cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0253084

GroEL is an immunodominant surface-exposed antigen of Rickettsia typhi
Cited by: 4
Author(s): Jessica Rauch, Jessica Barton, Marcel Kwiatkowski, Malte Wunderlich, Pascal Steffen, Kristin Moderzynski, Stefanie Papp, Katharina Höhn, Hella Schwanke, Susanne Witt, Ulricke Richardt, Ute Mehlhoop, Hartmut Schlüter, Verena Pianka, Bernhard Fleischer, Dennis Tappe, Anke Osterloh
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0084430

Dynamic Changes in Mucus Thickness and Ion Secretion during Citrobacter rodentium Infection and Clearance
Cited by: 45
Author(s): Jenny Gustafsson, Nazanin Navabi, Ana M. Rodríguez-Piñeiro, Ala H. A. Alomran, Pushpa Premaratne, Harvey R. Fernandez, Debashish Banerjee, Henrik Sjövall, Gunnar C. Hansson, Sara K. Lindén
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0199349

Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells
Cited by: 7
Author(s): Barbora Šalovská, Hana Janečková, Ivo Fabrik, Radana Karlíková, Lucie Čecháková, Martin Ondrej, Marek Link, David Friedecký, Aleš Tichý
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0172481

Characterization of the human aqueous humour proteome: A comparison of the genders
Cited by: 17
Author(s): Natarajan Perumal, Caroline Manicam, Matthias Steinicke, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0155324

Optimization of Liver Decellularization Maintains Extracellular Matrix Micro-Architecture and Composition Predisposing to Effective Cell Seeding
Cited by: 68
Author(s): Panagiotis Maghsoudlou, Fanourios Georgiades, H. R. Smith, À Milan, Panicos Shangaris, Luca Urbani, Stavros Loukogeorgakis, Benedetta Lombardi, Giuseppe Mazza, Charlotte K. Hagen, Neil J. Sebire, Mark Turmaine, Simon Eaton, Alessandro Olivo, Jasminka Godovac‐Zimmermann, Massimo Pinzani, Paul Gissen, Paolo De Coppi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0197659

Alterations in the brain interactome of the intrinsically disordered N-terminal domain of the cellular prion protein (PrPC) in Alzheimer’s disease
Cited by: 17
Author(s): Sarah Ulbrich, Petra Janning, R. Seidel, Jakob Matschke, Anika Gonsberg, Sebastian Jung, Markus Glatzel, Martin Engelhard, Konstanze F. Winklhofer, Jörg Tatzelt
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0141527

Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the Species- and Strain-Specific Proteome
Cited by: 25
Author(s): Joerg Doellinger, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0052692

Proteomic Comparison of MCF-7 Tumoursphere and Monolayer Cultures
Cited by: 20
Author(s): Brian J. Morrison, Marcus L. Hastie, Yadveer S. Grewal, Zara C. Bruce, Chris Schmidt, Brent A. Reynolds, Jeffrey J. Gorman, J. Alejandro Lopez
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0142162

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
Cited by: 30
Author(s): Paul A. Stewart, Katja Parapatics, Eric A. Welsh, André C. Müller, Haoyun Cao, Bin Fang, John M. Koomen, Steven Eschrich, Keiryn L. Bennett, Eric B. Haura
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0091380

Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method
Cited by: 20
Author(s): Przemysław Płociński, Daniel Laubitz, Dominik Cysewski, Krystian Stoduś, Katarzyna Kowalska, Andrzej Dziembowski
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0183908

Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes
Cited by: 25
Author(s): Julius O. Nyalwidhe, Wojciech J. Grzesik, Tanya C. Burch, Michele L. Semeraro, Tayab Waseem, Ivan Gerling, Raghavendra G. Mirmira, Margaret A. Morris, Jerry L. Nadler
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0147586

Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum)
Cited by: 66
Author(s): Weibo Jin, Fuyong Wu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0204522

Time-resolved proteomics of adenovirus infected cells
Cited by: 16
Author(s): Alberto Valdés, Hongxing Zhao, Ulf Pettersson, Sara Bergström Lind
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0177871

BIRC6 mediates imatinib resistance independently of Mcl-1
Cited by: 15
Author(s): Denis Okumu, Michael P. East, Merlin Levine, Laura E. Herring, Raymond Zhang, Samuel F. Gilbert, David W. Litchfield, Yanping Zhang, Lee M. Graves
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0116702

ABCE1 Is a Highly Conserved RNA Silencing Suppressor
Cited by: 15
Author(s): Kairi Kärblane, Jelena Gerassimenko, Lenne Nigul, Alla Piirsoo, Agata Smialowska, Kadri Vinkel, Per Kylsten, Karl Ekwall, Peter Swoboda, Erkki Truve, Cecilia Sarmiento
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0186806

