cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1021/acs.jproteome.1c00243

Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance
Cited by: 12
Author(s): Tommaso De Marchi, Paul Theodor Pyl, Martin Sjöström, Stina Klasson, Hanna Sartor, Lena Tran, Gyula Pekár, Johan Malmström, Lars Malmström, Emma Niméus
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-43512-z

Melanoma proteomics suggests functional differences related to mutational status
Cited by: 9
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, Claudia Fortes, María Ferrer-Gómez, Rocío López-Vacas, Verónica Parra Blanco, Iván Márquez-Rodas, Ainara Soria, Juan Ángel Fresno Vara, Enrique Espinosa
Software Mentions: 3
Published: about 7 years ago

10.7554/eLife.44423

Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons
Cited by: 26
Author(s): Disi An, Ryosuke Fujiki, Dylan E. Iannitelli, John W. Smerdon, Shuvadeep Maity, Matthew F. Rose, Alon Gelber, Elizabeth K. Wanaselja, Ilona Yagudayeva, Joun Y. Lee, Christine Vogel, Hynek Wichterle, Elizabeth C. Engle, Esteban O. Mazzoni
Software Mentions: 3
Published: about 7 years ago

10.1098/rsob.160292

Structural, mechanistic and functional insight into gliotoxin bis -thiomethylation in Aspergillus fumigatus
Cited by: 32
Author(s): Stephen K. Dolan, Thomas Böck, Vanessa Hering, Rebecca A. Owens, Gary W. Jones, Wulf Blankenfeldt, Seán Doyle
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2017.01961

Rhizobium Impacts on Seed Productivity, Quality, and Protection of Pisum sativum upon Disease Stress Caused by Didymella pinodes: Phenotypic, Proteomic, and Metabolomic Traits
Cited by: 37
Author(s): Nima Ranjbar Sistani, Hans‐Peter Kaul, Getinet Desalegn, Stefanie Wienkoop
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-26639-3

Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments
Cited by: 11
Author(s): Corné Swart, Silvia Martínez-Jaime, Michał Górka, Kerstin Zander, Alexander Graf
Software Mentions: 3
Published: about 8 years ago

10.1186/s13059-019-1799-8

Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency
Cited by: 43
Author(s): Taolan Zhao, Qing Huan, Jing Sun, Chunyan Liu, Xiuli Hou, Xiang Yu, Ian M. Silverman, Yi Zhang, Brian D. Gregory, Chunming Liu, Wenfeng Qian, Xiaofeng Cao
Software Mentions: 3
Published: almost 7 years ago

10.1107/S2052252519007668

Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder
Cited by: 10
Author(s): Jeong Kuk Park, Keon Young Kim, Yeo Won Sim, Young Dong Kim, Jin Kyun Kim, Cheol Lee, Jeongran Han, Chae Un Kim, J. Eugene Lee, SangYoun Park
Software Mentions: 3
Published: almost 7 years ago

10.1128/mSphere.00476-20

Characterization of Extracellular Vesicles Produced by Aspergillus fumigatus Protoplasts
Cited by: 41
Author(s): Juliana Rizzo, Thibault Chaze, Kildare Miranda, Robert W. Roberson, Olivier Gorgette, Leonardo Nimrichter, Mariette Matondo, Jean Paul Latgé, Anne Beauvais, Márcio L. Rodrigues
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-017-17756-6

Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds
Cited by: 50
Author(s): Xiaoxi Meng, Shihai Xing, Loida M. Perez, Xiaojun Peng, Zhao QingYong, Edilberto D. Redoña, Cailin Wang, Zhaohua Peng
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.716114

Quantitative Proteomics and Relative Enzymatic Activities Reveal Different Mechanisms in Two Peanut Cultivars (Arachis hypogaea L.) Under Waterlogging Conditions
Cited by: 5
Author(s): Dengwang Liu, Jicheng Zhan, Zinan Luo, Ningbo Zeng, Wei Zhang, Hao Zhang, Li Lin
Software Mentions: 2
Published: almost 5 years ago

10.1242/jcs.257188

Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection
Cited by: 17
Author(s): Elayanambi Sundaramoorthy, Andrew P Ryan, Amit Fulzele, Marilyn Leonard, Matthew D. Daugherty, Eric J. Bennett
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.M115.645283

