cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-13027-6

Annexin-enriched osteoblast-derived vesicles act as an extracellular site of mineral nucleation within developing stem cell cultures
Cited by: 47
Author(s): Owen G. Davies, Sophie C. Cox, Richard L. Williams, Dimitra Tsaroucha, Ronan M. Dorrepaal, Mark P. Lewis, Liam M. Grover
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-13092-x

Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics
Cited by: 37
Author(s): Takashi Shiromizu, Hideaki Kume, Mimiko Ishida, Jun Adachi, Masayuki Kano, Hisahiro Matsubara, Takeshi Tomonaga
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14078-5

Crosstalk between proteins expression and lysine acetylation in response to patulin stress in Rhodotorula mucilaginosa
Cited by: 16
Author(s): Xizhong Zheng, Qiya Yang, Lina Zhao, Maurice Tibiru Apaliya, Xiaoyun Zhang, Hongyin Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14285-0

Localised genetic heterogeneity provides a novel mode of evolution in dsDNA phages
Cited by: 5
Author(s): Damian Magill, Phillip A. Kucher, В. Н. Крылов, Е. А. Плетенева, John P. Quinn, Leonid Kulakov
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14460-3

Modelling acrylamide acute neurotoxicity in zebrafish larvae
Cited by: 35
Author(s): Eva Prats, Cristian Gómez‐Canela, Shani Ben-Lulu, Tamar Ziv, Francesc Padrós, Daniel Tornero, Natàlia García-Reyero, Romà Tauler, Arie Admon, Demetrio Raldúa
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-14477-8

Involvement of the Vitamin D Receptor in Energy Metabolism Revealed by Profiling of Lysine Succinylome of White Adipose Tissue
Cited by: 7
Author(s): Sileny Han, Yan Lou, Yu Fu, Yalin Zhang, Ning Liu, Zuwang Liu, Yanyan Zhou, Juan Kong
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15655-4

Large-scale identification of lysine acetylated proteins in vegetative hyphae of the rice blast fungus
Cited by: 11
Author(s): Xiaomei Sun, Zhigang Li, Huan Liu, Jun Yang, Wenxing Liang, You-Liang Peng, Jinguang Huang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15194-y

DNA damage-induced histone H1 ubiquitylation is mediated by HUWE1 and stimulates the RNF8-RNF168 pathway
Cited by: 49
Author(s): Imke K. Mandemaker, Loes van Cuijk, Roel C. Janssens, Hannes Lans, Karel Bezstarosti, Jan H.J. Hoeijmakers, Jeroen Demmers, Wim Vermeulen, Jürgen A. Marteijn
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15854-z

Proteome-wide identification of lysine 2-hydroxyisobutyrylation reveals conserved and novel histone modifications in Physcomitrella patens
Cited by: 32
Author(s): Zhiming Yu, Jun Ni, Wei Sheng, Zhikun Wang, Yuhuan Wu
Software Mentions: 1
Published: almost 9 years ago

10.7150/thno.61832

Multi-omic profiling of plasma reveals molecular alterations in children with COVID-19
Cited by: 25
Author(s): Chong Wang, Xufang Li, Wanshan Ning, Sitang Gong, Fengxia Yang, Chunxiao Fang, Yu Gong, Di Wu, Mingbin Huang, Yujie Gou, Shanshan Fu, Yujie Ren, Ruyi Yang, Yang Qiu, Yu Xue, Yi Xu, Xi Zhou
Software Mentions: 1
Published: over 5 years ago

10.3390/toxins9100304

Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates
Cited by: 6
Author(s): Valérie Bouchez, Thibaut Douché, Mélody Dazas, Sophie Delaplane, Mariette Matondo, Julia Chamot‐Rooke, Nicole Guiso
Software Mentions: 1
Published: almost 9 years ago

10.3390/toxins10070304

Determination of the Role of Microcystis aeruginosa in Toxin Generation Based on Phosphoproteomic Profiles
Cited by: 20
Author(s): Jiangqi Qu, Liping Shen, Meng Zhao, Wentong Li, Chengxia Jia, Hua Zhu, Qingjing Zhang
Software Mentions: 1
Published: about 8 years ago

10.3390/toxins11020111

The Adenylate Cyclase (CyaA) Toxin from Bordetella pertussis Has No Detectable Phospholipase A (PLA) Activity In Vitro
Cited by: 3
Author(s): Alexis Voegele, Mirko Sadi, Dorothée Raoux-Barbot, Thibaut Douché, Mariette Matondo, Daniel Ladant, Alexandre Chenal
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins12080500

