cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/plants10071409

Optimization of Protein Isolation and Label-Free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng
Cited by: 6
Author(s): Truong Van Nguyen, So Wun Kim, Cheol Woo Min, Ravi Gupta, Gi Hyun Lee, Jeong Woo Jang, Divya Rathi, Hye Won Shin, Ju Young Jung, Ick-Hyun Jo, Woo Jong Hong, Ki Hong Jung, Seungill Kim, Yu Jin Kim, Sun Tae Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/plants9070892

Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
Cited by: 10
Author(s): Alexandre Augusto Pereira Firmino, Michał Górka, Alexander Graf, Aleksandra Skirycz, Federico Martínez-Seidel, Kerstin Zander, Joachim Kopka, Olga Beine-Golovchuk
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.1001628

New Insights into Unusual Genetic Disorder Pave the Way for Promising Treatments
Cited by: 0
Author(s): Janelle Weaver
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pbio.3001302

Proteasome activity contributes to pro-survival response upon mild mitochondrial stress in Caenorhabditis elegans
Cited by: 12
Author(s): Maria Sladowska, Michał Turek, Min-Ji Kim, Krzysztof Drabikowski, Ben Hur Marins Mussulini, Karthik Ganesh Mohanraj, Remigiusz A. Serwa, Ulrike Topf, Agnieszka Chaciñska
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3001144

Quantitative proteome comparison of human hearts with those of model organisms
Cited by: 17
Author(s): Nora Linscheid, Alberto Santos, Peter Noe Poulsen, Robert W. Mills, Kirstine Calloe, Ulrike Leurs, Johan Ziruo Ye, Christian Stolte, Morten B. Thomsen, Bo Hjorth Bentzen, Pia R. Lundegaard, Morten S. Olesen, Lars Juhl Jensen, Jesper V. Olsen, Alicia Lundby
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000264

Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery
Cited by: 55
Author(s): Avnish Patel, Abigail J. Perrin, Helen Flynn, C. Bisson, Chrislaine Withers‐Martinez, Moritz Treeck, Christian Flueck, Giuseppe Nicastro, Stephen R. Martin, Andrés Ramos, Tim‐Wolf Gilberger, Ambrosius P. Snijders, Michael J. Blackman, David A. Baker
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.2002267

A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum
Cited by: 50
Author(s): Florian Fabiani, Thibaud T. Renault, Britta Peters, Tobias Dietsche, Eric Galvez, Alina Guse, Karen Freier, Emmanuelle Charpentier, Till Strowig, Mirita Franz‐Wachtel, Boris Maček, Samuel Wagner, Michael Hensel, Marc Erhardt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.1001856

The RSF1 Histone-Remodelling Factor Facilitates DNA Double-Strand Break Repair by Recruiting Centromeric and Fanconi Anaemia Proteins
Cited by: 40
Author(s): Fabio Pessina, Noel F. Lowndes
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1004325

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level
Cited by: 77
Author(s): Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas, José Manuel Rodrı́guez, Ángela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1006291

Multisite Phosphorylation of NuMA-Related LIN-5 Controls Mitotic Spindle Positioning in C. elegans
Cited by: 15
Author(s): Vincent Portegijs, Lars-Eric Fielmich, Matilde Galli, Ruben Schmidt, Javier Muñoz, Tim van Mourik, Anna Akhmanova, Albert J. R. Heck, Mike Boxem, Sander van den Heuvel
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pgen.1003576

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses
Cited by: 54
Author(s): Bork A. Berghoff, Anne Konzer, Nils N. Mank, Mario Looso, Tom Rische, Konrad U. Förstner, Marcus Krüger, Gabriele Klug
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pgen.1006099

Cavin4b/Murcb Is Required for Skeletal Muscle Development and Function in Zebrafish
Cited by: 10
Author(s): Michael P. Housley, Brian Njaine, Filomena Ricciardi, Oliver A. Stone, Soraya Hölper, Marcus Krüger, Sawa Kostin, Didier Y. R. Stainier
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pgen.1005554

Uncovering Hidden Layers of Cell Cycle Regulation through Integrative Multi-omic Analysis
Cited by: 45
Author(s): Ranen Aviner, Anjana Shenoy, Orna Elroy‐Stein, Tamar Geiger
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1004695