Organization of Subunits in the Membrane Domain of the Bovine F-ATPase Revealed by Covalent Cross-linking
Cited by: 38
Author(s): Jennifer Lee, Shuzhe Ding, Thomas B Walpole, Andrew N Holding, M.G. Montgomery, Ian M. Fearnley, John E. Walker
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.700930

The Rab-binding Profiles of Bacterial Virulence Factors during Infection
Cited by: 12
Author(s): Ernest C. So, Gunnar N. Schroeder, Danielle Carson, Corinna Mattheis, Aurélie Mousnier, Malgorzata Broncel, Edward W. Tate, Gad Frankel
Software Mentions: 2
Published: over 10 years ago

10.1128/mBio.03171-19

Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection
Cited by: 20
Author(s): Frédéric A. Carvalho, Anna Spier, Thibault Chaze, Mariette Matondo, Pascale Cossart, Fabrizia Stavru
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-42436-y

Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition
Cited by: 43
Author(s): James M. Njunge, Agnes Gwela, Nelson Kibinge, Moses Ngari, Lydia Nyamako, Emily Nyatichi, Johnstone Thitiri, Gerard Bryan Gonzales, Robert Bandsma, Judd L. Walson, Evelyn Gitau, James A. Berkley
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1004623

Characterization of the Mycobacterial Acyl-CoA Carboxylase Holo Complexes Reveals Their Functional Expansion into Amino Acid Catabolism
Cited by: 17
Author(s): M.T. Ehebauer, Michael Zimmermann, Arjen J. Jakobi, Elke E. Noens, Daniel Laubitz, B. Cichocki, Hédia Marrakchi, Marie‐Antoinette Lanéelle, Mamadou Daffé, Carsten Sachse, Andrzej Dziembowski, Uwe Sauer, Matthias Wilmanns
Software Mentions: 2
Published: over 11 years ago

10.1128/mBio.03649-20

Whole-Genome Transformation Promotes tRNA Anticodon Suppressor Mutations under Stress
Cited by: 2
Author(s): Quinten Deparis, Jorge Duitama, María R. Foulquié-Moreno, Johan M. Thevelein
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-43154-1

An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation
Cited by: 26
Author(s): Karunakaran A. Kalesh, Saulius Lukauskas, Annabel Borg, Ambrosius P. Snijders, Vinay Ayyappan, Anthony K.L. Leung, Dorian O. Haskard, Peter A. DiMaggio
Software Mentions: 2
Published: about 7 years ago

10.1128/mBio.00262-21

The Breadth and Molecular Basis of Hcp-Driven Type VI Secretion System Effector Delivery
Cited by: 15
Author(s): Sophie A. Howard, R. Christopher D. Furniss, Dora Bonini, Himani Amin, Patricia Paracuellos, David Zlotkin, Tiago Costa, Asaf Levy, Despoina A. I. Mavridou, Alain Filloux
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-43328-x

ALK4/5-dependent TGF-β signaling contributes to the crosstalk between neurons and microglia following axonal lesion
Cited by: 8
Author(s): Antonella Raffo-Romero, Tanina Arab, Christelle Van Camp, Quentin Lemaire, Maxence Wisztorski, Julien Franck, Soulaimane Aboulouard, Françoise Le Marrec-Croq, Pierre-Éric Sautière, Jacopo Vizioli, Michel Salzet, Christophe Lefebvre
Software Mentions: 2
Published: about 7 years ago

10.1128/mSphere.00792-20

Phosphorylation of Toxoplasma gondii Secreted Proteins during Acute and Chronic Stages of Infection
Cited by: 6
Author(s): Joanna C. Young, Malgorzata Broncel, Helena Teague, Mark Russell, Olivia L. McGovern, Matthew J. Renshaw, David Frith, Ambrosius P. Snijders, Lucy Collinson, Vern B. Carruthers, Sarah E. Ewald, Moritz Treeck
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-47829-7

Protein Complex Identification and quantitative complexome by CN-PAGE
Cited by: 22
Author(s): Michał Górka, Corné Swart, Beata Siemiątkowska, Silvia Martínez-Jaime, Aleksandra Skirycz, Sebastian Streb, Alexander Graf
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1004835

Conserved Streptococcus pneumoniae Spirosomes Suggest a Single Type of Transformation Pilus in Competence
Cited by: 26
Author(s): Raphaël Laurenceau, Petya V. Krasteva, Amy Diallo, Sahra Ouarti, Magalie Duchateau, Christian Malosse, Julia Chamot‐Rooke, Rémi Fronzes
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.RA118.003351

