cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/ijms20010016

Clinically Relevant Post-Translational Modification Analyses—Maturing Workflows and Bioinformatics Tools
Cited by: 34
Author(s): Dana Pascovici, Jemma X. Wu, Matthew J. McKay, Chitra Joseph, Zainab Noor, Karthik Shantharam Kamath, Yunqi Wu, Shoba Ranganathan, Vivek Gupta, Mehdi Mirzaei
Software Mentions: 3
Published: over 7 years ago

10.1002/pmic.201700388

Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib‐Resistant Non‐Small Cell Lung Cancer Cells
Cited by: 19
Author(s): Wang Li, Heyong Wang, Yan Yang, Tian Zhao, Zhixiong Zhang, Ye Tian, Zhaomie Shi, Xiaojun Peng, Fēi Li, Yonghong Feng, Lei Zhang, Gening Jiang, Fan Zhang
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.ppat.1009410

Macrophage-specific responses to human- and animal-adapted tubercle bacilli reveal pathogen and host factors driving multinucleated cell formation
Cited by: 18
Author(s): Christophe J. Queval, Antony Fearns, Laure Botella, Alicia Smyth, Laura Schnettger, Morgane Mitermite, Esen Wooff, Bernardo Villarreal‐Ramos, Waldo L. García-Jiménez, Tiaan Heunis, Matthias Trost, Dirk Werling, Francisco J. Salguero, Stephen V. Gordon, Maximiliano G. Gutiérrez
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-017-12021-2

Differential regulation of vaginal lipocalins (OBP, MUP) during the estrous cycle of the house mouse
Cited by: 25
Author(s): Martina Černá, Barbora Kuntová, Pavel Talacko, Romana Stopková, Pavel Stopka
Software Mentions: 3
Published: almost 9 years ago

10.18632/oncotarget.27462

Identification of molecular targets for the targeted treatment of gastric cancer using dasatinib
Cited by: 26
Author(s): Raquel Carvalho Montenegro, Alison Howarth, Alessandro Ceroni, Vita Fedele, Batoul Farran, Felipe Pantoja Mesquita, Martin Frejno, Benedict‐Tilman Berger, S. Heinzlmeir, Heba Sailem, Roberta Tesch, Daniel Ebner, S. Knapp, Rommel Rodríguez Burbano, Bernhard Küster, Susanne Müller
Software Mentions: 3
Published: over 6 years ago

10.7554/eLife.01630

A proteomic chronology of gene expression through the cell cycle in human myeloid leukemia cells
Cited by: 123
Author(s): Tony Ly, Yasmeen Ahmad, Adam Shlien, Dominique N. Soroka, Allie Mills, Michael J. Emanuele, Michael R. Stratton, Angus I. Lamond
Software Mentions: 3
Published: over 12 years ago

10.7554/eLife.38309

High N-glycan multiplicity is critical for neuronal adhesion and sensitizes the developing cerebellum to N-glycosylation defect
Cited by: 41
Author(s): Daniel Medina-Cano, Ekin Ucuncu, Lam Son Nguyen, Michaël Nicouleau, Joanna Lipecka, Jean-Charles Bizot, Christian Thiel, François Foulquier, Nathalie Lefort, Catherine Faivre‐Sarrailh, Laurence Colleaux, Ida Chiara Guerrera, Vincent Cantagrel
Software Mentions: 3
Published: over 7 years ago

10.1021/acs.jproteome.1c00243

Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance
Cited by: 12
Author(s): Tommaso De Marchi, Paul Theodor Pyl, Martin Sjöström, Stina Klasson, Hanna Sartor, Lena Tran, Gyula Pekár, Johan Malmström, Lars Malmström, Emma Niméus
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms22136806

Proteomics Analysis of Andrographolide-Induced Apoptosis via the Regulation of Tumor Suppressor p53 Proteolysis in Cervical Cancer-Derived Human Papillomavirus 16-Positive Cell Lines
Cited by: 5
Author(s): Pariyakorn Udomwan, Chamsai Pientong, Panwad Tongchai, Ati Burassakarn, Nuchsupha Sunthamala, Sittiruk Roytrakul, Supawadee Suebsasana, Tipaya Ekalaksananan
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.61816

Proteomics reveals synergy between biomass degrading enzymes and inorganic Fenton chemistry in leaf-cutting ant colonies
Cited by: 7
Author(s): Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 2
Published: over 5 years ago

10.1186/s13046-017-0581-6

Annexin A2 could enhance multidrug resistance by regulating NF-κB signaling pathway in pediatric neuroblastoma
Cited by: 31
Author(s): Yi Wang, Kai Chen, Yong Cai, Yuanxia Cai, Xiaojun Yuan, Lifeng Wang, Zhixiang Wu
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13023-021-01679-7

