Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Andromeda

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda

Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 1 year ago
3 dependent packages
1,891 downloads last month

Papers Mentioning Andromeda 1,724

10.1038/s41419-020-2523-z
Formate induces a metabolic switch in nucleotide and energy metabolism
Cited by: 28
Author(s): Kristell Oizel, Jacqueline Tait-Mulder, Jorge Fernández-de-Cossio-Díaz, Matthias Pietzke, Holly Brunton, Sérgio Lilla, Sandeep Dhayade, Dimitris Athineos, Giovanny Rodriguez Blanco, David Sumpton, Gillian Mackay, Karen Blyth, Sara Zanivan, Johannes Meiser, Alexei Vazquez
Software Mentions: 1
Published: over 4 years ago
10.1038/s41420-021-00539-4
The proteolytic landscape of cells exposed to non-lethal stresses is shaped by executioner caspases
Cited by: 4
Author(s): Maria del Carmen Conde Rubio, Roman Mylonas, Christian Widmann
Software Mentions: 1
Published: over 3 years ago
10.1038/celldisc.2016.1
Deubiquitylating enzyme USP9x regulates hippo pathway activity by controlling angiomotin protein turnover
Cited by: 33
Author(s): Hung Thanh Nguyen, Diāna Andrējeva, Rajat Gupta, Chunaram Choudhary, Xin Hong, Pieter J.A. Eichhorn, Anand C Loya, Stephen M. Cohen
Software Mentions: 1
Published: over 8 years ago
10.1038/s41421-018-0041-2
RPS3A positively regulates the mitochondrial function of human periaortic adipose tissue and is associated with coronary artery diseases
Cited by: 18
Author(s): Yan Tang, Yi He, Chen Li, Wenjuan Mu, Ying Zou, Conghui Liu, Shuwen Qian, Fuchuang Zhang, Jiabao Pan, Yina Wang, Haiyan Huang, Dongning Pan, Pengyuan Yang, Ju Mei, Rong Zeng, Qi‐Qun Tang
Software Mentions: 1
Published: over 6 years ago
10.1016/j.chom.2012.06.005
Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis
Cited by: 163
Author(s): Matthew L. Jones, Mark O. Collins, David Goulding, Jyoti S. Choudhary, Julian C. Rayner
Software Mentions: 1
Published: over 12 years ago
10.1016/j.cmet.2013.04.010
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
Cited by: 328
Author(s): Sean J. Humphrey, Guang Yang, Pengyi Yang, Daniel J. Fazakerley, Jacqueline Stöckli, Pengyi Yang, David E. James
Software Mentions: 1
Published: over 11 years ago
10.1007/s00018-021-03845-3
The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand release
Cited by: 8
Author(s): Stefan Düsterhöft, Selcan Kahveci-Türköz, Justyna Wozniak, Anke Seifert, Petr Kašpárek, Henrike Ohm, Shixin Liu, Jana Kopkanova, Juliane Lokau, Christoph Garbers, Christian Preisinger, Radislav Sedláček, Matthew Freeman, Andreas Ludwig
Software Mentions: 1
Published: over 3 years ago
10.1016/j.celrep.2020.108235
Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC Degradation
Cited by: 27
Author(s): Timothy K. Soh, Colin Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, C. L. Smith, Edward Emmott, Robin Antrobus, Stephen C. Graham, Michael P. Weekes, Colin M. Crump
Software Mentions: 1
Published: about 4 years ago
10.1016/j.celrep.2016.02.040
Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal Autophagy
Cited by: 56
Author(s): Tian Zhang, Shichen Shen, Jun Qu, Sina Ghaemmaghami
Software Mentions: 1
Published: over 8 years ago
10.1016/j.celrep.2017.03.020
Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome Replication
Cited by: 37
Author(s): Marija Marić, Progya P. Mukherjee, Michael H. Tatham, Ronald T. Hay, Karim Labib
Software Mentions: 1
Published: over 7 years ago
10.1016/j.celrep.2018.09.007
Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
Cited by: 53
Author(s): Tea Kecman, Krzysztof Kuś, Dong-Hyuk Heo, K Duckett, Adrien Birot, Sabrina Liberatori, Shabaz Mohammed, Lucía Geis-Asteggiante, Carol V. Robinson, Lidia Vasiljeva
Software Mentions: 1
Published: about 6 years ago
10.1016/j.celrep.2019.01.027
Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex
Cited by: 27
Author(s): Ye Dee Tay, Marcin Leda, Christos Spanos, Juri Rappsilber, Andrew B. Goryachev, Kenneth E. Sawin
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.celrep.2018.10.104
Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint
Cited by: 11
Author(s): Thomas Wild, Magda Budzowska, Susanne Hellmuth, Susana Eibes, Gopal Karemore, Marin Barišić, Olaf Stemmann, Chunaram Choudhary
Software Mentions: 1
Published: about 6 years ago
