cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0205719

Functional abnormalities in induced Pluripotent Stem Cell-derived cardiomyocytes generated from titin-mutated patients with dilated cardiomyopathy
Cited by: 34
Author(s): Revital Schick, Lucy N. Mekies, Yuval Shemer, Binyamin Eisen, Tova Hallas, Ronen Ben Jehuda, Meital Ben-Ari, Ágnes Szántai, Lubna Willi, Rita Shulman, Michael Gramlich, Luna Simona Pane, Ilaria My, Dov Freimark, Marta Murgia, Gianluca Santamaria, Mihaela Gherghiceanu, Michael Arad, Alessandra Moretti
Software Mentions: 1
Published: about 6 years ago

10.1155/2013/245695

Proteomic Profiling of<i>Ex Vivo</i>Expanded CD34-Positive Haematopoetic Cells Derived from Umbilical Cord Blood
Cited by: 6
Author(s): Heiner Falkenberg, Teja Falk Radke, Gesine Kögler, Kai Stühler
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0159747

SILAC-MS Based Characterization of LPS and Resveratrol Induced Changes in Adipocyte Proteomics – Resveratrol as Ameliorating Factor on LPS Induced Changes
Cited by: 17
Author(s): Martha Kampp Nøhr, Toke P Kroager, Kristian W. Sanggaard, Anders Dahl Knudsen, Allan Stensballe, Jan J. Enghild, Jens Ølholm, Bjørn Richelsen, Steen B. Pedersen
Software Mentions: 1
Published: over 8 years ago

10.1155/2016/2809192

Differential Proteomic Analysis of Human Placenta-Derived Mesenchymal Stem Cells Cultured on Normal Tissue Culture Surface and Hyaluronan-Coated Surface
Cited by: 6
Author(s): Tai‐Chee Wong, Ying Hui Chen, Szu Heng Liu, Mairim Alexandra Solís, Yu Chen, Cheng-Yen Chang, Lynn Ling-Huei Huang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0196469

Heat shock proteins expressed in the marsupial Tasmanian devil are potential antigenic candidates in a vaccine against devil facial tumour disease
Cited by: 6
Author(s): Cesar Tovar, Amanda L. Patchett, Vitna Kim, Richard Wilson, Jocelyn M. Darby, A. Bruce Lyons, Gregory M. Woods
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.TIR117.000152

Converging Small Ubiquitin-like Modifier (SUMO) and Ubiquitin Signaling: Improved Methodology Identifies Co-modified Target Proteins
Cited by: 21
Author(s): Sabine A. G. Cuijpers, Edwin Willemstein, Alfred C.O. Vertegaal
Software Mentions: 1
Published: almost 7 years ago

10.1002/sctm.19-0405

Human bone marrow stem/stromal cell osteogenesis is regulated via mechanically activated osteocyte-derived extracellular vesicles
Cited by: 48
Author(s): Kian F. Eichholz, Ian Woods, Mathieu Riffault, Gillian P. Johnson, Michele A. Corrigan, Michelle C. Lowry, Nian Shen, Marie-Noëlle Labour, Kieran Wynne, Lorraine O’Driscoll, David A. Hoey
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0148340

Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry
Cited by: 17
Author(s): Christian Renz, Silke Oeljeklaus, Soeren Grinhagens, Bettina Warscheid, Nils Johnsson, Thomas Gronemeyer
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0240956

LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing
Cited by: 13
Author(s): В. В. Соболев, Alexandre Mezentsev, Rustam H. Ziganshin, А. Г. Соболева, M. Denieva, I. M. Korsunskaya, О. А. Свитич
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0148030

Mycobacterium tuberculosis AtsG (Rv0296c), GlmU (Rv1018c) and SahH (Rv3248c) Proteins Function as the Human IL-8-Binding Effectors and Contribute to Pathogen Entry into Human Neutrophils
Cited by: 9
Author(s): Bożena Dziadek, Anna Brzostek, Marcin Grzybowski, Marek Fol, Agnieszka Krupa, Jakub Kryczka, Przemysław Płociński, Anna Kurdowska, Jarosław Dziadek
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0178533

