cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1074/mcp.RA118.000705

Identification of Novel Physiological Substrates of Mycobacterium bovis BCG Protein Kinase G (PknG) by Label-free Quantitative Phosphoproteomics
Cited by: 20
Author(s): Kehilwe C. Nakedi, Bridget Calder, Mousumi Banerjee, Alexander D. Giddey, Andrew J. M. Nel, Shaun Garnett, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 1
Published: about 8 years ago

10.1074/mcp.RA120.002232

In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1
Cited by: 18
Author(s): Nadine Prust, Saar van der Laarse, Henk W. P. van den Toorn, Nina M. van Sorge, Simone Lemeer
Software Mentions: 1
Published: over 5 years ago

10.1155/2014/916212

Power of Proteomics in Linking Oxidative Stress and Female Infertility
Cited by: 73
Author(s): Sajal Gupta, Jana Ghulmiyyah, Rakesh K. Sharma, Jessica El Halabi, Ashok Agarwal
Software Mentions: 1
Published: over 12 years ago

10.1074/mcp.RA119.001886

The Challenge of Classifying Metastatic Cell Properties by Molecular Profiling Exemplified with Cutaneous Melanoma Cells and Their Cerebral Metastasis from Patient Derived Mouse Xenografts
Cited by: 12
Author(s): Benjamin Neuditschko, Lukas Janker, Laura Niederstaetter, Julia Brunmair, Katharina Krivanek, Sivan Izraely, Orit Sagi‐Assif, Tsipi Meshel, Bernhard K. Keppler, Giorgia Del Favero, Christopher Gerner
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA119.001912

An Interaction Network of RNA-Binding Proteins Involved in Drosophila Oogenesis
Cited by: 12
Author(s): Prashali Bansal, Johannes Madlung, Kristina Schaaf, Boris Maček, Fulvia Bono
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA120.002384

Proteomic Analyses Identify Differentially Expressed Proteins and Pathways Between Low-Risk and High-Risk Subtypes of Early-Stage Lung Adenocarcinoma and Their Prognostic Impacts
Cited by: 8
Author(s): Juntuo Zhou, Bing Liu, Zhongwu Li, Yang Li, Xi Chen, Yuanyuan Ma, Yan Shi, Xin Yang, Liang Zhong, Nan Wu
Software Mentions: 1
Published: over 5 years ago

10.3390/nu11102263

Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten Peptides
Cited by: 11
Author(s): Barbara Lexhaller, Christina Ludwig, Katharina Anne Scherf
Software Mentions: 1
Published: almost 7 years ago

10.1074/mcp.M116.060582

Coordination of Metabolism and Virulence Factors Expression of Extraintestinal Pathogenic Escherichia coli Purified from Blood Cultures of Patients with Sepsis
Cited by: 18
Author(s): Veronika Kuchařová Pettersen, Knut Anders Mosevoll, Paul Christoffer Lindemann, Harald G. Wiker
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.biomaterials.2018.05.032

Neighboring cells override 3D hydrogel matrix cues to drive human MSC quiescence
Cited by: 33
Author(s): Sandra Reis Ferreira, Peter Faull, Alexis J. Seymour, Tracy T. L. Yu, Sandra Loaiza, Holger W. Auner, Ambrosius P. Snijders, Eileen Gentleman
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.M115.050245

Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles
Cited by: 71
Author(s): Sally J. Deeb, Stefka Tyanova, Michael Hummel, Marc Schmidt-Supprian, Juergen Cox, Matthias Mann
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40478-020-00943-4

Transmission of ALS pathogenesis by the cerebrospinal fluid
Cited by: 26
Author(s): Pooja-Shree Mishra, Hejer Boutej, Geneviève Soucy, Christine Bareil, Sunil Kumar, Vincent Picher-Martel, Nicolas Dupré, Jasna Križ, Jean‐Pierre Julien
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA118.000958

Mass Spectrometry-based Absolute Quantification of 20S Proteasome Status for Controlled Ex-vivo Expansion of Human Adipose-derived Mesenchymal Stromal/Stem Cells
Cited by: 17
Author(s): Thomas Menneteau, Bertrand Fabre, Luc Garrigues, Alexandre Stella, Dušan Živković, Florence Roux‐Dalvai, Emmanuelle Mouton-Barbosa, Mathilde Beau, Marie-Laure Renoud, François Amalríc, Luc Sensebé, Anne Gonzalez de Peredo, Isabelle Ader, Odile Burlet‐Schiltz, Marie‐Pierre Bousquet
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.TIR120.002129

ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping
Cited by: 21
Author(s): Diana Samodova, Christopher M. Hosfield, Christian N. Cramer, Maria Valeria Giuli, Enrico Cappellini, Giulia Franciosa, Michael Rosenblatt, Christian D. Kelstrup, Jesper V. Olsen
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.RA120.002049