10.1016/j.celrep.2018.08.092
Interplay of Histone Marks with Serine ADP-Ribosylation
Cited by: 72
Author(s): Edward Bartlett, Juán José Bonfiglio, Evgeniia Prokhorova, Thomas Colby, Florian Zobel, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: about 6 years ago
10.1038/s41422-020-0294-9
The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm
Cited by: 21
Author(s): Anne Ramat, Maria-Rosa Garcia-Silva, Camille Jahan, Rima Naït-Saïdi, Jérémy Dufourt, Céline Garret, Aymeric Chartier, Julie Cremaschi, Vipul Patel, Mathilde Decourcelle, Amandine Bastide, François Juge, Martine Simonelig
Software Mentions: 1
Published: over 4 years ago
10.1007/s12192-015-0583-2
Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs
Cited by: 67
Author(s): Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, Pierre Goloubinoff
Software Mentions: 1
Published: over 9 years ago
10.1016/j.tcsw.2019.100023
Assembly and disassembly of Aspergillus fumigatus conidial rodlets
Cited by: 25
Author(s): Isabel Valsecchi, Joey Lai, Emmanuel Stephen-Victor, Ariane Pillé, Audrey Beaussart, Victor Lo, Chi L.L. Pham, Vishukumar Aimanianda, Ann H. Kwan, Magalie Duchateau, Quentin Giai Gianetto, Mariette Matondo, Mélanie Lehoux, Donald C. Sheppard, Yves F. Dufrêne, Jagadeesh Bayry, J. Iñaki Guijarro, Margaret Sunde, Jean‐Paul Latgé
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.cels.2017.09.011
A Compendium of Co-regulated Protein Complexes in Breast Cancer Reveals Collateral Loss Events
Cited by: 44
Author(s): Colm J. Ryan, Susan Kennedy, Ilirjana Bajrami, David Matallanas, Christopher J. Lord
Software Mentions: 1
Published: about 7 years ago
10.3390/cells8050512
Characterization of Lipid and Lipid Droplet Metabolism in Human HCC
Cited by: 53
Author(s): Nikolaus Berndt, Johannes Eckstein, Niklas Heucke, Robert Gajowski, Martin Stockmann, David Meierhofer, Hermann‐Georg Holzhütter
Software Mentions: 1
Published: over 5 years ago
10.3390/cells9020267
Q-Cell Glioblastoma Resource: Proteomics Analysis Reveals Unique Cell-States Are Maintained in 3D Culture
Cited by: 11
Author(s): Rochelle C.J. D’Souza, Carolin Offenhäuser, Jasmin Straube, Ulrich Baumgartner, Anja Kordowski, Yuchen Li, Brett W. Stringer, Hamish Alexander, Zarnie Lwin, Po-Ling Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd, Bryan W. Day
Software Mentions: 1
Published: almost 5 years ago
10.3390/cells9112416
BAG3 Proteomic Signature under Proteostasis Stress
Cited by: 14
Author(s): Christof Hiebel, Elisabeth Stürner, Meike Hoffmeister, Georg Tascher, Mario Schwarz, Heike Nagel, Christian Behrends, Christian Münch, Christian Behl
Software Mentions: 1
Published: about 4 years ago
10.3390/cells9112506
Amyloid-β Precursor Protein APP Down-Regulation Alters Actin Cytoskeleton-Interacting Proteins in Endothelial Cells
Cited by: 6
Author(s): Emma Ristori, Vittoria Cicaloni, Laura Salvini, Laura Tinti, Cristina Tinti, Michael Simons, Federico Corti, Sandra Donnini, Marina Ziche
Software Mentions: 1
Published: about 4 years ago
10.3390/cells9091927
FGF2 Inhibits Early Pancreatic Lineage Specification during Differentiation of Human Embryonic Stem Cells
Cited by: 7
Author(s): Rabea Dettmer, Karsten Cirksena, Julia Münchhoff, Jasmin Kresse, Ulf Diekmann, Isabell Niwolik, Falk F. R. Buettner, Ortwin Naujok
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9040847
Structural Similarity with Cholesterol Reveals Crucial Insights into Mechanisms Sustaining the Immunomodulatory Activity of the Mycotoxin Alternariol
Cited by: 19
Author(s): Giorgia Del Favero, Raphaela Maria Mayer, Luca Dellafiora, Lukas Janker, Laura Niederstaetter, Chiara Dall’Asta, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9061517
In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis
Cited by: 17
Author(s): Cheol Woo Min, Joonho Park, Jin‐Woo Bae, Ganesh Kumar Agrawal, Randeep Rakwal, Youngsoo Kim, Pingfang Yang, Sun Tae Kim, Ravi Gupta
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9010227
Establishment and Characterization of Paired Primary Cultures of Human Pancreatic Cancer Cells and Stellate Cells Derived from the Same Tumor
Cited by: 4
Author(s): Manoj Amrutkar, Emma Kristine Larsen, Monica Aasrum, Anette Vefferstad Finstadsveen, Per Arne Andresen, Caroline Verbeke
Software Mentions: 1
Published: almost 5 years ago