Mass spectrometry-based quantification of the cellular response to ultraviolet radiation in HeLa cells
Cited by: 4
Author(s): Hong Xu, Xuanyi Chen, Nanjiao Ying, Meixia Wang, Xin Xu, Rongyi Shi, Yuejin Hua
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0232585

Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis
Cited by: 4
Author(s): Benoît Besson, Justine Basset, Sandrine Gatellier, Hélène Chabrolles, Thibault Chaze, Véronique Hourdel, Mariette Matondo, Nathalie Pardigon, Valérie Choumet
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0094391

Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and Metabolism
Cited by: 28
Author(s): Christin Siewert, Toni Luge, Bojan Duduk, E. Seemüller, Carmen Büttner, Sascha Sauer, Michael Kube
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0206478

Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research
Cited by: 25
Author(s): Lukas Schilde, Steffen Kösters, Simone Steinbach, Karin Schork, Martin Eisenacher, Sara Galozzi, Michael Turewicz, Katalin Barkovits, Brit Mollenhauer, Katrin Marcus, Caroline May
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0151764

Proteins in the Cocoon of Silkworm Inhibit the Growth of Beauveria bassiana
Cited by: 23
Author(s): Xiaomeng Guo, Zhaoming Dong, Yan Zhang, Youshan Li, Huawei Liu, Qingyou Xia, Ping Zhao
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0072951

Accurate LC Peak Boundary Detection for 16O/18O Labeled LC-MS Data
Cited by: 8
Author(s): Jian Cui, Konstantinos Pétritis, Tony Tegeler, Brianne Petritis, Xuepo Ma, Yufang Jin, Shou‐Jiang Gao, Jianqiu Michelle Zhang
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0198985

Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks
Cited by: 14
Author(s): Yuqin Wu, Jianhui Li, Xuze Qin, Shiqiang Sun, Zhibin Xiao, Xiaoyu Dong, Muhammad Shahid, Dafei Yin, Jianmin Yuan
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers12030685

Vitamin C Restricts the Emergence of Acquired Resistance to EGFR-Targeted Therapies in Colorectal Cancer
Cited by: 39
Author(s): Annalisa Lorenzato, Alessandro Magrì, Vittoria Matafora, Valentina Audrito, Pamela Arcella, Luca Lazzari, Monica Montone, Simona Lamba, Silvia Deaglio, Salvatore Siena, Andrea Bertotti, Livio Trusolino, Ángela Bachi, Federica Di Nicolantonio, Alberto Bardelli, Sabrina Arena
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12113443

Metabolic Plasticity Is an Essential Requirement of Acquired Tyrosine Kinase Inhibitor Resistance in Chronic Myeloid Leukemia
Cited by: 4
Author(s): Miriam G. Contreras Mostazo, Nina Kurrle, Marta Casado, Dominik C. Fuhrmann, Islam Alshamleh, Björn Häupl, Paloma Martı́n-Sanz, Bernhard Brüne, Hubert Serve, Harald Schwalbe, Frank Schnütgen, Silvia Marín, Marta Cascante
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers12092383

Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic Profiling
Cited by: 9
Author(s): Misol Do, Hongbeom Kim, Dongyoon Shin, Joonho Park, Haeryoung Kim, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers12061371

Progression-Dependent Altered Metabolism in Osteosarcoma Resulting in Different Nutrient Source Dependencies
Cited by: 9
Author(s): Raphaela Fritsche‐Guenther, Yoann Gloaguen, Marieluise Kirchner, Philipp Mertins, Per‐Ulf Tunn, Jennifer Kirwan
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13143404

Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer
Cited by: 2
Author(s): Santosh Renuse, Vijay Sagar Madamsetty, Dong-Gi Mun, Anil K. Madugundu, Smrita Singh, Savita Udainiya, Kiran K. Mangalaparthi, Min‐Sik Kim, Ren Liu, Sunil Kumar, Valery Krasnoperov, Mark J. Truty, Rondell P. Graham, Parkash S. Gill, Debabrata Mukhopadhyay, Akhilesh Pandey
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13010062

The Extracellular Bone Marrow Microenvironment—A Proteomic Comparison of Constitutive Protein Release by In Vitro Cultured Osteoblasts and Mesenchymal Stem Cells
Cited by: 14
Author(s): Elise Aasebø, Even Birkeland, Frode Selheim, Frode S. Berven, Annette K. Brenner, Øystein Bruserud
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11050723

Profiling of Epigenetic Features in Clinical Samples Reveals Novel Widespread Changes in Cancer
Cited by: 19
Author(s): Roberta Noberini, Camilla Restellini, Evelyn Oliva Savoia, Francesco Raimondi, Lavinia Ghiani, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Fausto Maffini, Marta Tagliabue, Mohssen Ansarin, Michela Lupia, Marco Giordano, Daniela Osti, Giuliana Pelicci, Susanna Chiocca, Tiziana Bonaldi
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers13071646