The Proteomic Landscape of the Suprachiasmatic Nucleus Clock Reveals Large-Scale Coordination of Key Biological Processes
Cited by: 53
Author(s): Cheng‐Kang Chiang, Neel Mehta, Abhilasha Patel, Peng Zhang, Zhibin Ning, Janice Mayne, Warren Sun, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pgen.1007189

The non-classical nuclear import carrier Transportin 1 modulates circadian rhythms through its effect on PER1 nuclear localization
Cited by: 20
Author(s): Sandra Korge, Bert Maier, Franziska Brüning, Lea Ehrhardt, Thomas Korte, Matthias Mann, Andreas Herrmann, María S. Robles, Achim Kramer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1006629

The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system
Cited by: 54
Author(s): Tobias Sahr, Christophe Rusniok, Francis Impens, Giulia Oliva, Odile Sismeiro, Jean‐Yves Coppée, Carmen Buchrieser
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1009088

Genetic compensation prevents myopathy and heart failure in an in vivo model of Bag3 deficiency
Cited by: 11
Author(s): Federica Diofano, Karolina Weinmann, Isabelle Schneider, Kevin Thiessen, Wolfgang Rottbauer, Steffen Just
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0004837

A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model
Cited by: 20
Author(s): Gwendoline Deslyper, Thomas J. Colgan, Andrew J. Cooper, Celia V. Holland, James C. Carolan
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pntd.0004299

Genomic and Proteomic Studies on the Mode of Action of Oxaboroles against the African Trypanosome
Cited by: 32
Author(s): Deuan C. Jones, Bernardo J. Foth, Michael D. Urbaniak, Stephen Patterson, Han B. Ong, Matthew Berriman, Alan H. Fairlamb
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0006873

Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in DNA replication and noncoding RNA metabolism
Cited by: 25
Author(s): Adriana S. A. Pereira, Murilo Sena Amaral, Elton J. R. Vasconcelos, David S. Pires, Huma Asif, Luis DaSilva, David A. Morales-Vicente, Vitor Coutinho Carneiro, Cláudia Blanes Angeli, Giuseppe Palmisano, Marcelo Rosado Fantappíé, Raymond J. Pierce, João Carlos Setúbal, Sérgio Verjovski-Almeida
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pntd.0008720

High-quality nuclear genome for Sarcoptes scabiei—A critical resource for a neglected parasite
Cited by: 20
Author(s): Pasi K. Korhonen, Robin B. Gasser, Guorong Ma, Tao Wang, Andreas J. Stroehlein, Neil D. Young, Ang C, Danny Fernando, H. Lu, Sara Taylor, Simone Reynolds, Ehtesham Mofiz, Shivashankar H. Najaraj, Harsha Gowda, Anil K. Madugundu, Santosh Renuse, Deborah C. Holt, Akhilesh Pandey, Anthony T. Papenfuss, Katja Fischer
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pntd.0008190

Proteomic analysis of the processes leading to Madurella mycetomatis grain formation in Galleria mellonella larvae
Cited by: 17
Author(s): Gerard Sheehan, Mickey Konings, Wilson Lim, Ahmed Hassan Fahal, Kevin Kavanagh, Wendy W. J. van de Sande
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0001371

The Salivary Secretome of the Tsetse Fly Glossina pallidipes (Diptera: Glossinidae) Infected by Salivary Gland Hypertrophy Virus
Cited by: 21
Author(s): Henry M. Kariithi, İkbal Agah İnce, Sjef Boeren, Adly M. M. Abd-Alla, Andrew G. Parker, Serap Aksoy, Just M. Vlak, Monique M. van Oers
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pntd.0007651

A BONCAT-iTRAQ method enables temporally resolved quantitative profiling of newly synthesised proteins in Leishmania mexicana parasites during starvation
Cited by: 10
Author(s): Karunakaran A. Kalesh, Paul W. Denny
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0006090

Quantitative proteomic analysis of amastigotes from Leishmania (L.) amazonensis LV79 and PH8 strains reveals molecular traits associated with the virulence phenotype
Cited by: 20
Author(s): Eloiza de Rezende, Rebeca Kawahara, Maurício Scavassini Peña, Giuseppe Palmisano, Beatriz S. Stolf
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0006045

