cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-26343-2

Acrylamide acute neurotoxicity in adult zebrafish
Cited by: 56
Author(s): Melissa Faria, Tamar Ziv, Cristian Gómez‐Canela, Shani Ben-Lulu, Eva Prats, Karen Adriana Novoa-Luna, Arie Admon, Benjamı́n Piña, Romà Tauler, Leobardo Manuel Gómez-Oliván, Demetrio Raldúa
Software Mentions: 3
Published: over 8 years ago

10.1021/acs.jproteome.1c00243

Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance
Cited by: 12
Author(s): Tommaso De Marchi, Paul Theodor Pyl, Martin Sjöström, Stina Klasson, Hanna Sartor, Lena Tran, Gyula Pekár, Johan Malmström, Lars Malmström, Emma Niméus
Software Mentions: 3
Published: over 5 years ago

10.1098/rsob.160292

Structural, mechanistic and functional insight into gliotoxin bis -thiomethylation in Aspergillus fumigatus
Cited by: 32
Author(s): Stephen K. Dolan, Thomas Böck, Vanessa Hering, Rebecca A. Owens, Gary W. Jones, Wulf Blankenfeldt, Seán Doyle
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-018-30578-4

Snake Venom Extracellular vesicles (SVEVs) reveal wide molecular and functional proteome diversity
Cited by: 18
Author(s): Victor Corassolla Carregari, Lívia Rosa-Fernandes, Paulo A. Baldasso, Sérgio Paulo Bydlowski, Sérgio Marangoni, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-019-55053-6

Integrative proteomics and phosphoproteomics in pulmonary arterial hypertension
Cited by: 36
Author(s): Weiling Xu, Suzy Comhair, Ruoying Chen, Bo Hu, Yuan Hou, Yadi Zhou, Lori Mavrakis, Allison J. Janocha, Ling Li, Dongmei Zhang, Belinda Willard, Kewal Asosingh, Feixiong Cheng, Serpil C. Erzurum
Software Mentions: 3
Published: almost 7 years ago

10.1128/JVI.00805-17

Phosphorylation of Serine 225 in Hepatitis C Virus NS5A Regulates Protein-Protein Interactions
Cited by: 24
Author(s): Niluka Goonawardane, Anna Gebhardt, C. J. Bartlett, Andreas Pichlmair, Mark Harris
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-021-87955-9

Induced pluripotent stem cells from subjects with Lesch-Nyhan disease
Cited by: 5
Author(s): Diane Sutcliffe, Ashok R. Dinasarapu, Jasper E. Visser, Joery den Hoed, Fatemeh Seifar, Piyush Joshi, Irène Ceballos-Picot, Tejas Sardar, Ellen J. Hess, Yan V. Sun, Zhexing Wen, Michael E. Zwick, Hyder A. Jinnah
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-30587-3

A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes
Cited by: 2
Author(s): Brett W. Engelmann, Chiaowen Joyce Hsiao, John Blischak, Yannick Fourne, Zia Khan, Michael J. Ford, Yoav Gilad
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-19351-9

Visualization of human karyopherin beta-1/importin beta-1 interactions with protein partners in mitotic cells by co-immunoprecipitation and proximity ligation assays
Cited by: 13
Author(s): Laura Di Francesco, Annalisa Verrico, Italia Anna Asteriti, Paola Rovella, Pietro Cirigliano, Giulia Guarguaglini, Maria Eugenia Schininà, Patrizia Lavia
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: about 6 years ago

10.1186/s12967-016-0907-8

Cathepsin A inhibition attenuates myocardial infarction-induced heart failure on the functional and proteomic levels
Cited by: 20
Author(s): Agnese Petrera, Johann Gassenhuber, Sven Ruf, Deepika Gunasekaran, Jennifer S. Esser, Jasmin H. Shahinian, Thomas Hübschle, Hartmut Rütten, Thorsten Sadowski, Oliver Schilling
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-020-74288-2