Death Receptor 5 (TNFRSF10B) Is Upregulated and TRAIL Resistance Is Reversed in Hypoxia and Normoxia in Colorectal Cancer Cell Lines after Treatment with Skyrin, the Active Metabolite of Hypericum spp.
Cited by: 7
Author(s): Marián Babinčák, Rastislav Jendželovský, Ján Košuth, Martin Majerník, Jana Vargová, Kamil Mikulášek, Zbyněk Zdráhal, Peter Fedoročko
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13112727

Modulation of Early Neutrophil Granulation: The Circulating Tumor Cell-Extravesicular Connection in Pancreatic Ductal Adenocarcinoma
Cited by: 9
Author(s): Harrys K.C. Jacob, John Lalith Charles Richard, Rossana Signorelli, Tyler Kashuv, Shweta Lavania, Utpreksha Vaish, Ranjitha Boopathy, Ashley Middleton, Melinda Minucci Boone, Sundaram Ramakrishnan, Vikas Dudeja, Ashok K. Saluja
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13112840

A Novel Benzopyrane Derivative Targeting Cancer Cell Metabolic and Survival Pathways
Cited by: 3
Author(s): Dana M. Zaher, Wafaa Ramadan, Raafat El‐Awady, Hany A. Omar, Fatema Hersi, Vunnam Srinivasulu, Ibrahim Y. Hachim, Farah Al-Marzooq, Cijo George Vazhappilly, Salim Merali, Carmen Merali, Nelson C. Soares, Paul Schilf, Saleh M. Ibrahim, Taleb H. Al‐Tel
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13030563

Cysteine-Rich Angiogenic Inducer 61: Pro-Survival Function and Role as a Biomarker for Disseminating Breast Cancer Cells
Cited by: 5
Author(s): Kai Bartkowiak, Isabel Heidrich, Marcel Kwiatkowski, Tobias M. Gorges, Antje Andreas, Maria Geffken, Karl Verpoort, Volkmar Müller, Hartmut Schlüter, Klaus Pantel
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12040790

Proteomic Discovery of Biomarkers to Predict Prognosis of High-Grade Serous Ovarian Carcinoma
Cited by: 15
Author(s): Se Ik Kim, Min-A Jung, Kisoon Dan, Sungyoung Lee, Cheol Lee, Hee Seung Kim, Hyun Hoon Chung, Jae Weon Kim, Noh Hyun Park, Yong Sang Song, Dohyun Han, Maria Lee
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13153890

Mass Spectrometry-Based Proteomic Discovery of Prognostic Biomarkers in Adrenal Cortical Carcinoma
Cited by: 10
Author(s): Han Na Jang, Seong-Yong Moon, Kyeong Cheon Jung, Sang Wan Kim, Hyeyoon Kim, Dohyun Han, Jung Hee Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13040585

Phenotypic and Proteomic Analysis Identifies Hallmarks of Blood Circulating Extracellular Vesicles in NSCLC Responders to Immune Checkpoint Inhibitors
Cited by: 24
Author(s): Davide Brocco, Paola Lanuti, Damiana Pieragostino, Maria Concetta Cufaro, Pasquale Simeone, Giuseppina Bologna, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Luciana Irtelli, Laura De Lellis, Serena Veschi, Rosalba Florio, L. Federici, Marco Marchisio, Sebastianó Miscia, Alessandro Cama, Nicola Tinari, Piero Del Boccio
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11081166

Cisplatin-Resistance in Oral Squamous Cell Carcinoma: Regulation by Tumor Cell-Derived Extracellular Vesicles
Cited by: 48
Author(s): Xin Hui Khoo, Ian C. Paterson, Bey Hing Goh, Wai Leng Lee
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers11122032

Gigantol Targets Cancer Stem Cells and Destabilizes Tumors via the Suppression of the PI3K/AKT and JAK/STAT Pathways in Ectopic Lung Cancer Xenografts
Cited by: 33
Author(s): Nattanan Losuwannarak, Arnatchai Maiuthed, Nakarin Kitkumthorn, Asada Leelahavanichkul, Sittiruk Roytrakul, Pithi Chanvorachote
Software Mentions: 1
Published: almost 7 years ago

10.3390/cancers12041018

Moesin (MSN) as a Novel Proteome-Based Diagnostic Marker for Early Detection of Invasive Bladder Urothelial Carcinoma in Liquid-Based Cytology
Cited by: 10
Author(s): Jeong Hwan Park, Cheol Lee, Dohyun Han, Jae Seok Lee, Kyung Min Lee, Min Song, Kwangsoo Kim, Heonyi Lee, Kyung Chul Moon, Youngsoo Kim, Min-A Jung, Jiwon Moon, Hyebin Lee, Han Suk Ryu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2016.06.015

Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development
Cited by: 92
Author(s): Bernhard Hampoelz, Marie‐Therese Mackmull, Pedro Machado, Paolo Ronchi, Khanh Huy Bui, Nicole L. Schieber, Rachel Santarella-Mellwig, Aleksandar Necakov, Amparo Andrés-Pons, Jean‐Marc Philippe, Thomas Lecuit, Yannick Schwab, Martin Beck
Software Mentions: 1
Published: over 10 years ago

10.1186/s13578-021-00588-3

Global analysis of HBV-mediated host proteome and ubiquitylome change in HepG2.2.15 human hepatoblastoma cell line
Cited by: 8
Author(s): Shuo Yuan, Tanzeel Yousaf, Xuezhang Tian, Dandan Zheng, Wajeeha Naz, Jiaqi Xu, Yujia Ke, Zuopeng Zhang, Xiaojun Peng, Long Lu, Guihong Sun, Deyin Guo, Min Wang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.chembiol.2019.03.006

Validation and Invalidation of Chemical Probes for the Human N-myristoyltransferases
Cited by: 27
Author(s): Wouter W. Kallemeijn, Gregor A. Lueg, Monica Faronato, Kate S. Hadavizadeh, Andrea Goya Grocin, Ok‐Ryul Song, Michael Howell, Dinis Pedro Calado, Edward W. Tate
Software Mentions: 1
Published: over 7 years ago

10.1016/j.chembiol.2017.07.009

Modulating Protein-Protein Interactions of the Mitotic Polo-like Kinases to Target Mutant KRAS
Cited by: 25
Author(s): A.J. Narvaez, Suzan Ber, Alex T. Crooks, A. N. Emery, B. Hardwick, E.G. Almeida, David J. Huggins, David Perera, Meredith Roberts-Thomson, Roberta Azzarelli, Fiona E. Hood, Ian A. Prior, David W. Walker, Richard J. Boyce, Robert G. Boyle, Samuel P. Barker, C Torrance, Grahame J. McKenzie, Ashok R. Venkitaraman
Software Mentions: 1
Published: about 9 years ago

10.1186/s12964-019-0381-z

Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages
Cited by: 9
Author(s): Marion Janschitz, Natalie Romanov, Gina Varnavides, David Maria Hollenstein, Gabriela Gérecová, Gustav Ammerer, Markus Hartl, Wolfgang Reiter
Software Mentions: 1
Published: over 7 years ago

10.1186/s12964-019-0402-y

Protein phosphatase 2A modulates podocyte maturation and glomerular functional integrity in mice
Cited by: 11
Author(s): Xinyuan Zhu, Yuhong Ye, Chengxian Xu, Cunji Gao, Yingying Zhang, Jing Zhou, Weiqiang Lin, Jianhua Mao
Software Mentions: 1
Published: about 7 years ago

10.1080/15384101.2019.1632126

Identification of proteins associated with splicing factors Ntr1, Ntr2, Brr2 and Gpl1 in the fission yeast <i>Schizosaccharomyces pombe</i>
Cited by: 5
Author(s): Ingrid Čipáková, Matus Jurcik, Veronika Rubintova, Marianna Borbova, Barbora Mikolaskova, Jan Jurcik, Jana Bellová, Péter Baráth, Juraj Gregáň, Luboš Čipák
Software Mentions: 1
Published: over 7 years ago

10.1038/s41418-019-0383-9

Loss of Bcl-G, a Bcl-2 family member, augments the development of inflammation-associated colorectal cancer
Cited by: 7
Author(s): Paul M. Nguyen, Laura F. Dagley, Adele Preaudet, Nga Lam, Maybelline Giam, Ka Yee Fung, Kaheina Aizel, Gemma van Duijneveldt, Chin Wee Tan, Yumiko Hirokawa, Hon Yan Kelvin Yip, Christopher G. Love, Ashleigh R. Poh, Akshay A. D’Cruz, Charlotte Burstroem, Rebecca Feltham, Suad M Abdirahman, Kristy Meiselbach, Ronnie Ren Jie Low, Michelle Palmieri, Matthias Ernst, Andrew I. Webb, Tony Burgess, Oliver M. Sieber, Philippe Bouillet, Tracy L. Putoczki
Software Mentions: 1
Published: about 7 years ago

10.1038/s41418-020-0527-y

Drp1 modulates mitochondrial stress responses to mitotic arrest
Cited by: 17
Author(s): Aida Peña‐Blanco, Manuel D. Haschka, Andreas Jenner, Theresia Zuleger, Tassula Proikas‐Cezanne, Andreas Villunger, Ana J. García‐Sáez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1936-z

TA*p63 and GTAp63 achieve tighter transcriptional regulation in quality control by converting an inhibitory element into an additional transactivation domain
Cited by: 10
Author(s): Susanne Pitzius, Christian Osterburg, Jakob Gebel, Georg Tascher, Björn Malte Schäfer, Huiqing Zhou, Christian Münch, Volker Dötsch
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-020-03177-3