Proteomics analysis of a human brain sample from a mucolipidosis type IV patient reveals pathophysiological pathways
Cited by: 10
Author(s): Ayelet Vardi, Amir Pri-Or, Noa Wigoda, Yulia Grishchuk, Anthony H. Futerman
Software Mentions: 2
Published: over 5 years ago

10.1016/j.joca.2021.02.008

Circadian time series proteomics reveals daily dynamics in cartilage physiology
Cited by: 15
Author(s): Michal Dudek, Constanza Angelucci, Dharshika Pathiranage, Ping Wang, Venkatesh Mallikarjun, Craig Lawless, Joe Swift, Karl E. Kadler, Ray Boot-Handford, Judith A. Hoyland, Shireen R. Lamandé, John F. Bateman, Qing‐Jun Meng
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.60480

Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targets
Cited by: 37
Author(s): Kelsie M Rodriguez, Sara C. Buch-Larsen, Ilsa T Kirby, Ivan Rodriguez Siordia, David Hutin, Marit Rasmussen, Denis M. Grant, Larry L. David, Jason Matthews, Michael L. Nielsen, Michael S. Cohen
Software Mentions: 2
Published: over 5 years ago

10.1038/srep31576

First Comprehensive Proteome Analyses of Lysine Acetylation and Succinylation in Seedling Leaves of Brachypodium distachyon L.
Cited by: 60
Author(s): Shoumin Zhen, Xiong Deng, Jian Wang, Guijie Zhu, Hui Cao, Linlin Yuan, Yueming Yan
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12967-016-0907-8

Cathepsin A inhibition attenuates myocardial infarction-induced heart failure on the functional and proteomic levels
Cited by: 20
Author(s): Agnese Petrera, Johann Gassenhuber, Sven Ruf, Deepika Gunasekaran, Jennifer S. Esser, Jasmin H. Shahinian, Thomas Hübschle, Hartmut Rütten, Thorsten Sadowski, Oliver Schilling
Software Mentions: 2
Published: about 10 years ago

10.1038/srep32481

On the saliva proteome of the Eastern European house mouse (Mus musculus musculus) focusing on sexual signalling and immunity
Cited by: 28
Author(s): Pavel Stopka, Barbora Kuntová, Petr Klempt, Leona Havrdová, Martina Černá, Romana Stopková
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12953-018-0139-3

In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix
Cited by: 25
Author(s): Karlheinz Mann, Nicolas Cerveau, Meike Gummich, Monika Fritz, Matthias Mann, Daniel J. Jackson
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms18040725

Methylmercury Induced Neurotoxicity and the Influence of Selenium in the Brains of Adult Zebrafish (Danio rerio)
Cited by: 29
Author(s): Josef Daniel Rasinger, Anne‐Katrine Lundebye, Samuel Penglase, Ståle Ellingsen, Heidi Amlund
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1008841

Phosphorylation controls RNA binding and transcription by the influenza virus polymerase
Cited by: 13
Author(s): Anthony R. Dawson, Gary Wilson, Elyse C. Freiberger, Arindam Mondal, Joshua J. Coon, Andrew Mehle
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.redox.2019.101265

Oxygen-dependent bond formation with FIH regulates the activity of the client protein OTUB1
Cited by: 13
Author(s): Christina Pickel, Julia Günter, Amalia Ruiz-Serrano, Patrick Spielmann, Jacqueline-Alba Fabrizio, Witold Wolski, Daniel J. Peet, Roland H. Wenger, Carsten C. Scholz
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms18112419

Comparative Proteomic Analysis of Lysine Acetylation in Fish CIK Cells Infected with Aquareovirus
Cited by: 11
Author(s): Hongbo Guo, Jie Zhang, Yaping Wang, Chen Bu, Yanyan Zhou, Fang Qin
Software Mentions: 2
Published: over 8 years ago

10.3390/toxins8040105

Quantitative Proteomic Analysis of Venoms from Russian Vipers of Pelias Group: Phospholipases A2 are the Main Venom Components
Cited by: 29
Author(s): Sergey I. Kovalchuk, Rustam H. Ziganshin, Vladislav G. Starkov, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 2
Published: about 10 years ago

10.3390/ijms19010296

Preservation Method and Phosphate Buffered Saline Washing Affect the Acute Myeloid Leukemia Proteome.
Cited by: 3
Author(s): Rebecca Wangen, Elise Aasebø, Andrea Trentani, Stein Ove Døskeland, Øystein Bruserud, Frode Selheim, Maria Hernandez-Valladares
Software Mentions: 2
Published: over 8 years ago

10.1002/jev2.12122

Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions
Cited by: 21
Author(s): Glenn Vergauwen, Joeri Tulkens, Cláudio Pinheiro, Francisco Avila Cobos, Sándor Dedeyne, Marie‐Angélique De Scheerder, Linos Vandekerckhove, Francis Impens, Ilkka Miinalainen, Geert Braems, Kris Gevaert, Pieter Mestdagh, Jo Vandesompele, Hannelore Denys, Olivier De Wever, An Hendrix
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms19124123