PROMIS, global analysis of PROtein–metabolite interactions using size separation in Arabidopsis thaliana
Cited by: 49
Author(s): Daniel Veyel, Ewelina Sokołowska, Juan C. Moreno, Sylwia Kierszniowska, Justyna Cichon, Izabela Wojciechowska, Marcin Luzarowski, Monika Kosmacz, Jagoda Szlachetko, Michał Górka, Michaël Méret, Alexander Graf, Etienne H. Meyer, Lothar Willmitzer
Software Mentions: 2
Published: almost 8 years ago

10.1128/mSystems.00833-20

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage
Cited by: 10
Author(s): Patrick J. Willems, Igor Fijałkowski, Petra Van Damme
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00089-21

Quantitative Proteomics Reveals that Hsp90 Inhibition Dynamically Regulates Global Protein Synthesis in Leishmania mexicana
Cited by: 7
Author(s): Karunakaran A. Kalesh, Sandeep Sundriyal, Hirunika Perera, Steven L. Cobb, Paul W. Denny
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00500-21

Surface-Shaving Proteomics of Mycobacterium marinum Identifies Biofilm Subtype-Specific Changes Affecting Virulence, Tolerance, and Persistence
Cited by: 6
Author(s): Kirsi Savijoki, Henna Myllymäki, Hanna Luukinen, Lauri Paulamäki, Leena-Maija Vanha-aho, Aleksandra Svorjova, Ilkka T. Miettinen, Adyary Fallarero, Teemu O. Ihalainen, Jari Yli‐Kauhaluoma, Tuula A. Nyman, Mataleena Parikka
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-50575-5

Changes in the microsomal proteome of tomato fruit during ripening
Cited by: 17
Author(s): Daniela Pontiggia, Francesco Spinelli, Claudia Fabbri, Valerio Licursi, Rodolfo Negri, Giulia De Lorenzo, Benedetta Mattei
Software Mentions: 2
Published: over 6 years ago

10.1186/s13059-018-1533-y

Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence
Cited by: 70
Author(s): Yue Lu, Qiutao Xu, Yuan Liu, Yue Yu, Zhongyi Cheng, Yu Zhao, Dao‐Xiu Zhou
Software Mentions: 2
Published: over 7 years ago

10.1186/s13046-017-0581-6

Annexin A2 could enhance multidrug resistance by regulating NF-κB signaling pathway in pediatric neuroblastoma
Cited by: 31
Author(s): Yi Wang, Kai Chen, Yong Cai, Yuanxia Cai, Xiaojun Yuan, Lifeng Wang, Zhixiang Wu
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-54618-9

Bacterial DNA induces the formation of heat-resistant disease-associated proteins in human plasma
Cited by: 9
Author(s): Victor Tetz, George Tetz
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58740-x

Protein sorting into protein bodies during barley endosperm development is putatively regulated by cytoskeleton members, MVBs and the HvSNF7s
Cited by: 10
Author(s): Valentin Roustan, Julia Hilscher, Marieluise Weidinger, Siegfried Reipert, Azita Shabrangy, Claudia Gebert, Bianca Dietrich, Georgi Dermendjiev, Madeleine Schnurer, Pierre Jean Roustan, Eva Stöger, Verena Ibl
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59163-4

Chronic irradiation of human cells reduces histone levels and deregulates gene expression
Cited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59412-6

Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Cited by: 6
Author(s): Yvonne Mullins, Kate Keogh, David A. Kenny, A. K. Kelly, Padraig O’ Boyle, Sinéad M. Waters
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA120.015468

PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actin
Cited by: 16
Author(s): Rasmus Ree, L. A. P. De Kind, Anna Kaziales, Sylvia Varland, Minglu Dai, Klaus Richter, Adrian Drazic, Thomas Arnesen
Software Mentions: 2
Published: over 5 years ago

10.1002/jev2.12122

Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions
Cited by: 21
Author(s): Glenn Vergauwen, Joeri Tulkens, Cláudio Pinheiro, Francisco Avila Cobos, Sándor Dedeyne, Marie‐Angélique De Scheerder, Linos Vandekerckhove, Francis Impens, Ilkka Miinalainen, Geert Braems, Kris Gevaert, Pieter Mestdagh, Jo Vandesompele, Hannelore Denys, Olivier De Wever, An Hendrix
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1006980