Multi-level characterization of balanced inhibitory-excitatory cortical neuron network derived from human pluripotent stem cells
Cited by: 27
Author(s): Aishwarya G. Nadadhur, Javier Emperador-Melero, Marieke Meijer, Désireé Schut, Gerbren Jacobs, Ka Wan Li, Johannes Hjorth, Rhiannon M. Meredith, Ruud F. Toonen, Ronald E. van Kesteren, August B. Smit, Matthijs Verhage, Vivi M. Heine
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.O116.065219

A Proteomic Approach to Analyze the Aspirin-mediated Lysine Acetylome
Cited by: 44
Author(s): Michael H. Tatham, Christian Callebaut, Paul Scullion, Ross Wilkie, Nicholas J. Westwood, Lesley A. Stark, Ronald T. Hay
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0178296

Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics
Cited by: 24
Author(s): Angelo Gámez‐Pozo, Lucía Trilla-Fuertes, Guillermo Prado-Vázquez, Cristina Chiva, Rocío López-Vacas, Paolo Nanni, Julia Berges-Soria, Jonas Grossmann, Mariana Díaz-Almirón, Eva Ciruelos, Eduard Sabidó, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0173853

Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos
Cited by: 15
Author(s): Jiezheng Ying, Juan Zhao, Yuxuan Hou, Yifeng Wang, Jian Qiu, Zhiyong Li, Xiaohong Tong, Zhaomei Shi, Jun Zhu, Jian Zhang
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.27267

Targeting the non-canonical roles of PCNA modifies and increases the response to targeted anti-cancer therapy
Cited by: 14
Author(s): Caroline Krogh Søgaard, Anala Nepal, Vesna Petrović, Animesh Sharma, Nina‐Beate Liabakk, Tonje S. Steigedal, Marit Otterlei
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0100692

Comprehensive Identification of SUMO2/3 Targets and Their Dynamics during Mitosis
Cited by: 20
Author(s): Julie Schou, Christian D. Kelstrup, Daniel Hayward, Jesper V. Olsen, Jakob Nilsson
Software Mentions: 1
Published: over 10 years ago

10.7150/thno.38537

PTPN13 induces cell junction stabilization and inhibits mammary tumor invasiveness
Cited by: 10
Author(s): Mohamed Hamyeh, Florence Bernex, Romain M. Larive, Aurélien Naldi, Serge Urbach, Joëlle Simony-Lafontaine, Carole Puech, William Bakhache, Jérôme Solassol, Peter J. Coopman, Wiljan Hendriks, Gilles Freiss
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0125425

Control of Morphological Differentiation of Streptomyces coelicolor A3(2) by Phosphorylation of MreC and PBP2
Cited by: 19
Author(s): Nils Ladwig, Mirita Franz‐Wachtel, Felix Hezel, Boumediene Soufi, Boris Maček, Wolfgang Wohlleben, Günther Muth
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0238037

New label-free methods for protein relative quantification applied to the investigation of an animal model of Huntington Disease
Cited by: 9
Author(s): Flora Cozzolino, Alfredo Landolfi, Ilaria Iacobucci, Vittoria Monaco, Marianna Caterino, Simona Celentano, Chiara Zuccato, Elena Cattaneo, Maria Monti
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0253325

Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves
Cited by: 6
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Geng Li, Kaichang Liu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0140255

Novel Endogenous, Insulin-Stimulated Akt2 Protein Interaction Partners in L6 Myoblasts
Cited by: 6
Author(s): Michael Caruso, Xiangmin Zhang, Dongzhu Ma, Yanzhi Zhao, Yue Qi, Zhengping Yi
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0213025

Keratin 8 is a potential self-antigen in the coronary artery disease immunopeptidome: A translational approach
Cited by: 10
Author(s): Peter M. Mihailovic, Wai Man Lio, Romana Herscovici, Kuang‐Yuh Chyu, Juliana Yano, Xiaoning Zhao, Jianchang Zhou, Bo Zhou, Michael R. Freeman, Wei Yang, Prediman K. Shah, Bojan Cercek, Paul C. Dimayuga
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0135618

The Fibrin Matrix Regulates Angiogenic Responses within the Hemostatic Microenvironment through Biochemical Control
Cited by: 42
Author(s): Ektoras Hadjipanayi, Peer‐Hendrik Kuhn, Philipp Moog, Anna-Theresa Bauer, Haydar Kuekrek, Lilit Mirzoyan, Anja Hummel, Katharina Kirchhoff, Burak Salgin, Sarah von Isenburg, Ulf Dornseifer, Milomir Ninković, Hans‐Günther Machens, Arndt F. Schilling
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0231721

Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal
Cited by: 8
Author(s): Hana Ujčíková, Kristína Cechová, Michal Jágr, Lenka Roubalová, Miroslava Vošahlíková, Petr Svoboda
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0168666

Comparison of Enzymatic Traits between Native and Recombinant Glycine Sarcosine N-Methyltransferase from Methanohalophilus portucalensis FDF1T
Cited by: 0
Author(s): Shu-Jung Lai, Yuchen Deng, Mei‐Chin Lai
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0048702

Nucleolar Protein Trafficking in Response to HIV-1 Tat: Rewiring the Nucleolus
Cited by: 51
Author(s): Mohamed Ali Jarboui, Carlo Bidoia, Elena Woods, Barbara Roe, Kieran Wynne, Giuliano Elia, William W. Hall, Virginie Gautier
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0104103

Large-Scale Proteomics Differentiates Cholesteatoma from Surrounding Tissues and Identifies Novel Proteins Related to the Pathogenesis
Cited by: 12
Author(s): Anders Britze, Rune Isak Dupont Birkler, Niels Gregersen, Therese Ovesen, Johan Palmfeldt
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0134727

Quantitative Analysis of Differential Proteome Expression in Bladder Cancer vs. Normal Bladder Cells Using SILAC Method
Cited by: 17
Author(s): Ganglong Yang, Zhipeng Xu, Wei Lü, Xiang Li, Chao Sun, Jia Guo, Peng Xue, Feng Guan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0253084

GroEL is an immunodominant surface-exposed antigen of Rickettsia typhi
Cited by: 4
Author(s): Jessica Rauch, Jessica Barton, Marcel Kwiatkowski, Malte Wunderlich, Pascal Steffen, Kristin Moderzynski, Stefanie Papp, Katharina Höhn, Hella Schwanke, Susanne Witt, Ulricke Richardt, Ute Mehlhoop, Hartmut Schlüter, Verena Pianka, Bernhard Fleischer, Dennis Tappe, Anke Osterloh
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0084430

Dynamic Changes in Mucus Thickness and Ion Secretion during Citrobacter rodentium Infection and Clearance
Cited by: 45
Author(s): Jenny Gustafsson, Nazanin Navabi, Ana M. Rodríguez-Piñeiro, Ala H. A. Alomran, Pushpa Premaratne, Harvey R. Fernandez, Debashish Banerjee, Henrik Sjövall, Gunnar C. Hansson, Sara K. Lindén
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0199349

Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells
Cited by: 7
Author(s): Barbora Šalovská, Hana Janečková, Ivo Fabrik, Radana Karlíková, Lucie Čecháková, Martin Ondrej, Marek Link, David Friedecký, Aleš Tichý
Software Mentions: 1
Published: over 6 years ago

10.1186/s40478-017-0466-0

Enhanced exosome secretion in Down syndrome brain - a protective mechanism to alleviate neuronal endosomal abnormalities
Cited by: 81
Author(s): Sébastien A. Gauthier, Rocío Pérez‐González, Ajay Sharma, Fang-Ke Huang, Melissa J. Alldred, Monika Pawlik, Gurjinder Kaur, Stephen D. Ginsberg, Thomas A. Neubert
Software Mentions: 1
Published: about 7 years ago

10.1074/mcp.RA120.002320

The Complexity and Dynamics of the Tissue Glycoproteome Associated With Prostate Cancer Progression
Cited by: 35
Author(s): Rebeca Kawahara, Saulo Recuero, Miguel Srougi, Kátia R. M. Leite, Morten Thaysen‐Andersen, Giuseppe Palmisano
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0172481

Characterization of the human aqueous humour proteome: A comparison of the genders
Cited by: 17
Author(s): Natarajan Perumal, Caroline Manicam, Matthias Steinicke, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0155324

Optimization of Liver Decellularization Maintains Extracellular Matrix Micro-Architecture and Composition Predisposing to Effective Cell Seeding
Cited by: 68
Author(s): Panagiotis Maghsoudlou, Fanourios Georgiades, H. R. Smith, À Milan, Panicos Shangaris, Luca Urbani, Stavros Loukogeorgakis, Benedetta Lombardi, Giuseppe Mazza, Charlotte K. Hagen, Neil J. Sebire, Mark Turmaine, Simon Eaton, Alessandro Olivo, Jasminka Godovac‐Zimmermann, Massimo Pinzani, Paul Gissen, Paolo De Coppi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0197659

