cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/antibiotics8040248

Proteomic and Metabolomic Analyses of a Tea-Tree Oil-Selected Staphylococcus aureus Small Colony Variant
Cited by: 4
Author(s): Nathanial Torres, Steven D. Hartson, Janet Rogers, John E. Gustafson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-71634-2

Quantitative proteomic analysis of the tizoxanide effect in vero cells
Cited by: 5
Author(s): Kristie Aimi Yamamoto, Kevin Blackburn, Edimilson Migowski, Michael B. Goshe, Dennis T. Brown, Davis Fernandes Ferreira, Márcia Regina Soares
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71712-5

High-resolution proteomics reveals differences in the proteome of spelt and bread wheat flour representing targets for research on wheat sensitivities
Cited by: 13
Author(s): Muhammad Afzal, Jens Pfannstiel, Julia Zimmermann, Stephan C. Bischoff, Tobias Würschum, C. Friedrich H. Longin
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71491-z

Membrane disruption, but not metabolic rewiring, is the key mechanism of anticancer-action of FASN-inhibitors: a multi-omics analysis in ovarian cancer
Cited by: 11
Author(s): Thomas W. Grunt, Astrid Slany, Mariya Semkova, Ramón Colomer, María L. López‐Rodríguez, Michael Wuczkowski, Renate Wagner, Christopher Gerner, Gerald Stübiger
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71950-7

Connectivity mapping of glomerular proteins identifies dimethylaminoparthenolide as a new inhibitor of diabetic kidney disease
Cited by: 13
Author(s): Julie Klein, Cécile Caubet, Mylène Camus, Manousos Makridakis, Colette Denis, Marion Gilet, Guylène Feuillet, Simon Rascalou, Eric Neau, Luc Garrigues, Olivier Thillaye du Boullay, Harald Mischak, Bernard Monsarrat, Odile Burlet‐Schiltz, Antonia Vlahou, Jean Sébastien Saulnier-Blache, Jean-Loup Bascands, Joost P. Schanstra
Software Mentions: 1
Published: about 6 years ago

10.1155/2019/3950628

Quantitative Proteomic Analysis Reveals the Deregulation of Nicotinamide Adenine Dinucleotide Metabolism and CD38 in Inflammatory Bowel Disease
Cited by: 47
Author(s): Longgui Ning, Siyu Guo, Zeyu Sun, Fenming Zhang, Chengfu Xu, Xinhe Lou, Sha Li, Haojie Du, Hongtan Chen, Guofan Xu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-72391-y

Yeast Ppz1 protein phosphatase toxicity involves the alteration of multiple cellular targets
Cited by: 18
Author(s): Diego Velázquez, Marcel Albacar, Chunyi Zhang, Carlos Calafí, María López-Malo, Javier Torres‐Torronteras, Ramón Martí, Sergey I. Kovalchuk, Benoı̂t Pinson, Ole N. Jensen, Antonio Casamayor, Joaquı́n Ariño
Software Mentions: 1
Published: about 6 years ago

10.1155/2014/916212

Power of Proteomics in Linking Oxidative Stress and Female Infertility
Cited by: 73
Author(s): Sajal Gupta, Jana Ghulmiyyah, Rakesh K. Sharma, Jessica El Halabi, Ashok Agarwal
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.16262

Glutaminase inhibitor CB-839 synergizes with carfilzomib in resistant multiple myeloma cells
Cited by: 90
Author(s): Ravyn M. Thompson, Dominik Dytfeld, Leticia Reyes, Reeder M. Robinson, Brittany M. Curtiss, Yefim Manevich, Andrzej Jakubowiak, Mieczysław Komarnicki, Anna Przybyłowicz-Chalecka, Tomasz Szczepaniak, Amit Mitra, Brian G. Van Ness, Magdalena Łuczak, Nathan G. Dolloff
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.11794

Cytoskeleton-centric protein transportation by exosomes transforms tumor-favorable macrophages
Cited by: 55
Author(s): Zhipeng Chen, Lijuan Yang, Yizhi Cui, Yanlong Zhou, Xinhua Yin, Jiahui Guo, Gong Zhang, Tong Wang, Qing‐Yu He
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-78557-y

Comparative proteomic analysis of the sweetpotato provides insights into response mechanisms to Fusarium oxysporum f. sp. batatas
Cited by: 4
Author(s): Shu‐Fang Lin, Zhijian Yang, Bifang Huang, Chuyun Bi, Xiaofang Huang, GuoTai Chen, Nuerla Nijiati, XuanYang Chen
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-79049-9

DEAD-box RNA helicase protein DDX21 as a prognosis marker for early stage colorectal cancer with microsatellite instability
Cited by: 8
Author(s): Atsushi Tanaka, Julia Y. Wang, Jinru Shia, Yihua Zhou, Masakata Ogawa, Ronald C. Hendrickson, David S. Klimstra, Michael H. A. Roehrl
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-80120-8