Evaluation of Antifungal Activity of Naja pallida and Naja mossambica Venoms against Three Candida Species
Cited by: 6
Author(s): Ewelina Kuna, Aleksandra Bocian, Konrad K. Hus, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Anna Lewińska, Maciej Wnuk
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12120792

Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen Erwinia amylovora
Cited by: 4
Author(s): Olivier Tremblay, Zachary Thow, A. Rod Merrill
Software Mentions: 1
Published: over 5 years ago

10.1007/s11248-017-0027-0

Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse
Cited by: 2
Author(s): Vı́tězslav Křı́ž, Michaela Krausová, Petra Burešová, Jan Dobeš, Dušan Hrčkulák, Oľga Babošová, Jiří Švec, Vladimír Kořínek
Software Mentions: 1
Published: about 9 years ago

10.1038/tp.2016.224

Proteomic analysis of the postsynaptic density implicates synaptic function and energy pathways in bipolar disorder
Cited by: 48
Author(s): Melanie Föcking, Patrick Dicker, Lorna M. Lopez, Mafdalena Hryniewiecka, Kieran Wynne, James English, Gerard Cagney, David Cotter
Software Mentions: 1
Published: over 9 years ago

10.1038/s41398-020-01024-9

Integrated phosphoproteomic and metabolomic profiling reveals perturbed pathways in the hippocampus of gut microbiota dysbiosis mice
Cited by: 21
Author(s): Haiyang Wang, Lanxiang Liu, Xuechen Rao, Benhua Zeng, Ying Yu, Chanjuan Zhou, Li Zeng, Peng Zheng, Juncai Pu, Shaohua Xu, Ke Cheng, Hanping Zhang, Ping Ji, Hong Wei, Peng Xie
Software Mentions: 1
Published: almost 6 years ago

10.1167/tvst.9.11.16

Protein Composition of the Subretinal Fluid Suggests Selective Diffusion of Vitreous Proteins in Retinal Detachment
Cited by: 7
Author(s): Ebbe Toftgaard Poulsen, Xhevat Lumi, Anders Kragh Hansen, Jan J. Enghild, Goran Petrovski
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01092-17

The Capacity of Mycobacterium tuberculosis To Survive Iron Starvation Might Enable It To Persist in Iron-Deprived Microenvironments of Human Granulomas
Cited by: 91
Author(s): Krishna Kurthkoti, Hamel Amin, Mohlopheni J. Marakalala, Saleena Ghanny, Selvakumar Subbian, Alexandra Sakatos, Jonathan Livny, Sarah M. Fortune, Michael Berney, G. Marcela Rodríguez
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00959-18

Global Proteomic Changes Induced by the Epstein-Barr Virus Oncoproteins Latent Membrane Protein 1 and 2A
Cited by: 8
Author(s): Robert M. DeKroon, Harsha Gunawardena, Rachel Hood Edwards, Nancy Raab‐Traub
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.00340-19

Stress-Induced MazF-Mediated Proteins in Escherichia coli
Cited by: 18
Author(s): Akanksha Nigam, Tamar Ziv, Adi Oron-Gottesman, Hanna Engelberg‐Kulka
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02825-18

Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation
Cited by: 30
Author(s): Laryssa Freitas Ribeiro, Cynthia Chelius, Karthik Boppidi, Nisha Naik, Simin Hossain, Jessica J. J. Ramsey, Jyothi Kumar, Lucas F. Ribeiro, Marc Ostermeier, Bao Tran, Young Ah Goo, Leandro José de Assis, Mevlüt Ulaş, Özgür Bayram, Gustavo H. Goldman, Stephen R. Lincoln, Ranjan Srivastava, Steven D. Harris, Mark R. Marten
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01138-19

Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase
Cited by: 25
Author(s): Stine Vang Nielsen, Kathryn Jane Turnbull, Mohammad Roghanian, René L. Bærentsen, Maja Šemanjski, D.E. Brodersen, Boris Maček, Kenn Gerdes
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01832-19

Clustering as a Means To Control Nitrate Respiration Efficiency and Toxicity in Escherichia coli
Cited by: 15
Author(s): Suzy Bulot, Stéphane Audebert, Lætitia Pieulle, Farida Seduk, Emilie Baudelet, Léon Espinosa, Marie-Camille Pizay, Luc Camoin, Axel Magalon
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00625-20