10.3390/cells8010023
Commonly Used Pancreatic Stellate Cell Cultures Differ Phenotypically and in Their Interactions with Pancreatic Cancer Cells
Cited by: 24
Author(s): Daniela Lenggenhager, Manoj Amrutkar, Petra Sántha, Monica Aasrum, Matthias Löhr, Ivar P. Gladhaug, Caroline Verbeke
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells10071616
Cockayne Syndrome-Associated CSA and CSB Mutations Impair Ribosome Biogenesis, Ribosomal Protein Stability, and Global Protein Folding
Cited by: 11
Author(s): Mingyue Qiang, Fatima Khalid, Tamara Phan, Christina Ludwig, Karin Scharffetter‐­Kochanek, Sebastian Iben
Software Mentions: 1
Published: over 3 years ago
10.3390/cells8020191
The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells
Cited by: 5
Author(s): J. Nováková, Pavel Talacko, Petr Novák, Karel Vališ
Software Mentions: 1
Published: over 5 years ago
10.3390/cells9122580
Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson’s Disease
Cited by: 13
Author(s): Sarah Plum, Britta Eggers, Stefan Helling, Markus Stepath, Carsten Theiß, Renata Leite, Mariana Molina, Lea T. Grinberg, Peter Riederer, Manfred Gerlach, Caroline May, Katrin Marcus
Software Mentions: 1
Published: almost 4 years ago
10.3390/cells8070765
Comparison of the RNA Content of Extracellular Vesicles Derived from Paracoccidioides brasiliensis and Paracoccidioides lutzii
Cited by: 41
Author(s): Roberta Peres da Silva, Larissa G. V. Longo, Júlia Pinheiro Chagas da Cunha, Tiago J. P. Sobreira, Márcio L. Rodrigues, Helisson Faoro, Samuel Goldenberg, Lysangela Ronalte Alves, Rosana Puccia
Software Mentions: 1
Published: over 5 years ago
10.3390/cells9102269
Breast Cancer-Derived Microparticles Reduce Cancer Cell Adhesion, an Effect Augmented by Chemotherapy
Cited by: 4
Author(s): Dvir Shechter, Michal Harel, Angshuman Mukherjee, Leonel Munoz Sagredo, David Loven, Elad Prinz, Shimrit Avraham, Véronique Orian−Rousseau, Tamar Geiger, Yuval Shaked, Haguy Wolfenson
Software Mentions: 1
Published: about 4 years ago
10.3390/cells10020372
Proteomic Adaptation of Clostridioides difficile to Treatment with the Antimicrobial Peptide Nisin
Cited by: 6
Author(s): Sandra Maaß, Jürgen Bartel, Pierre-Alexander Mücke, Rabea Schlüter, Thomas Sura, Julia Zaschke-Kriesche, Sander H. J. Smits, Dörte Becher
Software Mentions: 1
Published: almost 4 years ago
10.3390/cells9071709
Revealing the Proteome of Motor Cortex Derived Extracellular Vesicles Isolated from Amyotrophic Lateral Sclerosis Human Postmortem Tissues
Cited by: 21
Author(s): Natasha Vassileff, Laura J. Vella, Harinda Rajapaksha, Mitch Shambrook, Amirmohammad Nasiri Kenari, Catriona McLean, Andrew F. Hill, Lesley Cheng
Software Mentions: 1
Published: over 4 years ago
10.1016/j.chembiol.2015.01.003
Global Analysis of Protein N-Myristoylation and Exploration of N-Myristoyltransferase as a Drug Target in the Neglected Human Pathogen Leishmania donovani
Cited by: 71
Author(s): Megan H. Wright, Daniel Paape, Elisabeth M. Storck, Remigiusz A. Serwa, Deborah F. Smith, Edward W. Tate
Software Mentions: 1
Published: over 9 years ago
10.1016/j.chembiol.2015.06.024
Systems Analysis of Protein Fatty Acylation in Herpes Simplex Virus-Infected Cells Using Chemical Proteomics
Cited by: 48
Author(s): Remigiusz A. Serwa, Fernando Abaitua, Eberhard Krause, Edward W. Tate, Peter O’Hare
Software Mentions: 1
Published: over 9 years ago
10.1039/c5sc03207e
A novel quenched fluorescent activity-based probe reveals caspase-3 activity in the endoplasmic reticulum during apoptosis
Cited by: 39
Author(s): Yulia Shaulov-Rotem, Emmanuelle Merquiol, Tommy Weiss-Sadan, Ofra Moshel, Seth J. Salpeter, Doron Shabat, Farnusch Kaschani, Markus Kaiser, Galia Blum
Software Mentions: 1
Published: almost 9 years ago
10.1039/c5sc01699a
Bridged bicyclic peptides as potential drug scaffolds: synthesis, structure, protein binding and stability
Cited by: 31
Author(s): Marco Bartoloni, Xian Jin, M.J. Marcaida, João Banha, Ivan Dibonaventura, Swathi Bongoni, Kathrin Bartho, Olivia Gräbner, Michael Sefkow, Tamis Darbre, Jean‐Louis Reymond
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13148-017-0369-8
PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples
Cited by: 17
Author(s): Roberta Noberini, Rémi Longuespée, Cristina Richichi, Giancarlo Pruneri, Mark Kriegsmann, Giuliana Pelicci, Tiziana Bonaldi