High-dimensional Cytometry (ExCYT) and Mass Spectrometry of Myeloid Infiltrate in Clinically Localized Clear Cell Renal Cell Carcinoma Identifies Novel Potential Myeloid Targets for Immunotherapy
Cited by: 1
Author(s): Debebe Theodros, Benjamin Murter, John-William Sidhom, Thomas R. Nirschl, David Clark, Li Jun Chen, Ada Tam, Richard L. Blosser, Zeyad Schwen, Michael H. Johnson, Phillip M. Pierorazio, Hui Zhang, Sudipto Ganguly, Drew M. Pardoll, Jelani C. Zarif
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA119.001367

The Systemin Signaling Cascade As Derived from Time Course Analyses of the Systemin-responsive Phosphoproteome*
Cited by: 22
Author(s): F. Haj Ahmad, Xu Wu, Annick Stintzi, Andreas Schaller, Waltraud X. Schulze
Software Mentions: 1
Published: about 7 years ago

10.1074/mcp.M116.064428

Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis
Cited by: 24
Author(s): Ivor H. Evans, Susan Kennedy, Ketevan Paliashvili, Tapesh Santra, Maiko Yamaji, Ruth C. Lovering, Gary Britton, Paul Frankel, Walter Kölch, Ian Zachary
Software Mentions: 1
Published: over 9 years ago

10.1111/mec.15298

Evidence for a role of protein phosphorylation in the maintenance of the cnidarian–algal symbiosis
Cited by: 5
Author(s): Fabia Simona, Huoming Zhang, Christian R. Voolstra
Software Mentions: 1
Published: over 6 years ago

10.3390/biology10010058

Does KRAS Play a Role in the Regulation of Colon Cancer Cells-Derived Exosomes?
Cited by: 2
Author(s): Shu Kee Eng, Ilma Ruzni Imtiaz, Bey Hing Goh, Long Chiau Ming, Ya Chee Lim, Wai Leng Lee
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26082397

Proteomic and Bioinformatic Investigation of Altered Pathways in Neuroglobin-Deficient Breast Cancer Cells
Cited by: 16
Author(s): Michele Costanzo, Marco Fiocchetti, Paolo Ascenzi, Maria Marino, Marianna Caterino, Margherita Ruoppolo
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules25184071

High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma
Cited by: 10
Author(s): Elisa Maffioli, Zhenze Jiang, Simona Nonnis, Armando Negri, Valentina Romeo, Christopher B. Lietz, Vivian Hook, Giuseppe Ristagno, Giuseppe Baselli, Erik B. Kistler, Federico Aletti, Anthony J. O’Donoghue, Gioacchino Tedeschi
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules26020287

The UFM1 Pathway Impacts HCMV US2-Mediated Degradation of HLA Class I
Cited by: 7
Author(s): A.B.C. Schuren, Ingrid G. J. Boer, Ellen M Bouma, Michael L. van de Weijer, Ana I. Costa, Philipp Hubel, Andreas Pichlmair, Robert Jan Lebbink, Emmanuel J. H. J. Wiertz
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.11466

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Cited by: 161
Author(s): Koray Kırlı, Samir Karaca, Heinz-Jürgen Dehne, Matthias Samwer, Kuan‐Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
Software Mentions: 1
Published: over 10 years ago

10.3390/molecules26113345

A Multi-Omics Study of Human Testis and Epididymis
Cited by: 4
Author(s): Weimin Zheng, Yang Zhang, Chuanyu Sun, Shengyang Ge, Yimei Tan, Huali Shen, Pengyuan Yang
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules25235571

Profiling the Murine SUMO Proteome in Response to Cardiac Ischemia and Reperfusion Injury
Cited by: 10
Author(s): Paul W. Hotz, Marion Wiesnet, Georg Tascher, Thomas Braun, Stefan Müller, Luca Mendler
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26082164

Effects of 3FTx Protein Fraction from Naja ashei Venom on the Model and Native Membranes: Recognition and Implications for the Mechanisms of Toxicity
Cited by: 6
Author(s): Barbara Dyba, Elżbieta Rudolphi-Szydło, Anna Barbasz, Agnieszka Czyżowska, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Aleksandra Bocian
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules23051217

Synthesis and Insecticidal Activity of Mesoionic Pyrido[1,2-α]pyrimidinone Derivatives Containing a Neonicotinoid Moiety
Cited by: 10
Author(s): Jin Pan, Lu Yu, Dengyue Liu, Deyu Hu
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.63868

Exocyst-mediated membrane trafficking of the lissencephaly-associated ECM receptor dystroglycan is required for proper brain compartmentalization
Cited by: 6
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Henning Urlaub, Halyna R. Shcherbata
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules21010084

Quantitative Analysis of Differential Proteome Expression in Epithelial-to-Mesenchymal Transition of Bladder Epithelial Cells Using SILAC Method
Cited by: 10
Author(s): Ganglong Yang, Wei Lü, Di Yu, Chao Sun, Jia Guo, Li Zheng, Feng Guan
Software Mentions: 1
Published: over 10 years ago