High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines
Cited by: 7
Author(s): Shixiong Wang, Sachin Kumar Singh, Madhumohan R. Katika, Sandra López-Avilés, Antoni Hurtado
Software Mentions: 2
Published: over 7 years ago

10.3390/jof6040360

Examining the Impacts of CO2 Concentration and Genetic Compatibility on Perennial Ryegrass—Epichloë festucae var lolii Interactions
Cited by: 7
Author(s): Jennifer Geddes‐McAlister, Arjun Sukumaran, Aurora Patchett, Heather A. Hager, Jenna C. M. Dale, Jennifer L. Roloson, Nicholas Prudhomme, Kim A. Bolton, Benjamin Muselius, Jacqueline E. Powers, Jonathan A. Newman
Software Mentions: 2
Published: over 5 years ago

10.1038/srep18443

Treating Colon Cancer Cells with FK228 Reveals a Link between Histone Lysine Acetylation and Extensive Changes in the Cellular Proteome
Cited by: 12
Author(s): Tianyun Wang, Yanjie Jia, Xi Zhang, Sun Qilin, Yi-Chun Li, Junhe Zhang, Zhao Chun-hua, Xiaoyin Wang, Li Wang
Software Mentions: 2
Published: over 10 years ago

10.1007/s00535-021-01802-2

Alteration of protein expression and spliceosome pathway activity during Barrett’s carcinogenesis
Cited by: 1
Author(s): Christoph Stingl, Angela Bureo Gonzalez, Coşkun Güzel, Kai Yi N. Phoa, Michail Doukas, Gerben E. Breimer, Sybren L. Meijer, Jacques Bergman, Theo M. Luider
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.ijms.2015.07.029

Evaluating the use of HILIC in large-scale, multi dimensional proteomics: Horses for courses?
Cited by: 8
Author(s): Dalila Bensaddek, Armel Nicolas
Software Mentions: 2
Published: over 10 years ago

10.1016/j.ijmm.2015.12.003

Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations
Cited by: 17
Author(s): Luana Maggiore, Lu Yu, Ulrich Omasits, Omar Rossi, Gordon Dougan, Nicholas R. Thomson, Allan Saul, Jyoti S. Choudhary, Christiane Gerke
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms20123073

Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis
Cited by: 10
Author(s): Ana Dienstbier, Fabian Amman, Daniel Štipl, Denisa Petráčková, Branislav Večerek
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1009580

A Ran-binding protein facilitates nuclear import of human papillomavirus type 16
Cited by: 10
Author(s): Kun-Yi Lai, Matteo Rizzato, Inci Aydin, Ruth Villalonga-Planells, Hannes C.A. Drexler, Mario Schelhaas
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms20164013

Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis
Cited by: 34
Author(s): Linda Elowsson Rendin, Anna Löfdahl, Emma Åhrman, Catharina Müller, Thomas Notermans, Barbora Michaliková, Oskar Rosmark, Xin Zhou, Göran Dellgren, Martin Silverborn, Leif Bjermer, Anders Malmström, Anna‐Karin Larsson‐Callerfelt, Hanna Isaksson, Johan Malmström, Gunilla Westergren‐Thorsson
Software Mentions: 2
Published: almost 7 years ago

10.1073/pnas.2007056117

Histone variants in archaea and the evolution of combinatorial chromatin complexity
Cited by: 27
Author(s): Kathryn M Stevens, Jacob B. Swadling, Antoine Hocher, Corinna Bang, Simonetta Gribaldo, Ruth A. Schmitz, Tobias Warnecke
Software Mentions: 2
Published: over 5 years ago

10.1038/srep39049

Interactomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation
Cited by: 17
Author(s): Namgyu Lee, Sung Jin Park, Ghazal Haddad, Dae-Kyum Kim, Seon‐Min Park, Sang Ki Park, Kwan Yong Choi
Software Mentions: 2
Published: over 9 years ago

10.1155/2018/3982942

Proteomic Identification of Heat Shock-Induced Danger Signals in a Melanoma Cell Lysate Used in Dendritic Cell-Based Cancer Immunotherapy
Cited by: 7
Author(s): Fermín E. González, Alexey Chernobrovkin, Carlos Pereda, Tamara García-Salum, Andrés Tittarelli, Mercedes López, Flavio Salazar‐Onfray, Roman A. Zubarev
Software Mentions: 2
Published: over 8 years ago

10.1038/srep19926

Quantitative Analysis of Global Proteome and Lysine Acetylome Reveal the Differential Impacts of VPA and SAHA on HL60 Cells
Cited by: 30
Author(s): Xiaoyu Zhu, Xin Liu, Zhongyi Cheng, Jun Zhu, Lei Xu, Fengsong Wang, Wulin Qi, Jiawei Yan, Ning Liu, Zimin Sun, Huilan Liu, Xiaojun Peng, Yingchan Hao, Zheng Nan, Qiulian Wu
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms20235911