Alterations in the brain interactome of the intrinsically disordered N-terminal domain of the cellular prion protein (PrPC) in Alzheimer’s disease
Cited by: 17
Author(s): Sarah Ulbrich, Petra Janning, R. Seidel, Jakob Matschke, Anika Gonsberg, Sebastian Jung, Markus Glatzel, Martin Engelhard, Konstanze F. Winklhofer, Jörg Tatzelt
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA119.001455

Anticancer Effect of Deuterium Depleted Water - Redox Disbalance Leads to Oxidative Stress
Cited by: 29
Author(s): Xuepei Zhang, Massimiliano Gaetani, Alexey Chernobrovkin, Roman A. Zubarev
Software Mentions: 1
Published: almost 5 years ago

10.7150/thno.46934

ATF6 aggravates acinar cell apoptosis and injury by regulating p53/AIFM2 transcription in Severe Acute Pancreatitis
Cited by: 35
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Xinggang Yang, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0141527

Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the Species- and Strain-Specific Proteome
Cited by: 25
Author(s): Joerg Doellinger, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0052692

Proteomic Comparison of MCF-7 Tumoursphere and Monolayer Cultures
Cited by: 20
Author(s): Brian J. Morrison, Marcus L. Hastie, Yadveer S. Grewal, Zara C. Bruce, Chris Schmidt, Brent A. Reynolds, Jeffrey J. Gorman, J. Alejandro Lopez
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0142162

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
Cited by: 30
Author(s): Paul A. Stewart, Katja Parapatics, Eric A. Welsh, André C. Müller, Haoyun Cao, Bin Fang, John M. Koomen, Steven Eschrich, Keiryn L. Bennett, Eric B. Haura
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0091380

Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method
Cited by: 20
Author(s): Przemysław Płociński, Daniel Laubitz, Dominik Cysewski, Krystian Stoduś, Katarzyna Kowalska, Andrzej Dziembowski
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-020-07365-5

Proteome-wide and lysine crotonylation profiling reveals the importance of crotonylation in chrysanthemum (Dendranthema grandiforum) under low-temperature
Cited by: 11
Author(s): Ping Lin, Huiru Bai, Ling He, Qiuxiang Huang, Qin-han Zeng, Yuanzhi Pan, Beibei Jiang, Fan Zhang, Lei Zhang, Qinglin Liu
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0183908

Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes
Cited by: 25
Author(s): Julius O. Nyalwidhe, Wojciech J. Grzesik, Tanya C. Burch, Michele L. Semeraro, Tayab Waseem, Ivan Gerling, Raghavendra G. Mirmira, Margaret A. Morris, Jerry L. Nadler
Software Mentions: 1
Published: about 7 years ago

10.1186/s12953-015-0086-1

The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)
Cited by: 29
Author(s): Karlheinz Mann
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep32518

Integrated proteomics and metabolomics analysis of rat testis: Mechanism of arsenic-induced male reproductive toxicity
Cited by: 62
Author(s): Qingyu Huang, Liang Luo, Ambreen Alamdar, Jie Zhang, Liangpo Liu, Meiping Tian, Syed Ali Musstjab Akber Shah Eqani, Heqing Shen
Software Mentions: 1
Published: about 8 years ago

10.1038/srep32511

iTRAQ-based proteomic analysis of plasma reveals abnormalities in lipid metabolism proteins in chronic kidney disease-related atherosclerosis
Cited by: 20
Author(s): Magdalena Łuczak, Dorota Formanowicz, Łukasz Marczak, Joanna Suszyńska-Zajczyk, Elżbieta Pawliczak, Maria Wanic-Kossowska, Maciej Stobiecki
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34255

Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells
Cited by: 71
Author(s): Violette Gautier, Corinne Cayrol, Dorian Farache, Stéphane Roga, Bernard Monsarrat, Odile Burlet‐Schiltz, Anne Gonzalez de Peredo, Jean-Philippe Girard
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35306

