cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-07109-8

Differential oxidation of protein-tyrosine phosphatases during zebrafish caudal fin regeneration
Cited by: 10
Author(s): Wei Wu, Alexander James Hale, Simone Lemeer, Jeroen den Hertog
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-08975-y

Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression
Cited by: 13
Author(s): Gyrid Nygaard, Lars Herfindal, Kathrine Sivertsen Åsrud, Ronja Bjørnstad, Reidun Kristin Kopperud, Eystein Oveland, Frode S. Berven, Lene Elisabeth Myhren, Erling A. Høivik, Turid Helen Felli Lunde, Marit Bakke, Stein Ove Døskeland, Frode Selheim
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.9729

Characterization and use of HapT1-derived homologous tumors as a preclinical model to evaluate therapeutic efficacy of drugs against pancreatic tumor desmoplasia
Cited by: 24
Author(s): Sujit Suklabaidya, Biswajit Das, Syed Azmal Ali, Sumeet Jain, Sharada Swaminathan, Ashok Kumar Mohanty, Sasmita Panda, Pujarini Dash, Subhankar Chakraborty, Surinder K. Batra, Shantibhusan Senapati
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-11643-w

Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry
Cited by: 23
Author(s): Maaike Rijkers, Bart L. van den Eshof, Pieter F. van der Meer, Floris P.J. van Alphen, Dirk de Korte, Frank W.G. Leebeek, Alexander B. Meijer, Jan Voorberg, A.J. Gerard Jansen
Software Mentions: 1
Published: about 7 years ago

10.1186/s13068-019-1416-9

Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium
Cited by: 22
Author(s): David A. Russo, Julie A Z Zedler, Daniel Wittmann, Benedikt Kb Möllers, Raushan Kumar Singh, Tanveer S. Batth, Bart van Oort, Jesper V. Olsen, Morten J. Bjerrum, Poul Erik Jensen
Software Mentions: 1
Published: over 5 years ago

10.1186/s13068-019-1522-8

Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation
Cited by: 21
Author(s): Zhenxing Ren, Wuxin You, Shenshen Wu, Ansgar Poetsch, Chenggang Xu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-12574-2

Knockout of the epilepsy gene Depdc5 in mice causes severe embryonic dysmorphology with hyperactivity of mTORC1 signalling
Cited by: 38
Author(s): James Hughes, Ruby Dawson, Melinda N Tea, Dale McAninch, Sandra Piltz, Dominique Jackson, Laura Stewart, Michael G. Ricos, Leanne M. Dibbens, Natasha L. Harvey, Paul Q. Thomas
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13027-6

Annexin-enriched osteoblast-derived vesicles act as an extracellular site of mineral nucleation within developing stem cell cultures
Cited by: 47
Author(s): Owen G. Davies, Sophie C. Cox, Richard L. Williams, Dimitra Tsaroucha, Ronan M. Dorrepaal, Mark P. Lewis, Liam M. Grover
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13092-x

Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics
Cited by: 37
Author(s): Takashi Shiromizu, Hideaki Kume, Mimiko Ishida, Jun Adachi, Masayuki Kano, Hisahiro Matsubara, Takeshi Tomonaga
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14078-5

Crosstalk between proteins expression and lysine acetylation in response to patulin stress in Rhodotorula mucilaginosa
Cited by: 16
Author(s): Xizhong Zheng, Qiya Yang, Lina Zhao, Maurice Tibiru Apaliya, Xiaoyun Zhang, Hongyin Zhang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14285-0

Localised genetic heterogeneity provides a novel mode of evolution in dsDNA phages
Cited by: 5
Author(s): Damian Magill, Phillip A. Kucher, В. Н. Крылов, Е. А. Плетенева, John P. Quinn, Leonid Kulakov
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14460-3

Modelling acrylamide acute neurotoxicity in zebrafish larvae
Cited by: 35
Author(s): Eva Prats, Cristian Gómez‐Canela, Shani Ben-Lulu, Tamar Ziv, Francesc Padrós, Daniel Tornero, Natàlia García-Reyero, Romà Tauler, Arie Admon, Demetrio Raldúa
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14477-8

Involvement of the Vitamin D Receptor in Energy Metabolism Revealed by Profiling of Lysine Succinylome of White Adipose Tissue
Cited by: 7
Author(s): Sileny Han, Yan Lou, Yu Fu, Yalin Zhang, Ning Liu, Zuwang Liu, Yanyan Zhou, Juan Kong
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15655-4