Software Mentions: 1
Published: over 7 years ago
10.1007/s10585-020-10058-8
Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer
Cited by: 4
Author(s): Hannah Voß, M. Wurlitzer, Daniel J Smit, Florian Ewald, Malik Alawi, Michael Spohn, Daniela Indenbirken, Maryam Omidi, Kerstin A. David, Hartmut Juhl, Ronald Simon, Guido Sauter, Lutz Fischer, Jakob R. Izbicki, Mark P. Molloy, Björn Nashan, Hartmut Schlüter, Manfred Jücker
Software Mentions: 1
Published: about 4 years ago
10.1186/s12014-021-09322-0
Quantitative proteomic analysis of aberrant expressed lysine acetylation in gastrointestinal stromal tumors
Cited by: 1
Author(s): Bo Wang, Long Zhao, Zhidong Gao, Jianyuan Luo, Haoran Zhang, Lin Gan, Kewei Jiang, Shan Wang, Yingjiang Ye, Zhanlong Shen
Software Mentions: 1
Published: over 3 years ago
10.1186/s12014-018-9219-8
Proteomic analysis of serum proteins from HIV/AIDS patients with Talaromyces marneffei infection by TMT labeling-based quantitative proteomics
Cited by: 16
Author(s): Yahong Chen, Aiwen Huang, Wen Ao, Zhengwu Wang, Jinjin Yuan, Qing Song, Dali Wei, Hanhui Ye
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12014-019-9241-5
Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls
Cited by: 24
Author(s): Tone Berge, Anna Eriksson, Ina Skaara Brorson, Einar August Høgestøl, Pål Berg‐Hansen, Anne P. Døskeland, Olav Mjaavatten, Steffan Daniël Bos, Hanne F. Harbo, Frode S. Berven
Software Mentions: 1
Published: over 5 years ago
10.1186/s12014-016-9116-y
Identification of potential protein biomarkers for early detection of pregnancy in cow urine using 2D DIGE and label free quantitation
Cited by: 30
Author(s): Preeti Rawat, Shveta Bathla, Rubina Kumari Baithalu, Munna Lal Yadav, Sudarshan Kumar, Syed Azmal Ali, Anurag Tiwari, Masoud Lotfan, Jasmine Naru, Manoj Kumar Jena, Pradip Behere, Ashok Kumar Balhara, Rajesh Vashisth, Inderjeet Singh, Ajay Kumar Dang, Jai K. Kaushik, Tushar Kumar Mohanty, Ashok Kumar Mohanty
Software Mentions: 1
Published: over 8 years ago
10.1186/s12014-019-9249-x
Screening differentially expressed proteins from co-cultured hematopoietic cells and bone marrow-derived stromal cells by quantitative proteomics (SILAC) method
Cited by: 7
Author(s): Rui Li, Yi Wang, Bingxin Li, Hui Wang, Feng Guan, Zengqi Tan, Xiang Li
Software Mentions: 1
Published: over 5 years ago
10.1186/1559-0275-11-27
Identification of psoriatic arthritis mediators in synovial fluid by quantitative mass spectrometry
Cited by: 52
Author(s): Daniela Creţu, Ioannis Prassas, Punit Saraon, Ihor Batruch, Rajiv Gandhi, Eleftherios P. Diamandis, Vinod Chandran
Software Mentions: 1
Published: over 10 years ago
10.1186/s12014-018-9193-1
Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms
Cited by: 13
Author(s): Misol Do, Dohyun Han, Joseph Injae Wang, Hyunsoo Kim, Wooil Kwon, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: over 6 years ago
10.1186/s12014-019-9242-4
Plasma proteomic and autoantibody profiles reveal the proteomic characteristics involved in longevity families in Bama, China
Cited by: 8
Author(s): Shengliang Ye, Li Ma, Rong Zhang, Fengjuan Liu, Peng Jiang, Jun Xu, Haijun Cao, Xi Du, Fen Lin, Lu Cheng, Xuefeng Zhou, Zhihui Shi, Yeheng Liu, Yaojin Huang, Zongkui Wang, Changqing Li
Software Mentions: 1
Published: over 5 years ago
10.1002/cti2.1185
Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid
Cited by: 16
Author(s): Andrew D Foers, Laura F. Dagley, Simon Chatfield, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: almost 5 years ago
10.1002/ctm2.313
Quantitative acetylome analysis reveals histone modifications that may predict prognosis in hepatitis B‐related hepatocellular carcinoma
Cited by: 18
Author(s): Xiaoqiang Chai, Junkang Guo, Rui‐Zhao Dong, Xuan Yang, Chao Deng, Chuan‐Yuan Wei, Jiajie Xu, Weiyu Han, Jia‐Cheng Lu, Chao Gao, Dongmei Gao, Cheng Huang, Aiwu Ke, Shuangqi Li, Huanping Li, Yingming Tian, Zhongkai Gu, Shuxian Liu, Hang Liu, Qilong Chen, Feng Liu, Jian Zhou, Jia Fan, Guo‐Ming Shi, Feizhen Wu, Jia‐Bin Cai
Software Mentions: 1
Published: over 3 years ago
10.1038/s42003-018-0268-3
Representing dynamic biological networks with multi-scale probabilistic models
Cited by: 20