EMC6 regulates acinar apoptosis via APAF1 in acute and chronic pancreatitis
Cited by: 18
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Zhao-chang Qi, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41419-018-0349-8

DZNep inhibits H3K27me3 deposition and delays retinal degeneration in the rd1 mice
Cited by: 30
Author(s): Shoujun Zheng, Lirong Xiao, Yu Liu, Yujiao Wang, Lin Cheng, Junjun Zhang, Naihong Yan, Danian Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-020-2645-3

LncRNA ANRIL acts as a modular scaffold of WDR5 and HDAC3 complexes and promotes alteration of the vascular smooth muscle cell phenotype
Cited by: 53
Author(s): Chengxin Zhang, Shangqing Ge, Wei Gong, Jinguo Xu, Zhixin Guo, Zhuang Liu, Xiaotian Gao, Xiaoyong Wei, Shuping Ge
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-2285-7

Alpha-synuclein fragments trigger distinct aggregation pathways
Cited by: 18
Author(s): Tasnim Chakroun, Valentin Evsyukov, Niko-Petteri Nykänen, Matthias Höllerhage, Andreas Schmidt, Frits Kamp, Viktoria Ruf, Wolfgang Wurst, Thomas W. Rösler, Günter U. Höglinger
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2017.265

Isodeoxyelephantopin induces protective autophagy in lung cancer cells via Nrf2-p62-keap1 feedback loop
Cited by: 59
Author(s): Yang Wang, Jing Zhang, Zhi‐Hao Huang, Xiaohui Huang, Wei-Bin Zheng, Xinhua Yin, Yao-Lan Li, Bin Li, Qing‐Yu He
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-020-2523-z

Formate induces a metabolic switch in nucleotide and energy metabolism
Cited by: 28
Author(s): Kristell Oizel, Jacqueline Tait-Mulder, Jorge Fernández-de-Cossio-Díaz, Matthias Pietzke, Holly Brunton, Sérgio Lilla, Sandeep Dhayade, Dimitris Athineos, Giovanny Rodriguez Blanco, David Sumpton, Gillian Mackay, Karen Blyth, Sara Zanivan, Johannes Meiser, Alexei Vazquez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41420-021-00539-4

The proteolytic landscape of cells exposed to non-lethal stresses is shaped by executioner caspases
Cited by: 4
Author(s): Maria del Carmen Conde Rubio, Roman Mylonas, Christian Widmann
Software Mentions: 1
Published: over 5 years ago

10.1038/celldisc.2016.1

Deubiquitylating enzyme USP9x regulates hippo pathway activity by controlling angiomotin protein turnover
Cited by: 33
Author(s): Hung Thanh Nguyen, Diāna Andrējeva, Rajat Gupta, Chunaram Choudhary, Xin Hong, Pieter J.A. Eichhorn, Anand C Loya, Stephen M. Cohen
Software Mentions: 1
Published: over 10 years ago

10.1038/s41421-018-0041-2

RPS3A positively regulates the mitochondrial function of human periaortic adipose tissue and is associated with coronary artery diseases
Cited by: 18
Author(s): Yan Tang, Yi He, Chen Li, Wenjuan Mu, Ying Zou, Conghui Liu, Shuwen Qian, Fuchuang Zhang, Jiabao Pan, Yina Wang, Haiyan Huang, Dongning Pan, Pengyuan Yang, Ju Mei, Rong Zeng, Qi‐Qun Tang
Software Mentions: 1
Published: about 8 years ago

10.1016/j.chom.2012.06.005

Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis
Cited by: 163
Author(s): Matthew L. Jones, Mark O. Collins, David Goulding, Jyoti S. Choudhary, Julian C. Rayner
Software Mentions: 1
Published: about 14 years ago

10.1016/j.cmet.2013.04.010

Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
Cited by: 328
Author(s): Sean J. Humphrey, Guang Yang, Pengyi Yang, Daniel J. Fazakerley, Jacqueline Stöckli, Pengyi Yang, David E. James
Software Mentions: 1
Published: over 13 years ago

10.1007/s00018-021-03845-3

The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand release
Cited by: 8
Author(s): Stefan Düsterhöft, Selcan Kahveci-Türköz, Justyna Wozniak, Anke Seifert, Petr Kašpárek, Henrike Ohm, Shixin Liu, Jana Kopkanova, Juliane Lokau, Christoph Garbers, Christian Preisinger, Radislav Sedláček, Matthew Freeman, Andreas Ludwig
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2020.108235

Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC Degradation
Cited by: 27
Author(s): Timothy K. Soh, Colin Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, C. L. Smith, Edward Emmott, Robin Antrobus, Stephen C. Graham, Michael P. Weekes, Colin M. Crump
Software Mentions: 1
Published: about 6 years ago