Large-scale identification of lysine acetylated proteins in vegetative hyphae of the rice blast fungus
Cited by: 11
Author(s): Xiaomei Sun, Zhigang Li, Huan Liu, Jun Yang, Wenxing Liang, You-Liang Peng, Jinguang Huang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15194-y

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway
Cited by: 49
Author(s): Imke K. Mandemaker, Loes van Cuijk, Roel C. Janssens, Hannes Lans, Karel Bezstarosti, Jan H.J. Hoeijmakers, Jeroen Demmers, Wim Vermeulen, Jürgen A. Marteijn
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15854-z

Proteome-wide identification of lysine 2-hydroxyisobutyrylation reveals conserved and novel histone modifications in Physcomitrella patens
Cited by: 32
Author(s): Zhiming Yu, Jun Ni, Wei Sheng, Zhikun Wang, Yuhuan Wu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15920-6

Urothelial cancer proteomics provides both prognostic and functional information
Cited by: 20
Author(s): Guillermo Velasco, Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, María Urbanowicz, G. Ruiz-Ares, Juan Manuel Sepúlveda, Guillermo Prado-Vázquez, Jorge M. Arevalillo, Andrea Zapater-Moros, Hilario Navarro, Rocío López-Vacas, Ray Manneh, Irene Otero, Felipe Villacampa, Jesús M. Paramio, Juan Ángel Fresno Vara, Daniel Castellano
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12796-4

Disulfide loop cleavage of Legionella pneumophila PlaA boosts lysophospholipase A activity
Cited by: 10
Author(s): Christina Lang, Miriam Hiller, Antje Flieger
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13068-017-0949-z

Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii
Cited by: 38
Author(s): Valentin Roustan, Shiva Bakhtiari, Pierre-Jean Roustan, Wolfram Weckwerth
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16695-6

Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system
Cited by: 16
Author(s): Andrea Hildebrandt, Gregorio Alanis-Lobato, Andrea Voigt, Kathi Zarnack, Miguel A. Andrade‐Navarro, Petra Beli, Julian König
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16793-5

Elucidating the in vivo interactome of HIV-1 RNA by hybridization capture and mass spectrometry
Cited by: 34
Author(s): Rachel A. Knoener, Jordan T. Becker, Mark Scalf, Nathan M. Sherer, Lloyd M. Smith
Software Mentions: 1
Published: almost 7 years ago

10.3390/antiox10071055

Novel Extract from Beetle Ulomoides dermestoides: A Study of Composition and Antioxidant Activity
Cited by: 10
Author(s): Н. А. Ушакова, E. S. Brodsky, Olga V. Tikhonova, А. Е. Донцов, М. В. Марсова, A. A. Shelepchikov, А. И. Бастраков
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-19424-9

Comprehensive list of SUMO targets in Caenorhabditis elegans and its implication for evolutionary conservation of SUMO signaling
Cited by: 16
Author(s): Krzysztof Drabikowski, Jacqueline Ferralli, Michał Kistowski, Jacek Olędzki, Michał Dadlez, Ruth Chiquet‐Ehrismann
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20130-9

Global ubiquitination analysis reveals extensive modification and proteasomal degradation of cowpox virus proteins, but preservation of viral cores
Cited by: 12
Author(s): Marica Grossegesse, Joerg Doellinger, Annemarie Fritsch, Michael Laue, Janett Piesker, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13068-021-02030-9

A novel Penicillium sumatraense isolate reveals an arsenal of degrading enzymes exploitable in algal bio-refinery processes
Cited by: 8
Author(s): Moira Giovannoni, Ilaria Larini, Valentina Scafati, Anna Scortica, Monica Compri, Daniela Pontiggia, Giacomo Zapparoli, Nicola Vitulo, Manuel Benedetti, Benedetta Mattei
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms21093083

In Vitro Salivary Protein Adsorption Profile on Titanium and Ceramic Surfaces and the Corresponding Putative Immunological Implications
Cited by: 8
Author(s): Chenxuan Wei, Michael F. Burrow, MG Botelho, Henry Lam, W. Keung Leung
Software Mentions: 1
Published: over 4 years ago

10.1186/s13068-020-01748-2

Integration of proteome and transcriptome refines key molecular processes underlying oil production in Nannochloropsis oceanica
Cited by: 21
Author(s): Wuxin You, Li Wei, Yanhai Gong, Mohamed El Hajjami, Jian Xu, Ansgar Poetsch
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-23702-x