In-depth blood proteome profiling analysis revealed distinct functional characteristics of plasma proteins between severe and non-severe COVID-19 patients
Cited by: 72
Author(s): Joonho Park, Hyeyoon Kim, So Yeon Kim, Yeonjae Kim, Hyukmin Lee, Kisoon Dan, Moon Woo Seong, Dohyun Han
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-79378-9

Octenidine-based hydrogel shows anti-inflammatory and protease-inhibitory capacities in wounded human skin
Cited by: 18
Author(s): Saskia Seiser, Lukas Janker, Nina Zila, Michael Mildner, Ana Rakita, Johannes Matiasek, Andrea Bileck, Christopher Gerner, Verena Paulitschke, Adelheid Elbe‐Bürger
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-79580-9

Molecular basis of the interaction of the human tyrosine phosphatase PTPN3 with the hepatitis B virus core protein
Cited by: 9
Author(s): Mariano Genera, Barbara Quioc-Salomon, Antonin Nourisson, Baptiste Colcombet-Cazenave, Ahmed Haouz, A.E. Mechaly, Mariette Matondo, Magalie Duchateau, Alexander König, Marc P. Windisch, Christine Neuveut, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: over 5 years ago

10.1016/j.biomaterials.2018.05.032

Neighboring cells override 3D hydrogel matrix cues to drive human MSC quiescence
Cited by: 33
Author(s): Sandra Reis Ferreira, Peter Faull, Alexis J. Seymour, Tracy T. L. Yu, Sandra Loaiza, Holger W. Auner, Ambrosius P. Snijders, Eileen Gentleman
Software Mentions: 1
Published: about 8 years ago

10.3390/biology10010058

Does KRAS Play a Role in the Regulation of Colon Cancer Cells-Derived Exosomes?
Cited by: 2
Author(s): Shu Kee Eng, Ilma Ruzni Imtiaz, Bey Hing Goh, Long Chiau Ming, Ya Chee Lim, Wai Leng Lee
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83169-1

The multifunctional role of SPANX-A/D protein subfamily in the promotion of pro-tumoural processes in human melanoma
Cited by: 2
Author(s): Itziar Urizar-Arenaza, Aitor Benedicto, Arantza Perez‐Valle, Nerea Osinalde, Vyacheslav Akimov, Iraia Muñoa-Hoyos, José Antonio Rodriguez, Aintzane Asumendi, María Dolores Boyano, Blagoy Blagoev, Irina Kratchmarova, Nerea Subirán
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83666-3

Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells
Cited by: 8
Author(s): Kiall F. Suazo, Angela Jeong, Mina Ahmadi, Caroline Brown, Wenhui Qu, Ling Li, Mark D. Distefano
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84385-5

An integrated transcriptomic and proteomic approach to identify the main Torymus sinensis venom components
Cited by: 15
Author(s): Carmen Scieuzo, Rosanna Salvia, Antonio Franco, Marco Pezzi, Flora Cozzolino, Milvia Chicca, Chiara Scapoli, Heiko Vogel, Maria Monti, Chiara Ferracini, Pietro Pucci, Alberto Alma, Patrizia Falabella
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.12513

Phosphoproteomics reveals ALK promote cell progress via RAS/JNK pathway in neuroblastoma
Cited by: 12
Author(s): Kai Chen, Fan Lv, Guofeng Xu, Min Zhang, Zhixiang Wu
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-85004-z

Protein network analyses of pulmonary endothelial cells in chronic thromboembolic pulmonary hypertension
Cited by: 8
Author(s): Sarath Babu Nukala, Olga Tura-Ceide, Giancarlo Aldini, Valérie F. E. D. Smolders, Isabel Blanco, Víctor I. Peinado, Manuel Castellà, Joan Albert Barberà, Alessandra Altomare, Giovanna Baron, Marina Carini, Marta Cascante, Alfonsina D’Amato
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85879-y

Global analysis of lysine 2-hydroxyisobutyrylation in wheat root
Cited by: 5
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Chunhua Gao, Li Geng, Kong Ling'an
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85988-8

Comparative proteomic profiling of newly acquired, virulent and attenuated Neoparamoeba perurans proteins associated with amoebic gill disease
Cited by: 3
Author(s): Kerrie Ní Dhufaigh, Eugene Dillon, Natasha A. Botwright, Anita Talbot, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87003-6

Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer
Cited by: 5
Author(s): Alberto Valdés, Athanasios Bitzios, Eszter Kassa, Ganna Shevchenko, Alexander Falk, Per‐Uno Malmström, Anca Dragomir, Ulrika Segersten, Sara Bergström Lind
Software Mentions: 1
Published: over 5 years ago