Cell-free DNA in plasma as an essential immune system regulator
Cited by: 19
Author(s): Marie Korabečná, Alžběta Zinková, Iva Brynychova, Blanka Chylíková, Petr Přikryl, Lucie Šedová, Pavel Neužil, Ondřej Šeda
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-77535-8

Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model
Cited by: 11
Author(s): Federica Anastasi, Francesco Greco, Marialaura Dilillo, Eleonora Vannini, Valentina Cappello, Laura Baroncelli, Mario Costa, Mauro Gemmi, Matteo Caleo, Liam A. McDonnell
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-58740-x

Protein sorting into protein bodies during barley endosperm development is putatively regulated by cytoskeleton members, MVBs and the HvSNF7s
Cited by: 10
Author(s): Valentin Roustan, Julia Hilscher, Marieluise Weidinger, Siegfried Reipert, Azita Shabrangy, Claudia Gebert, Bianca Dietrich, Georgi Dermendjiev, Madeleine Schnurer, Pierre Jean Roustan, Eva Stöger, Verena Ibl
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59163-4

Chronic irradiation of human cells reduces histone levels and deregulates gene expression
Cited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-43154-1

An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation
Cited by: 26
Author(s): Karunakaran A. Kalesh, Saulius Lukauskas, Annabel Borg, Ambrosius P. Snijders, Vinay Ayyappan, Anthony K.L. Leung, Dorian O. Haskard, Peter A. DiMaggio
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-17756-6

Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds
Cited by: 50
Author(s): Xiaoxi Meng, Shihai Xing, Loida M. Perez, Xiaojun Peng, Zhao QingYong, Edilberto D. Redoña, Cailin Wang, Zhaohua Peng
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13287-018-0867-4

Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behavior
Cited by: 26
Author(s): Niketa Sareen, Glen Lester Sequiera, Rakesh Chaudhary, Ejlal Abu‐El‐Rub, Subir Roy Chowdhury, Vikram Sharma, Arun Surendran, Meenal Moudgil, Paul Fernyhough, Amir Ravandi, Sanjiv Dhingra
Software Mentions: 2
Published: over 8 years ago

10.1098/rsob.150230

Auxin/AID versus conventional knockouts: distinguishing the roles of CENP-T/W in mitotic kinetochore assembly and stability
Cited by: 20
Author(s): Laura Wood, Daniel G Booth, Giulia Vargiu, Sachio Ohta, Flávia de Lima Alves, Kumiko Samejima, Tatsuo Fukagawa, Juri Rappsilber, William C. Earnshaw
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-020-63926-4

A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells
Cited by: 12
Author(s): Sylvie Thuault, Claire Mamelonet, Joëlle Salameh, Kevin Ostacolo, Brice Chanez, Danièle Salaün, Emilie Baudelet, Stéphane Audebert, Luc Camoin, Ali Badache
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-50575-5

Changes in the microsomal proteome of tomato fruit during ripening
Cited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-42436-y

Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition
Cited by: 43
Author(s): James M. Njunge, Agnes Gwela, Nelson Kibinge, Moses Ngari, Lydia Nyamako, Emily Nyatichi, Johnstone Thitiri, Gerard Bryan Gonzales, Robert Bandsma, Judd L. Walson, Evelyn Gitau, James A. Berkley
Software Mentions: 2
Published: over 7 years ago

10.1186/s13395-020-00226-5

High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers
Cited by: 24
Author(s): Sebastian Kallabis, Lena Abraham, Stefan Müller, Verena Dzialas, Clara Türk, Janica L. Wiederstein, Theresa Bock, Hendrik Nolte, Leonardo Nogara, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-23505-0

Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection
Cited by: 22
Author(s): Patricia Jeannin, Thibault Chaze, Quentin Giai Gianetto, Mariette Matondo, Olivier Gout, Antoine Gessain, Philippe V. Afonso
Software Mentions: 2
Published: over 8 years ago