Author(s): Alexander Groß, Barbara Kracher, Johann M. Kraus, Silke D. Kühlwein, Astrid S. Pfister, Sebastian Wiese, Katrin Luckert, Oliver Pötz, Thomas Joos, Dries Van Daele, Luc De Raedt, Michael Kühl, Hans A. Kestler
Software Mentions: 1
Published: almost 6 years ago
10.1038/s42003-019-0570-8
Proteomic profiling of extracellular vesicles allows for human breast cancer subtyping
Cited by: 117
Author(s): Stamatia Rontogianni, Eleni Synadaki, Bohui Li, Marte C. Liefaard, Esther H. Lips, Jelle Wesseling, Wei Wu, Maarten Altelaar
Software Mentions: 1
Published: about 5 years ago
10.1038/s42003-020-0982-5
Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C
Cited by: 19
Author(s): Lena Reimann, Anja N. Schwäble, Anna L. Fricke, Wignand W. D. Mühlhäuser, Yvonne Leber, Keerthika Lohanadan, Martin Puchinger, Sascha Schäuble, Erik Faessler, Heike Wiese, Christa Reichenbach, Bettina L. Knapp, Christian D. Peikert, Friedel Drepper, Udo Hahn, Clemens Kreutz, Peter F.M. van der Ven, Gerald Radziwill, Kristina Djinović-Carugo, Dieter O. Fürst, Bettina Warscheid
Software Mentions: 1
Published: over 4 years ago
10.1080/19420889.2019.1643665
CYRI/ Fam49 Proteins Represent a New Class of Rac1 Interactors
Cited by: 6
Author(s): Jamie Whitelaw, Sérgio Lilla, Nikki R. Paul, Loïc Fort, Sara Zanivan, Laura M. Machesky
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.dib.2016.03.024
Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer
Cited by: 3
Author(s): Nicos Angelopoulos, Justin Stebbing, Yang Xu, Georgios Giamas, Hua Zhang
Software Mentions: 1
Published: over 8 years ago
10.1016/j.dib.2016.02.028
Mass-spectrometry analysis of histone post-translational modifications in pathology tissue using the PAT-H-MS approach
Cited by: 6
Author(s): Roberta Noberini, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Software Mentions: 1
Published: over 8 years ago
10.1016/j.dib.2016.05.023
AHR-dependent changes in the mitochondrial proteome in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 3
Author(s): Hye Jin Hwang, Peter Dornbos, John J. LaPres
Software Mentions: 1
Published: about 8 years ago
10.1016/j.dib.2018.08.037
Phosphoproteome data from abscisic acid and ethylene treated Glycine max leaves
Cited by: 4
Author(s): Ravi Gupta, Cheol Woo Min, Qiong Meng, Tae Hwan Jun, Ganesh Kumar Agrawal, Randeep Rakwal, Sun Tae Kim
Software Mentions: 1
Published: about 6 years ago
10.1016/j.dib.2017.07.012
Quality control and biophysical characterisation data of VanS A
Cited by: 4
Author(s): Charlotte Hughes, Edoardo Longo, Mary K. Phillips‐Jones, Rohanah Hussain
Software Mentions: 1
Published: about 7 years ago
10.1016/j.dib.2016.07.038
Time-course proteomics dataset monitoring HeLa cells subjected to DTT induced endoplasmic reticulum stress
Cited by: 3
Author(s): Zhe Cheng, Justin Rendleman, Christine Vogel
Software Mentions: 1
Published: about 8 years ago
10.1016/j.dib.2019.104125
High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data
Cited by: 5
Author(s): Talita Helen Bombardelli Gomig, Iglenir João Cavalli, Ricardo Lehtonen Rodrigues de Souza, Aline Castro Rodrigues Lucena, Michel Batista, Kelly Cavalcanti Machado, Fabrício Klerynton Marchini, Fábio Albuquerque Marchi, Rubens Silveira de Lima, Cı́cero de Andrade Urban, Luciane R. Cavalli, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: over 5 years ago
10.1016/j.dib.2015.06.015
Proteome-wide dataset generated by iTRAQ-3DLCMS/MS technique for studying the role of FerB protein in oxidative stress in Paracoccus denitrificans
Cited by: 0
Author(s): Vendula Pernikářová, Vojtěch Sedláček, David Potěšil, Iva Procházková, Zbyněk Zdráhal, Pavel Bouchal, Igor Kučera
Software Mentions: 1
Published: about 9 years ago
10.1016/j.dib.2015.10.018
Data for proteomic analysis of ATP-binding proteins and kinase inhibitor target proteins using an ATP probe
Cited by: 1
Author(s): Jun Adachi, Marina Kishida, Shio Watanabe, Yuki Hashimoto, Kazuna Fukamizu, Takeshi Tomonaga
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.dib.2014.08.004
Quantitative analysis of the Escherichia coli proteome
Cited by: 29
Author(s): Jacek R. Wiśniewski, Dariusz Rakus
Software Mentions: 1
Published: almost 10 years ago
10.1016/j.dib.2016.05.013
Proteomics data in support of the quantification of the changes of bovine milk proteins during mammary gland involution
Cited by: 10
Author(s): Irina Boggs, Brad C. Hine, Grant Smolenksi, Kasper Hettinga, Lina Zhang, Thomas T. Wheeler
