring a Composite Protein Database
Cited by: 6
Author(s): Daniela Almeida, Dany Domínguez-Pérez, Ana Lemos de Matos, Guillermı́n Agüero-Chapin, Hugo Osório, Vı́tor Vasconcelos, Alexandre Campos, Agostinho Antunes
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0139083

Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells
Cited by: 25
Author(s): Juanma Ramírez, Martínez Amador, Benoît Lectez, So Young Lee, Maribel Franco, Rosa Barrio, Gunnar Dittmar, Ugo Mayor
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0118974

Metabolic Remodeling in Moderate Synchronous versus Dyssynchronous Pacing-Induced Heart Failure: Integrated Metabolomics and Proteomics Study
Cited by: 37
Author(s): Junko Shibayama, Tatiana Yuzyuk, James E. Cox, Aman Makaju, Matt Miller, Justin G. Lichter, Hui Li, Jane D Leavy, Sarah Franklin, Zaĭtsev Av
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.RA120.002123

The Neuroproteomic Basis of Enhanced Perception and Processing of Brood Signals That Trigger Increased Reproductive Investment in Honeybee (Apis mellifera) Workers
Cited by: 9
Author(s): Xufeng Zhang, Han Hu, Bin Han, Qiaohong Wei, Lifeng Meng, Fan Wu, Fang Yu, Feng Mao, Chuan Ma, Olav Rueppell, Jianke Li
Software Mentions: 1
Published: about 4 years ago

10.3390/biomedicines8080249

Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper
Cited by: 16
Author(s): Vladislav V. Babenko, Rustam H. Ziganshin, Christoph Weise, Igor A. Dyachenko, Elvira R. Shaykhutdinova, А. Н. Мурашев, Maxim N. Zhmak, Vladislav G. Starkov, Anh Hoang, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA118.000652

Doxorubicin-induced DNA Damage Causes Extensive Ubiquitination of Ribosomal Proteins Associated with a Decrease in Protein Translation*
Cited by: 25
Author(s): Vincentius A. Halim, Iraia García-Santisteban, Daniël O. Warmerdam, Bram van den Broek, Albert J. R. Heck, Shabaz Mohammed, René H. Medema
Software Mentions: 1
Published: almost 6 years ago

Projects: cran: Andromeda

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