Quantifying extracellular matrix turnover in human lung scaffold cultures
Cited by: 44
Author(s): Oskar Rosmark, Emma Åhrman, Catharina Müller, Linda Elowsson Rendin, Leif Eriksson, Anders Malmström, Oskar Hällgren, Anna Karin Larsson‐Callerfelt, Gunilla Westergren‐Thorsson, Johan Malmström
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24019-5

Characterization and non-parametric modeling of the developing serum proteome during infancy and early childhood
Cited by: 13
Author(s): Niina Lietzèn, Lu Cheng, Robert Moulder, Heli Siljander, Essi Laajala, Taina Härkönen, Aleksandr Peet, Aki Vehtari, Vallo Tillmann, Mikael Knip, Harri Lähdesmäki, Riitta Lahesmaa
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24380-5

HadD, a novel fatty acid synthase type II protein, is essential for alpha- and epoxy-mycolic acid biosynthesis and mycobacterial fitness
Cited by: 15
Author(s): Cyril Lefebvre, Richard Boulon, Manuelle Ducoux, Sabine Gavalda, Françoise Laval, Stevie Jamet, Nathalie Eynard, Anne Lemassu, Kaymeuang Cam, Marie‐Pierre Bousquet, Fabienne Bardou, Odile Burlet‐Schiltz, Mamadou Daffé, Annaık̈ Quémard
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25137-w

Nucleolar-nucleoplasmic shuttling of TARG1 and its control by DNA damage-induced poly-ADP-ribosylation and by nucleolar transcription
Cited by: 31
Author(s): Mareike Bütepage, Christian Preisinger, Alex von Kriegsheim, Anja Scheufen, Eva Lausberg, Jinyu Li, Ferdinand Kappes, Regina Feederle, Sabrina Ernst, Laura Eckei, Sarah Krieg, Gerhard Müller‐Newen, Giulia Rossetti, Karla L. H. Feijs, Patricia Verheugd, Bernhard Lüscher
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25060-0

Proteomic differences between focal and diffuse traumatic brain injury in human brain tissue
Cited by: 32
Author(s): Sami Abu Hamdeh, Ganna Shevchenko, Jia Mi, Sravani Musunuri, Jonas Bergquist, Niklas Marklund
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21103468

EDEM1 Drives Misfolded Protein Degradation via ERAD and Exploits ER-Phagy as Back-Up Mechanism When ERAD Is Impaired
Cited by: 17
Author(s): Marioara Chirițoiu, Gabriela Chirițoiu, Cristian V. A. Munteanu, Florin Pastrama, N. Erwin Ivessa, Ștefana M. Petrescu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-26282-y

Functional Proteomic Profiling of Secreted Serine Proteases in Health and Inflammatory Bowel Disease
Cited by: 57
Author(s): Alexandre Denadai‐Souza, Chrystelle Bonnart, Núria Solà Tapias, Marlène Marcellin, Brendan Gilmore, Laurent Alric, Delphine Bonnet, Odile Burlet‐Schiltz, Morley D. Hollenberg, Nathalie Vergnolle, Céline Deraison
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10060836

Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis
Cited by: 6
Author(s): Jayaseelan Murugaiyan, Murat Eravci, Christoph Weise, Uwe Roesler, Lisa D. Sprague, Heinrich Neubauer, Gamal Wareth
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-26676-y

A qualitative proteome-wide lysine crotonylation profiling of papaya (Carica papaya L.)
Cited by: 42
Author(s): Kaidong Liu, Changchun Yuan, Haili Li, Chen Kunyan, Lishi Lu, Chenjia Shen, Xiaolin Zheng
Software Mentions: 1
Published: over 6 years ago

10.3390/antiox10071134

The Interplay between S-Glutathionylation and Phosphorylation of Cardiac Troponin I and Myosin Binding Protein C in End-Stage Human Failing Hearts
Cited by: 12
Author(s): Heidi Budde, Roua Hassoun, Melina Tangos, Saltanat Zhazykbayeva, Melissa Herwig, Marharyta Varatnitskaya, Marcel Sieme, Simin Delalat, Innas Sultana, Detmar Kolijn, Kamilla Gömöri, Muhammad Jarkas, Mária Lódi, Kornélia Jaquet, Árṕad Kov́acs, Hans Georg Mannherz, Vasco Sequeira, Andreas Mügge, Lars I. Leichert, Samuel Sossalla, Nazha Hamdani
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-26262-2

SILAC–based quantitative MS approach for real-time recording protein-mediated cell-cell interactions
Cited by: 18
Author(s): Xixi Wang, Yu He, Ye Yang, Xinyu Zhao, Shengfu Deng, Gu He, Hongxia Zhu, Nuo Xu, Shufang Liang
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10111473