The WblC/WhiB7 Transcription Factor Controls Intrinsic Resistance to Translation-Targeting Antibiotics by Altering Ribosome Composition
Cited by: 18
Author(s): Ju Hyun Lee, Ji-Sun Yoo, Yeonbum Kim, Jong Seo Kim, Eun Jin Lee, Jung Hye Roe
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.00516-20

The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440
Cited by: 18
Author(s): Matthias Wehrmann, Maxime Toussaint, Jens Pfannstiel, Patrick Billard, Janosch Klebensberger
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01287-20

Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites
Cited by: 11
Author(s): Kunal R. More, Inderjeet Kaur, Quentin Giai Gianetto, Brandon M. Invergo, Thibault Chaze, Ravi Jain, Christèle Huon, Petra Gutenbrunner, Hendrik Weisser, Mariette Matondo, Jyoti S. Choudhary, Gordon Langsley, Shailja Singh, Chetan E. Chitnis
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.00123-21

The DnaK Chaperone System Buffers the Fitness Cost of Antibiotic Resistance Mutations in Mycobacteria
Cited by: 11
Author(s): Allison Fay, John Philip, Priya Saha, Ronald C. Hendrickson, Michael S. Glickman, Kristin Burns-Huang
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03674-20

A Cyanobacterial Component Required for Pilus Biogenesis Affects the Exoproteome
Cited by: 13
Author(s): Yevgeni Yegorov, Eleonora Sendersky, Shaul Zilberman, Elad Nagar, Hiba Waldman Ben‐Asher, Eyal Shimoni, Ryan Simkovsky, Susan S. Golden, Andy LiWang, Rakefet Schwarz
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00519-21

Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile
Cited by: 9
Author(s): Tránsito García-García, Sandrine Poncet, Elodie Cuenot, Thibaut Douché, Quentin Giai Gianetto, Johann Peltier, Pascal Courtin, Marie‐Pierre Chapot‐Chartier, Mariette Matondo, Bruno Dupuy, Thomas Candela, Isabelle Martin‐Verstraete
Software Mentions: 1
Published: about 5 years ago

10.1002/advs.202002596

Exosomes for Wound Healing: Purification Optimization and Identification of Bioactive Components
Cited by: 46
Author(s): Britta Hettich, Maya Ben‐Yehuda Greenwald, Sabine Werner, Jean‐Christophe Leroux
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.00365-20

Phosphoproteomics of Aspergillus fumigatus Exposed to the Antifungal Drug Caspofungin
Cited by: 7
Author(s): Eliciane Cevolani Mattos, Giuseppe Palmisano, Gustavo H. Goldman
Software Mentions: 1
Published: about 6 years ago

10.1590/1678-9199-JVATITD-2020-0053

Oxidative stress and antioxidant defense in detoxification systems of snake venom-induced toxicity
Cited by: 5
Author(s): Degang Dong, Zhongping Deng, Zhangren Yan, Wenli Mao, Jae-Seon Yi, Mei Song, Qiang Li, Jun Chen, Qi Chen, Liang Liu, Xi Wang, Xiuqin Huang, Wanchun Wang
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00134-21

A Small Regulatory RNA Generated from the malK 5′ Untranslated Region Targets Gluconeogenesis in Vibrio Species
Cited by: 3
Author(s): Xing Luo, Marick Esberard, Philippe Bouloc, Annick Jacq
Software Mentions: 1
Published: about 5 years ago

10.1128/mSphere.00327-21

Mitochondrial Contact Site and Cristae Organization System and F 1 F O -ATP Synthase Crosstalk Is a Fundamental Property of Mitochondrial Cristae
Cited by: 10
Author(s): Lawrence Rudy Cadena, Ondřej Gahura, Brian Panicucci, Alena Zı́ková, Hassan Hashimi
Software Mentions: 1
Published: about 5 years ago

10.1128/mSystems.00149-16

Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A Streptococcus Biofilms
Cited by: 24
Author(s): Jeffrey A. Freiberg, Yoann Le Breton, Bao Tran, Alison Scott, Janette M. Harro, Robert K. Ernst, Young Ah Goo, Emmanuel F. Mongodin, David R. Goodlett, Kevin S. McIver, Mark E. Shirtliff
Software Mentions: 1
Published: over 9 years ago