10.1186/s13023-021-01679-7

Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways
Cited by: 10
Author(s): Ayelet Vardi, Amir Pri-Or, Noa Wigoda, Yulia Grishchuk, Anthony H. Futerman
Software Mentions: 2
Published: over 5 years ago

10.1016/j.joca.2021.02.008

Circadian time series proteomics reveals daily dynamics in cartilage physiology
Cited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-018-19530-8

APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain shedding
Cited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-54618-9

Bacterial DNA induces the formation of heat-resistant disease-associated proteins in human plasma
Cited by: 9
Author(s): Victor Tetz, George Tetz
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-84274-x

Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds
Cited by: 1
Author(s): Eleni Voukali, Nithya Kuttiyarthu Veetil, Pavel Němec, Pavel Stopka, Michal Vinkler
Software Mentions: 2
Published: over 5 years ago

10.7150/thno.37623

Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimens
Cited by: 19
Author(s): Yuichi Abe, Hidekazu Hirano, Hirokazu Shoji, Asa Tada, Junko Isoyama, Akemi Kakudo, Daigo Gunji, Kazufumi Honda, Narikazu Boku, Jun Adachi, Takeshi Tomonaga
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-70393-4

The proteomic analysis of breast cell line exosomes reveals disease patterns and potential biomarkers
Cited by: 69
Author(s): Yousef Risha, Zoran Minić, Shahrokh M. Ghobadloo, Maxim V. Berezovski
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70541-w

Changes in the plasma microvesicle proteome during the ovarian hyperstimulation phase of assisted reproductive technology
Cited by: 1
Author(s): Nina Olausson, Fariborz Mobarrez, Roman A. Zubarev, Alexey Chernobrovkin, Dorothea Rutishauser, Katarina Bremme, Eli Westerlund, Outi Hovatta, Håkan Wallén, Peter Henriksson
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70565-2

Kinetic analysis of effects of temperature and time on the regulation of venom expression in Bungarus multicinctus
Cited by: 10
Author(s): Xiao Yin, Shuai Guo, Jihai Gao, Lu Luo, Xuejiao Liao, Mingqian Li, He Su, Zhixing Huang, Jiang Xu, Jin Pei, Shilin Chen
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.22413

Renal oncocytoma characterized by the defective complex I of the respiratory chain boosts the synthesis of the ROS scavenger glutathione
Cited by: 24
Author(s): Gerrit Kürschner, Qingzhou Zhang, Rosanna Clima, Yi Xiao, Jonas Busch, Ergin Kilic, Klaus Jung, Nikolaus Berndt, Sascha Bulik, Hermann‐Georg Holzhütter, Giuseppe Gasparre, Marcella Attimonelli, M. Madan Babu, David Meierhofer
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22176

ING5 differentially regulates protein lysine acetylation and promotes p300 autoacetylation
Cited by: 13
Author(s): Tao Zhang, Meng Ji, Xinli Liu, Xutao Zhang, Xiaojun Peng, Zhongyi Cheng, Feng Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-43328-x

ALK4/5-dependent TGF-β signaling contributes to the crosstalk between neurons and microglia following axonal lesion
Cited by: 8
Author(s): Antonella Raffo-Romero, Tanina Arab, Christelle Van Camp, Quentin Lemaire, Maxence Wisztorski, Julien Franck, Soulaimane Aboulouard, Françoise Le Marrec-Croq, Pierre-Éric Sautière, Jacopo Vizioli, Michel Salzet, Christophe Lefebvre
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.24047

Molecular characterization of breast cancer cell response to metabolic drugs
Cited by: 22
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Mariana Díaz-Almirón, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Hilario Navarro, Rosa Aras-López, Irene Dapía, Rocío López-Vacas, Paolo Nanni, Sara Llorente-Armijo, Pedro Arias, Alberto M. Borobia, Paloma Maı́n, Jaime Feliú, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-47829-7

Protein Complex Identification and quantitative complexome by CN-PAGE
Cited by: 22
Author(s): Michał Górka, Corné Swart, Beata Siemiątkowska, Silvia Martínez-Jaime, Aleksandra Skirycz, Sebastian Streb, Alexander Graf
Software Mentions: 2
Published: about 7 years ago