Software Mentions: 1
Published: about 8 years ago
10.1016/j.dib.2015.09.034
Global proteomic characterization of microdissected estrogen receptor positive breast tumors
Cited by: 1
Author(s): Tommaso De Marchi, Ning Qing Liu, Christoph Sting, Marcel Smid, Mila Tjoa, René B. H. Braakman, Theo M. Luider, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.dib.2018.10.082
Dataset on the comparative proteomic profiling of mouse saliva and serum from wild type versus the dystrophic mdx-4cv mouse model of dystrophinopathy
Cited by: 5
Author(s): Sandra Murphy, Margit Zweyer, Rustam R. Mundegar, Dieter Swandulla, Kay Ohlendieck
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.dib.2016.02.046
Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant
Cited by: 20
Author(s): Lina Zhang, Marita de Waard, Hester Verheijen, Sjef Boeren, Jos A. Hageman, Toon van Hooijdonk, Jacques Vervoort, Johannes B. van Goudoever, Kasper Hettinga
Software Mentions: 1
Published: over 8 years ago
10.1016/j.dib.2018.04.086
Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity
Cited by: 4
Author(s): Shivangi Awasthi, Tapan K. Maity, Benjamin L. Oyler, Xu Zhang, David R. Goodlett, Udayan Guha
Software Mentions: 1
Published: over 6 years ago
10.1016/j.dib.2016.05.073
Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis)
Cited by: 6
Author(s): Katarina Hörnaeus, Julie Guillemant, Jia Mi, Bodil Hernroth, Jonas Bergquist, Sara Bergström Lind
Software Mentions: 1
Published: about 8 years ago
10.1016/j.dib.2016.05.057
Data on the kinetics of in vitro assembled chromatin
Cited by: 2
Author(s): Moritz Völker-Albert, Miriam Caroline Pusch, Andreas Schmidt, Axel Imhof
Software Mentions: 1
Published: about 8 years ago
10.1016/j.dib.2015.06.010
Myristoylation profiling in human cells and zebrafish
Cited by: 9
Author(s): Malgorzata Broncel, Remigiusz A. Serwa, Paulina Ciepla, Eberhard Krause, Margaret J. Dallman, Anthony I. Magee, Edward W. Tate
Software Mentions: 1
Published: about 9 years ago
10.1016/j.dib.2016.08.017
Hepatic SILAC proteomic data from PANDER transgenic model
Cited by: 3
Author(s): Mark G. Athanason, Stanley M. Stevens, Brant R. Burkhardt
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.dib.2016.02.032
Data for global lysine-acetylation analysis in rice (Oryza sativa)
Cited by: 5
Author(s): Ye Xiong, Kai Zhang, Zhongyi Cheng, Guo‐Liang Wang, Wende Liu
Software Mentions: 1
Published: over 8 years ago
10.1016/j.dib.2016.05.060
Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
Cited by: 7
Author(s): Razan Sheta, Florence Roux‐Dalvai, Christina M. Woo, Frédéric Fournier, Sylvie Bourassa, Carolyn R. Bertozzi, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: about 8 years ago
10.1016/j.devcel.2018.03.018
Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase
Cited by: 37
Author(s): Jana Link, Dimitra Paouneskou, Maria Velkova, Anahita Daryabeigi, Triin Laos, Sara Labella, Consuelo Barroso, Sarai Pacheco, Alex Montoya, Holger Kramer, Alexander Woglar, Antoine Baudrimont, Sebastian Mathias Markert, Christian Stigloher, Enrique Martínez-Pérez, Alexander Dammermann, Manfred Alsheimer, Monique Zetka, Verena Jantsch
Software Mentions: 1
Published: over 6 years ago
10.1242/dev.199385
A patient-based medaka <i>alg2</i> mutant as a model for hypo-<i>N</i>-glycosylation
Cited by: 2
Author(s): Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedgen, Christian Thiel, Erdmann Rapp, Thomas Ruppert, Thomas Thumberger, Joachim Wittbrodt
Software Mentions: 1
Published: over 3 years ago
10.3390/diagnostics11060917
Proteomic Exploration of Plasma Exosomes and Other Small Extracellular Vesicles in Pediatric Hodgkin Lymphoma: A Potential Source of Biomarkers for Relapse Occurrence
Cited by: 11
Author(s): Ombretta Repetto, Federica Lovisa, Caterina Elia, Daniel Enderle, Filippo Romanato, Salvatore Buffardi, Alessandra Sala, Marta Pillon, Agostino Steffan, Roberta Burnelli, Lara Mussolin, Maurizio Mascarin, Vallì De Re
Software Mentions: 1
Published: over 3 years ago
10.1242/dmm.040741
SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells
Cited by: 10
Author(s): Daniel N. Itzhak, Francesca Sacco, Nagarjuna Nagaraj, Stefka Tyanova, Matthias Mann, Marta Murgia
Software Mentions: 1
Published: almost 6 years ago
10.1242/dmm.028910