10.1128/mSystems.00240-18

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-DwellingBacteroidetes
Cited by: 27
Author(s): Marcel Taillefer, Magnus Ø. Arntzen, Bernard Henrissat, Phillip B. Pope, Johan Larsbrink
Software Mentions: 1
Published: almost 8 years ago

10.1002/advs.202001467

Multiresolution Imaging Using Bioluminescence Resonance Energy Transfer Identifies Distinct Biodistribution Profiles of Extracellular Vesicles and Exomeres with Redirected Tropism
Cited by: 42
Author(s): Anthony Yan Tang Wu, Yun‐Chieh Sung, Yen–Ju Chen, Steven Ting Yu Chou, Vanessa Guo, Jasper Che Yung Chien, John Jun Sheng Ko, Alan Ling Yang, Hsi Chien Huang, Ju Chen Chuang, Syuan Wu, Meng‐Ru Ho, Maria Ericsson, Wan-Wan Lin, Chantal Hoi Yin Cheung, Hsueh Fen Juan, Koji Ueda, Yunching Chen, Charles P. Lai
Software Mentions: 1
Published: about 6 years ago

10.1128/mSystems.00314-18

Salmonella Proteomic Profiling during Infection Distinguishes the Intracellular Environment of Host Cells
Cited by: 20
Author(s): Zezhou Li, Yanhua Liu, Jiaqi Fu, Buyu Zhang, Sen Cheng, Mei Wu, Zhen Wang, Jiezhang Jiang, Cheng Chang, Xiaoyun Liu
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.01751-17

Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles
Cited by: 39
Author(s): Kirstin Vonderstein, Emma Nilsson, Philipp Hubel, Larsard Nygard Skalman, Arunkumar S. Upadhyay, Jenny Pasto, Andreas Pichlmair, Richard Lundmark, Anna K. Överby
Software Mentions: 1
Published: over 8 years ago

10.1128/mSystems.01129-20

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans
Cited by: 8
Author(s): Hailin Zheng, Nana Song, Xiaowei Zhou, Huan Mei, Dongmei Li, Xiaofang Li, Weida Liu
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00549-21

Proteome Dynamics during Antibiotic Persistence and Resuscitation
Cited by: 4
Author(s): Maja Šemanjski, Fabio Lino Gratani, Till Englert, Payal Nashier, Viktor Beke, Nicolas C. Nalpas, Elsa Germain, Shilpa Elizabeth George, Christiane Wolz, Kenn Gerdes, Boris Maček
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00439-021-02345-5

ASL expression in ALDH1A1+ neurons in the substantia nigra metabolically contributes to neurodegenerative phenotype
Cited by: 6
Author(s): Shaul Lerner, Raya Eilam, Lital N. Adler, Julien Baruteau, Topaz Kreiser, Michael Tsoory, Alexander Brandis, Tevie Mehlman, Mina Ryten, Juan A. Botía, Sonia García-Ruiz, Alejandro Cisterna Garcia, Carlo Dionisi‐Vici, Giusy Ranucci, Marco Spada, Ram Mazkereth, Robert McCarter, Rima Izem, Thomas J Balmat, Rachel L. Richesson, Ehud Gazit, Sandesh C.S. Nagamani, Ayelet Erez
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40246-014-0022-y

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis
Cited by: 16
Author(s): Konstantinos Sousounis, Rital B. Bhavsar, Mario Looso, Marcus Krüger, Jessica L. Beebe, Thomas Braun, Panagiotis A. Tsonis
Software Mentions: 1
Published: over 11 years ago

10.1038/s41396-020-00769-x

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Cited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41396-018-0243-5

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
Cited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: about 8 years ago

10.1128/JVI.02211-17

N-Terminomics TAILS Identifies Host Cell Substrates of Poliovirus and Coxsackievirus B3 3C Proteinases That Modulate Virus Infection
Cited by: 58
Author(s): Julienne Jagdeo, Antoine Dufour, Théo Klein, Nestor Solis, Oded Kleifeld, Jayachandran N. Kizhakkedathu, Honglin Luo, Christopher M. Overall, Eric Jan
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-018-0737-z

Lipid accumulation in human breast cancer cells injured by iron depletors
Cited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-021-01879-w

Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancer
Cited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-02095-2

circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinoma
Cited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: almost 5 years ago

10.1084/jem.20200206

Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Cited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: about 6 years ago