Quantitative label-free proteomic analysis of human urine to identify novel candidate protein biomarkers for schistosomiasis
Cited by: 22
Author(s): Olugbenga Samson Onile, Bridget Calder, Nelson C. Soares, Chiaka I. Anumudu, Jonathan M. Blackburn
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0005250

Characterisation of Antigen B Protein Species Present in the Hydatid Cyst Fluid of Echinococcus canadensis G7 Genotype
Cited by: 16
Author(s): Ana Maite Folle, Eduardo S. Kitano, Analı́a Lima, Magdalena Gil, Marcela Alejandra Cucher, Gustavo Mourglia‐Ettlin, Leo Kei Iwai, Mara Cecília Rosenzvit, Carlos Batthyány, Ana Maria da Costa Ferreira
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0148407

Circular RNAs Co-Precipitate with Extracellular Vesicles: A Possible Mechanism for circRNA Clearance
Cited by: 291
Author(s): Erika Lasda, Roy Parker
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0174431

Insulin and diet-induced changes in the ubiquitin-modified proteome of rat liver
Cited by: 11
Author(s): Shilpa R. Nagarajan, Amanda E. Brandon, Jessie McKenna, Harrison C. Shtein, Thinh Q. Nguyen, Eurwin Suryana, Philip Poronnik, Gregory J. Cooney, Darren N. Saunders, Andrew J. Hoy
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0126694

Proteomic Investigation of the Response of Enterococcus faecalis V583 when Cultivated in Urine
Cited by: 22
Author(s): Magnus Ø. Arntzen, Ingrid Lea Karlskås, Morten Skaugen, Vincent G. H. Eijsink, Geir Mathiesen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0166306

Enhanced Detection of Low-Abundance Human Plasma Proteins by Integrating Polyethylene Glycol Fractionation and Immunoaffinity Depletion
Cited by: 20
Author(s): Zhao Liu, ST Fan, Haipeng Liu, Jia Yu, Rui Qiao, Mei Zhou, Yongtao Yang, Jian Zhou, Peng Xie
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0215005

Proteomic profiling of ascidians as a tool for biomonitoring marine environments
Cited by: 8
Author(s): Zafrir Kuplik, Lion Novak, Noa Shenkar
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0253254

Influence of collagen and some proteins on gel properties of jellyfish gelatin
Cited by: 15
Author(s): Artima Lueyot, Vilai Rungsardthong, Savitri Vatanyoopaisarn, Pokkwan Hutangura, Benjamaporn Wonganu, Pisit Wongsa‐Ngasri, Sawanya Charoenlappanit, Sittiruk Roytrakul, Benjawan Thumthanaruk
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0219932

Quantitative proteomics reveals TMOD1-related proteins associated with water balance regulation
Cited by: 4
Author(s): Wenjun Wang, Dong Xu, Liang Zhong, Wenxi Zhang, Jiancheng Kang, Jing Zhou, Weibo Ka, Dawei Sun, Xue Xia, Lide Xie, Weijuan Yao
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0213469

Analyzing bioactive effects of the minor hop compound xanthohumol C on human breast cancer cells using quantitative proteomics
Cited by: 22
Author(s): Simon Roehrer, Verena Stork, Christina Ludwig, Mirjana Minceva, Jürgen Behr
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0166494

Proteomic Signatures of Thymomas
Cited by: 8
Author(s): Linan Wang, Owen E. Branson, Konstantin Shilo, Charles L. Hitchcock, Michael A. Freitas
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0218374

Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications
Cited by: 26
Author(s): Søren Heissel, Sigurd J. Frederiksen, Jakob Bunkenborg, Peter Højrup
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0118974

Metabolic Remodeling in Moderate Synchronous versus Dyssynchronous Pacing-Induced Heart Failure: Integrated Metabolomics and Proteomics Study
Cited by: 37
Author(s): Junko Shibayama, Tatiana Yuzyuk, James E. Cox, Aman Makaju, Matt Miller, Justin G. Lichter, Hui Li, Jane D Leavy, Sarah Franklin, Zaĭtsev Av
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0139083

Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells
Cited by: 25
Author(s): Juanma Ramírez, Martínez Amador, Benoît Lectez, So Young Lee, Maribel Franco, Rosa Barrio, Gunnar Dittmar, Ugo Mayor
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0152231