New Antibacterial Peptides from the Freshwater Mollusk Pomacea poeyana (Pilsbry, 1927)
Cited by: 13
Author(s): Melaine González García, Armando A. Rodríguez, Annia Alba, Antonio A. Vázquez, Fidel Ernesto Morales Vicente, Julio A. Perez-Erviti, Barbara Spellerberg, Steffen Stenger, Mark Grieshober, Carina Conzelmann, Jan Münch, Heinz Fabian Raber, Dennis Kubiczek, Frank Rosenau, Sebastian Wiese, Ludger Ständker, Anselmo J. Otero‐González
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-018-27394-1

Alterations of mTOR signaling impact metabolic stress resistance in colorectal carcinomas with BRAF and KRAS mutations
Cited by: 21
Author(s): Raphaela Fritsche‐Guenther, Christin Zasada, Guido Mastrobuoni, Nadine Royla, Roman Josef Rainer, Florian Roßner, Matthias Pietzke, Edda Klipp, Christine Sers, Stefan Kempa
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-27265-9

Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis
Cited by: 19
Author(s): Santosh D. Bhosale, Robert Moulder, Mikko S Venäläinen, Juha Koskinen, Niina Pitkänen, Markus Juonala, Mika Kähönen, Terho Lehtimäki, Jorma Viikari, Laura L. Elo, David R. Goodlett, Riitta Lahesmaa, Olli T. Raitakari
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-28019-3

Cluster-assembled zirconia substrates promote long-term differentiation and functioning of human islets of Langerhans
Cited by: 25
Author(s): A. Galli, Elisa Maffioli, Elisa Sogne, S. Moretti, E.S. Di Cairano, Armando Negri, Simona Nonnis, Giuseppe Danilo Norata, Fabrizia Bonacina, Francesca Borghi, Alessandro Podestà, Federico Bertuzzi, Paolo Milani, Cristina Lenardi, Gioacchino Tedeschi, Carla Perego
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29728-5

Deoxynivalenol induces structural alterations in epidermoid carcinoma cells A431 and impairs the response to biomechanical stimulation
Cited by: 14
Author(s): Giorgia Del Favero, Lydia Woelflingseder, Lukas Janker, Benjamin Neuditschko, Stefano Seriani, Paolo Gallina, Orfeo Sbaizero, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29837-1

Improved phosphoproteomic analysis for phosphosignaling and active-kinome profiling in Matrigel-embedded spheroids and patient-derived organoids
Cited by: 17
Author(s): Yuichi Abe, Asa Tada, Junko Isoyama, Satoshi Nagayama, Ryoji Yao, Jun Adachi, Takeshi Tomonaga
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30032-5

Proteomics Unravels the Regulatory Mechanisms in Human Tears Following Acute Renouncement of Contact Lens Use: A Comparison between Hard and Soft Lenses
Cited by: 22
Author(s): Caroline Manicam, Natarajan Perumal, Joanna Wasielica‐Poslednik, Yong Cajetan Ngongkole, Alexandra Tschäbunin, Marcel Sievers, Walter Lisch, Norbert Pfeiffer, Franz H. Grus, Adrian Gericke
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29983-6

Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira
Cited by: 8
Author(s): Olivier Schiettekatte, Antony T. Vincent, Christian Malosse, Pierre Lechat, Julia Chamot‐Rooke, Frédéric J. Veyrier, Mathieu Picardeau, Pascale Bourhy
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10091282

Different Research Approaches in Unraveling the Venom Proteome of Naja ashei
Cited by: 7
Author(s): Konrad K. Hus, Łukasz Marczak, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Aleksandra Bocian
Software Mentions: 1
Published: about 4 years ago

10.3390/biom11020164

LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome
Cited by: 23
Author(s): Joseph Gillen, Thunnicha Ondee, Devikala Gurusamy, Jiraphorn Issara-Amphorn, Nathan P. Manes, Sung Hwan Yoon, Asada Leelahavanichkul, Aleksandra Nita‐Lazar
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-31556-6

The involvement of the low-oxygen-activated locus of Burkholderia cenocepacia in adaptation during cystic fibrosis infection
Cited by: 6
Author(s): Louise Cullen, Andrew O’Connor, Sarah McCormack, Rebecca A. Owens, Giles Holt, Cassandra Collins, Máire Callaghan, Seán Doyle, Darren Smith, Kirsten Schaffer, David A. Fitzpatrick, Siobhán McClean
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32072-3

Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics
Cited by: 11
Author(s): Charles J Sande, Martin Mutunga, Jacqueline Muteti, James A. Berkley, D. James Nokes, James M. Njunge
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32236-1

Differential Proteome Analysis of Human Neuroblastoma Xenograft Primary Tumors and Matched Spontaneous Distant Metastases
Cited by: 7
Author(s): Lorena Hänel, Tobias Gosau, Hanna Maar, Ursula Valentiner, Udo Schumacher, Kristoffer Riecken, Sabine Windhorst, Nils-Owe Hansen, Laura Heikaus, M. Wurlitzer, Ingo Nolte, Hartmut Schlüter, Tobias Lange
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34791-z

Proteomics as a new tool to study fingermark ageing in forensics
Cited by: 36
Author(s): Stijn Oonk, Tom Schuurmans, Martin Pabst, Louis C. P. M. de Smet, Marcel de Puit
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34955-x

Proteomics reveals ablation of PlGF increases antioxidant and neuroprotective proteins in the diabetic mouse retina
Cited by: 20
Author(s): Madhu Sudhana Saddala, Anton Lennikov, Dennis J. Grab, Guei‐Sheung Liu, Shibo Tang, Huang Hu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35589-9

In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins
Cited by: 19
Author(s): Vaishnavi Ravikumar, Nicolas C. Nalpas, Viktoria Anselm, Karsten Krug, Maša Lenuzzi, Martin Sebastijan Šestak, Tomislav Domazet-Lošo, Ivan Mijaković, Boris Maček
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-35034-x

Differences in plasma fibrin clot composition in patients with thrombotic antiphospholipid syndrome compared with venous thromboembolism
Cited by: 24
Author(s): Aneta Stachowicz, Michał Ząbczyk, Joanna Natorska, Maciej Suski, Rafał Olszanecki, Ryszard Korbut, Jacek R. Wiśniewski, Anetta Undas
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37273-4

Multi-omics dataset to decipher the complexity of drug resistance in diffuse large B-cell lymphoma
Cited by: 29
Author(s): Luc‐Matthieu Fornecker, Leslie Muller, Frédèric Bertrand, Nicodème Paul, Angélique Pichot, Raoul Herbrecht, Marie‐Pierre Chenard, Laurent Mauvieux, Laurent Vallat, Seiamak Bahram, Sarah Cianférani, Raphaël Carapito, Christine Carapito
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-38890-3

Phosphoproteomic analyses of kidneys of Atlantic salmon infected with Aeromonas salmonicida
Cited by: 6
Author(s): Pengfei Liu, Yishuai Du, Lingjie Meng, Xian Li, Dong Yang, Ying Liu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-39438-1

Unique properties of PTEN-L contribute to neuroprotection in response to ischemic-like stress
Cited by: 11
Author(s): Magdalena C. E. Jochner, Jing An, Gisela Lättig-Tünnemann, Marieluise Kirchner, Alina Dagane, Gunnar Dittmar, Ulrich Dirnagl, Britta J. Eickholt, Christoph Harms
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39331-x

Trimethylation of Elongation Factor-Tu by the Dual Thermoregulated Methyltransferase EftM Does Not Impact Its Canonical Function in Translation
Cited by: 5
Author(s): Samantha M. Prezioso, Duc M. Duong, Emily G. Kuiper, Qiudong Deng, Sebastián Albertí, Graeme L. Conn, Joanna B. Goldberg
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-36852-9

Succinyl-proteome profiling of Pyricularia oryzae, a devastating phytopathogenic fungus that causes rice blast disease
Cited by: 11
Author(s): Jiaoyu Wang, Ling Li, Rongyao Chai, Zhen Zhang, Haiping Qiu, Xueqin Mao, Zhongna Hao, Yanli Wang, Guochang Sun
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41305-y

Pollens destroy respiratory epithelial cell anchors and drive alphaherpesvirus infection
Cited by: 21
Author(s): Jolien Van Cleemput, Katrien C. K. Poelaert, Kathlyn Laval, Francis Impens, Wim Van Den Broeck, Kris Gevaert, Hans Nauwynck
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42441-1

A plasma membrane localized protein phosphatase in Toxoplasma gondii, PPM5C, regulates attachment to host cells
Cited by: 19
Author(s): Chunlin Yang, Malgorzata Broncel, Caia Dominicus, Emily Sampson, William J. Blakely, Moritz Treeck, Gustavo Arrizabalaga
Software Mentions: 1
Published: over 5 years ago