10.3390/molecules25143109

Optimisation of Sporosori Purification and Protein Extraction Techniques for the Biotrophic Protozoan Plant Pathogen Spongospora subterranea
Cited by: 9
Author(s): Sadegh Balotf, Richard Wilson, Robert S. Tegg, David S. Nichols, C. R. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1186/s40659-021-00327-5

Proteome profiling of different rat brain regions reveals the modulatory effect of prolonged maternal separation on proteins involved in cell death-related processes
Cited by: 6
Author(s): Zdeňka Drastichová, Vladimı́r Rudajev, Gergely Pallag, Jiřı́ Novotný
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules21030322

Proteomic Profiling of Iron Overload-Induced Human Hepatic Cells Reveals Activation of TLR2-Mediated Inflammatory Response
Cited by: 8
Author(s): Xiang Li, Shiwei Li, Minyan Lu, Guohua Yang, Yongchun Shen, Xin Zhou
Software Mentions: 1
Published: over 10 years ago

10.1186/s12575-016-0043-0

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients
Cited by: 48
Author(s): Maria Hernandez-Valladares, Elise Aasebø, Olav Mjaavatten, Marc Vaudel, Øystein Bruserud, Frode S. Berven, Frode Selheim
Software Mentions: 1
Published: about 10 years ago

10.1186/s13024-017-0170-3

Quantitative proteomic analysis of Parkin substrates in Drosophila neurons
Cited by: 57
Author(s): Martínez Amador, Benoît Lectez, Juanma Ramírez, Oliver Popp, James D. Sutherland, Sylvie Urbé, Gunnar Dittmar, Michael J. Clague, Ugo Mayor
Software Mentions: 1
Published: over 9 years ago

10.1042/BCJ20160502

TLR and TNF-R1 activation of the MKK3/MKK6–p38α axis in macrophages is mediated by TPL-2 kinase
Cited by: 50
Author(s): Michael J. Pattison, Olivia Mitchell, Helen Flynn, Chao-Sheng Chen, Huei-Ting Yang, Hakem Ben-Addi, Stefan Boeing, Ambrosius P Snijders, Steve Ley
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13024-021-00470-3

Decoding distinctive features of plasma extracellular vesicles in amyotrophic lateral sclerosis
Cited by: 14
Author(s): Laura Pasetto, Stefano Callegaro, Alessandro Corbelli, Fabio Fiordaliso, Deborah Ferrara, Laura Brunelli, Giovanna Sestito, Roberta Pastorelli, Elisa Bianchi, Marina Cretich, Marcella Chiari, Cristina Potrich, Cristina Moglia, Massimo Corbo, Gianni Sorarù, Christian Lunetta, Andrea Calvo, Adriano Chiò, Gabriele Mora, Maria Pennuto, Alessandro Quattrone, Francesco Rinaldi, Vito D’Agostino, Manuela Basso, Valentina Bonetto
Software Mentions: 1
Published: about 5 years ago

10.1038/s41380-018-0306-z

Complement pathway changes at age 12 are associated with psychotic experiences at age 18 in a longitudinal population-based study: evidence for a role of stress
Cited by: 29
Author(s): Melanie Föcking, Sophie Sabherwal, Hannah M. Cates, Caitríona Scaife, Patrick Dicker, Magdalena Hryniewiecka, Kieran Wynne, Bart P. F. Rutten, Glyn Lewis, Mary Cannon, Eric J. Nestler, Meike Heurich, Gerard Cagney, Stanley Zammit, David Cotter
Software Mentions: 1
Published: over 7 years ago

10.1042/BCJ20180043

Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
Cited by: 54
Author(s): Yugo Tsuchiya, Alexander Zhyvoloup, Jovana Baković, Naam Thomas, Bess Yi Kun Yu, Sayoni Das, Christine Orengo, Clare L. Newell, John M. Ward, Giorgio Saladino, Federico Comitani, Francesco Luigi Gervasio, О. М. Маланчук, А. И. Хоруженко, Valeriy Filonenko, Sew Y. Peak‐Chew, Mark Skehel, Ivan Gout
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.36530

Efficient analysis of mammalian polysomes in cells and tissues using Ribo Mega-SEC
Cited by: 37
Author(s): Harunori Yoshikawa, Mark Larance, Dylan Harney, Ramasubramanian Sundaramoorthy, Tony Ly, Tom Owen-Hughes, Angus I. Lamond
Software Mentions: 1
Published: about 8 years ago

10.15252/msb.20177819

Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis
Cited by: 106
Author(s): Markus Hartl, Magdalena Füßl, Paul J. Boersema, Jan Oliver Jost, Katharina Kramer, Ahmet Bakirbas, Julia Sindlinger, Magdalena Plöchinger, Dario Leister, R. Glen Uhrig, Greg B. G. Moorhead, Jürgen Cox, Michael E. Salvucci, Dirk Schwarzer, Matthias Mann, Iris Finkemeier
Software Mentions: 1
Published: almost 9 years ago