A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins
Cited by: 21
Author(s): Siddarth Soni, A. Raaijmakers, Linsey M. Raaijmakers, Johan Damen, Leonie van Stuijvenberg, Marc A. Vos, Albert J. R. Heck, Toon A.B. van Veen, Arjen Scholten
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0228893

Changes in the proteome of sea urchin Paracentrotus lividus coelomocytes in response to LPS injection into the body cavity
Cited by: 7
Author(s): Luigi Inguglia, Marco Chiaramonte, Vincenzo Arizza, Lilla Turiák, Károly Vékey, László Drahos, Rosa Pitonzo, Giuseppe Avellone, Vita Di Stefano
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0123403

Comparative Proteome Analysis of Multi-Layer Cocoon of the Silkworm, Bombyx mori
Cited by: 33
Author(s): Yan Zhang, Ping Zhao, Dandan Wang, Pengchao Guo, Xiaomeng Guo, Qianru Song, Weiwei Zhang, Qingyou Xia
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0193677

Mobile phone specific electromagnetic fields induce transient DNA damage and nucleotide excision repair in serum-deprived human glioblastoma cells
Cited by: 13
Author(s): Halh Al-Serori, Franziska Ferk, Michael Kundi, Andrea Bileck, Christopher Gerner, Miroslav Mišík, Armen Nersesyan, Monika Waldherr, Manuel Murbach, Tamara T. Lah, Christel Herold‐Mende, Andrew Collins, Siegfried Knasmüller
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0115228

HSP90 Inhibition Enhances Antimitotic Drug-Induced Mitotic Arrest and Cell Death in Preclinical Models of Non-Small Cell Lung Cancer
Cited by: 15
Author(s): Brenda O’Connell, Katie O’Callaghan, Bonnie Tillotson, Mark Douglas, Nafeeza Hafeez, Kip A. West, Howard M. Stern, Janid A. Ali, Paul S. Changelian, Christian Fritz, Vito J. Palombella, Karen McGovern, Jeffery L. Kutok
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0233639

Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes
Cited by: 6
Author(s): Julie A.D. Van, Sergi Clotet-Freixas, Anne-Christin Hauschild, Ihor Batruch, Igor Jurišica, Yesmino Elia, Farid H. Mahmud, Etienne Sochett, Eleftherios P. Diamandis, James W. Scholey, Ana Konvalinka
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0036619

Comparative SILAC Proteomic Analysis of Trypanosoma brucei Bloodstream and Procyclic Lifecycle Stages
Cited by: 149
Author(s): Michael D. Urbaniak, Maria Lucia S. Güther, Michael A. J. Ferguson
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0139591

Malaria Parasite-Infected Erythrocytes Secrete PfCK1, the Plasmodium Homologue of the Pleiotropic Protein Kinase Casein Kinase 1
Cited by: 29
Author(s): Dominique Dorin‐Semblat, Claudia Demarta‐Gatsi, Romain Hamelin, Florence Armand, Teresa G. Carvalho, Marc Moniatte, Christian Doerig
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0025884

A SILAC-Based Screen for Methyl-CpG Binding Proteins Identifies RBP-J as a DNA Methylation and Sequence-Specific Binding Protein
Cited by: 49
Author(s): Stefanie J. J. Bartels, Cornelia G. Spruijt, Arie B. Brinkman, Pascal W.T.C. Jansen, Michiel Vermeulen, Hendrik G. Stunnenberg
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0039494

An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange
Cited by: 15
Author(s): Jiaping Song, Rong Sun, Dazhi Li, Fengji Tan, Xin Li, Pingping Jiang, X. Huang, Liang Lin, Zhiming Deng, Yong Zhang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0050545

Proteomic Investigations of Lysine Acetylation Identify Diverse Substrates of Mitochondrial Deacetylase Sirt3
Cited by: 129
Author(s): E-ri Maria Sol, Sebastian Wagner, Brian T. Weinert, Amit Kumar, Hyun‐Seok Kim, Chu‐Xia Deng, Chunaram Choudhary
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0226235

Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose
Cited by: 5
Author(s): Nagendra Prasad Kurumbang, Jessica M. Vera, Alexander S. Hebert, Joshua J. Coon, Robert Landick
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0058456