Ergothioneine Biosynthesis and Functionality in the Opportunistic Fungal Pathogen, Aspergillus fumigatus
Cited by: 52
Author(s): Kevin J. Sheridan, Beatrix E. Lechner, Grainne O’ Keeffe, Markus A. Keller, Ernst R. Werner, Herbert Lindner, Gary W. Jones, Hubertus Haas, Seán Doyle
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36109

Integrative omics connects N-glycoproteome-wide alterations with pathways and regulatory events in induced pluripotent stem cells
Cited by: 2
Author(s): Putty‐Reddy Sudhir, Madireddy Pavana Kumari, Wei-Ting Hsu, Chein‐Hung Chen, Hung‐Chih Kuo, Chung-Hsuan Chen
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36338

Detailed Analysis of Protein Topology of Extracellular Vesicles–Evidence of Unconventional Membrane Protein Orientation
Cited by: 106
Author(s): Aleksander Cvjetkovic, Su Chul Jang, Barbora Konečná, Johanna L. Höög, Carina Sihlbom, Cecilia Lässer, Jan Lötvall
Software Mentions: 1
Published: about 8 years ago

10.1038/srep37478

Crosstalk among proteome, acetylome and succinylome in colon cancer HCT116 cell treated with sodium dichloroacetate
Cited by: 21
Author(s): Da‐Yuan Zhu, Lidan Hou, Bin Hu, Hang Zhao, Jie Sun, Jianhua Wang, Xiangjun Meng
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep38298

First insight into the proteome landscape of the porcine short posterior ciliary arteries: Key signalling pathways maintaining physiologic functions
Cited by: 9
Author(s): Caroline Manicam, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus, Adrian Gericke
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.69310

Aorta smooth muscle-on-a-chip reveals impaired mitochondrial dynamics as a therapeutic target for aortic aneurysm in bicuspid aortic valve disease
Cited by: 20
Author(s): Mieradilijiang Abudupataer, Shichao Zhu, Shiqiang Yan, Kehua Xu, Jingjing Zhang, Sushan Luo, Wenrui Ma, Md. Fazle Alam, Yuyi Tang, Hui Huang, Nan Chen, Li Wang, Guoquan Yan, Jun Li, Hao Lai, Chunsheng Wang, Kai Zhu, Weijia Zhang
Software Mentions: 1
Published: about 3 years ago

10.1038/srep40756

A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation
Cited by: 50
Author(s): Lucía Pirone, Wendy Xolalpa, Jón Otti Sigurðsson, Juanma Ramírez, Coralia Pérez, Monika González, Ainara Ruiz de Sabando, Félix Elortza, Manuel Sánchez Rodríguez, Ugo Mayor, Jesper V. Olsen, Rosa Barrio, James D. Sutherland
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep40852

Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network
Cited by: 28
Author(s): Jie Gao, Sheng Zhang, Wei He, Xiuhong Shao, Chunyu Li, Wei YueRong, Guiming Deng, Ruibin Kuang, Chunhua Hu, Ganjun Yi, Qiaosong Yang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12953-015-0078-1

Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes
Cited by: 27
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: about 9 years ago

10.1038/srep41408

A novel approach to analyze lysosomal dysfunctions through subcellular proteomics and lipidomics: the case of NPC1 deficiency
Cited by: 89
Author(s): Arun Kumar Tharkeshwar, Jesse Trekker, Wendy Vermeire, Jarne Pauwels, Ragna Sannerud, David A. Priestman, Daniëlle te Vruchte, Katlijn Vints, Pieter Baatsen, Jean-Paul Decuypere, Huiqi Lu, Shaun Martin, Peter Vangheluwe, Johannes V. Swinnen, Liesbet Lagae, Francis Impens, Frances M. Platt, Kris Gevaert, Wim Annaert
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.46740

Misfolded GPI-anchored proteins are escorted through the secretory pathway by ER-derived factors
Cited by: 49
Author(s): Eszter Zavodszky, Ramanujan S. Hegde
Software Mentions: 1
Published: over 5 years ago

10.1186/1477-5956-12-41

Probing SH2-domains using Inhibitor Affinity Purification (IAP)
Cited by: 10
Author(s): Michael Höfener, Stephanie Heinzlmeir, Bernhard Küster, Norbert Sewald
Software Mentions: 1
Published: over 10 years ago