10.1186/s40659-021-00327-5

Proteome profiling of different rat brain regions reveals the modulatory effect of prolonged maternal separation on proteins involved in cell death-related processes
Cited by: 6
Author(s): Zdeňka Drastichová, Vladimı́r Rudajev, Gergely Pallag, Jiřı́ Novotný
Software Mentions: 1
Published: over 5 years ago

10.1186/s12575-016-0043-0

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients
Cited by: 48
Author(s): Maria Hernandez-Valladares, Elise Aasebø, Olav Mjaavatten, Marc Vaudel, Øystein Bruserud, Frode S. Berven, Frode Selheim
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-89597-3

The proteome of the human endolymphatic sac endolymph
Cited by: 4
Author(s): Christine Ölander, Jesper Edvardsson Rasmussen, Per Eriksson, Göran Laurell, Helge Rask‐Andersen, Jonas Bergquist
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-91664-8

Characterization of hyperglycemia due to sub-chronic administration of red ginseng extract via comparative global proteomic analysis
Cited by: 2
Author(s): Ann-Yae Na, Jung Jae Jo, Oh Kwang Kwon, Piljoung Cho, Yan Gao, Ju-Hyun Kim, Kyu Min Kim, Sung Hwan Ki, Sangkyu Lee
Software Mentions: 1
Published: over 5 years ago

10.1042/BCJ20160502

TLR and TNF-R1 activation of the MKK3/MKK6–p38α axis in macrophages is mediated by TPL-2 kinase
Cited by: 50
Author(s): Michael J. Pattison, Olivia Mitchell, Helen Flynn, Chao-Sheng Chen, Huei-Ting Yang, Hakem Ben-Addi, Stefan Boeing, Ambrosius P Snijders, Steve Ley
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-90149-y

Next generation proteomics with drug sensitivity screening identifies sub-clones informing therapeutic and drug development strategies for multiple myeloma patients
Cited by: 6
Author(s): Ciara Tierney, Despina Bazou, Muntasir Mamun Majumder, Pekka Anttila, Raija Silvennoinen, Caroline A. Heckman, Paul Dowling, Peter O’Gorman
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-92433-3

Identification of cis-acting determinants mediating the unconventional secretion of tau
Cited by: 11
Author(s): Taxiarchis Katsinelos, William A. McEwan, Thomas R. Jahn, Walter Nickel
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22010462

The Thyroid Hormone Transporter Mct8 Restricts Cathepsin-Mediated Thyroglobulin Processing in Male Mice through Thyroid Auto-Regulatory Mechanisms That Encompass Autophagy
Cited by: 5
Author(s): Vaishnavi Venugopalan, Alaa Al-Hashimi, Maren Rehders, Janine Golchert, Vivien Reinecke, Georg Homuth, Uwe Völker, Mythili Manirajah, Alae Touzani, Jonas Weber, Matthew Bogyo, François Verrey, Eva K. Wirth, Ulrich Schweizer, Heike Heuer, Janine Kirstein, Klaudia Brix
Software Mentions: 1
Published: almost 6 years ago

10.1042/BCJ20180043

Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
Cited by: 54
Author(s): Yugo Tsuchiya, Alexander Zhyvoloup, Jovana Baković, Naam Thomas, Bess Yi Kun Yu, Sayoni Das, Christine Orengo, Clare L. Newell, John M. Ward, Giorgio Saladino, Federico Comitani, Francesco Luigi Gervasio, О. М. Маланчук, А. И. Хоруженко, Valeriy Filonenko, Sew Y. Peak‐Chew, Mark Skehel, Ivan Gout
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-021-95354-3

A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing
Cited by: 5
Author(s): Xin Liu, Ye Zhang, Lucas D. Ward, Qinghong Yan, Tanggis Bohnuud, Roberto Hernández, Socheata Lao, Jing Yuan, Fan Fan
Software Mentions: 1
Published: about 5 years ago

10.1186/s12888-020-02540-0

Comparison of serum protein profiles between major depressive disorder and bipolar disorder
Cited by: 26
Author(s): Sang Jin Rhee, Dohyun Han, Yunna Lee, Hye Young Kim, Junhee Lee, Kangeun Lee, Hyunsuk Shin, Hyeyoon Kim, Tae Young Lee, Minah Kim, Se Hyun Kim, Yong Min Ahn, Jun Soo Kwon, Kyooseob Ha
Software Mentions: 1
Published: over 6 years ago

10.1100/2012/749281

Identification of Xylem Occlusions Occurring in CutClematis(ClematisL., fam.RanunculaceaeJuss.) Stems during Their Vase Life
Cited by: 12
Author(s): Agata Jędrzejuk, Julia Rochala, J. Zakrzewski, J. Rabiza-Świder
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12870-015-0668-1

Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana
Cited by: 29
Author(s): Matthias Nagler, Ella Nukarinen, Wolfram Weckwerth, Thomas Nägele
Software Mentions: 1
Published: almost 11 years ago

10.3390/antibiotics10020116

Staphylococcus aureus Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral Biofilm
Cited by: 7
Author(s): Etyene Schnurr, Pune Nina Paqué, Thomas Attin, Paolo Nanni, Jonas Grossmann, Silva Holtfreter, Barbara M. Bröker, Christian Köhler, Binh An Diep, Apoena de Aguiar Ribeiro, Thomas Thurnheer
Software Mentions: 1
Published: over 5 years ago

10.1080/21541248.2018.1564472

The CDC42 effector protein MRCKβ autophosphorylates on Threonine 1108
Cited by: 5
Author(s): Mathieu Unbekandt, Sérgio Lilla, Sara Zanivan, Michael F. Olson
Software Mentions: 1
Published: over 7 years ago

10.1186/s40064-015-1248-4

Use of ROV for assessing marine litter on the seafloor of Saronikos Gulf (Greece): a way to fill data gaps and deliver environmental education
Cited by: 26
Author(s): Christos Ioakeimidis, George Papatheodorou, Georgia Fermeli, N. Streftaris, E. Papathanassiou
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms22041747

Label-Free Quantitative Phosphoproteomics of the Fission Yeast Schizosaccharomyces pombe Using Strong Anion Exchange- and Porous Graphitic Carbon-Based Fractionation Strategies
Cited by: 5
Author(s): Barbara Siváková, Jan Jurcik, Veronika Lukáčová, Tomas Selicky, Ingrid Čipáková, Péter Baráth, Luboš Čipák
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-019-1356-0

Human adipose liquid extract induces angiogenesis and adipogenesis: a novel cell-free therapeutic agent
Cited by: 29
Author(s): Yunfan He, Jing Xia, Hsinkai Chen, Liangyue Wang, Chao Deng, Feng Lu
Software Mentions: 1
Published: about 7 years ago

10.1186/s13287-020-01943-w

UBA2 activates Wnt/β-catenin signaling pathway during protection of R28 retinal precursor cells from hypoxia by extracellular vesicles derived from placental mesenchymal stem cells
Cited by: 11
Author(s): Kyungmin Koh, Soo‐Jin Park, Eun Soo Bae, Van-An Duong, Jong Park, Hookeun Lee, Helen Lew
Software Mentions: 1
Published: about 6 years ago

10.1186/s13287-020-02062-2

Uncovering the secretome of mesenchymal stromal cells exposed to healthy, traumatic, and degenerative intervertebral discs: a proteomic analysis
Cited by: 33
Author(s): Sebastian Wangler, Amir Kamali, Christina Wapp, Karin Wuertz‐Kozak, Sonja Häckel, Claudia Fortes, Lorin Michael Benneker, Lisbet Haglund, R. Geoff Richards, Mauro Alini, Marianna Peroglio, Sibylle Grad
Software Mentions: 1
Published: almost 6 years ago

10.1155/2013/245695

Proteomic Profiling ofEx VivoExpanded CD34-Positive Haematopoetic Cells Derived from Umbilical Cord Blood
Cited by: 6
Author(s): Heiner Falkenberg, Teja Falk Radke, Gesine Kögler, Kai Stühler
Software Mentions: 1
Published: almost 14 years ago

10.1155/2016/2809192

Differential Proteomic Analysis of Human Placenta-Derived Mesenchymal Stem Cells Cultured on Normal Tissue Culture Surface and Hyaluronan-Coated Surface
Cited by: 6
Author(s): Tai‐Chee Wong, Ying Hui Chen, Szu Heng Liu, Mairim Alexandra Solís, Yu Chen, Cheng-Yen Chang, Lynn Ling-Huei Huang
Software Mentions: 1
Published: almost 11 years ago

10.1002/sctm.19-0405

Human bone marrow stem/stromal cell osteogenesis is regulated via mechanically activated osteocyte-derived extracellular vesicles
Cited by: 48
Author(s): Kian F. Eichholz, Ian Woods, Mathieu Riffault, Gillian P. Johnson, Michele A. Corrigan, Michelle C. Lowry, Nian Shen, Marie-Noëlle Labour, Kieran Wynne, Lorraine O’Driscoll, David A. Hoey
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms22041766

Detailed Structure and Pathophysiological Roles of the IgA-Albumin Complex in Multiple Myeloma
Cited by: 1
Author(s): Yuki Kawata, Hisashi Hirano, Ren Takahashi, Yukari Miyano, Ayuko Kimura, Noriyosi Sato, Yukio Morita, Hirokazu Kimura, Kiyotaka Fujita
Software Mentions: 1
Published: over 5 years ago