10.1016/j.str.2017.04.005

The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System
Cited by: 11
Author(s): Adrian C. D. Fuchs, Vikram Alva, Lorena Maldoner, R. Albrecht, M.D. Hartmann, Joerg Martin
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-018-25059-7

Trafficking, localization and degradation of the Na+,HCO3− co-transporter NBCn1 in kidney and breast epithelial cells
Cited by: 8
Author(s): Christina W. Olesen, Jens Vogensen, Ida Axholm, Marc Severin, Julie Schnipper, Isabella Skandorff Pedersen, Jakob Hjorth von Stemann, Jacob M. Schrøder, Dan Ploug Christensen, Stine Falsig Pedersen
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.635550

SP3 Protocol for Proteomic Plant Sample Preparation Prior LC-MS/MS
Cited by: 19
Author(s): Kamil Mikulášek, Hana Konečná, David Potěšil, Renata Holánková, Jan Havliš, Zbyněk Zdráhal
Software Mentions: 2
Published: over 5 years ago

10.1074/mcp.RA120.002273

Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism
Cited by: 7
Author(s): Niels Leijten, Petra A Bakker, Herman P. Spaink, Jeroen den Hertog, Simone Lemeer
Software Mentions: 2
Published: almost 6 years ago

10.3390/biom10111581

The Proteasome Activators Blm10/PA200 Enhance the Proteasomal Degradation of N-Terminal Huntingtin
Cited by: 7
Author(s): Azzam Aladdin, Yanhua Yao, Ciyu Yang, Günther Kahlert, Marvi Ghani, Nikolett Király, Anita Boratkó, Karen Uray, Gunnar Dittmar, Krisztina Tar
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2017.01669

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition
Cited by: 15
Author(s): Gene Hart‐Smith, Rodrigo S. Reis, Peter M. Waterhouse, Marc R. Wilkins
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2021.622795

Magnetic Field Induced Changes in the Shoot and Root Proteome of Barley (Hordeum vulgare L.)
Cited by: 7
Author(s): Azita Shabrangy, Arindam Ghatak, Shuang Zhang, Alfred Priller, Palak Chaturvedi
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: over 8 years ago

10.1074/mcp.RA118.000650

Proteomic Analysis of the Cell Cycle of Procylic Form Trypanosoma brucei
Cited by: 34
Author(s): Thomas W. M. Crozier, Michele Tinti, Richard J. Wheeler, Tony Ly, Michael A. J. Ferguson, Angus I. Lamond
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2020.00520

Inflammatory Drivers of Cardiovascular Disease: Molecular Characterization of Senescent Coronary Vascular Smooth Muscle Cells
Cited by: 19
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Meik Kunz, Xiaoyan Ke, Annette Just, Andreas Pich, Johann Bauersachs, Jan Fiedler, Daniel Sedding, Thomas Thum
Software Mentions: 2
Published: over 6 years ago

10.1074/mcp.RA118.001036

Comparative Secretome Analyses of Human and Zoonotic Staphylococcus aureus Isolates CC8, CC22, and CC398
Cited by: 25
Author(s): Tobias Busche, Mélanie Hillion, Vu Van Loi, David T. Berg, Birgit Walther, Torsten Semmler, Birgit Strommenger, Wolfgang Witte, Christiane Cuny, Alexander Mellmann, Mark A. Holmes, Jörn Kalinowski, Lorenz Adrian, Jörg Bernhardt, Haike Antelmann
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-14-906

The neuropeptide complement of the marine annelid Platynereis dumerilii
Cited by: 117
Author(s): Markus Conzelmann, Elizabeth A. Williams, Karsten Krug, Mirita Franz‐Wachtel, Boris Maček, Gáspár Jékely
Software Mentions: 2
Published: almost 14 years ago

10.3389/fpls.2020.00872

Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach
Cited by: 9
Author(s): Nima Ranjbar Sistani, Getinet Desalegn, Hans‐Peter Kaul, Stefanie Wienkoop
Software Mentions: 2
Published: over 6 years ago