Global Proteomic Analysis Reveals Widespread Lysine Succinylation in Rice Seedlings
Cited by: 10
Author(s): Kai Zhang, Ye Xiong, Wenxian Sun, Guo‐Liang Wang, Wende Liu
Software Mentions: 2
Published: over 6 years ago

10.1038/srep21069

Comprehensive profiling of lysine acetylproteome analysis reveals diverse functions of lysine acetylation in common wheat
Cited by: 67
Author(s): Yumei Zhang, Limin Song, Wenxing Liang, Mu Peng, Shu Wang, Qingsong Lin
Software Mentions: 2
Published: over 10 years ago

10.1038/srep41089

Multi-omics analyses reveal metabolic alterations regulated by hepatitis B virus core protein in hepatocellular carcinoma cells
Cited by: 34
Author(s): Qiang Xie, Fengxu Fan, Wei Wei, Liu Yang, Zhongwei Xu, Linhui Zhai, Yingzi Qi, Bingyu Ye, Yao Zhang, Sumit Basu, Zhihu Zhao, Junzhu Wu, Ping Xu
Software Mentions: 2
Published: over 9 years ago

10.1038/srep21635

Complementary Post Transcriptional Regulatory Information is Detected by PUNCH-P and Ribosome Profiling
Cited by: 20
Author(s): Hadas Zur, Ranen Aviner, Tamir Tuller
Software Mentions: 2
Published: over 10 years ago

10.1038/srep42062

Proteome and Acetylome Analysis Identifies Novel Pathways and Targets Regulated by Perifosine in Neuroblastoma
Cited by: 13
Author(s): Xiao Gu, Zhongyan Hua, Yuzhu Dong, Yue Zhan, Xiaowen Zhang, Wei Tian, Zhihui Liu, Carol J. Thiele, Zhijie Li
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms21051659

The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for Secretion
Cited by: 13
Author(s): Malgorzata Dubiel, Tibo De Coninck, Vinicius Jose Da Silva Osterne, Isabel Verbeke, Daniël Van Damme, Guy Smagghe, Els J.M. Van Damme
Software Mentions: 2
Published: over 6 years ago

10.1530/JME-17-0036

Serum estradiol levels in controlled ovarian stimulation directly affect the endometrium
Cited by: 34
Author(s): Kalim Ullah, Tanzil Ur Rahman, Hai Tao Pan, Meng Guo, Xin Yan Dong, Juan Liu, Lu Jin, Yi Cheng, Ke Zhang, Jun Ren, Xian-Hua Lin, Xiao Xiao Qiu, Ting Ting Wang, He‐Feng Huang, Jian‐Zhong Sheng
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms21072331

Sugar Beet (Beta vulgaris) Guard Cells Responses to Salinity Stress: A Proteomic Analysis
Cited by: 15
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Leiting Li, Heng Zhang, Zhong‐Hua Chen, Rainer Hedrich, Richard Wilson, Sergey Shabala
Software Mentions: 2
Published: about 6 years ago

10.1007/s00109-017-1582-9

A map of human circular RNAs in clinically relevant tissues
Cited by: 253
Author(s): Philipp G. Maass, Petar Glažar, Sebastian Memczak, Gunnar Dittmar, Irene Hollfinger, Luisa Schreyer, Aisha V. Sauer, Okan Toka, Alessandro Aiuti, Friedrich C. Luft, Nikolaus Rajewsky
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms21114126

Comprehensive Bioinformatics Identifies Key microRNA Players in ATG7-Deficient Lung Fibroblasts
Cited by: 10
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Jan Fiedler, Xiaoyan Ke, Anna‐Katharina Meinecke, Annette Just, Andreas Pich, Thomas Thum, Meik Kunz
Software Mentions: 2
Published: about 6 years ago

10.1038/srep42800

The ubiquitin ligase Cullin5SOCS2 regulates NDR1/STK38 stability and NF-κB transactivation
Cited by: 31
Author(s): Indranil Paul, Tanveer S. Batth, Diego Iglesias-Gato, Amna Al-Araimi, Ibrahim Al-Haddabi, Amira Alkharusi, Gunnar Norstedt, Jesper V. Olsen, Fahad Zadjali, Amílcar Flores-Morales
Software Mentions: 2
Published: over 9 years ago

10.1038/srep21764

Succinyl-proteome profiling of a high taxol containing hybrid Taxus species (Taxus × media) revealed involvement of succinylation in multiple metabolic pathways
Cited by: 31
Author(s): Chenjia Shen, Jie Xue, Tao Sun, Hong Guo, Lei Zhang, Yijun Meng, Huizhong Wang
Software Mentions: 2
Published: over 10 years ago