Viral targeting of TFIIB impairs de novo polymerase II recruitment and affects antiviral immunity
Cited by: 13
Author(s): Darya A. Haas, Arno Meiler, Katharina Geiger, Carola Vogt, Ellen Preuß, Georg Kochs, Andreas Pichlmair
Software Mentions: 2
Published: about 8 years ago

10.3390/jof6040360

Examining the Impacts of CO2 Concentration and Genetic Compatibility on Perennial Ryegrass—Epichloë festucae var lolii Interactions
Cited by: 7
Author(s): Jennifer Geddes‐McAlister, Arjun Sukumaran, Aurora Patchett, Heather A. Hager, Jenna C. M. Dale, Jennifer L. Roloson, Nicholas Prudhomme, Kim A. Bolton, Benjamin Muselius, Jacqueline E. Powers, Jonathan A. Newman
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-63926-4

A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells
Cited by: 12
Author(s): Sylvie Thuault, Claire Mamelonet, Joëlle Salameh, Kevin Ostacolo, Brice Chanez, Danièle Salaün, Emilie Baudelet, Stéphane Audebert, Luc Camoin, Ali Badache
Software Mentions: 2
Published: about 6 years ago

10.1007/s00535-021-01802-2

Alteration of protein expression and spliceosome pathway activity during Barrett’s carcinogenesis
Cited by: 1
Author(s): Christoph Stingl, Angela Bureo Gonzalez, Coşkun Güzel, Kai Yi N. Phoa, Michail Doukas, Gerben E. Breimer, Sybren L. Meijer, Jacques Bergman, Theo M. Luider
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.ijms.2015.07.029

Evaluating the use of HILIC in large-scale, multi dimensional proteomics: Horses for courses?
Cited by: 8
Author(s): Dalila Bensaddek, Armel Nicolas
Software Mentions: 2
Published: over 10 years ago

10.1016/j.ijmm.2015.12.003

Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations
Cited by: 17
Author(s): Luana Maggiore, Lu Yu, Ulrich Omasits, Omar Rossi, Gordon Dougan, Nicholas R. Thomson, Allan Saul, Jyoti S. Choudhary, Christiane Gerke
Software Mentions: 2
Published: over 10 years ago

10.1155/2018/3982942

Proteomic Identification of Heat Shock-Induced Danger Signals in a Melanoma Cell Lysate Used in Dendritic Cell-Based Cancer Immunotherapy
Cited by: 7
Author(s): Fermín E. González, Alexey Chernobrovkin, Carlos Pereda, Tamara García-Salum, Andrés Tittarelli, Mercedes López, Flavio Salazar‐Onfray, Roman A. Zubarev
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: almost 6 years ago

10.1530/JME-17-0036

Serum estradiol levels in controlled ovarian stimulation directly affect the endometrium
Cited by: 34
Author(s): Kalim Ullah, Tanzil Ur Rahman, Hai Tao Pan, Meng Guo, Xin Yan Dong, Juan Liu, Lu Jin, Yi Cheng, Ke Zhang, Jun Ren, Xian-Hua Lin, Xiao Xiao Qiu, Ting Ting Wang, He‐Feng Huang, Jian‐Zhong Sheng
Software Mentions: 2
Published: almost 9 years ago

10.1007/s00109-017-1582-9

A map of human circular RNAs in clinically relevant tissues
Cited by: 253
Author(s): Philipp G. Maass, Petar Glažar, Sebastian Memczak, Gunnar Dittmar, Irene Hollfinger, Luisa Schreyer, Aisha V. Sauer, Okan Toka, Alessandro Aiuti, Friedrich C. Luft, Nikolaus Rajewsky
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-70393-4

The proteomic analysis of breast cell line exosomes reveals disease patterns and potential biomarkers
Cited by: 69
Author(s): Yousef Risha, Zoran Minić, Shahrokh M. Ghobadloo, Maxim V. Berezovski
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70541-w

Changes in the plasma microvesicle proteome during the ovarian hyperstimulation phase of assisted reproductive technology
Cited by: 1
Author(s): Nina Olausson, Fariborz Mobarrez, Roman A. Zubarev, Alexey Chernobrovkin, Dorothea Rutishauser, Katarina Bremme, Eli Westerlund, Outi Hovatta, Håkan Wallén, Peter Henriksson
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-70565-2