10.1038/srep43858

A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations
Cited by: 19
Author(s): Alexander D. Giddey, Elise de Kock, Kehilwe C. Nakedi, Shaun Garnett, Andrew J. M. Nel, Nelson C. Soares, Jonathan M. Blackburn
Software Mentions: 1
Published: over 7 years ago

10.1038/srep44611

The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2
Cited by: 24
Author(s): Kamil Sklodowski, Janin Riedelsberger, Natalia Raddatz, Gonzalo Riadi, Julio Caballero, Isabelle Chérel, Waltraud X. Schulze, Alexander Graf, Ingo Drèyer
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46455

Quantitative analyses of the global proteome and phosphoproteome reveal the different impacts of propofol and dexmedetomidine on HT22 cells
Cited by: 5
Author(s): Honggang Zhang, Juan Ye, Zhaomei Shi, Chen Bu, Feichao Bao
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2019.101318

Covalent Aurora A regulation by the metabolic integrator coenzyme A
Cited by: 39
Author(s): Yugo Tsuchiya, Dominic P. Byrne, Selena G. Burgess, Jens Bormann, Jovana Baković, Yueyang Huang, Alexander Zhyvoloup, Bess Yi Kun Yu, Sew Y. Peak‐Chew, Trang Tran, Fiona Bellany, Alethea B. Tabor, Aw Edith Chan, Lalitha Guruprasad, O. M. Garifulin, Valeriy Filonenko, Matthias Vonderach, Samantha Ferries, Patrick A. Eyers, John Carroll, Mark Skehel, Richard Bayliss, Patrick A. Eyers, Ivan Gout
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-00841-1

Systematic Synergy of Glucose and GLP-1 to Stimulate Insulin Secretion Revealed by Quantitative Phosphoproteomics
Cited by: 5
Author(s): Jia-shu Tang, Qing-run Li, Jiaming Li, Jiarui Wu, Rong Zeng
Software Mentions: 1
Published: over 7 years ago

10.1186/1477-5956-11-43

Quantitative proteomics reveals regulatory differences in the chondrocyte secretome from human medial and lateral femoral condyles in osteoarthritic patients
Cited by: 35
Author(s): Johan Stenberg, Ulla Rüetschi, Eva Skiöldebrand, Johan Kärrholm, Anders Lindahl
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-017-02362-3

Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
Cited by: 35
Author(s): Magali Lago, Véronique Monteil, Thibaut Douché, Julien Guglielmini, Alexis Criscuolo, Corinne Maufrais, Mariette Matondo, Françoise Norel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03369-6

First comprehensive proteome analysis of lysine crotonylation in seedling leaves of Nicotiana tabacum
Cited by: 49
Author(s): Hangjun Sun, Xiaowei Liu, Fangfang Li, Wei Li, Jing Zhang, Zhixin Xiao, Lili Song, Ying Liu, Fenglong Wang, Jinguang Yang
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2018.101087

Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction
Cited by: 26
Author(s): Kaibo Xie, Christina Bunse, Katrin Marcus, Lars I. Leichert
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-05736-9

TKI-addicted ROS1-rearranged cells are destined to survival or death by the intensity of ROS1 kinase activity
Cited by: 9
Author(s): Hideki Ogura, Yuka Nagatake-Kobayashi, Jun Adachi, Takeshi Tomonaga, Naoya Fujita, Ryohei Katayama
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07999-8

The [PSI +] yeast prion does not wildly affect proteome composition whereas selective pressure exerted on [PSI +] cells can promote aneuploidy
Cited by: 12
Author(s): Patrick H. W. Chan, Lisa Lee, Erin Kim, Tony Hui, Nikolay Stoynov, Roy Nassar, Michelle Moksa, Dale M. Cameron, Martin Hirst, Joerg Gsponer, Thibault Mayor
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07109-8

Differential oxidation of protein-tyrosine phosphatases during zebrafish caudal fin regeneration
Cited by: 10
Author(s): Wei Wu, Alexander James Hale, Simone Lemeer, Jeroen den Hertog
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-08975-y

Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression
Cited by: 13
Author(s): Gyrid Nygaard, Lars Herfindal, Kathrine Sivertsen Åsrud, Ronja Bjørnstad, Reidun Kristin Kopperud, Eystein Oveland, Frode S. Berven, Lene Elisabeth Myhren, Erling A. Høivik, Turid Helen Felli Lunde, Marit Bakke, Stein Ove Døskeland, Frode Selheim
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.36826