10.15252/msb.20145450

<scp>ROCK</scp> 1 is a potential combinatorial drug target for <scp>BRAF</scp> mutant melanoma
Cited by: 48
Author(s): Marjon A. Smit, Gianluca Maddalo, Kylie T. Greig, Linsey M. Raaijmakers, Patrícia A. Possik, Bas van Breukelen, Salvatore Cappadona, Albert J. R. Heck, Maarten Altelaar, Daniel S. Peeper
Software Mentions: 1
Published: over 11 years ago

10.15252/msb.20199111

Automated sample preparation with <scp>SP</scp> 3 for low‐input clinical proteomics
Cited by: 106
Author(s): Torsten Müller, Mathias Kalxdorf, Rémi Longuespée, Daniel Kazdal, Albrecht Stenzinger, Jeroen Krijgsveld
Software Mentions: 1
Published: over 6 years ago

10.15252/msb.20156123

Time‐ and compartment‐resolved proteome profiling of the extracellular niche in lung injury and repair
Cited by: 188
Author(s): Herbert B. Schiller, Isis E. Fernandez, Gerald Burgstaller, Christoph Schaab, Richard A. Scheltema, Thomas Schwarzmayr, Tim M. Strom, Oliver Eickelberg, Matthias Mann
Software Mentions: 1
Published: about 11 years ago

10.15252/msb.20166837

Co‐recruitment analysis of the <scp>CBL</scp> and <scp>CBLB</scp> signalosomes in primary T cells identifies <scp>CD</scp> 5 as a key regulator of <scp>TCR</scp> ‐induced ubiquitylation
Cited by: 35
Author(s): Guillaume Voisinne, Antonio García-Blesa, Karima Chaoui, Frédéric Di Fiore, Elise Bergot, Laura Girard, Marie Malissen, Odile Burlet‐Schiltz, Anne Gonzalez de Peredo, Bernard Malissen, Romain Roncagalli
Software Mentions: 1
Published: about 10 years ago

10.15252/msb.20145227

Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli
Cited by: 121
Author(s): Sara Castaño-Cerezo, Vicente Bernal, Harm Post, Tobias Fuhrer, Salvatore Cappadona, Nerea C. Sanchez-Diaz, Uwe Sauer, Albert J. R. Heck, Maarten Altelaar, Manuel Fernández Cánovas
Software Mentions: 1
Published: almost 12 years ago

10.15252/msb.20145880

Systems‐wide analysis of <scp>BCR</scp> signalosomes and downstream phosphorylation and ubiquitylation
Cited by: 109
Author(s): Shankha Satpathy, Sebastian Wagner, Petra Beli, Rajat Gupta, Trine A. Kristiansen, Dessislava Malinova, Chiara Francavilla, Pavel Tolar, Gail A. Bishop, Bruce S. Hostager, Chunaram Choudhary
Software Mentions: 1
Published: about 11 years ago

10.15252/msb.20177858

Targeting <scp>CDK</scp> 2 overcomes melanoma resistance against <scp>BRAF</scp> and Hsp90 inhibitors
Cited by: 47
Author(s): Alireza Azimi, Stefano Caramuta, Brinton Seashore‐Ludlow, Johan Boström, Jonathan L. Robinson, Fredrik Edfors, Rainer Tuominen, Kristel Kemper, Oscar Krijgsman, Daniel S. Peeper, Jens Nielsen, Johan Hansson, Suzanne Egyházi Brage, Mikael Altun, Mathias Uhlén, Gianluca Maddalo
Software Mentions: 1
Published: over 8 years ago

10.15252/msb.20167144

Gene‐specific correlation of <scp>RNA</scp> and protein levels in human cells and tissues
Cited by: 309
Author(s): Fredrik Edfors, Frida Danielsson, Björn M. Hallström, Lukas Käll, Emma Lundberg, Fredrik Pontén, Björn Forsström, Mathias Uhlén
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12888-020-02540-0

Comparison of serum protein profiles between major depressive disorder and bipolar disorder
Cited by: 26
Author(s): Sang Jin Rhee, Dohyun Han, Yunna Lee, Hye Young Kim, Junhee Lee, Kangeun Lee, Hyunsuk Shin, Hyeyoon Kim, Tae Young Lee, Minah Kim, Se Hyun Kim, Yong Min Ahn, Jun Soo Kwon, Kyooseob Ha
Software Mentions: 1
Published: over 6 years ago

10.15252/msb.20188793

Plasma proteome profiling discovers novel proteins associated with non‐alcoholic fatty liver disease
Cited by: 155
Author(s): Lili Niu, Philipp Geyer, Nicolai J. Wewer Albrechtsen, Lise Lotte Gluud, Alberto Santos, Sophia Doll, Peter V. Treit, Jens J. Holst, Filip K. Knop, Tina Vilsbøll, Anders E Junker, Stephan Sachs, Kerstin Stemmer, Timo Müller, Matthias H. Tschöp, Susanna M. Hofmann
Software Mentions: 1
Published: over 7 years ago