Kinetic analysis of effects of temperature and time on the regulation of venom expression in Bungarus multicinctus
Cited by: 10
Author(s): Xiao Yin, Shuai Guo, Jihai Gao, Lu Luo, Xuejiao Liao, Mingqian Li, He Su, Zhixing Huang, Jiang Xu, Jin Pei, Shilin Chen
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008129

Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionally
Cited by: 31
Author(s): Corinna Benz, Michael D. Urbaniak
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1008822

Shigella hijacks the exocyst to cluster macropinosomes for efficient vacuolar escape
Cited by: 20
Author(s): Yuen-Yan Chang, Virginie Stévenin, Magalie Duchateau, Quentin Giai Gianetto, Véronique Hourdel, Cristina S. Rodrigues, Mariette Matondo, Norbert Reiling, Jost Enninga
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.50416

PPM1H phosphatase counteracts LRRK2 signaling by selectively dephosphorylating Rab proteins
Cited by: 85
Author(s): Kerryn Berndsen, Paweł Lis, Wondwossen M Yeshaw, Paulina S. Wawro, Raja Sekhar Nirujogi, Melanie Wightman, Thomas Macartney, Mark Dorward, Axel Knebel, Francesca Tonelli, Suzanne R Pfeffer, Dario R. Alessi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-74288-2

Cell-free DNA in plasma as an essential immune system regulator
Cited by: 19
Author(s): Marie Korabečná, Alžběta Zinková, Iva Brynychova, Blanka Chylíková, Petr Přikryl, Lucie Šedová, Pavel Neužil, Ondřej Šeda
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-77535-8

Proteomics analysis of serum small extracellular vesicles for the longitudinal study of a glioblastoma multiforme mouse model
Cited by: 11
Author(s): Federica Anastasi, Francesco Greco, Marialaura Dilillo, Eleonora Vannini, Valentina Cappello, Laura Baroncelli, Mario Costa, Mauro Gemmi, Matteo Caleo, Liam A. McDonnell
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.27356

A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis
Cited by: 43
Author(s): Ajay Mishra, Bénédicte Oulès, Angela Oliveira Pisco, Tony Ly, Kifayathullah Liakath‐Ali, Gernot Walko, Priyalakshmi Viswanathan, Matthieu Tihy, Jagdeesh Nijjher, Sara-Jane Dunn, Angus I. Lamond, Fiona M. Watt
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.58288

The host exosome pathway underpins biogenesis of the human cytomegalovirus virion
Cited by: 23
Author(s): Declan L. Turner, Denis V. Korneev, John Purdy, Alex de Marco, Rommel A. Mathias
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2018.00775

Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm
Cited by: 12
Author(s): Azita Shabrangy, Valentin Roustan, Siegfried Reipert, Marieluise Weidinger, Pierre-Jean Roustan, Eva Stöger, Wolfram Weckwerth, Verena Ibl
Software Mentions: 2
Published: about 8 years ago

10.1002/jcsm.12496

Skeletal muscle mTORC1 regulates neuromuscular junction stability
Cited by: 38
Author(s): Martina Baraldo, Alessia Geremia, Marco Pirazzini, Leonardo Nogara, Francesca Solagna, Clara Türk, Hendrik Nolte, Vanina Romanello, Aram Megighian, Simona Boncompagni, Marcus Krüger, Marco Sandri, Bert Blaauw
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.45916

In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation
Cited by: 60
Author(s): Alison K. Gillingham, Jessie Bertram, Farida Begum, Sean Munro
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.45863

Endothelial EphB4 maintains vascular integrity and transport function in adult heart
Cited by: 29
Author(s): Guillermo Luxán, Jonas Stewen, Noèlia Díaz, Katsuhiro Kato, Sathish Kumar Maney, Anusha Aravamudhan, Frank Berkenfeld, Nina Nagelmann, Hannes C.A. Drexler, Dagmar Zeuschner, Cornelius Faber, Hermann Schillers, Sven Hermann, John Wiseman, Juan M. Vaquerizas, Mara E. Pitulescu, Ralf H. Adams
Software Mentions: 2
Published: over 6 years ago