10.1016/j.xpro.2021.100417

Identifying cytokine signaling signatures in primary human Th-1 cells by phospho-proteomics analysis
Cited by: 0
Author(s): Jonathan Martínez-Fábregas, Elizabeth Pöhler, Ignacio Moraga
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21176153

The Structure of Clostridioides difficile SecA2 ATPase Exposes Regions Responsible for Differential Target Recognition of the SecA1 and SecA2-Dependent Systems
Cited by: 0
Author(s): Nataša Lindič, Jure Loboda, Aleksandra Usenik, Robert Vidmar, Dušan Turk
Software Mentions: 2
Published: almost 6 years ago

10.1128/mBio.03171-19

Listeria monocytogenes Exploits Mitochondrial Contact Site and Cristae Organizing System Complex Subunit Mic10 To Promote Mitochondrial Fragmentation and Cellular Infection
Cited by: 20
Author(s): Frédéric A. Carvalho, Anna Spier, Thibault Chaze, Mariette Matondo, Pascale Cossart, Fabrizia Stavru
Software Mentions: 2
Published: over 6 years ago

10.1002/pmic.201400372

Computational phosphoproteomics: From identification to localization
Cited by: 23
Author(s): Dave C. H. Lee, Andrew R. Jones, Simon J. Hubbard
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms21218210

Comparative Ubiquitome Analysis under Heat Stress Reveals Diverse Functions of Ubiquitination in Saccharina japonica
Cited by: 7
Author(s): Pengyan Zhang, Fuli Liu, Siqing Chen, Zhourui Liang, Wenjun Wang, Xiuyun Sun
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-02128-x

Quantitative Succinyl-Proteome Profiling of Camellia sinensis cv. ‘Anji Baicha’ During Periodic Albinism
Cited by: 35
Author(s): Yan-Xia Xu, Chenjia Shen, Jianqiang Ma, Wei Chen, Juan Mao, Yanyan Zhou, Liang Chen
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms21239043

Multi-Omics Integration Highlights the Role of Ubiquitination in CCl4-Induced Liver Fibrosis
Cited by: 9
Author(s): María Mercado-Gómez, Fernando Lopitz‐Otsoa, Mikel Azkargorta, Marina Serrano‐Maciá, Sofía Lachiondo‐Ortega, Naroa Goikoetxea‐Usandizaga, Rubén Rodríguez-Agudo, David Fernández‐Ramos, Maider Bizkarguenaga, Virginia Gutiérrez‐de Juan, Benoît Lectez, Kerman Aloria, Jesús M. Arizmendi, Jorge Simón, Cristina Alonso, Juan José Lozano, Matías A. Ávila, Jesús M. Bañales, J. J. G. Marin, Naiara Beraza, José M. Mato, Félix Elortza, Rosa Barrio, James D. Sutherland, Ugo Mayor, María Luz Martínez‐Chantar, Teresa C. Delgado
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21249706

Distinct Preflowering Drought Tolerance Strategies of Sorghum bicolor Genotype RTx430 Revealed by Subcellular Protein Profiling
Cited by: 9
Author(s): Aaron J. Ogden, Shadan Abdali, Kristin Engbrecht, Mowei Zhou, Pubudu Handakumbura
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22010428

Salinity Effects on Guard Cell Proteome in Chenopodium quinoa
Cited by: 19
Author(s): Fatemeh Rasouli, Ali Kiani‐Pouya, Lana Shabala, Leiting Li, Ayesha Tahir, Min Yu, Rainer Hedrich, Zhong‐Hua Chen, Richard Wilson, Heng Zhang, Sergey Shabala
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.03649-20

Whole-Genome Transformation Promotes tRNA Anticodon Suppressor Mutations under Stress
Cited by: 2
Author(s): Quinten Deparis, Jorge Duitama, María R. Foulquié-Moreno, Johan M. Thevelein
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.50416

PPM1H phosphatase counteracts LRRK2 signaling by selectively dephosphorylating Rab proteins
Cited by: 85
Author(s): Kerryn Berndsen, Paweł Lis, Wondwossen M Yeshaw, Paulina S. Wawro, Raja Sekhar Nirujogi, Melanie Wightman, Thomas Macartney, Mark Dorward, Axel Knebel, Francesca Tonelli, Suzanne R Pfeffer, Dario R. Alessi
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms22073690

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective
Cited by: 10
Author(s): Veronique Jonckheere, Petra Van Damme
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22073740

RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell Cycle
Cited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: about 5 years ago

10.1128/mBio.00262-21

The Breadth and Molecular Basis of Hcp-Driven Type VI Secretion System Effector Delivery
Cited by: 15
Author(s): Sophie A. Howard, R. Christopher D. Furniss, Dora Bonini, Himani Amin, Patricia Paracuellos, David Zlotkin, Tiago Costa, Asaf Levy, Despoina A. I. Mavridou, Alain Filloux
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22115619