10.7150/thno.38537

PTPN13 induces cell junction stabilization and inhibits mammary tumor invasiveness
Cited by: 10
Author(s): Mohamed Hamyeh, Florence Bernex, Romain M. Larive, Aurélien Naldi, Serge Urbach, Joëlle Simony-Lafontaine, Carole Puech, William Bakhache, Jérôme Solassol, Peter J. Coopman, Wiljan Hendriks, Gilles Freiss
Software Mentions: 1
Published: almost 7 years ago

10.1007/s10456-019-09688-8

Cancer-associated fibroblast-derived WNT2 increases tumor angiogenesis in colon cancer
Cited by: 141
Author(s): Daniela Unterleuthner, Patrick Neuhold, Katharina Schwarz, Lukas Janker, Benjamin Neuditschko, Harini Nivarthi, Ilija Crnčec, Nina Kramer, Christine Unger, Markus Hengstschläger, Robert Eferl, Richard Moriggl, Wolfgang Sommergruber, Christopher Gerner, Helmut Dolznig
Software Mentions: 1
Published: almost 7 years ago

10.7150/thno.46934

ATF6 aggravates acinar cell apoptosis and injury by regulating p53/AIFM2 transcription in Severe Acute Pancreatitis
Cited by: 35
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Xinggang Yang, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: almost 7 years ago

10.7150/thno.61832

Multi-omic profiling of plasma reveals molecular alterations in children with COVID-19
Cited by: 25
Author(s): Chong Wang, Xufang Li, Wanshan Ning, Sitang Gong, Fengxia Yang, Chunxiao Fang, Yu Gong, Di Wu, Mingbin Huang, Yujie Gou, Shanshan Fu, Yujie Ren, Ruyi Yang, Yang Qiu, Yu Xue, Yi Xu, Xi Zhou
Software Mentions: 1
Published: almost 6 years ago

10.1111/acel.13192

The aged hematopoietic system promotes hippocampal‐dependent cognitive decline
Cited by: 15
Author(s): Lucas K. Smith, Evgenia Verovskaya, Gregor Bieri, Alana Horowitz, Saskia N. I. von Ungern‐Sternberg, Karin Lin, Peter Seizer, Emmanuelle Passegué, Saul Villeda
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins9100304

Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates
Cited by: 6
Author(s): Valérie Bouchez, Thibaut Douché, Mélody Dazas, Sophie Delaplane, Mariette Matondo, Julia Chamot‐Rooke, Nicole Guiso
Software Mentions: 1
Published: about 9 years ago

10.3390/toxins10070304

Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles
Cited by: 20
Author(s): Jiangqi Qu, Liping Shen, Meng Zhao, Wentong Li, Chengxia Jia, Hua Zhu, Qingjing Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins11020111

The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro
Cited by: 3
Author(s): Alexis Voegele, Mirko Sadi, Dorothée Raoux-Barbot, Thibaut Douché, Mariette Matondo, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins12080500

Evaluation of Antifungal Activity of Naja pallida and Naja mossambica Venoms against Three Candida Species
Cited by: 6
Author(s): Ewelina Kuna, Aleksandra Bocian, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Anna Lewińska, Maciej Wnuk
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12120792

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora
Cited by: 4
Author(s): Olivier Tremblay, Zachary Thow, A. Rod Merrill
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11248-017-0027-0

Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse
Cited by: 2
Author(s): Vı́tězslav Křı́ž, Michaela Krausová, Petra Burešová, Jan Dobeš, Dušan Hrčkulák, Oľga Babošová, Jiří Švec, Vladimír Kořínek
Software Mentions: 1
Published: over 9 years ago

10.1186/s13071-020-04477-5

The intracellular bacterium Rickettsia rickettsii exerts an inhibitory effect on the apoptosis of tick cells
Cited by: 9
Author(s): Larissa Almeida Martins, Giuseppe Palmisano, Mauro Cortéz, Rebeca Kawahara, José Mário de Freitas Balanco, André Fujita, Beatriz Iglesias Alonso, Darci Moraes Barros-Battesti, Glória R.C. Braz, Lucas Tirloni, Eliane Esteves, Sirlei Daffre, Andréa Cristina Fogaça
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13071-021-04734-1

Serum proteomic profiling in patients with advanced Schistosoma japonicum-induced hepatic fibrosis
Cited by: 6
Author(s): Jing Huang, Xiaonan Yin, Lifang Zhang, Ming Yao, Dali Wei, Yiming Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-016-1714-z

A proteomics approach reveals molecular manipulators of distinct cellular processes in the salivary glands of Glossina m. morsitans in response to Trypanosoma b. brucei infections
Cited by: 12
Author(s): Henry M. Kariithi, Sjef Boeren, Edwin Murungi, Just M. Vlak, Adly M. M. Abd-Alla
Software Mentions: 1
Published: about 10 years ago