10.1172/jci.insight.143474

Identification of Wee1 as a target in combination with avapritinib for gastrointestinal stromal tumor treatment
Cited by: 5
Author(s): Shuai Ye, Dinara Sharipova, Marya Kozinova, Lilli Klug, Jimson D’Souza, Martin G. Belinsky, Katherine J. Johnson, Margret B. Einarson, Karthik Devarajan, Yan Zhou, Samuel Litwin, Michael C. Heinrich, Ronald P. DeMatteo, Margaret von Mehren, James S. Duncan, Lori Rink
Software Mentions: 2
Published: over 5 years ago

10.1016/j.gpb.2020.06.012

Screening of Potential Biomarkers for Gastric Cancer with Diagnostic Value Using Label-free Global Proteome Analysis
Cited by: 12
Author(s): Yongxi Song, Jun Wang, Jingwei Sun, Xiaowan Chen, Jinxin Shi, Zhonghua Wu, Dehao Yu, Fei Zhang, Zhenning Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84274-x

Comparison of plasma and cerebrospinal fluid proteomes identifies gene products guiding adult neurogenesis and neural differentiation in birds
Cited by: 1
Author(s): Eleni Voukali, Nithya Kuttiyarthu Veetil, Pavel Němec, Pavel Stopka, Michal Vinkler
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.67275

Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila
Cited by: 10
Author(s): Luke S Tain, Robert Sehlke, Ralf Leslie Meilenbrock, Thomas Leech, Jonathan Paulitz, Manopriya Chokkalingam, Nagarjuna Nagaraj, Sebastian Grönke, Jenny Fröhlich, Ilian Atanassov, Matthias Mann, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-19530-8

APLP1 is endoproteolytically cleaved by γ-secretase without previous ectodomain shedding
Cited by: 22
Author(s): Linda Schauenburg, Filip Liebsch, Murat Eravci, Magnus C. Mayer, Christoph Weise, Gerhard Multhaup
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.34202

Local and global influences on protein turnover in neurons and glia
Cited by: 154
Author(s): Aline Ricarda Dörrbaum, Lisa Kochen, Julian D. Langer, Erin M. Schuman
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.41608

In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta
Cited by: 48
Author(s): Maria Pernemalm, AnnSofi Sandberg, Yong Zhu, Jorrit Boekel, Davide Tamburro, Jochen M. Schwenk, Albin Björk, Marie Wahren‐Herlenius, Hanna Åmark, Claes‐Göran Östenson, Magnus Westgren, Janne Lehtiö
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.03895

Drep-2 is a novel synaptic protein important for learning and memory
Cited by: 38
Author(s): Till F. M. Andlauer, Sabrina Scholz-Kornehl, Rui Tian, Marieluise Kirchner, Husam Babikir, Harald Depner, Bernhard Loll, Christine Quentin, Varun Gupta, Matthew Holt, Shubham Dipt, Michael Cressy, Markus C. Wahl, André Fiala, Matthias Selbach, Martin Schwärzel, Stephan J. Sigrist
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.67437

Quantitative mapping of human hair greying and reversal in relation to life stress
Cited by: 24
Author(s): A Rosenberg, Shannon Rausser, Junting Ren, Eugene V. Mosharov, Gabriel Sturm, R. Todd Ogden, Purvi Patel, Rajesh Kumar Soni, Clay Lacefield, Desmond J. Tobin, Ralf Paus, Martin Picard
Software Mentions: 2
Published: almost 5 years ago

10.1083/jcb.201802151

Xrp1 genetically interacts with the ALS-associated FUS orthologue caz and mediates its toxicity
Cited by: 20
Author(s): Moushami Mallik, Marica Catinozzi, Clemens Hug, Li Zhang, Marina Wagner, Julia Bussmann, Jonas Bittern, Sina Mersmann, Christian Klämbt, Hannes C.A. Drexler, Martijn Huynen, Juan M. Vaquerizas, Erik Storkebaum
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.22413

Renal oncocytoma characterized by the defective complex I of the respiratory chain boosts the synthesis of the ROS scavenger glutathione
Cited by: 24
Author(s): Gerrit Kürschner, Qingzhou Zhang, Rosanna Clima, Yi Xiao, Jonas Busch, Ergin Kilic, Klaus Jung, Nikolaus Berndt, Sascha Bulik, Hermann‐Georg Holzhütter, Giuseppe Gasparre, Marcella Attimonelli, M. Madan Babu, David Meierhofer
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.22176