10.15252/msb.20209524

LymphoAtlas: a dynamic and integrated phosphoproteomic resource of <scp>TCR</scp> signaling in primary T cells reveals <scp>ITSN</scp> 2 as a regulator of effector functions
Cited by: 10
Author(s): Marie Locard‐Paulet, Guillaume Voisinne, Carine Froment, Marisa Goncalves Menoita, Youcef Ounoughene, Laura Girard, Claude Grégoire, Daiki Mori, Manuel Martínez, Hervé Luche, Jérôme Garin, Marie Malissen, Odile Burlet‐Schiltz, Bernard Malissen, Anne Gonzalez de Peredo, Romain Roncagalli
Software Mentions: 1
Published: about 6 years ago

10.3390/vaccines8010081

Tick-Borne Encephalitis Virus Vaccines Contain Non-Structural Protein 1 Antigen and May Elicit NS1-Specific Antibody Responses in Vaccinated Individuals
Cited by: 19
Author(s): Jiřı́ Salát, Kamil Mikulášek, Osmany Larralde, Petra Formanová, Aleš Chrdle, Jan Haviernik, Jana Elsterová, Dana Teislerová, Martin Palus, Luděk Eyer, Zbyněk Zdráhal, Juraj Petrík, Daniel Růžek
Software Mentions: 1
Published: over 6 years ago

10.3390/vaccines8020271

Deciphering the Mechanisms of Improved Immunogenicity of Hypochlorous Acid-Treated Antigens in Anti-Cancer Dendritic Cell-Based Vaccines
Cited by: 12
Author(s): Michele Graciotti, Fabio Marino, HuiSong Pak, Petra Baumgaertner, Anne‐Christine Thierry, Johanna Chiffelle, Marta A. S. Perez, Vincent Zoete, Alexandre Harari, Michal Bassani-Sternberg, Lana E. Kandalaft
Software Mentions: 1
Published: about 6 years ago

10.3390/vaccines8030413

Proteomic Analysis of Human Immune Responses to Live-Attenuated Tularemia Vaccine
Cited by: 2
Author(s): Yie‐Hwa Chang, Duc M. Duong, Johannes Goll, David Wood, Travis L. Jensen, Luming Yin, Casey E. Gelber, Nicholas T. Seyfried, Evan J. Anderson, Muktha S. Natrajan, Nadine Rouphael, Robert A. Johnson, Patrick Sanz, Mark J. Mulligan, Daniel F. Hoft
Software Mentions: 1
Published: about 6 years ago

10.1186/s13567-016-0345-x

Serum-derived exosomes from non-viremic animals previously exposed to the porcine respiratory and reproductive virus contain antigenic viral proteins
Cited by: 34
Author(s): Sergio Montaner-Tarbes, Francesc E. Borràs, María Montoya, Lorenzo Fraile, Hernando A. del Portillo
Software Mentions: 1
Published: about 10 years ago

10.1186/s12985-017-0783-8

Quantitative phosphoproteome on the silkworm (Bombyx mori) cells infected with baculovirus
Cited by: 12
Author(s): Jauharotus Shobahah, Shifeng Xue, Dongbing Hu, Chen Zhao, Ming Wei, Yanping Quan, Wengong Yu
Software Mentions: 1
Published: about 9 years ago

10.1186/s12985-017-0815-4

A novel method for transmitting southern rice black-streaked dwarf virus to rice without insect vector
Cited by: 4
Author(s): Lu Yu, Jing Shi, Li Cao, Guoping Zhang, Wenli Wang, Deyu Hu, Baoan Song
Software Mentions: 1
Published: about 9 years ago

10.1080/21505594.2017.1370174

Analysis of the early cellular and humoral responses of Galleria mellonella larvae to infection by Candida albicans
Cited by: 55
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: almost 9 years ago

10.1080/21505594.2020.1806675

A DUF4148 family protein produced inside RAW264.7 cells is a critical Burkholderia pseudomallei virulence factor
Cited by: 2
Author(s): Susan L. Welkos, Irma I. Blanco, Udoka Okaro, Jennifer Chua, David DeShazer
Software Mentions: 1
Published: almost 6 years ago

10.1080/21505594.2020.1770482

TMT-based quantitative proteomics analysis reveals the attenuated replication mechanism of Newcastle disease virus caused by nuclear localization signal mutation in viral matrix protein
Cited by: 16
Author(s): Zhiqiang Duan, Chao Yuan, Yang Han, Longhu Zhou, Jianjian Zhao, Yuhua Ruan, Jiaqi Chen, Mingkang Ni, Xinqin Ji
Software Mentions: 1
Published: about 6 years ago

10.3390/v8100281

Hepatitis B Virus Protein X Induces Degradation of Talin-1
Cited by: 14
Author(s): Maarten van de Klundert, Maartje van den Biggelaar, Neeltje A. Kootstra, Hans L. Zaaijer
Software Mentions: 1
Published: almost 10 years ago