Cell Cycle-Regulated Protein Abundance Changes in Synchronously Proliferating HeLa Cells Include Regulation of Pre-mRNA Splicing Proteins
Cited by: 19
Author(s): Karen R. Lane, Yu Yoshida, Patrick E. Lackey, Xian Chen, William F. Marzluff, Jeanette Gowen Cook
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0221024

Urine proteomics study reveals potential biomarkers for the differential diagnosis of cholangiocarcinoma and periductal fibrosis
Cited by: 21
Author(s): Kassaporn Duangkumpha, Thomas Stoll, Jutarop Phetcharaburanin, Puangrat Yongvanit, Raynoo Thanan, Anchalee Techasen, Nisana Namwat, Narong Khuntikeo, Nittaya Chamadol, Sittiruk Roytrakul, Jason Mulvenna, Ahmed Mohamed, Alok K. Shah, Michelle M. Hill, Watcharin Loilome
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0072207

Plant SILAC: Stable-Isotope Labelling with Amino Acids of Arabidopsis Seedlings for Quantitative Proteomics
Cited by: 40
Author(s): Dominika Lewandowska, Sara ten Have, Kelly Hodge, Vinciane Tillemans, Angus I. Lamond, John W. Brown
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0126823

Characterization of the Proteome of Cytoplasmic Lipid Droplets in Mouse Enterocytes after a Dietary Fat Challenge
Cited by: 35
Author(s): Theresa D’Aquila, Devika Sirohi, Jeffrey M. Grabowski, Victoria Hedrick, Lake N. Paul, Andrew S. Greenberg, Richard Kühn, Kimberly K. Buhman
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0182561

A large scale Plasmodium vivax- Saimiri boliviensis trophozoite-schizont transition proteome
Cited by: 16
Author(s): Dave Anderson, Stacey A. Lapp, John W. Barnwell, Mary R. Galinski
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0169862

Nitrosothiol-Trapping-Based Proteomic Analysis of S-Nitrosylation in Human Lung Carcinoma Cells
Cited by: 18
Author(s): Shani Ben-Lulu, Tamar Ziv, Pnina Weisman-Shomer, Moran Benhar
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0215909

Protein expression profiling of plasma and lungs at different stages of metastatic development in a human triple negative breast cancer xenograft model
Cited by: 13
Author(s): Maria K. Tveitarås, Frode Selheim, Kristina Sortland, Rolf K. Reed, Linda Elin Birkhaug Stuhr
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0140100

The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp.
Cited by: 20
Author(s): Juliane Germer, Karlheinz Mann, Gert Wörheide, Daniel J. Jackson
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0162922

DegP Chaperone Suppresses Toxic Inner Membrane Translocation Intermediates
Cited by: 12
Author(s): Esther Braselmann, Julie L. Chaney, Matthew M. Champion, Patricia L. Clark
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0122089

A Multi-Omics Approach Identifies Key Hubs Associated with Cell Type-Specific Responses of Airway Epithelial Cells to Staphylococcal Alpha-Toxin
Cited by: 15
Author(s): Erik A. Richter, Manuela Harms, Katharina Ventz, Philipp Gierok, Ravi Kumar Chilukoti, Jan‐Peter Hildebrandt, Jörg Mostertz, Falko Hochgräfe
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0093305

High-Throughput Quantitative Proteomic Analysis of Dengue Virus Type 2 Infected A549 Cells
Cited by: 52
Author(s): Han-Chen Chiu, Holger Hannemann, Kate J Heesom, David A. Matthews, Andrew D. Davidson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0159580

Microdialysis Sampling from Wound Fluids Enables Quantitative Assessment of Cytokines, Proteins, and Metabolites Reveals Bone Defect-Specific Molecular Profiles
Cited by: 15
Author(s): Yvonne Förster, Johannes R. Schmidt, Dirk K. Wissenbach, Susanne E. M. Pfeiffer, Sven Baumann, Lorenz C. Hofbauer, Martin von Bergen, Stefan Kalkhof, Stefan Rammelt
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0142997

Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach
Cited by: 15
Author(s): Owen P. Leiser, Eric Merkley, Brian H. Clowers, Brooke L. Deatherage Kaiser, Andy Lin, Janine R. Hutchison, Angela M. Melville, David M. Wagner, Paul Keim, Jeffrey T. Foster, Helen Kreuzer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0070698

Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome
Cited by: 179
Author(s): Benoît Vanderperre, Jean-François Lucier, Cyntia Bissonnette, Julie Motard, Guillaume Tremblay, Solène Vanderperre, Maxence Wisztorski, Michel Salzet, François‐Michel Boisvert, Xavier Roucou
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0116710

Bovine Milk Proteome in the First 9 Days: Protein Interactions in Maturation of the Immune and Digestive System of the Newborn
Cited by: 75
Author(s): Lina Zhang, Sjef Boeren, Jos A. Hageman, Toon van Hooijdonk, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0100791

Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae
Cited by: 23
Author(s): Johan Panek, Hicham El Alaoui, Anne Moné, Serge Urbach, Edith Demettre, Catherine Texier, Catherine Brun, Andreas Zanzoni, Éric Peyretaillade, Nicolas Parisot, Emmanuelle Lerat, Pierre Peyret, Frédéric Delbac, David G. Biron
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0205719

Functional abnormalities in induced Pluripotent Stem Cell-derived cardiomyocytes generated from titin-mutated patients with dilated cardiomyopathy
Cited by: 34
Author(s): Revital Schick, Lucy N. Mekies, Yuval Shemer, Binyamin Eisen, Tova Hallas, Ronen Ben Jehuda, Meital Ben-Ari, Ágnes Szántai, Lubna Willi, Rita Shulman, Michael Gramlich, Luna Simona Pane, Ilaria My, Dov Freimark, Marta Murgia, Gianluca Santamaria, Mihaela Gherghiceanu, Michael Arad, Alessandra Moretti
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0159747

SILAC-MS Based Characterization of LPS and Resveratrol Induced Changes in Adipocyte Proteomics – Resveratrol as Ameliorating Factor on LPS Induced Changes
Cited by: 17
Author(s): Martha Kampp Nøhr, Toke P Kroager, Kristian W. Sanggaard, Anders Dahl Knudsen, Allan Stensballe, Jan J. Enghild, Jens Ølholm, Bjørn Richelsen, Steen B. Pedersen
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0196469

Heat shock proteins expressed in the marsupial Tasmanian devil are potential antigenic candidates in a vaccine against devil facial tumour disease
Cited by: 6
Author(s): Cesar Tovar, Amanda L. Patchett, Vitna Kim, Richard Wilson, Jocelyn M. Darby, A. Bruce Lyons, Gregory M. Woods
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0148340

Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry
Cited by: 17
Author(s): Christian Renz, Silke Oeljeklaus, Soeren Grinhagens, Bettina Warscheid, Nils Johnsson, Thomas Gronemeyer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0240956

LC-MS/MS analysis of lesional and normally looking psoriatic skin reveals significant changes in protein metabolism and RNA processing
Cited by: 13
Author(s): В. В. Соболев, Alexandre Mezentsev, Rustam H. Ziganshin, А. Г. Соболева, M. Denieva, I. M. Korsunskaya, О. А. Свитич
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0148030

Mycobacterium tuberculosis AtsG (Rv0296c), GlmU (Rv1018c) and SahH (Rv3248c) Proteins Function as the Human IL-8-Binding Effectors and Contribute to Pathogen Entry into Human Neutrophils
Cited by: 9
Author(s): Bożena Dziadek, Anna Brzostek, Marcin Grzybowski, Marek Fol, Agnieszka Krupa, Jakub Kryczka, Przemysław Płociński, Anna Kurdowska, Jarosław Dziadek
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0178533

Multi-level characterization of balanced inhibitory-excitatory cortical neuron network derived from human pluripotent stem cells
Cited by: 27
Author(s): Aishwarya G. Nadadhur, Javier Emperador-Melero, Marieke Meijer, Désireé Schut, Gerbren Jacobs, Ka Wan Li, Johannes Hjorth, Rhiannon M. Meredith, Ruud F. Toonen, Ronald E. van Kesteren, August B. Smit, Matthijs Verhage, Vivi M. Heine
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0178296