10.3390/pathogens8030092

Characterisation of the Major Extracellular Proteases of Stenotrophomoas maltophilia and Their Effects on Pulmonary Antiproteases
Cited by: 9
Author(s): Kevin Molloy, Stephen G. Smith, Gerard Cagney, Eugene Dillon, Catherine M. Greene, Noel G. McElvaney
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.7299

Comparative proteomics analysis reveals the difference during antler regeneration stage between red deer and sika deer
Cited by: 7
Author(s): Hang Su, Xiaolei Tang, Xiaocui Zhang, Li Liu, Jing Li, Daian Pan, Wei-jie Sun, Huinan He, Chonghui Yang, Daqing Zhao, He Zhang, Bin Qi
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.3541

On the tear proteome of the house mouse (Mus musculus musculus) in relation to chemical signalling
Cited by: 22
Author(s): Romana Stopková, Petr Klempt, Barbora Kuntová, Pavel Stopka
Software Mentions: 1
Published: over 9 years ago

10.1038/tp.2016.224

Proteomic analysis of the postsynaptic density implicates synaptic function and energy pathways in bipolar disorder
Cited by: 48
Author(s): Melanie Föcking, Patrick Dicker, Lorna M. Lopez, Mafdalena Hryniewiecka, Kieran Wynne, James English, Gerard Cagney, David Cotter
Software Mentions: 1
Published: almost 10 years ago

10.7717/peerj.673

Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites
Cited by: 5
Author(s): José Eduardo Kroll, Sandro J. de Souza, Gustavo Souza
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41398-020-01024-9

Integrated phosphoproteomic and metabolomic profiling reveals perturbed pathways in the hippocampus of gut microbiota dysbiosis mice
Cited by: 21
Author(s): Haiyang Wang, Lanxiang Liu, Xuechen Rao, Benhua Zeng, Ying Yu, Chanjuan Zhou, Li Zeng, Peng Zheng, Juncai Pu, Shaohua Xu, Ke Cheng, Hanping Zhang, Ping Ji, Hong Wei, Peng Xie
Software Mentions: 1
Published: almost 6 years ago

10.1167/tvst.9.11.16

Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment
Cited by: 7
Author(s): Ebbe Toftgaard Poulsen, Xhevat Lumi, Anders Kragh Hansen, Jan J. Enghild, Goran Petrovski
Software Mentions: 1
Published: almost 6 years ago

10.3390/pharmaceutics11100536

The Mechanistic Differences in HLA-Associated Carbamazepine Hypersensitivity
Cited by: 12
Author(s): Gwendolin S. Simper, Lareen Sophi Gräser, Alexander A. Celik, Joachim Kühn, Heike Kunze‐Schumacher, Gia-Gia T Hò, Rainer Blasczyk, Andreas Pich, Christina Bade‐Doeding
Software Mentions: 1
Published: almost 7 years ago

10.1098/rstb.2019.0584

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus
Cited by: 27
Author(s): Anna K. Fotakis, Sean Dexter Denham, Meaghan Mackie, Miren Iraeta Orbegozo, Dorothea Mylopotamitaki, Shyam Gopalakrishnan, Thomas Sicheritz-Pontén, Jesper V. Olsen, Enrico Cappellini, Guojie Zhang, Axel Christophersen, M. Thomas P. Gilbert, Åshild J. Vågene‬
Software Mentions: 1
Published: about 6 years ago

10.1017/S0031182020002425

Differences in mitochondrial NADH dehydrogenase activities in trypanosomatids
Cited by: 10
Author(s): Petra Čermáková, Anna Maďarová, Péter Baráth, Jana Bellová, Vyacheslav Yurchenko, Anton Horváth
Software Mentions: 1
Published: almost 6 years ago

10.12688/wellcomeopenres.14392.1

Proteome-wide analysis of protein abundance and turnover remodelling during oncogenic transformation of human breast epithelial cells
Cited by: 16
Author(s): Tony Ly, Akira Endo, Alejandro Brenes, Marek Gierliński, Vackar Afzal, Andrea Pawellek, Angus I. Lamond
Software Mentions: 1
Published: over 8 years ago

10.12688/wellcomeopenres.11958.2

Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children
Cited by: 2
Author(s): James M. Njunge, Ian N. Oyaro, Nelson Kibinge, Martin K. Rono, Symon M. Kariuki, Charles R. Newton, James A. Berkley, Evelyn Gitau
Software Mentions: 1
Published: about 9 years ago

10.3390/v12080797

A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection
Cited by: 4
Author(s): Marie-Laurence Lemay, Sandra Maaß, Andreas Otto, Jérémie Hamel, Pier-Luc Plante, Geneviève M. Rousseau, Denise M. Tremblay, Rong Shi, Jacques Corbeil, Stéphane M. Gagné, Dörte Becher, Sylvain Moineau
Software Mentions: 1
Published: about 6 years ago