Molecular Mechanisms of Fetal Tendon Regeneration Versus Adult Fibrous Repair
Cited by: 11
Author(s): Iris Ribitsch, Andrea Bileck, Alexander D. Aldoshin, Maciej M. Kańduła, Rupert L. Mayer, Monika Egerbacher, Simone Gabner, Ulrike Auer, Sinan Gültekin, Johann Huber, David P. Kreil, Christopher Gerner, Florien Jenner
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.27356

A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis
Cited by: 43
Author(s): Ajay Mishra, Bénédicte Oulès, Angela Oliveira Pisco, Tony Ly, Kifayathullah Liakath‐Ali, Gernot Walko, Priyalakshmi Viswanathan, Matthieu Tihy, Jagdeesh Nijjher, Sara-Jane Dunn, Angus I. Lamond, Fiona M. Watt
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.58288

The host exosome pathway underpins biogenesis of the human cytomegalovirus virion
Cited by: 23
Author(s): Declan L. Turner, Denis V. Korneev, John Purdy, Alex de Marco, Rommel A. Mathias
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSphere.00792-20

Phosphorylation of <i>Toxoplasma gondii</i> Secreted Proteins during Acute and Chronic Stages of Infection
Cited by: 6
Author(s): Joanna C. Young, Malgorzata Broncel, Helena Teague, Mark Russell, Olivia L. McGovern, Matthew J. Renshaw, David Frith, Ambrosius P. Snijders, Lucy Collinson, Vern B. Carruthers, Sarah E. Ewald, Moritz Treeck
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009326

The pentose phosphate pathway constitutes a major metabolic hub in pathogenic Francisella
Cited by: 13
Author(s): Héloïse Rytter, Anne Jamet, Jason Ziveri, Elodie Ramond, Mathieu Coureuil, Pauline Lagouge-Roussey, Daniel Euphrasie, Fabiola Tros, Nicolas Goudin, Cérina Chhuon, Ivan Nemazanyy, Fabrício Edgar de Moraes, Carlos Alberto Labate, Ida Chiara Guerrera, Alain Charbit
Software Mentions: 2
Published: almost 5 years ago

10.1111/jnc.14845

NYX‐2925 induces metabotropic<i>N</i>‐methyl‐<scp>d</scp>‐aspartate receptor (NMDAR) signaling that enhances synaptic NMDAR and α‐amino‐3‐hydroxy‐5‐methyl‐4‐isoxazolepropionic acid receptor
Cited by: 6
Author(s): M. Scott Bowers, Luisa P. Cacheaux, Srishti U. Sahu, Matthew Schmidt, Joseph A. Sennello, Katherine Leaderbrand, M. Amin Khan, Roger A. Kroes, Joseph R. Moskal
Software Mentions: 2
Published: over 6 years ago

10.1038/sdata.2015.74

Hair-bundle proteomes of avian and mammalian inner-ear utricles
Cited by: 12
Author(s): Phillip A. Wilmarth, Jocelyn F. Krey, Jung Bum Shin, Dongseok Choi, Larry L. David, Peter G. Barr-Gillespie
Software Mentions: 2
Published: over 10 years ago

10.1155/2019/5879616

Circulating Cancer Stem Cell-Derived Extracellular Vesicles as a Novel Biomarker for Clinical Outcome Evaluation
Cited by: 31
Author(s): Davide Brocco, Paola Lanuti, Pasquale Simeone, Giuseppina Bologna, Damiana Pieragostino, Maria Concetta Cufaro, Vincenzo Graziano, Marta Peri, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Ilario Giovanni Rapposelli, Laura Pierdomenico, Eva Ercolino, Fausta Ciccocioppo, Piero Del Boccio, Marco Marchisio, Clara Natoli, Sebastianó Miscia, Nicola Tinari
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.45916

In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation
Cited by: 60
Author(s): Alison K. Gillingham, Jessie Bertram, Farida Begum, Sean Munro
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.45863

Endothelial EphB4 maintains vascular integrity and transport function in adult heart
Cited by: 29
Author(s): Guillermo Luxán, Jonas Stewen, Noèlia Díaz, Katsuhiro Kato, Sathish Kumar Maney, Anusha Aravamudhan, Frank Berkenfeld, Nina Nagelmann, Hannes C.A. Drexler, Dagmar Zeuschner, Cornelius Faber, Hermann Schillers, Sven Hermann, John Wiseman, Juan M. Vaquerizas, Mara E. Pitulescu, Ralf H. Adams
Software Mentions: 2
Published: over 6 years ago

10.1038/srep29313

Proteome-wide analysis of lysine acetylation in the plant pathogen Botrytis cinerea
Cited by: 38
Author(s): Binna Lv, Qiwen Yang, Delong Li, Wenxing Liang, Limin Song
Software Mentions: 2
Published: almost 10 years ago