Prediction of adjuvant chemotherapy response in triple negative breast cancer with discovery and targeted proteomics
Cited by: 24
Author(s): Angelo Gámez‐Pozo, Lucía Trilla-Fuertes, Guillermo Prado-Vázquez, Cristina Chiva, Rocío López-Vacas, Paolo Nanni, Julia Berges-Soria, Jonas Grossmann, Mariana Díaz-Almirón, Eva Ciruelos, Eduard Sabidó, Enrique Espinosa, Juan Ángel Fresno Vara
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0173853

Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos
Cited by: 15
Author(s): Jiezheng Ying, Juan Zhao, Yuxuan Hou, Yifeng Wang, Jian Qiu, Zhiyong Li, Xiaohong Tong, Zhaomei Shi, Jun Zhu, Jian Zhang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0100692

Comprehensive Identification of SUMO2/3 Targets and Their Dynamics during Mitosis
Cited by: 20
Author(s): Julie Schou, Christian D. Kelstrup, Daniel Hayward, Jesper V. Olsen, Jakob Nilsson
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0125425

Control of Morphological Differentiation of Streptomyces coelicolor A3(2) by Phosphorylation of MreC and PBP2
Cited by: 19
Author(s): Nils Ladwig, Mirita Franz‐Wachtel, Felix Hezel, Boumediene Soufi, Boris Maček, Wolfgang Wohlleben, Günther Muth
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0238037

New label-free methods for protein relative quantification applied to the investigation of an animal model of Huntington Disease
Cited by: 9
Author(s): Flora Cozzolino, Alfredo Landolfi, Ilaria Iacobucci, Vittoria Monaco, Marianna Caterino, Simona Celentano, Chiara Zuccato, Elena Cattaneo, Maria Monti
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0253325

Systematic analysis of lysine 2-hydroxyisobutyrylation posttranslational modification in wheat leaves
Cited by: 6
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Geng Li, Kaichang Liu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0140255

Novel Endogenous, Insulin-Stimulated Akt2 Protein Interaction Partners in L6 Myoblasts
Cited by: 6
Author(s): Michael Caruso, Xiangmin Zhang, Dongzhu Ma, Yanzhi Zhao, Yue Qi, Zhengping Yi
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0213025

Keratin 8 is a potential self-antigen in the coronary artery disease immunopeptidome: A translational approach
Cited by: 10
Author(s): Peter M. Mihailovic, Wai Man Lio, Romana Herscovici, Kuang‐Yuh Chyu, Juliana Yano, Xiaoning Zhao, Jianchang Zhou, Bo Zhou, Michael R. Freeman, Wei Yang, Prediman K. Shah, Bojan Cercek, Paul C. Dimayuga
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0135618

The Fibrin Matrix Regulates Angiogenic Responses within the Hemostatic Microenvironment through Biochemical Control
Cited by: 42
Author(s): Ektoras Hadjipanayi, Peer‐Hendrik Kuhn, Philipp Moog, Anna-Theresa Bauer, Haydar Kuekrek, Lilit Mirzoyan, Anja Hummel, Katharina Kirchhoff, Burak Salgin, Sarah von Isenburg, Ulf Dornseifer, Milomir Ninković, Hans‐Günther Machens, Arndt F. Schilling
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0231721

Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal
Cited by: 8
Author(s): Hana Ujčíková, Kristína Cechová, Michal Jágr, Lenka Roubalová, Miroslava Vošahlíková, Petr Svoboda
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0168666

Comparison of Enzymatic Traits between Native and Recombinant Glycine Sarcosine N-Methyltransferase from Methanohalophilus portucalensis FDF1T
Cited by: 0
Author(s): Shu-Jung Lai, Yuchen Deng, Mei‐Chin Lai
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0048702

Nucleolar Protein Trafficking in Response to HIV-1 Tat: Rewiring the Nucleolus
Cited by: 51
Author(s): Mohamed Ali Jarboui, Carlo Bidoia, Elena Woods, Barbara Roe, Kieran Wynne, Giuliano Elia, William W. Hall, Virginie Gautier
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0104103

Large-Scale Proteomics Differentiates Cholesteatoma from Surrounding Tissues and Identifies Novel Proteins Related to the Pathogenesis
Cited by: 12
Author(s): Anders Britze, Rune Isak Dupont Birkler, Niels Gregersen, Therese Ovesen, Johan Palmfeldt
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0134727