BHLHE40, a third transcription factor required for insulin induction of SREBP-1c mRNA in rodent liver
Cited by: 17
Author(s): Jing Tian, Jiaxi Wu, Xiang Chen, Tong Guo, Zhijian J. Chen, Joseph L. Goldstein, Michael S. Brown
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-11643-w

Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry
Cited by: 23
Author(s): Maaike Rijkers, Bart L. van den Eshof, Pieter F. van der Meer, Floris P.J. van Alphen, Dirk de Korte, Frank W.G. Leebeek, Alexander B. Meijer, Jan Voorberg, A.J. Gerard Jansen
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.11466

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Cited by: 161
Author(s): Koray Kırlı, Samir Karaca, Heinz-Jürgen Dehne, Matthias Samwer, Kuan‐Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.redox.2018.11.015

Citrate reduced oxidative damage in stem cells by regulating cellular redox signaling pathways and represent a potential treatment for oxidative stress-induced diseases
Cited by: 22
Author(s): Xiaopei Wu, Hanren Dai, Langlang Liu, Chao Xu, Yi Yin, Jing Yi, Monika Bielec, Yingchao Han, Shipu Li
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-12574-2

Knockout of the epilepsy gene Depdc5 in mice causes severe embryonic dysmorphology with hyperactivity of mTORC1 signalling
Cited by: 38
Author(s): James Hughes, Ruby Dawson, Melinda N Tea, Dale McAninch, Sandra Piltz, Dominique Jackson, Laura Stewart, Michael G. Ricos, Leanne M. Dibbens, Natasha L. Harvey, Paul Q. Thomas
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13027-6

Annexin-enriched osteoblast-derived vesicles act as an extracellular site of mineral nucleation within developing stem cell cultures
Cited by: 47
Author(s): Owen G. Davies, Sophie C. Cox, Richard L. Williams, Dimitra Tsaroucha, Ronan M. Dorrepaal, Mark P. Lewis, Liam M. Grover
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13092-x

Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics
Cited by: 37
Author(s): Takashi Shiromizu, Hideaki Kume, Mimiko Ishida, Jun Adachi, Masayuki Kano, Hisahiro Matsubara, Takeshi Tomonaga
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14078-5

Crosstalk between proteins expression and lysine acetylation in response to patulin stress in Rhodotorula mucilaginosa
Cited by: 16
Author(s): Xizhong Zheng, Qiya Yang, Lina Zhao, Maurice Tibiru Apaliya, Xiaoyun Zhang, Hongyin Zhang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14285-0

Localised genetic heterogeneity provides a novel mode of evolution in dsDNA phages
Cited by: 5
Author(s): Damian Magill, Phillip A. Kucher, В. Н. Крылов, Е. А. Плетенева, John P. Quinn, Leonid Kulakov
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14460-3

Modelling acrylamide acute neurotoxicity in zebrafish larvae
Cited by: 35
Author(s): Eva Prats, Cristian Gómez‐Canela, Shani Ben-Lulu, Tamar Ziv, Francesc Padrós, Daniel Tornero, Natàlia García-Reyero, Romà Tauler, Arie Admon, Demetrio Raldúa
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14477-8

Involvement of the Vitamin D Receptor in Energy Metabolism Revealed by Profiling of Lysine Succinylome of White Adipose Tissue
Cited by: 7
Author(s): Sileny Han, Yan Lou, Yu Fu, Yalin Zhang, Ning Liu, Zuwang Liu, Yanyan Zhou, Juan Kong
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15655-4

Large-scale identification of lysine acetylated proteins in vegetative hyphae of the rice blast fungus
Cited by: 11
Author(s): Xiaomei Sun, Zhigang Li, Huan Liu, Jun Yang, Wenxing Liang, You-Liang Peng, Jinguang Huang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15194-y

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway
Cited by: 49
Author(s): Imke K. Mandemaker, Loes van Cuijk, Roel C. Janssens, Hannes Lans, Karel Bezstarosti, Jan H.J. Hoeijmakers, Jeroen Demmers, Wim Vermeulen, Jürgen A. Marteijn
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15854-z

Proteome-wide identification of lysine 2-hydroxyisobutyrylation reveals conserved and novel histone modifications in Physcomitrella patens
Cited by: 32
Author(s): Zhiming Yu, Jun Ni, Wei Sheng, Zhikun Wang, Yuhuan Wu
Software Mentions: 1
Published: about 7 years ago