10.18632/oncotarget.8504

ATG9A loss confers resistance to trastuzumab via c-Cbl mediated Her2 degradation
Cited by: 20
Author(s): João Nunes, Hua Zhang, Nicos Angelopoulos, Jyoti Chhetri, Clodia Osipo, Arnhild Grothey, Justin Stebbing, Georgios Giamas
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-017-10493-w

Functional proteomics outlines the complexity of breast cancer molecular subtypes
Cited by: 48
Author(s): Angelo Gámez‐Pozo, Lucía Trilla-Fuertes, Julia Berges-Soria, Nathalie Selevsek, Rocío López-Vacas, Mariana Díaz-Almirón, Paolo Nanni, Jorge M. Arevalillo, Hilario Navarro, Jonas Grossmann, Francisco Gayá Moreno, Rubén Gómez Rioja, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Paloma Maı́n, Jaime Feliú, Purificación Martínez del Prado, Pilar Zamora, Eva Ciruelos, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.14272

CD147: a small molecule transporter ancillary protein at the crossroad of multiple hallmarks of cancer and metabolic reprogramming
Cited by: 34
Author(s): Agnieszka A. Kendrick, Johnathon Schafer, Monika Dzieciątkowska, Travis Nemkov, Angelo D’Alessandro, Deepika Neelakantan, Heide L. Ford, Chad G. Pearson, Colin D. Weekes, Kirk C. Hansen, Elan Eisenmesser
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.67275

Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila
Cited by: 10
Author(s): Luke S Tain, Robert Sehlke, Ralf Leslie Meilenbrock, Thomas Leech, Jonathan Paulitz, Manopriya Chokkalingam, Nagarjuna Nagaraj, Sebastian Grönke, Jenny Fröhlich, Ilian Atanassov, Matthias Mann, Andreas Beyer, Linda Partridge
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.00833-20

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage
Cited by: 10
Author(s): Patrick J. Willems, Igor Fijałkowski, Petra Van Damme
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.12632

Proteomic analysis reveals diverse proline hydroxylation-mediated oxygen-sensing cellular pathways in cancer cells
Cited by: 26
Author(s): Tong Zhou, Luke Erber, Bing Liu, Yankun Gao, Hai Bin Ruan, Yue Chen
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-11513-5

A Brain-Derived Neurotrophic Factor Mimetic Is Sufficient to Restore Cone Photoreceptor Visual Function in an Inherited Blindness Model
Cited by: 31
Author(s): Conor Daly, Lisa Shine, Theresa Heffernan, Sudhakar Deeti, Alison Reynolds, John O’Connor, Eugene Dillon, David J. Duffy, Walter Kölch, Gerard Cagney, Breandán N. Kennedy
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.34202

Local and global influences on protein turnover in neurons and glia
Cited by: 154
Author(s): Aline Ricarda Dörrbaum, Lisa Kochen, Julian D. Langer, Erin M. Schuman
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.41608

In-depth human plasma proteome analysis captures tissue proteins and transfer of protein variants across the placenta
Cited by: 48
Author(s): Maria Pernemalm, AnnSofi Sandberg, Yong Zhu, Jorrit Boekel, Davide Tamburro, Jochen M. Schwenk, Albin Björk, Marie Wahren‐Herlenius, Hanna Åmark, Claes‐Göran Östenson, Magnus Westgren, Janne Lehtiö
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.22413

Renal oncocytoma characterized by the defective complex I of the respiratory chain boosts the synthesis of the ROS scavenger glutathione
Cited by: 24
Author(s): Gerrit Kürschner, Qingzhou Zhang, Rosanna Clima, Yi Xiao, Jonas Busch, Ergin Kilic, Klaus Jung, Nikolaus Berndt, Sascha Bulik, Hermann‐Georg Holzhütter, Giuseppe Gasparre, Marcella Attimonelli, M. Madan Babu, David Meierhofer
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.22176

ING5 differentially regulates protein lysine acetylation and promotes p300 autoacetylation
Cited by: 13
Author(s): Tao Zhang, Meng Ji, Xinli Liu, Xutao Zhang, Xiaojun Peng, Zhongyi Cheng, Feng Zhang
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.03895

Drep-2 is a novel synaptic protein important for learning and memory
Cited by: 38
Author(s): Till F. M. Andlauer, Sabrina Scholz-Kornehl, Rui Tian, Marieluise Kirchner, Husam Babikir, Harald Depner, Bernhard Loll, Christine Quentin, Varun Gupta, Matthew Holt, Shubham Dipt, Michael Cressy, Markus C. Wahl, André Fiala, Matthias Selbach, Martin Schwärzel, Stephan J. Sigrist
Software Mentions: 2
Published: over 11 years ago