10.3390/antibiotics10050501

Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate
Cited by: 1
Author(s): Suruchi Nepal, Sandra Maaß, Stefano Grasso, Francis M. Cavallo, Jürgen Bartel, Dörte Becher, Erik Bathoorn, Jan Maarten van Dijl
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-43010-2

The interactome of a family of potential methyltransferases in HeLa cells
Cited by: 43
Author(s): Valentina Ignatova, Pascal W.T.C. Jansen, Marijke P Baltissen, Michiel Vermeulen, Robert Schneider
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.9837

TMPRSS2-ERG fusion protein regulates insulin-like growth factor-1 receptor (<i>IGF1R</i>) gene expression in prostate cancer: involvement of transcription factor Sp1
Cited by: 19
Author(s): Shilhav Meisel Sharon, Yair Pozniak, Tamar Geiger, Haim Werner
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21124461

Phloem Exudate Protein Profiles during Drought and Recovery Reveal Abiotic Stress Responses in Tomato Vasculature
Cited by: 12
Author(s): Aaron J. Ogden, Jishnu Bhatt, Heather M. Brewer, Jack Kintigh, Kariuki Samwel Muiruri, Sairam Rudrabhatla, Joshua N. Adkins, Wayne R. Curtis
Software Mentions: 1
Published: over 4 years ago

10.3390/biom11081094

What Antarctic Plants Can Tell Us about Climate Changes: Temperature as a Driver for Metabolic Reprogramming
Cited by: 14
Author(s): Laura Bertini, Flora Cozzolino, Sara Proietti, Gaia Salvatore Falconieri, Ilaria Iacobucci, Rosanna Salvia, Patrizia Falabella, Maria Monti, Carla Caruso
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11081230

Epithelial Cell Line Derived from Endometriotic Lesion Mimics Macrophage Nervous Mechanism of Pain Generation on Proteome and Metabolome Levels
Cited by: 4
Author(s): Benjamin Neuditschko, Marlene Leibetseder, Julia Brunmair, Gerhard Hagn, Lukas Skos, Marlene C. Gerner, Samuel M. Meier‐Menches, Iveta Yotova, Christopher Gerner
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11010113

Eicosanoid Content in Fetal Calf Serum Accounts for Reproducibility Challenges in Cell Culture
Cited by: 11
Author(s): Laura Niederstaetter, Benjamin Neuditschko, Julia Brunmair, Lukas Janker, Andrea Bileck, Giorgia Del Favero, Christopher Gerner
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21144998

Proteomics Reveals that Methylmalonyl-CoA Mutase Modulates Cell Architecture and Increases Susceptibility to Stress
Cited by: 35
Author(s): Michele Costanzo, Marianna Caterino, Armando Cevenini, Vincent Jung, Cérina Chhuon, Joanna Lipecka, Roberta Fedele, Ida Chiara Guerrera, Margherita Ruoppolo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-48224-y

A universal approach to investigate circRNA protein coding function
Cited by: 32
Author(s): Dingding Mo, Xinping Li, Carsten A. Raabe, Di Cui, Jeanne-Franca Vollmar, Timofey S. Rozhdestvensky, Boris V. Skryabin, Juergen Brosius
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48774-1

Harnessing the tissue and plasma lncRNA-peptidome to discover peptide-based cancer biomarkers
Cited by: 14
Author(s): Sajib Chakraborty, Geoffroy Andrieux, Al Mehedi Hasan, Musaddeque Ahmed, Md. Ismail Hosen, Tania Rahman, Mohammad Amir Hossain, Melanie Boerries
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-48972-x

Ionizing Radiation induction of cholesterol biosynthesis in Lung tissue
Cited by: 13
Author(s): Erica Werner, Andrew Alter, Qiudong Deng, Eric B. Dammer, Ya Wang, David S. Yu, Duc M. Duong, Nicholas T. Seyfried, Paul W. Doetsch
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-49597-w

Temporal analysis of vaginal proteome reveals developmental changes in lower reproductive tract of gilts across the first two weeks postnatal
Cited by: 4
Author(s): KaLynn Harlow, Aridany Suárez-Trujillo, Victoria Hedrick, Tiago J. P. Sobreira, Uma K. Aryal, Kara R Stewart, Theresa Casey
Software Mentions: 1
Published: about 5 years ago

10.3390/biomedicines8080246

Mass-Spectrometry Based Proteome Comparison of Extracellular Vesicle Isolation Methods: Comparison of ME-kit, Size-Exclusion Chromatography, and High-Speed Centrifugation
Cited by: 30
Author(s): Anders Askeland, Anne Borup, Ole Østergaard, Jesper V. Olsen, Sigrid Marie Lund, Gunna Christiansen, Søren Risom Kristensen, Niels H. H. Heegaard, Shona Pedersen
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155234