10.3389/fnmol.2018.00345

S-palmitoylation Is Required for the Control of Growth Cone Morphology of DRG Neurons by CNP-Induced cGMP Signaling
Cited by: 13
Author(s): Alexandre Dumoulin, Alina Dagane, Gunnar Dittmar, Fritz G. Rathjen
Software Mentions: 2
Published: about 8 years ago

10.1002/advs.202004846

SPOP and OTUD7A Control EWS–FLI1 Protein Stability to Govern Ewing Sarcoma Growth
Cited by: 23
Author(s): Siyuan Su, Jianfeng Chen, Yao Jiang, Ying Wang, T. PanduRanga Vital, Jiaming Zhang, Christian Laggner, Kong T. Nguyen, Zhen-Gang Zhu, Alex W. Prevatte, Nelson W. Barker, Laura E. Herring, Ian J. Davis, Pengda Liu
Software Mentions: 2
Published: over 5 years ago

10.3389/fneur.2017.00110

Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus
Cited by: 22
Author(s): Cheng‐Kang Chiang, Bo Xu, Neel Mehta, Janice Mayne, Warren Sun, Kai Cheng, Zhibin Ning, Jing Dong, Hanfa Zou, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 2
Published: over 9 years ago

10.1074/mcp.O116.058438

Proteoform-Specific Insights into Cellular Proteome Regulation
Cited by: 3
Author(s): Emma L. Norris, Madeleine J. Headlam, Keyur A. Dave, David Smith, Alexander Bukreyev, Toshna Singh, Buddhika A. Jayakody, Keith J. Chappell, Peter L. Collins, Jeffrey J. Gorman
Software Mentions: 2
Published: about 10 years ago

10.1186/s12864-019-6344-3

Comparison of the molecular and cellular phenotypes of common mouse syngeneic models with human tumors
Cited by: 87
Author(s): Wenyan Zhong, Jeremy S. Myers, Fang Wang, Kai Wang, Justin Lucas, Edward Rosfjord, Judy Lucas, Andrea T. Hooper, Sharon Yang, Lu Anna Lemon, Magali Guffroy, Chad May, Jadwiga Bienkowska, Paul A. Rejto
Software Mentions: 2
Published: almost 7 years ago

10.3389/fnins.2019.00143

Cx43-Associated Secretome and Interactome Reveal Synergistic Mechanisms for Glioma Migration and MMP3 Activation
Cited by: 9
Author(s): Qurratulain Aftab, Marc Mesnil, Emmanuel Ojefua, Alisha Poole, Jenna Noordenbos, Pierre‐Olivier Strale, Chris Sitko, Caitlin Le, Nikolay Stoynov, Leonard J. Foster, Wun-Chey Sin, Christian C. Naus, Vincent C. Chen
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2018.01590

Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii
Cited by: 28
Author(s): Valentin Roustan, Wolfram Weckwerth
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2018.00775

Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm
Cited by: 12
Author(s): Azita Shabrangy, Valentin Roustan, Siegfried Reipert, Marieluise Weidinger, Pierre-Jean Roustan, Eva Stöger, Wolfram Weckwerth, Verena Ibl
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.594743

Systematic Analysis of Lysine Lactylation in the Plant Fungal Pathogen Botrytis cinerea
Cited by: 37
Author(s): Mingming Gao, Ning Zhang, Wenxing Liang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmolb.2021.659058

Phenotypic and Multi-Omics Characterization of Escherichia coli K-12 Adapted to Chlorhexidine Identifies the Role of MlaA and Other Cell Envelope Alterations Regulated by Stress Inducible Pathways in CHX Resistance
Cited by: 7
Author(s): Branden S. J. Gregorchuk, Shelby L Reimer, Kari A. C. Green, Nicola Helen Cartwright, Daniel R. Beniac, Shannon L Hiebert, Timothy F. Booth, Patrick Chong, Garrett Westmacott, George G. Zhanel, Denice C. Bay
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.00084