10.7150/thno.61832

Multi-omic profiling of plasma reveals molecular alterations in children with COVID-19
Cited by: 25
Author(s): Chong Wang, Xufang Li, Wanshan Ning, Sitang Gong, Fengxia Yang, Chunxiao Fang, Yu Gong, Di Wu, Mingbin Huang, Yujie Gou, Shanshan Fu, Yujie Ren, Ruyi Yang, Yang Qiu, Yu Xue, Yi Xu, Xi Zhou
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.63868

Exocyst-mediated membrane trafficking of the lissencephaly-associated ECM receptor dystroglycan is required for proper brain compartmentalization
Cited by: 6
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Henning Urlaub, Halyna R. Shcherbata
Software Mentions: 1
Published: over 3 years ago

10.3390/toxins9100304

Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates
Cited by: 6
Author(s): Valérie Bouchez, Thibaut Douché, Mélody Dazas, Sophie Delaplane, Mariette Matondo, Julia Chamot‐Rooke, Nicole Guiso
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins10070304

Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles
Cited by: 20
Author(s): Jiangqi Qu, Liping Shen, Meng Zhao, Wentong Li, Chengxia Jia, Hua Zhu, Qingjing Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins11020111

The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro
Cited by: 3
Author(s): Alexis Voegele, Mirko Sadi, Dorothée Raoux-Barbot, Thibaut Douché, Mariette Matondo, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: almost 6 years ago

10.3390/toxins12080500

Evaluation of Antifungal Activity of Naja pallida and Naja mossambica Venoms against Three Candida Species
Cited by: 6
Author(s): Ewelina Kuna, Aleksandra Bocian, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Anna Lewińska, Maciej Wnuk
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12120792

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora
Cited by: 4
Author(s): Olivier Tremblay, Zachary Thow, A. Rod Merrill
Software Mentions: 1
Published: almost 4 years ago

10.1007/s11248-017-0027-0

Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse
Cited by: 2
Author(s): Vı́tězslav Křı́ž, Michaela Krausová, Petra Burešová, Jan Dobeš, Dušan Hrčkulák, Oľga Babošová, Jiří Švec, Vladimír Kořínek
Software Mentions: 1
Published: over 7 years ago

10.1038/tp.2016.224

Proteomic analysis of the postsynaptic density implicates synaptic function and energy pathways in bipolar disorder
Cited by: 48
Author(s): Melanie Föcking, Patrick Dicker, Lorna M. Lopez, Mafdalena Hryniewiecka, Kieran Wynne, James English, Gerard Cagney, David Cotter
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41398-020-01024-9

Integrated phosphoproteomic and metabolomic profiling reveals perturbed pathways in the hippocampus of gut microbiota dysbiosis mice
Cited by: 21
Author(s): Haiyang Wang, Lanxiang Liu, Xuechen Rao, Benhua Zeng, Ying Yu, Chanjuan Zhou, Li Zeng, Peng Zheng, Juncai Pu, Shaohua Xu, Ke Cheng, Hanping Zhang, Ping Ji, Hong Wei, Peng Xie
Software Mentions: 1
Published: about 4 years ago

10.1167/tvst.9.11.16

Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment
Cited by: 7
Author(s): Ebbe Toftgaard Poulsen, Xhevat Lumi, Anders Kragh Hansen, Jan J. Enghild, Goran Petrovski
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.01092-17

The Capacity of <i>Mycobacterium tuberculosis</i> To Survive Iron Starvation Might Enable It To Persist in Iron-Deprived Microenvironments of Human Granulomas
Cited by: 91
Author(s): Krishna Kurthkoti, Hamel Amin, Mohlopheni J. Marakalala, Saleena Ghanny, Selvakumar Subbian, Alexandra Sakatos, Jonathan Livny, Sarah M. Fortune, Michael Berney, G. Marcela Rodríguez
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00959-18

Global Proteomic Changes Induced by the Epstein-Barr Virus Oncoproteins Latent Membrane Protein 1 and 2A
Cited by: 8
Author(s): Robert M. DeKroon, Harsha Gunawardena, Rachel Hood Edwards, Nancy Raab‐Traub
Software Mentions: 1
Published: over 6 years ago

Projects: cran: Andromeda

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