(Phospho)proteomic Profiling of Microsatellite Unstable CRC Cells Reveals Alterations in Nuclear Signaling and Cholesterol Metabolism Caused by Frameshift Mutation of NMD Regulator UPF3A
Cited by: 4
Author(s): Malwina Michalak, Eva-Maria Katzenmaier, Nina Roeckel, Stefan M. Woerner, Vera Fuchs, Uwe Warnken, Yan P. Yuan, Peer Bork, Gabriele Neu‐Yilik, Andreas E. Kulozik, Magnus von Knebel Doeberitz, Matthias Kloor, Jürgen Kopitz, Johannes Gebert
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-53493-8

A mass spectrometry guided approach for the identification of novel vaccine candidates in gram-negative pathogens
Cited by: 6
Author(s): Daniel Hornburg, Tobias Kruse, Florian Anderl, Christina Daschkin, Raphaela P. Semper, Kathrin Klar, Anna Guenther, Raquel Mejías-Luque, Nicole Schneiderhan‐Marra, Matthias Mann, Felix Meissner, Markus Gerhard
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-54221-y

The landscape of tiered regulation of breast cancer cell metabolism
Cited by: 16
Author(s): Rotem Katzir, Ibrahim H. Polat, Michal Harel, Shir Katz, Carles Foguet, Vitaly A. Selivanov, Philippe Sabatier, Marta Cascante, Tamar Geiger, Eytan Ruppin
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21165841

Evidence for Enhanced Exosome Production in Aromatase Inhibitor-Resistant Breast Cancer Cells
Cited by: 21
Author(s): Giuseppina Augimeri, Giusi La Camera, Luca Gelsomino, Cinzia Giordano, Salvatore Panza, Diego Sisci, Catia Morelli, Balázs Győrffy, Daniela Bonofiglio, Sebastiano Andò, Ines Barone, Stefania Catalano
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines9081013

Regulation of the HTRA2 Protease Activity by an Inhibitory Antibody-Derived Peptide Ligand and the Influence on HTRA2-Specific Protein Interaction Networks in Retinal Tissues
Cited by: 7
Author(s): Carsten Schmelter, Kristian Nzogang Fomo, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.10840

Crosstalk among the proteome, lysine phosphorylation, and acetylation in romidepsin-treated colon cancer cells
Cited by: 7
Author(s): Tianyun Wang, Yurong Chai, Yanjie Jia, Gao J, Xiaojun Peng, Hua-Feng Han
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21186625

Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease
Cited by: 5
Author(s): Sébastien A. Gauthier, Iwona Pranke, Vincent Jung, Loredana Martignetti, Véronique Stoven, Thao Nguyen‐Khoa, Michaela Semeraro, Alexandre Hinzpeter, Aleksander Edelman, Chiara Guerrera, Isabelle Sermet‐Gaudelus
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21186601

Proteomic Approach for Searching for Universal, Tissue-Specific, and Line-Specific Markers of Extracellular Vesicles in Lung and Colorectal Adenocarcinoma Cell Lines
Cited by: 8
Author(s): Svetlana E. Novikova, N. A. Shushkova, T. E. Farafonova, Olga V. Tikhonova, Roman Kamyshinsky, Victor G. Zgoda
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-59342-3

Proteome-wide identification and functional analysis of ubiquitinated proteins in peach leaves
Cited by: 5
Author(s): Yanbo Song, Xiaojing Shi, Yanli Zou, Jian Guo, Nan Huo, Shuangjian Chen, Chen Zhao, Hong Li, Guoliang Wang, Yong Peng
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21197330

Label-Free Mass Spectrometry-Based Quantification of Linker Histone H1 Variants in Clinical Samples
Cited by: 7
Author(s): Roberta Noberini, Cristina Morales Torres, Evelyn Oliva Savoia, Stefania Brandini, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Giuseppe R. Diaferia, Paola Scaffidi, Tiziana Bonaldi
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-60890-x

Proteomic identification of early urinary-biomarkers of acute kidney injury in preterm infants
Cited by: 19
Author(s): Young Hwa Jung, Dohyun Han, Seung Han Shin, Ee Kyung Kim, Han Suk Kim
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62389-x

SPANX-A/D protein subfamily plays a key role in nuclear organisation, metabolism and flagellar motility of human spermatozoa
Cited by: 9
Author(s): Itziar Urizar-Arenaza, Nerea Osinalde, Vyacheslav Akimov, Michele Puglia, Iraia Muñoa-Hoyos, Marta Gianzo Citores, José Antonio Rodriguez, Teresa Ganzabal, Blagoy Blagoev, Irina Kratchmarova, Nerea Subirán
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-63318-8