10.18632/oncotarget.24047

Molecular characterization of breast cancer cell response to metabolic drugs
Cited by: 22
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Mariana Díaz-Almirón, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Hilario Navarro, Rosa Aras-López, Irene Dapía, Rocío López-Vacas, Paolo Nanni, Sara Llorente-Armijo, Pedro Arias, Alberto M. Borobia, Paloma Maı́n, Jaime Feliú, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.67437

Quantitative mapping of human hair greying and reversal in relation to life stress
Cited by: 24
Author(s): A Rosenberg, Shannon Rausser, Junting Ren, Eugene V. Mosharov, Gabriel Sturm, R. Todd Ogden, Purvi Patel, Rajesh Kumar Soni, Clay Lacefield, Desmond J. Tobin, Ralf Paus, Martin Picard
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00089-21

Quantitative Proteomics Reveals that Hsp90 Inhibition Dynamically Regulates Global Protein Synthesis in Leishmania mexicana
Cited by: 7
Author(s): Karunakaran A. Kalesh, Sandeep Sundriyal, Hirunika Perera, Steven L. Cobb, Paul W. Denny
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00500-21

Surface-Shaving Proteomics of Mycobacterium marinum Identifies Biofilm Subtype-Specific Changes Affecting Virulence, Tolerance, and Persistence
Cited by: 6
Author(s): Kirsi Savijoki, Henna Myllymäki, Hanna Luukinen, Lauri Paulamäki, Leena-Maija Vanha-aho, Aleksandra Svorjova, Ilkka T. Miettinen, Adyary Fallarero, Teemu O. Ihalainen, Jari Yli‐Kauhaluoma, Tuula A. Nyman, Mataleena Parikka
Software Mentions: 2
Published: almost 5 years ago

10.3390/proteomes8020013

The Power of Three in Cannabis Shotgun Proteomics: Proteases, Databases and Search Engines
Cited by: 3
Author(s): Delphine Vincent, Keith W. Savin, Simone Rochfort, Germán Spangenberg
Software Mentions: 2
Published: about 6 years ago

10.1098/rsob.150230

Auxin/AID versus conventional knockouts: distinguishing the roles of CENP-T/W in mitotic kinetochore assembly and stability
Cited by: 20
Author(s): Laura Wood, Daniel G Booth, Giulia Vargiu, Sachio Ohta, Flávia de Lima Alves, Kumiko Samejima, Tatsuo Fukagawa, Juri Rappsilber, William C. Earnshaw
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2021.635550

SP3 Protocol for Proteomic Plant Sample Preparation Prior LC-MS/MS
Cited by: 19
Author(s): Kamil Mikulášek, Hana Konečná, David Potěšil, Renata Holánková, Jan Havliš, Zbyněk Zdráhal
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.01669

Improved Quantitative Plant Proteomics via the Combination of Targeted and Untargeted Data Acquisition
Cited by: 15
Author(s): Gene Hart‐Smith, Rodrigo S. Reis, Peter M. Waterhouse, Marc R. Wilkins
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2015.00739

Global analysis of lysine acetylation in strawberry leaves
Cited by: 60
Author(s): Xianping Fang, Wenyue Chen, Yun Zhao, Songlin Ruan, Heng-Mu Zhang, Chengqi Yan, Liang Jin, Lingling Cao, Jun Zhu, Huiqin Ma, Zhongyi Cheng
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpls.2021.622795

Magnetic Field Induced Changes in the Shoot and Root Proteome of Barley (Hordeum vulgare L.)
Cited by: 7
Author(s): Azita Shabrangy, Arindam Ghatak, Shuang Zhang, Alfred Priller, Palak Chaturvedi
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2018.00056

Auxin-to-Gibberellin Ratio as a Signal for Light Intensity and Quality in Regulating Soybean Growth and Matter Partitioning
Cited by: 53
Author(s): Feng Yang, Yuanfang Fan, Xiaoling Wu, Yajiao Cheng, Qinlin Liu, Lingyang Feng, Junxu Chen, Zhong Lin Wang, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 2
Published: over 8 years ago

10.1074/mcp.RA118.000650

Proteomic Analysis of the Cell Cycle of Procylic Form Trypanosoma brucei
Cited by: 34
Author(s): Thomas W. M. Crozier, Michele Tinti, Richard J. Wheeler, Tony Ly, Michael A. J. Ferguson, Angus I. Lamond
Software Mentions: 2
Published: about 8 years ago

10.3389/fphys.2020.00520

Inflammatory Drivers of Cardiovascular Disease: Molecular Characterization of Senescent Coronary Vascular Smooth Muscle Cells
Cited by: 19
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Meik Kunz, Xiaoyan Ke, Annette Just, Andreas Pich, Johann Bauersachs, Jan Fiedler, Daniel Sedding, Thomas Thum
Software Mentions: 2
Published: about 6 years ago

Projects: cran: Andromeda

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