Novel Flp pilus biogenesis-dependent natural transformation
Cited by: 32
Author(s): Angel Angelov, Paul M. P. van Bergen, Florian Nadler, Philipp Hornburg, Antoni Lichev, Maria Übelacker, Fiona Pachl, Bernhard Küster, Wolfgang Liebl
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.1074/mcp.M115.056481

Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant
Cited by: 28
Author(s): Zhuo A. Chen, Lutz Fischer, Jürgen Cox, Juri Rappsilber
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2020.00209

Comparative Proteomics of Meat Spoilage Bacteria Predicts Drivers for Their Coexistence on Modified Atmosphere Packaged Meat
Cited by: 18
Author(s): Sandra Kolbeck, Christina Ludwig, Chen Meng, Maik Hilgarth, Rudi F. Vogel
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.02977

Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato
Cited by: 34
Author(s): Francisco J. de Lamo, Maria E. Constantin, David H. Fresno, Sjef Boeren, Martijn Rep, Frank L. W. Takken
Software Mentions: 2
Published: almost 8 years ago

10.3389/fnmol.2021.658339

Broad Influence of Mutant Ataxin-3 on the Proteome of the Adult Brain, Young Neurons, and Axons Reveals Central Molecular Processes and Biomarkers in SCA3/MJD Using Knock-In Mouse Model
Cited by: 7
Author(s): Kalina Wiatr, Łukasz Marczak, J. Pérot, Emmanuel Brouillet, Julien Flament, Maciej Figiel
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.00189

Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium
Cited by: 11
Author(s): Gal Kapach, Reut Nuri, Christiane Schmidt, Adi Danin, Shir Ferrera, Alon Savidor, Roman G. Gerlach, Yechiel Shai
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.02599

Low Concentrations of Vitamin C Reduce the Synthesis of Extracellular Polymers and Destabilize Bacterial Biofilms
Cited by: 61
Author(s): Santosh Pandit, Vaishnavi Ravikumar, Alyaa M. Abdel-Haleem, Abderahmane Derouiche, Venkata Raghavendra Subrahmanya Sar Mokkapati, Carina Sihlbom, Katsuhiko Mineta, Takashi Gojobori, Xin Gao, Fredrik Westerlund, Ivan Mijaković
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.03101

Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP
Cited by: 25
Author(s): Claudia Hirschfeld, Alejandro Gómez-Mejía, Jürgen Bartel, Christian Hentschker, Manfred Rohde, Sandra Maaß, Sven Hammerschmidt, Dörte Becher
Software Mentions: 2
Published: over 6 years ago

10.1111/apha.13496

Exercise‐dependent increases in protein synthesis are accompanied by chromatin modifications and increased MRTF‐SRF signalling
Cited by: 23
Author(s): Francesca Solagna, Leonardo Nogara, Kenneth A. Dyar, Franziska Greulich, Ashfaq Ali Mir, Clara Türk, Theresa Bock, Alessia Geremia, Martina Baraldo, Roberta Sartori, Jean Farup, N. Henriette Uhlenhaut, Kristian Vissing, Marcus Krüger, Bert Blaauw
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2020.564350

Global Proteomic Analysis of Lysine Crotonylation in the Plant Pathogen Botrytis cinerea
Cited by: 7
Author(s): Ning Zhang, Zhenzhou Yang, Wenxing Liang, Mengjie Liu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.00094

Combined Transcriptome and Proteome Analysis of RpoS Regulon Reveals Its Role in Spoilage Potential of Pseudomonas fluorescens
Cited by: 21
Author(s): Xiaoxiang Liu, Jun Xu, Junli Zhu, Peng Du, Aijun Sun
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.634366

The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress
Cited by: 3
Author(s): Saul Lema A, Marina Klemenčič, Franziska Völlmy, Maarten Altelaar, Christiane Funk
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.618566