10.3390/v12060635

Persistent Innate Immune Stimulation Results in IRF3-Mediated but Caspase-Independent Cytostasis
Cited by: 9
Author(s): Christian Urban, Hendrik Welsch, Katharina Heine, Sandra Wüst, Darya A. Haas, Christopher Dächert, Anurag Pandey, Andreas Pichlmair, Marco Binder
Software Mentions: 1
Published: over 6 years ago

10.3390/v11090870

Interaction of a Densovirus with Glycans of the Peritrophic Matrix Mediates Oral Infection of the Lepidopteran Pest Spodoptera frugiperda
Cited by: 2
Author(s): Laetitia Pigeyre, Malvina Schatz, Marc Ravallec, Laila Gasmi, Nicolas Nègre, Cécile Clouet, Martial Séveno, Khadija El Koulali, Mathilde Decourcelle, Yann Guérardel, Didier Cot, Thierry Dupressoir, Anne-Sophie Gosselin-Grenet, Mylène Ogliastro
Software Mentions: 1
Published: about 7 years ago

10.1111/tpj.14918

Unique organization of photosystem II supercomplexes and megacomplexes in Norway spruce
Cited by: 11
Author(s): Roman Kour̂il, Lukáš Nosek, Monika Opatíková, Rameez Arshad, Dmitry A. Semchonok, Ivo Chamrád, René Lenobel, Egbert J. Boekema, Petr Ilı́k
Software Mentions: 1
Published: about 6 years ago

10.1111/tpj.14450

Gene modification by fast‐track recombineering for cellular localization and isolation of components of plant protein complexes
Cited by: 4
Author(s): Zhoubo Hu, Ajit Ghosh, Sara C. Stolze, Mihály Horváth, Bing Bai, Sabine Schaefer, Simone Zündorf, Shanda Liu, Anne Harzen, Mohsen Hajheidari, Tadeusz Sarnowski, Hirofumi Nakagami, Zsuzsa Koncz, Csaba Koncz
Software Mentions: 1
Published: about 7 years ago

10.1111/tpj.13575

Protein sumoylation and phosphorylation intersect in Arabidopsis signaling
Cited by: 25
Author(s): Ella Nukarinen, Konstantin Tomanov, Ionida Ziba, Wolfram Weckwerth, Andreas Bachmair
Software Mentions: 1
Published: over 9 years ago

10.3390/plants9030290

A TMT-Based Quantitative Proteome Analysis to Elucidate the TSWV Induced Signaling Cascade in Susceptible and Resistant Cultivars of Solanum lycopersicum
Cited by: 14
Author(s): Ravi Gupta, Cheol Woo Min, So Wun Kim, Ju Soon Yoo, Ah-Ram Moon, Ah-Young Shin, Suk‐Yoon Kwon, Sun Tae Kim
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10071409

Optimization of Protein Isolation and Label-Free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng
Cited by: 6
Author(s): Truong Van Nguyen, So Wun Kim, Cheol Woo Min, Ravi Gupta, Gi Hyun Lee, Jeong Woo Jang, Divya Rathi, Hye Won Shin, Ju Young Jung, Ick-Hyun Jo, Woo Jong Hong, Ki Hong Jung, Seungill Kim, Yu Jin Kim, Sun Tae Kim
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9070892

Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
Cited by: 10
Author(s): Alexandre Augusto Pereira Firmino, Michał Górka, Alexander Graf, Aleksandra Skirycz, Federico Martínez-Seidel, Kerstin Zander, Joachim Kopka, Olga Beine-Golovchuk
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01092-17

The Capacity of Mycobacterium tuberculosis To Survive Iron Starvation Might Enable It To Persist in Iron-Deprived Microenvironments of Human Granulomas
Cited by: 91
Author(s): Krishna Kurthkoti, Hamel Amin, Mohlopheni J. Marakalala, Saleena Ghanny, Selvakumar Subbian, Alexandra Sakatos, Jonathan Livny, Sarah M. Fortune, Michael Berney, G. Marcela Rodríguez
Software Mentions: 1
Published: about 9 years ago

10.3390/v9020037

Evaluation of Rice Resistance to Southern Rice Black-Streaked Dwarf Virus and Rice Ragged Stunt Virus through Combined Field Tests, Quantitative Real-Time PCR, and Proteome Analysis
Cited by: 9
Author(s): Zhenchao Wang, Lu Yu, Linhong Jin, Wenli Wang, Qi Zhao, Longlu Ran, Xiangyang Li, Zhuo Chen, Rong Guo, Yongtian Wei, Zhiyong Yang, Enlong Liu, Deyu Hu, Baoan Song
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.1001628

New Insights into Unusual Genetic Disorder Pave the Way for Promising Treatments
Cited by: 0
Author(s): Janelle Weaver
Software Mentions: 1
Published: about 13 years ago