10.1128/JVI.03262-15

ARID3B: a Novel Regulator of the Kaposi's Sarcoma-Associated Herpesvirus Lytic Cycle
Cited by: 10
Author(s): Janet Wood, James R. Boyne, Christina Paulus, Brian R. Jackson, Michael Nevels, Adrian Whitehouse, David J. Hughes
Software Mentions: 1
Published: almost 10 years ago

10.1080/20013078.2018.1490145

Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatography
Cited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: about 8 years ago

10.1186/s40478-017-0466-0

Enhanced exosome secretion in Down syndrome brain - a protective mechanism to alleviate neuronal endosomal abnormalities
Cited by: 81
Author(s): Sébastien A. Gauthier, Rocío Pérez‐González, Ajay Sharma, Fang-Ke Huang, Melissa J. Alldred, Monika Pawlik, Gurjinder Kaur, Stephen D. Ginsberg, Thomas A. Neubert
Software Mentions: 1
Published: almost 9 years ago

10.1080/20013078.2019.1635420

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Cited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: almost 7 years ago

10.1002/jev2.12109

Apoptotic vesicles restore liver macrophage homeostasis to counteract type 2 diabetes
Cited by: 70
Author(s): Chenxi Zheng, Bing‐Dong Sui, Xiao Zhang, Jiachen Hu, Ji Chen, Liu Jin, Di Wu, Qingyuan Ye, Lei Xiang, Xinyu Qiu, Siying Liu, Zhihong Deng, Jun Zhou, Shiyu Liu, Songtao Shi, Yan Jin
Software Mentions: 1
Published: over 5 years ago

10.1002/jev2.12129

Cryptococcus extracellular vesicles properties and their use as vaccine platforms
Cited by: 39
Author(s): Juliana Rizzo, Sarah Sze Wah Wong, Anastasia D. Gazi, Frédérique Moyrand, Thibault Chaze, Pierre‐Henri Commère, Sophie Novault, Mariette Matondo, Gérard Péhau‐Arnaudet, Flavia C G Reis, Matthijn Vos, Lysangela Ronalte Alves, Robin C. May, Leonardo Nimrichter, Márcio L. Rodrigues, Vishukumar Aimanianda, Guilhem Janbon
Software Mentions: 1
Published: about 5 years ago

10.3390/jof5010007

Proteomic Analysis of the Responses of Candida albicans during Infection of Galleria mellonella Larvae
Cited by: 16
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 7 years ago

10.3390/jof6020042

Exposure of Aspergillus fumigatus to Atorvastatin Leads to Altered Membrane Permeability and Induction of an Oxidative Stress Response
Cited by: 6
Author(s): Ahmad Ajdidi, Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7090748

ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis Manifestation
Cited by: 9
Author(s): Kevin Mok, Narissara Suratanon, Sittiruk Roytrakul, Sawanya Charoenlappanit, Preecha Patumcharoenpol, Pantipa Chatchatee, Wanwipa Vongsangnak, Massalin Nakphaichit
Software Mentions: 1
Published: almost 5 years ago

10.1155/2015/678527

Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells
Cited by: 22
Author(s): Paula A. Bousquet, Joe Alexander Sandvik, Magnus Ø. Arntzen, Nina Frederike Jeppesen Edin, Stine Christoffersen, Ute Krengel, Erik O. Pettersen, Bernd Thiede
Software Mentions: 1
Published: almost 11 years ago

10.1155/2015/841769

SILAC-Based Quantitative Proteomic Analysis of Diffuse Large B-Cell Lymphoma Patients
Cited by: 12
Author(s): Ulla Rüetschi, Martin Stenson, Sverker Hasselblom, Herman Nilsson‐Ehle, Ulrika Hansson, Henrik Fagman, Per‐Ola Andersson
Software Mentions: 1
Published: over 11 years ago

10.1167/iovs.17-22927

Generation and Proteome Profiling of PBMC-Originated, iPSC-Derived Corneal Endothelial Cells
Cited by: 23
Author(s): Muhammad Ali, Shahid Y. Khan, Shivakumar Vasanth, Mariya R Ahmed, Ruiqiang Chen, Chan Hyun Na, Jason J. Thomson, Caihong Qiu, John D. Gottsch, Saima Riazuddin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41388-019-0971-7