Dynamic changes in the skeletal muscle proteome during denervation-induced atrophy
Cited by: 53
Author(s): Franziska Lang, Sriram Aravamudhan, Hendrik Nolte, Clara Türk, Soraya Hölper, Stefan Müller, Stefan Günther, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.ebiom.2014.10.011
Inhibition of Cyclooxygenase-2 Prevents Chronic and Recurrent Cystitis
Cited by: 83
Author(s): Thomas J. Hannan, Pacita L. Roberts, Terrence E. Riehl, Sjoerd van der Post, Jana Binkley, Drew J. Schwartz, Hiroyuki Miyoshi, Matthias Mack, Reto A. Schwendener, Thomas M. Hooton, Thaddeus S. Stappenbeck, Gunnar C. Hansson, William F. Stenson, Marco Colonna, Ann E. Stapleton, Scott J. Hultgren
Software Mentions: 1
Published: about 10 years ago
10.15252/embj.201694912
Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium
Cited by: 133
Author(s): Steven Reid, Emily Kay, Lisa J. Neilson, Anne Theres Henze, Jens Serneels, Ewan J. McGhee, Sandeep Dhayade, Colin Nixon, John B. G. Mackey, Alice Santi, Karthic Swaminathan, Dimitris Athineos, Vasileios Papalazarou, Francesca Patella, Álvaro Román-Fernández, Yasmin ElMaghloob, Juan R. Hernández-Fernaud, Ralf H. Adams, Shehab Ismail, David M. Bryant, Manuel Salmerón-Sánchez, Laura M. Machesky, Leo M. Carlin, Karen Blyth, Massimiliano Mazzone, Sara Zanivan
Software Mentions: 1
Published: over 7 years ago
10.15252/embj.201899763
Chemical genetic identification of <scp>CDKL</scp> 5 substrates reveals its role in neuronal microtubule dynamics
Cited by: 53
Author(s): Lucas L. Baltussen, Priscilla D. Negraes, Margaux Silvestre, Suzanne Claxton, Max Moeskops, Evangelos Christodoulou, Helen Flynn, Ambrosius P. Snijders, Alysson R. Muotri, Sila K Ultanir
Software Mentions: 1
Published: about 6 years ago
10.15252/embj.2020106177
HDAC6 inhibition restores TDP‐43 pathology and axonal transport defects in human motor neurons with <i>TARDBP</i> mutations
Cited by: 41
Author(s): Raheem Fazal, Steven Boeynaems, Ann Swijsen, Mathias De Decker, Laura Fumagalli, Matthieu Moisse, J. Vanneste, Wenting Guo, Ruben Boon, Thomas Vercruysse, Kristel Eggermont, Bart Swinnen, Jimmy Beckers, Donya Pakravan, Tijs Vandoorne, Pieter Vanden Berghe, Cathérine Verfaillie, Ludo Van Den Bosch, Philip Van Damme
Software Mentions: 1
Published: over 3 years ago
10.15252/embj.2020106188
TPL‐2 kinase induces phagosome acidification to promote macrophage killing of bacteria
Cited by: 13
Author(s): Felix Breyer, Anetta Härtlová, Teresa L. M. Thurston, Helen Flynn, Probir Chakravarty, Julia Janzen, Julien Peltier, Tiaan Heunis, Ambrosius P Snijders, Matthias Trost, Steven C. Ley
Software Mentions: 1
Published: over 3 years ago
10.15252/embj.2019101625
The <i>Arabidopsis</i> Cdk1/Cdk2 homolog <scp>CDKA</scp> ;1 controls chromosome axis assembly during plant meiosis
Cited by: 35
Author(s): Chao Yang, Kostika Sofroni, Erik Wijnker, Yuki Hamamura, Lena Carstens, Hirofumi Harashima, Sara C. Stolze, Daniel Vezon, Liudmila Chelysheva, Zsuzsanna Orbán-Németh, Gaëtan Pochon, Hirofumi Nakagami, Peter Schlögelhofer, Mathilde Grelon, Arp Schnittger
Software Mentions: 1
Published: about 5 years ago
10.15252/embj.201593594
The effects of proteasomal inhibition on synaptic proteostasis
Cited by: 44
Author(s): Vicky Hakim, Laurie D. Cohen, Rina Zuchman, Tamar Ziv, Noam Ziv
Software Mentions: 1
Published: about 8 years ago
10.15252/emmm.202013067
Cysteamine–bicalutamide combination therapy corrects proximal tubule phenotype in cystinosis
Cited by: 18
Author(s): Amer Jamalpoor, Charlotte Agh van Gelder, Fjodor A. Yousef Yengej, Esther A. Zaal, Sante Princiero Berlingerio, Koenraad Veys, Carla Pou Casellas, Koen Voskuil, Khaled Essa, Carola Ammerlaan, Laura Rita Rega, Reini En van der Welle, Marc R. Lilien, Maarten B. Rookmaaker, Hans Clevers, Judith Klumperman, Elena Levtchenko, Celia R. Berkers, Marianne C. Verhaar, Maarten Altelaar, Rosalinde Masereeuw, Manoe J. Janssen
Software Mentions: 1
Published: over 3 years ago
10.15252/emmm.201404461
5‐azacytidine inhibits nonsense‐mediated decay in a <scp>MYC</scp>‐dependent fashion
Cited by: 51
Author(s): Madhuri Bhuvanagiri, Joe Lewis, Kerstin Putzker, Jonas P Becker, Stefan Leicht, Jeroen Krijgsveld, Richa Batra, Brad Turnwald, Bogdan Jovanovic, Christian Hauer, Jana Sieber, Matthias W. Hentze, Andreas E. Kulozik
Software Mentions: 1