ING5 differentially regulates protein lysine acetylation and promotes p300 autoacetylation
Cited by: 13
Author(s): Tao Zhang, Meng Ji, Xinli Liu, Xutao Zhang, Xiaojun Peng, Zhongyi Cheng, Feng Zhang
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.24047

Molecular characterization of breast cancer cell response to metabolic drugs
Cited by: 22
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Mariana Díaz-Almirón, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Hilario Navarro, Rosa Aras-López, Irene Dapía, Rocío López-Vacas, Paolo Nanni, Sara Llorente-Armijo, Pedro Arias, Alberto M. Borobia, Paloma Maı́n, Jaime Feliú, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-018-25059-7

Trafficking, localization and degradation of the Na+,HCO3− co-transporter NBCn1 in kidney and breast epithelial cells
Cited by: 8
Author(s): Christina W. Olesen, Jens Vogensen, Ida Axholm, Marc Severin, Julie Schnipper, Isabella Skandorff Pedersen, Jakob Hjorth von Stemann, Jacob M. Schrøder, Dan Ploug Christensen, Stine Falsig Pedersen
Software Mentions: 2
Published: about 8 years ago

10.1111/jcmm.12407

Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells
Cited by: 27
Author(s): Quan Zhou, Yueshuai Guo, Bo Zheng, Binbin Shao, Min Jiang, Gaigai Wang, Tao Zhou, Lei Wang, Zuomin Zhou, Xuejiang Guo, Xiaoyan Huang
Software Mentions: 2
Published: over 11 years ago

10.1186/s13395-020-00226-5

High-throughput proteomics fiber typing (ProFiT) for comprehensive characterization of single skeletal muscle fibers
Cited by: 24
Author(s): Sebastian Kallabis, Lena Abraham, Stefan Müller, Verena Dzialas, Clara Türk, Janica L. Wiederstein, Theresa Bock, Hendrik Nolte, Leonardo Nogara, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 2
Published: about 6 years ago

10.1002/glia.24032

Regulation of aquaporin‐4 expression in the central nervous system investigated using M23‐AQP4 null mouse
Cited by: 10
Author(s): Francesco Pisani, Laura Simone, Maria Grazia Mola, Manuela De Bellis, Antonio Frigeri, Grazia Paola Nicchia, María Svelto
Software Mentions: 2
Published: about 5 years ago

10.1186/s13287-018-0867-4

Early passaging of mesenchymal stem cells does not instigate significant modifications in their immunological behavior
Cited by: 26
Author(s): Niketa Sareen, Glen Lester Sequiera, Rakesh Chaudhary, Ejlal Abu‐El‐Rub, Subir Roy Chowdhury, Vikram Sharma, Arun Surendran, Meenal Moudgil, Paul Fernyhough, Amir Ravandi, Sanjiv Dhingra
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-23505-0

Proteomic analysis of plasma extracellular vesicles reveals mitochondrial stress upon HTLV-1 infection
Cited by: 22
Author(s): Patricia Jeannin, Thibault Chaze, Quentin Giai Gianetto, Mariette Matondo, Olivier Gout, Antoine Gessain, Philippe V. Afonso
Software Mentions: 2
Published: about 8 years ago

10.1098/rsob.150230

Auxin/AID versus conventional knockouts: distinguishing the roles of CENP-T/W in mitotic kinetochore assembly and stability
Cited by: 20
Author(s): Laura Wood, Daniel G Booth, Giulia Vargiu, Sachio Ohta, Flávia de Lima Alves, Kumiko Samejima, Tatsuo Fukagawa, Juri Rappsilber, William C. Earnshaw
Software Mentions: 2
Published: over 10 years ago

10.1242/jcs.154880

Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophages
Cited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: over 12 years ago

10.3389/fpls.2020.625507

Transcriptomic and Proteomic Analyses of Nepenthes ampullaria and Nepenthes rafflesiana Reveal Parental Molecular Expression in the Pitchers of Their Hybrid, Nepenthes × hookeriana
Cited by: 11
Author(s): Muhammad Mu′izzuddin Zulkapli, Nur Syatila Ab Ghani, Tiew Yik Ting, Wan Mohd Aizat, Hoe-Han Goh
Software Mentions: 2
Published: over 5 years ago