Distinct Human Gut Microbial Taxonomic Signatures Uncovered With Different Sample Processing and Microbial Cell Disruption Methods for Metaproteomic Analysis
Cited by: 10
Author(s): Carmen García-Durán, Raquel Martínez-López, Inés Zapico, Enrique Pérez, Eduardo Romeu, Javier Arroyo, María Luisa Hernáez, Aida Pitarch, Lucía Monteoliva, Concha Gil
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-016-3432-5

Proteomics informed by transcriptomics for characterising active transposable elements and genome annotation in Aedes aegypti
Cited by: 52
Author(s): Kevin Maringer, Amjad Yousuf, Kate J Heesom, Jun Fan, David A. Lee, Ana Fernández-Sesma, Conrad Bessant, David A. Matthews, Andrew D. Davidson
Software Mentions: 2
Published: over 9 years ago

10.3389/fnmol.2021.623659

Targeted Quantification of Detergent-Insoluble RNA-Binding Proteins in Human Brain Reveals Stage and Disease Specific Co-aggregation in Alzheimer’s Disease
Cited by: 12
Author(s): Qi Guo, Eric B. Dammer, Maotian Zhou, Sean R. Kundinger, Marla Gearing, James J. Lah, Aĺlan I. Levey, Zhandong Liu, Nicholas T. Seyfried
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.643441

Comparative Analysis of Global Proteome and Lysine Acetylome Between Naive CD4+ T Cells and CD4+ T Follicular Helper Cells
Cited by: 2
Author(s): Ming Zhao, Sujie Jia, Xiaofei Gao, Hong Qiu, Ruifang Wu, Haijing Wu, Qianjin Lu
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.01981

Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference
Cited by: 7
Author(s): Fabio Marino, Aikaterini Semilietof, Justine Michaux, HuiSong Pak, George Coukos, Markus Müller, Michal Bassani-Sternberg
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2020.00033

Molecular Signatures of Neuroinflammation Induced by αSynuclein Aggregates in Microglial Cells
Cited by: 47
Author(s): Satyapriya Sarkar, Eric B. Dammer, Emir Malovic, Abby L. Olsen, Syed Ali Raza, Tianwen Gao, Hailian Xiao, Danielle Oliver, Duc M. Duong, Valerie Joers, Nicholas T. Seyfried, Meixiang Huang, Thomas Kukar, Malú G. Tansey, Anumantha G. Kanthasamy, Srikant Rangaraju
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2020.565484

Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs
Cited by: 8
Author(s): Tik Muk, Pingping Jiang, Allan Stensballe, Kerstin Skovgaard, Per Torp Sangild, Duc Ninh Nguyen
Software Mentions: 2
Published: about 6 years ago

10.1186/s12861-018-0177-1

Short term optical defocus perturbs normal developmental shifts in retina/RPE protein abundance
Cited by: 11
Author(s): Nina Riddell, Pierre Faou, Sheila G. Crewther
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2021.573266

Pneumolysin Is Responsible for Differential Gene Expression and Modifications in the Epigenetic Landscape of Primary Monocyte Derived Macrophages
Cited by: 5
Author(s): Joby Cole, Adrienn Angyal, Richard D. Emes, Tim Mitchell, Mark J. Dickman, David H. Dockrell
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.581070

Plasma Proteome Responses in Salmonid Fish Following Immunization
Cited by: 8
Author(s): Fiona K. Bakke, Milena Mira Monte, David Stead, Dwight R. Causey, Alex Douglas, Daniel J. Macqueen, Helen Dooley
Software Mentions: 2
Published: about 6 years ago

10.3389/fmed.2017.00159

Proteomics of Eosinophil Activation
Cited by: 6
Author(s): Deane F. Mosher, Emily M. Wilkerson, Keren B. Turton, Alexander S. Hebert, Joshua J. Coon
Software Mentions: 2
Published: about 9 years ago