10.1016/j.celrep.2016.02.040

Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal Autophagy
Cited by: 56
Author(s): Tian Zhang, Shichen Shen, Jun Qu, Sina Ghaemmaghami
Software Mentions: 1
Published: over 10 years ago

10.1016/j.celrep.2017.03.020

Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome Replication
Cited by: 37
Author(s): Marija Marić, Progya P. Mukherjee, Michael H. Tatham, Ronald T. Hay, Karim Labib
Software Mentions: 1
Published: over 9 years ago

10.1016/j.celrep.2018.09.007

Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
Cited by: 53
Author(s): Tea Kecman, Krzysztof Kuś, Dong-Hyuk Heo, K Duckett, Adrien Birot, Sabrina Liberatori, Shabaz Mohammed, Lucía Geis-Asteggiante, Carol V. Robinson, Lidia Vasiljeva
Software Mentions: 1
Published: about 8 years ago

10.1016/j.celrep.2019.01.027

Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex
Cited by: 27
Author(s): Ye Dee Tay, Marcin Leda, Christos Spanos, Juri Rappsilber, Andrew B. Goryachev, Kenneth E. Sawin
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2018.10.104

Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint
Cited by: 11
Author(s): Thomas Wild, Magda Budzowska, Susanne Hellmuth, Susana Eibes, Gopal Karemore, Marin Barišić, Olaf Stemmann, Chunaram Choudhary
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2018.08.092

Interplay of Histone Marks with Serine ADP-Ribosylation
Cited by: 72
Author(s): Edward Bartlett, Juán José Bonfiglio, Evgeniia Prokhorova, Thomas Colby, Florian Zobel, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: about 8 years ago

10.1038/s41422-020-0294-9

The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm
Cited by: 21
Author(s): Anne Ramat, Maria-Rosa Garcia-Silva, Camille Jahan, Rima Naït-Saïdi, Jérémy Dufourt, Céline Garret, Aymeric Chartier, Julie Cremaschi, Vipul Patel, Mathilde Decourcelle, Amandine Bastide, François Juge, Martine Simonelig
Software Mentions: 1
Published: over 6 years ago

10.1007/s12192-015-0583-2

Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs
Cited by: 67
Author(s): Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, Pierre Goloubinoff
Software Mentions: 1
Published: over 11 years ago

10.1016/j.tcsw.2019.100023

Assembly and disassembly of Aspergillus fumigatus conidial rodlets
Cited by: 25
Author(s): Isabel Valsecchi, Joey Lai, Emmanuel Stephen-Victor, Ariane Pillé, Audrey Beaussart, Victor Lo, Chi L.L. Pham, Vishukumar Aimanianda, Ann H. Kwan, Magalie Duchateau, Quentin Giai Gianetto, Mariette Matondo, Mélanie Lehoux, Donald C. Sheppard, Yves F. Dufrêne, Jagadeesh Bayry, J. Iñaki Guijarro, Margaret Sunde, Jean‐Paul Latgé
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.cels.2017.09.011

A Compendium of Co-regulated Protein Complexes in Breast Cancer Reveals Collateral Loss Events
Cited by: 44
Author(s): Colm J. Ryan, Susan Kennedy, Ilirjana Bajrami, David Matallanas, Christopher J. Lord
Software Mentions: 1
Published: about 9 years ago

10.3390/cells8050512

Characterization of Lipid and Lipid Droplet Metabolism in Human HCC
Cited by: 53
Author(s): Nikolaus Berndt, Johannes Eckstein, Niklas Heucke, Robert Gajowski, Martin Stockmann, David Meierhofer, Hermann‐Georg Holzhütter
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9020267

Q-Cell Glioblastoma Resource: Proteomics Analysis Reveals Unique Cell-States Are Maintained in 3D Culture
Cited by: 11
Author(s): Rochelle C.J. D’Souza, Carolin Offenhäuser, Jasmin Straube, Ulrich Baumgartner, Anja Kordowski, Yuchen Li, Brett W. Stringer, Hamish Alexander, Zarnie Lwin, Po-Ling Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd, Bryan W. Day
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9112416

BAG3 Proteomic Signature under Proteostasis Stress
Cited by: 14
Author(s): Christof Hiebel, Elisabeth Stürner, Meike Hoffmeister, Georg Tascher, Mario Schwarz, Heike Nagel, Christian Behrends, Christian Münch, Christian Behl
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9112506

Amyloid-β Precursor Protein APP Down-Regulation Alters Actin Cytoskeleton-Interacting Proteins in Endothelial Cells
Cited by: 6
Author(s): Emma Ristori, Vittoria Cicaloni, Laura Salvini, Laura Tinti, Cristina Tinti, Michael Simons, Federico Corti, Sandra Donnini, Marina Ziche
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9091927