10.3390/v9020037

Evaluation of Rice Resistance to Southern Rice Black-Streaked Dwarf Virus and Rice Ragged Stunt Virus through Combined Field Tests, Quantitative Real-Time PCR, and Proteome Analysis
Cited by: 9
Author(s): Zhenchao Wang, Lu Yu, Linhong Jin, Wenli Wang, Qi Zhao, Longlu Ran, Xiangyang Li, Zhuo Chen, Rong Guo, Yongtian Wei, Zhiyong Yang, Enlong Liu, Deyu Hu, Baoan Song
Software Mentions: 1
Published: over 9 years ago

10.3390/v11090870

Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera frugiperda
Cited by: 2
Author(s): Laetitia Pigeyre, Malvina Schatz, Marc Ravallec, Laila Gasmi, Nicolas Nègre, Cécile Clouet, Martial Séveno, Khadija El Koulali, Mathilde Decourcelle, Yann Guérardel, Didier Cot, Thierry Dupressoir, Anne-Sophie Gosselin-Grenet, Mylène Ogliastro
Software Mentions: 1
Published: almost 7 years ago

10.3390/v12060635

Persistent Innate Immune Stimulation Results in IRF3-Mediated but Caspase-Independent Cytostasis
Cited by: 9
Author(s): Christian Urban, Hendrik Welsch, Katharina Heine, Sandra Wüst, Darya A. Haas, Christopher Dächert, Anurag Pandey, Andreas Pichlmair, Marco Binder
Software Mentions: 1
Published: about 6 years ago

10.3390/v12080797

A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection
Cited by: 4
Author(s): Marie-Laurence Lemay, Sandra Maaß, Andreas Otto, Jérémie Hamel, Pier-Luc Plante, Geneviève M. Rousseau, Denise M. Tremblay, Rong Shi, Jacques Corbeil, Stéphane M. Gagné, Dörte Becher, Sylvain Moineau
Software Mentions: 1
Published: about 6 years ago

10.12688/wellcomeopenres.11958.2

Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children
Cited by: 2
Author(s): James M. Njunge, Ian N. Oyaro, Nelson Kibinge, Martin K. Rono, Symon M. Kariuki, Charles R. Newton, James A. Berkley, Evelyn Gitau
Software Mentions: 1
Published: almost 9 years ago

10.12688/wellcomeopenres.14392.1

Proteome-wide analysis of protein abundance and turnover remodelling during oncogenic transformation of human breast epithelial cells
Cited by: 16
Author(s): Tony Ly, Akira Endo, Alejandro Brenes, Marek Gierliński, Vackar Afzal, Andrea Pawellek, Angus I. Lamond
Software Mentions: 1
Published: over 8 years ago

10.1017/S0031182020002425

Differences in mitochondrial NADH dehydrogenase activities in trypanosomatids
Cited by: 10
Author(s): Petra Čermáková, Anna Maďarová, Péter Baráth, Jana Bellová, Vyacheslav Yurchenko, Anton Horváth
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-020-04477-5

The intracellular bacterium Rickettsia rickettsii exerts an inhibitory effect on the apoptosis of tick cells
Cited by: 9
Author(s): Larissa Almeida Martins, Giuseppe Palmisano, Mauro Cortéz, Rebeca Kawahara, José Mário de Freitas Balanco, André Fujita, Beatriz Iglesias Alonso, Darci Moraes Barros-Battesti, Glória R.C. Braz, Lucas Tirloni, Eliane Esteves, Sirlei Daffre, Andréa Cristina Fogaça
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-021-04734-1

Serum proteomic profiling in patients with advanced Schistosoma japonicum-induced hepatic fibrosis
Cited by: 6
Author(s): Jing Huang, Xiaonan Yin, Lifang Zhang, Ming Yao, Dali Wei, Yiming Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-016-1714-z

A proteomics approach reveals molecular manipulators of distinct cellular processes in the salivary glands of Glossina m. morsitans in response to Trypanosoma b. brucei infections
Cited by: 12
Author(s): Henry M. Kariithi, Sjef Boeren, Edwin Murungi, Just M. Vlak, Adly M. M. Abd-Alla
Software Mentions: 1
Published: about 10 years ago

10.3390/pathogens8030092

Characterisation of the Major Extracellular Proteases of Stenotrophomoas maltophilia and Their Effects on Pulmonary Antiproteases
Cited by: 9
Author(s): Kevin Molloy, Stephen G. Smith, Gerard Cagney, Eugene Dillon, Catherine M. Greene, Noel G. McElvaney
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.7299

Comparative proteomics analysis reveals the difference during antler regeneration stage between red deer and sika deer
Cited by: 7
Author(s): Hang Su, Xiaolei Tang, Xiaocui Zhang, Li Liu, Jing Li, Daian Pan, Wei-jie Sun, Huinan He, Chonghui Yang, Daqing Zhao, He Zhang, Bin Qi
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.3541

On the tear proteome of the house mouse (Mus musculus musculus) in relation to chemical signalling
Cited by: 22
Author(s): Romana Stopková, Petr Klempt, Barbora Kuntová, Pavel Stopka
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.673

Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites
Cited by: 5
Author(s): José Eduardo Kroll, Sandro J. de Souza, Gustavo Souza
Software Mentions: 1
Published: almost 12 years ago

10.3390/pharmaceutics11100536

The Mechanistic Differences in HLA-Associated Carbamazepine Hypersensitivity
Cited by: 12
Author(s): Gwendolin S. Simper, Lareen Sophi Gräser, Alexander A. Celik, Joachim Kühn, Heike Kunze‐Schumacher, Gia-Gia T Hò, Rainer Blasczyk, Andreas Pich, Christina Bade‐Doeding
Software Mentions: 1
Published: almost 7 years ago

10.1098/rstb.2019.0584

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Cited by: 27
Author(s): Anna K. Fotakis, Sean Dexter Denham, Meaghan Mackie, Miren Iraeta Orbegozo, Dorothea Mylopotamitaki, Shyam Gopalakrishnan, Thomas Sicheritz-Pontén, Jesper V. Olsen, Enrico Cappellini, Guojie Zhang, Axel Christophersen, M. Thomas P. Gilbert, Åshild J. Vågene‬
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-015-0668-1

Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana
Cited by: 29
Author(s): Matthias Nagler, Ella Nukarinen, Wolfram Weckwerth, Thomas Nägele
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.24994

The genomic landscape of human cellular circadian variation points to a novel role for the signalosome
Cited by: 9
Author(s): Ludmila Gaspar, Cédric Howald, Konstantin Popadin, Bert Maier, Daniel Mauvoisin, Ermanno Moriggi, María Gutiérrez‐Arcelus, Emilie Falconnet, Christelle Borel, Dieter Kunz, Achim Kramer, Frédéric Gachon, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis, Steven A. Brown
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-019-1845-4

Comparative proteomic analysis provides novel insights into the regulation mechanism underlying papaya (Carica papaya L.) exocarp during fruit ripening process
Cited by: 8
Author(s): Jiang Bian, Siyan Ou, Ling Xu, Wanyi Mai, Meijun Ye, Haiping Gu, Tao Zhang, Changchun Yuan, Chenjia Shen, Jinxiang Wang, Kaidong Liu
Software Mentions: 1
Published: about 7 years ago

10.3390/nu9090963

Effect of Processing Intensity on Immunologically Active Bovine Milk Serum Proteins
Cited by: 53
Author(s): Tabea Brick, Markus Ege, Sjef Boeren, A. Böck, Erika von Mutius, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-019-2072-8

Quantitative succinyl-proteome profiling of Chinese hickory (Carya cathayensis) during the grafting process
Cited by: 10
Author(s): Huwei Yuan, Juanjuan Chen, Ying Yang, Chenjia Shen, Dongpo Xu, Junfeng Wang, Daoliang Yan, Yi He, Bingsong Zheng
Software Mentions: 1
Published: almost 7 years ago

10.1111/tpj.14918

Unique organization of photosystem II supercomplexes and megacomplexes in Norway spruce
Cited by: 11
Author(s): Roman Kour̂il, Lukáš Nosek, Monika Opatíková, Rameez Arshad, Dmitry A. Semchonok, Ivo Chamrád, René Lenobel, Egbert J. Boekema, Petr Ilı́k
Software Mentions: 1
Published: about 6 years ago

10.1111/tpj.14450

Gene modification by fast‐track recombineering for cellular localization and isolation of components of plant protein complexes
Cited by: 4
Author(s): Zhoubo Hu, Ajit Ghosh, Sara C. Stolze, Mihály Horváth, Bing Bai, Sabine Schaefer, Simone Zündorf, Shanda Liu, Anne Harzen, Mohsen Hajheidari, Tadeusz Sarnowski, Hirofumi Nakagami, Zsuzsa Koncz, Csaba Koncz
Software Mentions: 1
Published: about 7 years ago

10.1111/tpj.13575

Protein sumoylation and phosphorylation intersect in Arabidopsis signaling
Cited by: 25
Author(s): Ella Nukarinen, Konstantin Tomanov, Ionida Ziba, Wolfram Weckwerth, Andreas Bachmair
Software Mentions: 1
Published: about 9 years ago

10.3390/plants9030290

A TMT-Based Quantitative Proteome Analysis to Elucidate the TSWV Induced Signaling Cascade in Susceptible and Resistant Cultivars of Solanum lycopersicum
Cited by: 14
Author(s): Ravi Gupta, Cheol Woo Min, So Wun Kim, Ju Soon Yoo, Ah-Ram Moon, Ah-Young Shin, Suk‐Yoon Kwon, Sun Tae Kim
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10071409

Optimization of Protein Isolation and Label-Free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng
Cited by: 6
Author(s): Truong Van Nguyen, So Wun Kim, Cheol Woo Min, Ravi Gupta, Gi Hyun Lee, Jeong Woo Jang, Divya Rathi, Hye Won Shin, Ju Young Jung, Ick-Hyun Jo, Woo Jong Hong, Ki Hong Jung, Seungill Kim, Yu Jin Kim, Sun Tae Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/plants9070892

Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
Cited by: 10
Author(s): Alexandre Augusto Pereira Firmino, Michał Górka, Alexander Graf, Aleksandra Skirycz, Federico Martínez-Seidel, Kerstin Zander, Joachim Kopka, Olga Beine-Golovchuk
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-018-1419-x

Comparative proteomic analysis of maize (Zea mays L.) seedlings under rice black-streaked dwarf virus infection
Cited by: 17
Author(s): Runqing Yue, Chengpeng Lu, Xiaohua Han, Songlin Guo, Shufeng Yan, Lu Liu, Fu Xiaolei, Nana Chen, Xinhai Guo, Haifeng Chi, Shuanggui Tie
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.1001628

New Insights into Unusual Genetic Disorder Pave the Way for Promising Treatments
Cited by: 0
Author(s): Janelle Weaver
Software Mentions: 1
Published: about 13 years ago

10.1186/s12870-020-02352-0

Low red/far-red ratio as a signal promotes carbon assimilation of soybean seedlings by increasing the photosynthetic capacity
Cited by: 34
Author(s): Feng Yang, Qinlin Liu, Yajiao Cheng, Lingyang Feng, Xiaoling Wu, Yuanfang Fan, Muhammad Ali Raza, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3001302

Proteasome activity contributes to pro-survival response upon mild mitochondrial stress in Caenorhabditis elegans
Cited by: 12
Author(s): Maria Sladowska, Michał Turek, Min-Ji Kim, Krzysztof Drabikowski, Ben Hur Marins Mussulini, Karthik Ganesh Mohanraj, Remigiusz A. Serwa, Ulrike Topf, Agnieszka Chaciñska
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3001144

Quantitative proteome comparison of human hearts with those of model organisms
Cited by: 17
Author(s): Nora Linscheid, Alberto Santos, Peter Noe Poulsen, Robert W. Mills, Kirstine Calloe, Ulrike Leurs, Johan Ziruo Ye, Christian Stolte, Morten B. Thomsen, Bo Hjorth Bentzen, Pia R. Lundegaard, Morten S. Olesen, Lars Juhl Jensen, Jesper V. Olsen, Alicia Lundby
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000264

Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery
Cited by: 55
Author(s): Avnish Patel, Abigail J. Perrin, Helen Flynn, C. Bisson, Chrislaine Withers‐Martinez, Moritz Treeck, Christian Flueck, Giuseppe Nicastro, Stephen R. Martin, Andrés Ramos, Tim‐Wolf Gilberger, Ambrosius P. Snijders, Michael J. Blackman, David A. Baker
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.2002267

A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum
Cited by: 50
Author(s): Florian Fabiani, Thibaud T. Renault, Britta Peters, Tobias Dietsche, Eric Galvez, Alina Guse, Karen Freier, Emmanuelle Charpentier, Till Strowig, Mirita Franz‐Wachtel, Boris Maček, Samuel Wagner, Michael Hensel, Marc Erhardt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.1001856

The RSF1 Histone-Remodelling Factor Facilitates DNA Double-Strand Break Repair by Recruiting Centromeric and Fanconi Anaemia Proteins
Cited by: 40
Author(s): Fabio Pessina, Noel F. Lowndes
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1004325

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level
Cited by: 77
Author(s): Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas, José Manuel Rodrı́guez, Ángela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.37798

Comment on ‘YcgC represents a new protein deacetylase family in prokaryotes’
Cited by: 8
Author(s): Magdalena Kremer, Nora Kuhlmann, Marius Lechner, Linda Baldus, Michael Lammers
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1006291

Multisite Phosphorylation of NuMA-Related LIN-5 Controls Mitotic Spindle Positioning in C. elegans
Cited by: 15
Author(s): Vincent Portegijs, Lars-Eric Fielmich, Matilde Galli, Ruben Schmidt, Javier Muñoz, Tim van Mourik, Anna Akhmanova, Albert J. R. Heck, Mike Boxem, Sander van den Heuvel
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pgen.1003576

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses
Cited by: 54
Author(s): Bork A. Berghoff, Anne Konzer, Nils N. Mank, Mario Looso, Tom Rische, Konrad U. Förstner, Marcus Krüger, Gabriele Klug
Software Mentions: 1
Published: about 13 years ago

10.7554/eLife.37623

Temporal profiling of redox-dependent heterogeneity in single cells
Cited by: 23
Author(s): Meytal Radzinski, Rosi Fassler, Ohad Yogev, William Breuer, Nadav Shai, Jenia Gutin, Sidra Ilyas, Yifat Geffen, Sabina Tsytkin-Kirschenzweig, Yaakov Nahmias, Tommer Ravid, Nir Friedman, Maya Schuldiner, Dana Reichmann
Software Mentions: 1
Published: about 8 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724