Published: about 10 years ago
10.15252/emmm.201809469
Inhibiting MARSs reduces hyperhomocysteinemia‐associated neural tube and congenital heart defects
Cited by: 18
Author(s): Xinyu Mei, Dashi Qi, Ting Zhang, Ying Zhao, Li Jin, Jun‐Li Hou, Jianhua Wang, Yan Lin, Yu Xue, Pingping Zhu, Zexian Liu, Lei Huang, Ji Nie, Shi Wu Wen, Jingyi Ma, Jianhong Ye, Richard H. Finnell, Hexige Saiyin, Hongyan Wang, Jin Zhao, Shimin Zhao, Wei Xu
Software Mentions: 1
Published: almost 5 years ago
10.15252/embr.202050446
Amyloid aggregates accumulate in melanoma metastasis modulating <scp>YAP</scp> activity
Cited by: 19
Author(s): Vittoria Matafora, Francesco Farris, Umberto Restuccia, Simone Tamburri, Giuseppe Martano, Clara Bernardelli, Ana Sofía, Federica Pisati, Francesca Casagrande, Luca Lazzari, Silvia Marsoni, Emanuela Bonoldi, Ángela Bachi
Software Mentions: 1
Published: over 4 years ago
10.15252/embr.202052196
ARHGAP45 controls naïve T‐ and B‐cell entry into lymph nodes and T‐cell progenitor thymus seeding
Cited by: 12
Author(s): Le He, Marie-Pierre Valignat, Lichen Zhang, Léna Gélard, Fanghui Zhang, Valentin Le Guen, Stéphane Audebert, Luc Camoin, Even Fossum, Bjarne Bogen, Hui Wang, Sandrine Henri, Romain Roncagalli, Olivier Théodoly, Yinming Liang, Marie Malissen, Bernard Malissen
Software Mentions: 1
Published: over 3 years ago
10.15252/embr.202050662
FAM111 protease activity undermines cellular fitness and is amplified by gain‐of‐function mutations in human disease
Cited by: 32
Author(s): Saskia Hoffmann, Satyakrishna Pentakota, Andreas Mund, Peter Haahr, Fabian Coscia, Marta Gallo, Matthias Mann, Nicholas M. I. Taylor, Niels Mailand
Software Mentions: 1
Published: over 4 years ago
10.15252/embr.201643534
Brd4‐Brd2 isoform switching coordinates pluripotent exit and Smad2‐dependent lineage specification
Cited by: 22
Author(s): Rosalía Fernández-Alonso, L. S. P. Davidson, Jens Hukelmann, Michael Zengerle, Alan R. Prescott, Angus I. Lamond, A. Ciulli, Gopal P. Sapkota, Greg M. Findlay
Software Mentions: 1
Published: over 7 years ago
10.15252/embr.202050163
USP22 controls necroptosis by regulating receptor‐interacting protein kinase 3 ubiquitination
Cited by: 41
Author(s): Jens Roedig, Lisa Kowald, Thomas Juretschke, Rebekka Karlowitz, Behnaz Ahangarian Abhari, Heiko Roedig, Simone Fulda, Petra Beli, Sjoerd J. L. van Wijk
Software Mentions: 1
Published: almost 4 years ago
10.15252/embr.201541432
A non‐canonical function of Plk4 in centriolar satellite integrity and ciliogenesis through <scp>PCM</scp> 1 phosphorylation
Cited by: 41
Author(s): Akiko Hori, Karin Barnouin, Ambrosius P. Snijders, Takashi Toda
Software Mentions: 1
Published: almost 9 years ago
10.15252/embr.201744810
<scp>SORCS</scp> 1 and <scp>SORCS</scp> 3 control energy balance and orexigenic peptide production
Cited by: 36
Author(s): Aygul Subkhangulova, Anna R. Malik, Guido Hermey, Oliver Popp, Gunnar Dittmar, Thomas Rathjen, Matthew N. Poy, Alexander Stumpf, Prateep Beed, Dietmar Schmitz, Tilman Breiderhoff, Thomas E. Willnow
Software Mentions: 1
Published: almost 7 years ago
10.17179/excli2020-1396
Roles of kininogen-1, basement membrane specific heparan sulfate proteoglycan core protein, and roundabout homolog 4 as potential urinary protein biomarkers in diabetic nephropathy.
Cited by: 3
Author(s): Piyada Na Nakorn, Supitcha Pannengpetch, Patcharee Isarankura-Na-Ayudhya, Chadinee Thippakorn, Ratana Lawung, Nuankanya Sathirapongsasuti, Chagriya Kitiyakara, Piyamitr Sritara, Prin Vathesatogkit, Chartchalerm Isarankura‐Na‐Ayudhya
Software Mentions: 1
Published: almost 5 years ago
10.1080/22221751.2019.1656549
Comprehensive analysis of the lysine acetylome in <i>Aeromonas hydrophila</i> reveals cross-talk between lysine acetylation and succinylation in LuxS
Cited by: 24
Author(s): Lijun Sun, Zujie Yao, Zhuang Guo, Lishan Zhang, Yuqian Wang, Ranran Mao, Yongjun Lin, Yuying Fu, Xiangmin Lin
Software Mentions: 1
Published: almost 6 years ago
10.1111/1462-2920.14620
Differential protein expression during growth on linear versus branched alkanes in the obligate marine hydrocarbon‐degrading bacterium <i>Alcanivorax borkumensis</i> SK2<sup>T</sup>
Cited by: 26
Author(s): Benjamin H. Gregson, Gergana Metodieva, Metodi V. Metodiev, Boyd A. McKew
Software Mentions: 1
Published: over 5 years ago