10.1186/s13023-021-01679-7

Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways
Cited by: 10
Author(s): Ayelet Vardi, Amir Pri-Or, Noa Wigoda, Yulia Grishchuk, Anthony H. Futerman
Software Mentions: 2
Published: over 5 years ago

10.1016/j.joca.2021.02.008

Circadian time series proteomics reveals daily dynamics in cartilage physiology
Cited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: about 5 years ago

10.1109/ACCESS.2020.3047588

Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey
Cited by: 12
Author(s): Muhammad Usman Tariq, Muhammad Haseeb, Mohammed Aledhari, Rehma Razzak, Reza M. Parizi, Fahad Saeed
Software Mentions: 2
Published: over 5 years ago

10.1016/j.str.2017.04.005

The Architecture of the Anbu Complex Reflects an Evolutionary Intermediate at the Origin of the Proteasome System
Cited by: 11
Author(s): Adrian C. D. Fuchs, Vikram Alva, Lorena Maldoner, R. Albrecht, M.D. Hartmann, Joerg Martin
Software Mentions: 2
Published: about 9 years ago

10.1016/j.immuni.2017.11.016

Oncogenic RAS Signaling Promotes Tumor Immunoresistance by Stabilizing PD-L1 mRNA
Cited by: 416
Author(s): Matthew A. Coelho, Sophie de Carné Trécesson, Sareena Rana, Davide Zecchin, Christopher Moore, Míriam Molina‐Arcas, Philip East, Bradley Spencer‐Dene, Emma Nye, Karin Barnouin, Ambrosius P. Snijders, Wi S. Lai, Perry J. Blackshear, Julian Downward
Software Mentions: 2
Published: over 8 years ago

10.7150/thno.37623

Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimens
Cited by: 19
Author(s): Yuichi Abe, Hidekazu Hirano, Hirokazu Shoji, Asa Tada, Junko Isoyama, Akemi Kakudo, Daigo Gunji, Kazufumi Honda, Narikazu Boku, Jun Adachi, Takeshi Tomonaga
Software Mentions: 2
Published: over 6 years ago

10.1186/s12967-016-0907-8

Cathepsin A inhibition attenuates myocardial infarction-induced heart failure on the functional and proteomic levels
Cited by: 20
Author(s): Agnese Petrera, Johann Gassenhuber, Sven Ruf, Deepika Gunasekaran, Jennifer S. Esser, Jasmin H. Shahinian, Thomas Hübschle, Hartmut Rütten, Thorsten Sadowski, Oliver Schilling
Software Mentions: 2
Published: about 10 years ago

10.3390/toxins8040105

Quantitative Proteomic Analysis of Venoms from Russian Vipers of Pelias Group: Phospholipases A2 are the Main Venom Components
Cited by: 29
Author(s): Sergey I. Kovalchuk, Rustam H. Ziganshin, Vladislav G. Starkov, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2021.635550

SP3 Protocol for Proteomic Plant Sample Preparation Prior LC-MS/MS
Cited by: 19
Author(s): Kamil Mikulášek, Hana Konečná, David Potěšil, Renata Holánková, Jan Havliš, Zbyněk Zdráhal
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009580

A Ran-binding protein facilitates nuclear import of human papillomavirus type 16
Cited by: 10
Author(s): Kun-Yi Lai, Matteo Rizzato, Inci Aydin, Ruth Villalonga-Planells, Hannes C.A. Drexler, Mario Schelhaas
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1008841

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase
Cited by: 13
Author(s): Anthony R. Dawson, Gary Wilson, Elyse C. Freiberger, Arindam Mondal, Joshua J. Coon, Andrew Mehle
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1009326

The pentose phosphate pathway constitutes a major metabolic hub in pathogenic Francisella
Cited by: 13
Author(s): Héloïse Rytter, Anne Jamet, Jason Ziveri, Elodie Ramond, Mathieu Coureuil, Pauline Lagouge-Roussey, Daniel Euphrasie, Fabiola Tros, Nicolas Goudin, Cérina Chhuon, Ivan Nemazanyy, Fabrício Edgar de Moraes, Carlos Alberto Labate, Ida Chiara Guerrera, Alain Charbit
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2017.01669

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition
Cited by: 15
Author(s): Gene Hart‐Smith, Rodrigo S. Reis, Peter M. Waterhouse, Marc R. Wilkins
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: almost 11 years ago

Projects: cran: Andromeda

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