10.1016/j.molcel.2016.11.001

A SUMO-Dependent Protein Network Regulates Chromosome Congression during Oocyte Meiosis
Cited by: 66
Author(s): Federico Pelisch, Triin Tammsalu, Bin Wang, Ellis Jaffray, Anton Gartner, Ronald T. Hay
Software Mentions: 2
Published: almost 10 years ago

10.3389/fgene.2020.551495

Systematic Identification of Hub Genes in Placenta Accreta Spectrum Based on Integrated Transcriptomic and Proteomic Analysis
Cited by: 5
Author(s): Bingnan Chen, Di Wang, Yue Bian, Jiapo Li, Tian Yang, Na Li, Chong Qiao
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2021.702359

PPE38-Secretion-Dependent Proteins of M. tuberculosis Alter NF-kB Signalling and Inflammatory Responses in Macrophages
Cited by: 3
Author(s): James Gallant, Tiaan Heunis, Caroline G. G. Beltran, Karin Schildermans, Sven C. M. Bruijns, Inge Mertens, Wilbert Bitter, Samantha L. Sampson
Software Mentions: 2
Published: over 5 years ago

10.1016/j.molcel.2019.08.005

Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence
Cited by: 189
Author(s): Hanlin Zhang, Ghada Alsaleh, Jack Feltham, Yizhe Sun, Gennaro Napolitano, Thomas Riffelmacher, P. David Charles, Lisa Frau, Philip Hublitz, Zhanru Yu, Shabaz Mohammed, Andrea Ballabio, Stefan Balabanov, Jane Mellor, Anna Katharina Simon
Software Mentions: 2
Published: about 7 years ago

10.1042/BCJ20200309

Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics
Cited by: 19
Author(s): Dominic P. Byrne, Christopher J. Clarke, Philip Brownridge, Anton Kalyuzhnyy, Simon Perkins, Amy E. Campbell, David Mason, Andrew R. Jones, Patrick A. Eyers
Software Mentions: 2
Published: over 6 years ago

10.1042/BCJ20200930

Development of a multiplexed targeted mass spectrometry assay for LRRK2-phosphorylated Rabs and Ser910/Ser935 biomarker sites
Cited by: 26
Author(s): Raja Sekhar Nirujogi, Francesca Tonelli, Matthew Taylor, Paweł Lis, Alexander Zimprich, Esther Sammler, Dario R. Alessi
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.616435

Multi-Omics Analysis of Diabetic Nephropathy Reveals Potential New Mechanisms and Drug Targets
Cited by: 16
Author(s): Qian Sha, Jinxiu Lyu, Meng Zhao, Haijuan Li, Mengzhe Guo, Qiang Sun
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.725612

The Binary Toxin of Clostridioides difficile Alters the Proteome and Phosphoproteome of HEp-2 Cells
Cited by: 8
Author(s): Florian Stieglitz, Ralf Gerhard, Andreas Pich
Software Mentions: 2
Published: about 5 years ago

10.3389/fncel.2021.662035

Integrative Cell Type-Specific Multi-Omics Approaches Reveal Impaired Programs of Glial Cell Differentiation in Mouse Culture Models of DM1
Cited by: 10
Author(s): Anchel González-Barriga, Louison Lallemant, Diana Mihaela Dincã, Sandra Bráz, Hélène Polvèche, Paul Magneron, Cédric Pionneau, Aline Huguet-Lachon, Jean‐Baptiste Claude, Cérina Chhuon, Ida Chiara Guerrera, Cyril F. Bourgeois, Didier Auboeuf, Geneviève Gourdon, Mário Gomes‐Pereira
Software Mentions: 2
Published: over 5 years ago

10.1186/s12943-018-0890-1

Proteogenomic characterization and comprehensive integrative genomic analysis of human colorectal cancer liver metastasis
Cited by: 56
Author(s): Yu‐Shui Ma, Tao Huang, Xiaoming Zhong, Hongwei Zhang, Xianling Cong, Hong Xu, Gai‐Xia Lu, Fei Yu, Sheng Xue, Zhongwei Lv, Da Fu
Software Mentions: 2
Published: about 8 years ago

Projects: cran: Andromeda

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