FGF2 Inhibits Early Pancreatic Lineage Specification during Differentiation of Human Embryonic Stem Cells
Cited by: 7
Author(s): Rabea Dettmer, Karsten Cirksena, Julia Münchhoff, Jasmin Kresse, Ulf Diekmann, Isabell Niwolik, Falk F. R. Buettner, Ortwin Naujok
Software Mentions: 1
Published: about 6 years ago

10.3390/cells9040847

Structural Similarity with Cholesterol Reveals Crucial Insights into Mechanisms Sustaining the Immunomodulatory Activity of the Mycotoxin Alternariol
Cited by: 19
Author(s): Giorgia Del Favero, Raphaela Maria Mayer, Luca Dellafiora, Lukas Janker, Laura Niederstaetter, Chiara Dall’Asta, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9061517

In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis
Cited by: 17
Author(s): Cheol Woo Min, Joonho Park, Jin‐Woo Bae, Ganesh Kumar Agrawal, Randeep Rakwal, Youngsoo Kim, Pingfang Yang, Sun Tae Kim, Ravi Gupta
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9010227

Establishment and Characterization of Paired Primary Cultures of Human Pancreatic Cancer Cells and Stellate Cells Derived from the Same Tumor
Cited by: 4
Author(s): Manoj Amrutkar, Emma Kristine Larsen, Monica Aasrum, Anette Vefferstad Finstadsveen, Per Arne Andresen, Caroline Verbeke
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8010023

Commonly Used Pancreatic Stellate Cell Cultures Differ Phenotypically and in Their Interactions with Pancreatic Cancer Cells
Cited by: 24
Author(s): Daniela Lenggenhager, Manoj Amrutkar, Petra Sántha, Monica Aasrum, Matthias Löhr, Ivar P. Gladhaug, Caroline Verbeke
Software Mentions: 1
Published: almost 8 years ago

10.3390/cells10071616

Cockayne Syndrome-Associated CSA and CSB Mutations Impair Ribosome Biogenesis, Ribosomal Protein Stability, and Global Protein Folding
Cited by: 11
Author(s): Mingyue Qiang, Fatima Khalid, Tamara Phan, Christina Ludwig, Karin Scharffetter‐Kochanek, Sebastian Iben
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8020191

The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells
Cited by: 5
Author(s): J. Nováková, Pavel Talacko, Petr Novák, Karel Vališ
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9122580

Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson’s Disease
Cited by: 13
Author(s): Sarah Plum, Britta Eggers, Stefan Helling, Markus Stepath, Carsten Theiß, Renata Leite, Mariana Molina, Lea T. Grinberg, Peter Riederer, Manfred Gerlach, Caroline May, Katrin Marcus
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells8070765

Comparison of the RNA Content of Extracellular Vesicles Derived from Paracoccidioides brasiliensis and Paracoccidioides lutzii
Cited by: 41
Author(s): Roberta Peres da Silva, Larissa G. V. Longo, Júlia Pinheiro Chagas da Cunha, Tiago J. P. Sobreira, Márcio L. Rodrigues, Helisson Faoro, Samuel Goldenberg, Lysangela Ronalte Alves, Rosana Puccia
Software Mentions: 1
Published: about 7 years ago

10.3390/cells9102269

Breast Cancer-Derived Microparticles Reduce Cancer Cell Adhesion, an Effect Augmented by Chemotherapy
Cited by: 4
Author(s): Dvir Shechter, Michal Harel, Angshuman Mukherjee, Leonel Munoz Sagredo, David Loven, Elad Prinz, Shimrit Avraham, Véronique Orian−Rousseau, Tamar Geiger, Yuval Shaked, Haguy Wolfenson
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells10020372

Proteomic Adaptation of Clostridioides difficile to Treatment with the Antimicrobial Peptide Nisin
Cited by: 6
Author(s): Sandra Maaß, Jürgen Bartel, Pierre-Alexander Mücke, Rabea Schlüter, Thomas Sura, Julia Zaschke-Kriesche, Sander H. J. Smits, Dörte Becher
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9071709

Revealing the Proteome of Motor Cortex Derived Extracellular Vesicles Isolated from Amyotrophic Lateral Sclerosis Human Postmortem Tissues
Cited by: 21
Author(s): Natasha Vassileff, Laura J. Vella, Harinda Rajapaksha, Mitch Shambrook, Amirmohammad Nasiri Kenari, Catriona McLean, Andrew F. Hill, Lesley Cheng
Software Mentions: 1
Published: about 6 years ago

10.1016/j.chembiol.2015.01.003

Global Analysis of Protein N-Myristoylation and Exploration of N-Myristoyltransferase as a Drug Target in the Neglected Human Pathogen Leishmania donovani
Cited by: 71
Author(s): Megan H. Wright, Daniel Paape, Elisabeth M. Storck, Remigiusz A. Serwa, Deborah F. Smith, Edward W. Tate
Software Mentions: 1
Published: over 11 years ago