C-reactive protein (CRP) recognizes uric acid crystals and recruits proteases C1 and MASP1
Cited by: 15
Author(s): Anika Alberts, Annika Klingberg, Anne Kathrin Wessig, Christèle Combes, Torsten Witte, Korbinian Brand, Andreas Pich, Konstantin Neumann
Software Mentions: 1
Published: over 4 years ago

10.3390/antibiotics9110757

Putative Antimicrobial Peptides of the Posterior Salivary Glands from the Cephalopod Octopus vulgaris Revealed by Exploring a Composite Protein Database
Cited by: 6
Author(s): Daniela Almeida, Dany Domínguez-Pérez, Ana Lemos de Matos, Guillermı́n Agüero-Chapin, Hugo Osório, Vı́tor Vasconcelos, Alexandre Campos, Agostinho Antunes
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-64534-y

Differential responses to kinase inhibition in FGFR2-addicted triple negative breast cancer cells: a quantitative phosphoproteomics study
Cited by: 9
Author(s): Debbie L. Cunningham, Adil R. Sarhan, Andrew J. Creese, Katherine P. B. Larkins, Hongyan Zhao, Harriet R. Ferguson, Katie Brookes, Anna A. Marusiak, Helen J. Cooper, John K. Heath
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines8080249

Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper
Cited by: 16
Author(s): Vladislav V. Babenko, Rustam H. Ziganshin, Christoph Weise, Igor A. Dyachenko, Elvira R. Shaykhutdinova, А. Н. Мурашев, Maxim N. Zhmak, Vladislav G. Starkov, Anh Hoang, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines9091145

Transgelin Contributes to a Poor Response of Metastatic Renal Cell Carcinoma to Sunitinib Treatment
Cited by: 3
Author(s): Pavla Bouchalová, Jindřich Beránek, Petr Lapčík, David Potěšil, Ján Podhorec, Alexandr Poprach, Pavel Bouchal
Software Mentions: 1
Published: about 3 years ago

10.1155/2019/3689091

Mass Spectrometry Amyloid Typing Is Reproducible across Multiple Organ Sites
Cited by: 15
Author(s): Dušan Holub, Pavla Flodrová, Tomáš Pika, Patrik Flodr, Marián Hajdúch, Petr Džubák
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-67672-5

Cystathionine β-synthase deficiency: different changes in proteomes of thrombosis-resistant Cbs−/− mice and thrombosis-prone CBS−/− humans
Cited by: 8
Author(s): Marta Sikora, I Lewandowska, Łukasz Marczak, Ewa Bretes, Hieronim Jakubowski
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67505-5

Global analysis of protein degradation in prion infected cells
Cited by: 2
Author(s): Charles R. Hutti, Kevin Welle, Jennifer R. Hryhorenko, Sina Ghaemmaghami
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21207769

A Screen for PKN3 Substrates Reveals an Activating Phosphorylation of ARHGAP18
Cited by: 2
Author(s): Michal Dibus, Jan Brábek, Daniel Rösel
Software Mentions: 1
Published: about 4 years ago

10.1155/2019/7052456

Label-Free LC-MS/MS Proteomics Analyses Reveal Proteomic Changes Accompanying<i>MSTN</i>KO in C2C12 Cells
Cited by: 6
Author(s): Lamei Wang, Yu Huang, Xiaolong Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-70230-8

Proteome and lysine acetylome analysis reveals insights into the molecular mechanism of seed germination in wheat
Cited by: 13
Author(s): Weiwei Guo, Li Han, Ximei Li, Hong Wang, Mu Peng, Qingsong Lin, Qingchang Liu, Yumei Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s13568-017-0393-2

Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica
Cited by: 16
Author(s): Guangyuan Wang, Leilei Guo, Wenxing Liang, Zhen‐Ming Chi, Lin Liu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21218121

A Global Proteomic Approach Sheds New Light on Potential Iron-Sulfur Client Proteins of the Chloroplastic Maturation Factor NFU3
Cited by: 4
Author(s): Nathalie Berger, Florence Vignols, Brigitte Touraine, Maël Taupin-Broggini, Valérie Rofidal, Vincent Demolombe, Véronique Santoni, Nicolas Rouhier, Frédéric Gaymard, Christian Dubos
Software Mentions: 1
Published: about 4 years ago

Projects: cran: Andromeda

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