10.3390/v8100281

Hepatitis B Virus Protein X Induces Degradation of Talin-1
Cited by: 14
Author(s): Maarten van de Klundert, Maartje van den Biggelaar, Neeltje A. Kootstra, Hans L. Zaaijer
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pbio.3001302

Proteasome activity contributes to pro-survival response upon mild mitochondrial stress in Caenorhabditis elegans
Cited by: 12
Author(s): Maria Sladowska, Michał Turek, Min-Ji Kim, Krzysztof Drabikowski, Ben Hur Marins Mussulini, Karthik Ganesh Mohanraj, Remigiusz A. Serwa, Ulrike Topf, Agnieszka Chaciñska
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3001144

Quantitative proteome comparison of human hearts with those of model organisms
Cited by: 17
Author(s): Nora Linscheid, Alberto Santos, Peter Noe Poulsen, Robert W. Mills, Kirstine Calloe, Ulrike Leurs, Johan Ziruo Ye, Christian Stolte, Morten B. Thomsen, Bo Hjorth Bentzen, Pia R. Lundegaard, Morten S. Olesen, Lars Juhl Jensen, Jesper V. Olsen, Alicia Lundby
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00959-18

Global Proteomic Changes Induced by the Epstein-Barr Virus Oncoproteins Latent Membrane Protein 1 and 2A
Cited by: 8
Author(s): Robert M. DeKroon, Harsha Gunawardena, Rachel Hood Edwards, Nancy Raab‐Traub
Software Mentions: 1
Published: over 8 years ago

10.1080/21505594.2020.1770482

TMT-based quantitative proteomics analysis reveals the attenuated replication mechanism of Newcastle disease virus caused by nuclear localization signal mutation in viral matrix protein
Cited by: 16
Author(s): Zhiqiang Duan, Chao Yuan, Yang Han, Longhu Zhou, Jianjian Zhao, Yuhua Ruan, Jiaqi Chen, Mingkang Ni, Xinqin Ji
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000264

Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery
Cited by: 55
Author(s): Avnish Patel, Abigail J. Perrin, Helen Flynn, C. Bisson, Chrislaine Withers‐Martinez, Moritz Treeck, Christian Flueck, Giuseppe Nicastro, Stephen R. Martin, Andrés Ramos, Tim‐Wolf Gilberger, Ambrosius P. Snijders, Michael J. Blackman, David A. Baker
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00340-19

Stress-Induced MazF-Mediated Proteins in Escherichia coli
Cited by: 18
Author(s): Akanksha Nigam, Tamar Ziv, Adi Oron-Gottesman, Hanna Engelberg‐Kulka
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.2002267

A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum
Cited by: 50
Author(s): Florian Fabiani, Thibaud T. Renault, Britta Peters, Tobias Dietsche, Eric Galvez, Alina Guse, Karen Freier, Emmanuelle Charpentier, Till Strowig, Mirita Franz‐Wachtel, Boris Maček, Samuel Wagner, Michael Hensel, Marc Erhardt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.1001856

The RSF1 Histone-Remodelling Factor Facilitates DNA Double-Strand Break Repair by Recruiting Centromeric and Fanconi Anaemia Proteins
Cited by: 40
Author(s): Fabio Pessina, Noel F. Lowndes
Software Mentions: 1
Published: over 12 years ago

10.1128/mBio.02825-18

Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation
Cited by: 30
Author(s): Laryssa Freitas Ribeiro, Cynthia Chelius, Karthik Boppidi, Nisha Naik, Simin Hossain, Jessica J. J. Ramsey, Jyothi Kumar, Lucas F. Ribeiro, Marc Ostermeier, Bao Tran, Young Ah Goo, Leandro José de Assis, Mevlüt Ulaş, Özgür Bayram, Gustavo H. Goldman, Stephen R. Lincoln, Ranjan Srivastava, Steven D. Harris, Mark R. Marten
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1004325

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level
Cited by: 77
Author(s): Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas, José Manuel Rodrı́guez, Ángela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
Software Mentions: 1
Published: over 11 years ago

10.1080/21505594.2020.1806675

A DUF4148 family protein produced inside RAW264.7 cells is a critical Burkholderia pseudomallei virulence factor
Cited by: 2
Author(s): Susan L. Welkos, Irma I. Blanco, Udoka Okaro, Jennifer Chua, David DeShazer
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1006291

Multisite Phosphorylation of NuMA-Related LIN-5 Controls Mitotic Spindle Positioning in C. elegans
Cited by: 15
Author(s): Vincent Portegijs, Lars-Eric Fielmich, Matilde Galli, Ruben Schmidt, Javier Muñoz, Tim van Mourik, Anna Akhmanova, Albert J. R. Heck, Mike Boxem, Sander van den Heuvel
Software Mentions: 1
Published: about 10 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724