10.1016/j.chembiol.2015.06.024

Systems Analysis of Protein Fatty Acylation in Herpes Simplex Virus-Infected Cells Using Chemical Proteomics
Cited by: 48
Author(s): Remigiusz A. Serwa, Fernando Abaitua, Eberhard Krause, Edward W. Tate, Peter O’Hare
Software Mentions: 1
Published: about 11 years ago

10.1039/c5sc03207e

A novel quenched fluorescent activity-based probe reveals caspase-3 activity in the endoplasmic reticulum during apoptosis
Cited by: 39
Author(s): Yulia Shaulov-Rotem, Emmanuelle Merquiol, Tommy Weiss-Sadan, Ofra Moshel, Seth J. Salpeter, Doron Shabat, Farnusch Kaschani, Markus Kaiser, Galia Blum
Software Mentions: 1
Published: almost 11 years ago

10.1039/c5sc01699a

Bridged bicyclic peptides as potential drug scaffolds: synthesis, structure, protein binding and stability
Cited by: 31
Author(s): Marco Bartoloni, Xian Jin, M.J. Marcaida, João Banha, Ivan Dibonaventura, Swathi Bongoni, Kathrin Bartho, Olivia Gräbner, Michael Sefkow, Tamis Darbre, Jean‐Louis Reymond
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13148-017-0369-8

PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples
Cited by: 17
Author(s): Roberta Noberini, Rémi Longuespée, Cristina Richichi, Giancarlo Pruneri, Mark Kriegsmann, Giuliana Pelicci, Tiziana Bonaldi
Software Mentions: 1
Published: about 9 years ago

10.1007/s10585-020-10058-8

Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer
Cited by: 4
Author(s): Hannah Voß, M. Wurlitzer, Daniel J Smit, Florian Ewald, Malik Alawi, Michael Spohn, Daniela Indenbirken, Maryam Omidi, Kerstin A. David, Hartmut Juhl, Ronald Simon, Guido Sauter, Lutz Fischer, Jakob R. Izbicki, Mark P. Molloy, Björn Nashan, Hartmut Schlüter, Manfred Jücker
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12014-021-09322-0

Quantitative proteomic analysis of aberrant expressed lysine acetylation in gastrointestinal stromal tumors
Cited by: 1
Author(s): Bo Wang, Long Zhao, Zhidong Gao, Jianyuan Luo, Haoran Zhang, Lin Gan, Kewei Jiang, Shan Wang, Yingjiang Ye, Zhanlong Shen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12014-018-9219-8

Proteomic analysis of serum proteins from HIV/AIDS patients with Talaromyces marneffei infection by TMT labeling-based quantitative proteomics
Cited by: 16
Author(s): Yahong Chen, Aiwen Huang, Wen Ao, Zhengwu Wang, Jinjin Yuan, Qing Song, Dali Wei, Hanhui Ye
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12014-019-9241-5

Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls
Cited by: 24
Author(s): Tone Berge, Anna Eriksson, Ina Skaara Brorson, Einar August Høgestøl, Pål Berg‐Hansen, Anne P. Døskeland, Olav Mjaavatten, Steffan Daniël Bos, Hanne F. Harbo, Frode S. Berven
Software Mentions: 1
Published: over 7 years ago

10.1186/s12014-016-9116-y

Identification of potential protein biomarkers for early detection of pregnancy in cow urine using 2D DIGE and label free quantitation
Cited by: 30
Author(s): Preeti Rawat, Shveta Bathla, Rubina Kumari Baithalu, Munna Lal Yadav, Sudarshan Kumar, Syed Azmal Ali, Anurag Tiwari, Masoud Lotfan, Jasmine Naru, Manoj Kumar Jena, Pradip Behere, Ashok Kumar Balhara, Rajesh Vashisth, Inderjeet Singh, Ajay Kumar Dang, Jai K. Kaushik, Tushar Kumar Mohanty, Ashok Kumar Mohanty
Software Mentions: 1
Published: about 10 years ago

10.1186/s12014-019-9249-x

Screening differentially expressed proteins from co-cultured hematopoietic cells and bone marrow-derived stromal cells by quantitative proteomics (SILAC) method
Cited by: 7
Author(s): Rui Li, Yi Wang, Bingxin Li, Hui Wang, Feng Guan, Zengqi Tan, Xiang Li
Software Mentions: 1
Published: about 7 years ago

10.1186/1559-0275-11-27

Identification of psoriatic arthritis mediators in synovial fluid by quantitative mass spectrometry
Cited by: 52
Author(s): Daniela Creţu, Ioannis Prassas, Punit Saraon, Ihor Batruch, Rajiv Gandhi, Eleftherios P. Diamandis, Vinod Chandran
Software Mentions: 1
Published: over 12 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724