Quantitative Analysis of Differential Proteome Expression in Bladder Cancer vs. Normal Bladder Cells Using SILAC Method
Cited by: 17
Author(s): Ganglong Yang, Zhipeng Xu, Wei Lü, Xiang Li, Chao Sun, Jia Guo, Peng Xue, Feng Guan
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0253084

GroEL is an immunodominant surface-exposed antigen of Rickettsia typhi
Cited by: 4
Author(s): Jessica Rauch, Jessica Barton, Marcel Kwiatkowski, Malte Wunderlich, Pascal Steffen, Kristin Moderzynski, Stefanie Papp, Katharina Höhn, Hella Schwanke, Susanne Witt, Ulricke Richardt, Ute Mehlhoop, Hartmut Schlüter, Verena Pianka, Bernhard Fleischer, Dennis Tappe, Anke Osterloh
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0084430

Dynamic Changes in Mucus Thickness and Ion Secretion during Citrobacter rodentium Infection and Clearance
Cited by: 45
Author(s): Jenny Gustafsson, Nazanin Navabi, Ana M. Rodríguez-Piñeiro, Ala H. A. Alomran, Pushpa Premaratne, Harvey R. Fernandez, Debashish Banerjee, Henrik Sjövall, Gunnar C. Hansson, Sara K. Lindén
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0199349

Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells
Cited by: 7
Author(s): Barbora Šalovská, Hana Janečková, Ivo Fabrik, Radana Karlíková, Lucie Čecháková, Martin Ondrej, Marek Link, David Friedecký, Aleš Tichý
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0172481

Characterization of the human aqueous humour proteome: A comparison of the genders
Cited by: 17
Author(s): Natarajan Perumal, Caroline Manicam, Matthias Steinicke, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0155324

Optimization of Liver Decellularization Maintains Extracellular Matrix Micro-Architecture and Composition Predisposing to Effective Cell Seeding
Cited by: 68
Author(s): Panagiotis Maghsoudlou, Fanourios Georgiades, H. R. Smith, À Milan, Panicos Shangaris, Luca Urbani, Stavros Loukogeorgakis, Benedetta Lombardi, Giuseppe Mazza, Charlotte K. Hagen, Neil J. Sebire, Mark Turmaine, Simon Eaton, Alessandro Olivo, Jasminka Godovac‐Zimmermann, Massimo Pinzani, Paul Gissen, Paolo De Coppi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0197659

Alterations in the brain interactome of the intrinsically disordered N-terminal domain of the cellular prion protein (PrPC) in Alzheimer’s disease
Cited by: 17
Author(s): Sarah Ulbrich, Petra Janning, R. Seidel, Jakob Matschke, Anika Gonsberg, Sebastian Jung, Markus Glatzel, Martin Engelhard, Konstanze F. Winklhofer, Jörg Tatzelt
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0141527

Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the Species- and Strain-Specific Proteome
Cited by: 25
Author(s): Joerg Doellinger, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0052692

Proteomic Comparison of MCF-7 Tumoursphere and Monolayer Cultures
Cited by: 20
Author(s): Brian J. Morrison, Marcus L. Hastie, Yadveer S. Grewal, Zara C. Bruce, Chris Schmidt, Brent A. Reynolds, Jeffrey J. Gorman, J. Alejandro Lopez
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0142162

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
Cited by: 30
Author(s): Paul A. Stewart, Katja Parapatics, Eric A. Welsh, André C. Müller, Haoyun Cao, Bin Fang, John M. Koomen, Steven Eschrich, Keiryn L. Bennett, Eric B. Haura
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0091380

Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method
Cited by: 20
Author(s): Przemysław Płociński, Daniel Laubitz, Dominik Cysewski, Krystian Stoduś, Katarzyna Kowalska, Andrzej Dziembowski
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0183908

Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes
Cited by: 25
Author(s): Julius O. Nyalwidhe, Wojciech J. Grzesik, Tanya C. Burch, Michele L. Semeraro, Tayab Waseem, Ivan Gerling, Raghavendra G. Mirmira, Margaret A. Morris, Jerry L. Nadler
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0147586

Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum)
Cited by: 66
Author(s): Weibo Jin, Fuyong Wu
Software Mentions: 1
Published: over 10 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724