Microparticles from tumors exposed to radiation promote immune evasion in part by PD-L1
Cited by: 29
Author(s): Michael Timaner, Ruslana Kotsofruk, Ziv Raviv, Ksenia Magidey, Dvir Shechter, Tal Kan, A. Nevelsky, Shahar Daniel, Elisabeth G.E. de Vries, Tongwu Zhang, Orit Kaidar–Person, Robert S. Kerbel, Yuval Shaked
Software Mentions: 1
Published: almost 7 years ago

10.1093/jisesa/ieab057

Identification of N-linked Glycoproteins in Silkworm Serum Using Con A Lectin Affinity Chromatography and Mass Spectrometry
Cited by: 0
Author(s): Zhaoming Dong, Lin Ye, Yan Zhang, Zhiyong Chen, Benchi Li, Tao Zhang, Ping Zhao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41389-021-00334-x

MMP8 increases tongue carcinoma cell–cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5
Cited by: 9
Author(s): Krista Juurikka, Antoine Dufour, Kari P. Pehkonen, Barbara Mainoli, Priscila Campioni Rodrigues, Nestor Solis, Théo Klein, Pia Nyberg, Christopher M. Overall, Tuula Salo, Pirjo Åström
Software Mentions: 1
Published: about 5 years ago

10.1194/jlr.RA120001126

Perilipin 5 S155 phosphorylation by PKA is required for the control of hepatic lipid metabolism and glycemic control
Cited by: 18
Author(s): Stacey N Keenan, William De Nardo, Jieqiong Lou, Ralf B. Schittenhelm, Magdalene K Montgomery, James G. Granneman, Elizabeth Hinde, Matthew J. Watt
Software Mentions: 1
Published: over 5 years ago

10.1007/s10856-012-4760-x

Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
Cited by: 13
Author(s): Stephan Müller, Anja van der Smissen, Margarete von Feilitzsch, Ulf Anderegg, Stefan Kalkhof, Martin von Bergen
Software Mentions: 1
Published: almost 14 years ago

10.3390/nu13082657

Anti-Salmonella Activity and Peptidomic Profiling of Peptide Fractions Produced from Sturgeon Fish Skin Collagen (Huso huso) Using Commercial Enzymes
Cited by: 8
Author(s): Maryam Atef, Yasmina Ait Chait, Seýed Mahdi Ojagh, Ali Mohammad Latifi, Mina Esmaeili, Riadh Hammami, Chibuike C. Udenigwe
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.61509

Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme
Cited by: 17
Author(s): Roman O Fedoryshchak, Magdalena Přechová, Abbey M Butler, Rebecca Lee, Nicola O’Reilly, Helen Flynn, Ambrosius P Snijders, Noreen Eder, Sila K Ultanir, S. Mouilleron, Richard Treisman
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.65712

Sushi domain-containing protein 4 controls synaptic plasticity and motor learning
Cited by: 10
Author(s): Inés González-Calvo, Keerthana Iyer, Mélanie Carquin, Anouar Khayachi, Fernando Giuliani, Séverine M. Sigoillot, J.D. Vincent, Martial Séveno, Maxime Veleanu, Sylvana Tahraoui, Mélanie Albert, Oana Vigy, Célia Bosso-Lefèvre, Yann Nadjar, Andréa Dumoulin, Antoine Triller, Jean-Louis Bessereau, Laure Rondi-Reig, Philippe Isope, Fekrije Selimi
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-019-0806-3

Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy
Cited by: 16
Author(s): Wiebke A. Rehorst, Maximilian P. Thelen, Hendrik Nolte, Clara Türk, Sebahattin Çırak, Jonathan M. Peterson, G. William Wong, Brunhilde Wirth, Marcus Krüger, Dominic Winter, Min Jeong Kye
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.01990

Host-induced bacterial cell wall decomposition mediates pattern-triggered immunity in Arabidopsis
Cited by: 57
Author(s): Xiaokun Liu, Heini M Grabherr, Roland Willmann, Dagmar Kolb, Frédéric Brunner, Ute Bertsche, Daniel Kühner, Mirita Franz‐Wachtel, Bushra Amin, Georg Felix, Marc Ongena, Thorsten Nürnberger, Andrea A. Gust
Software Mentions: 1
Published: about 12 years ago

10.1186/s13068-021-02030-9

A novel Penicillium sumatraense isolate reveals an arsenal of degrading enzymes exploitable in algal bio-refinery processes
Cited by: 8
Author(s): Moira Giovannoni, Ilaria Larini, Valentina Scafati, Anna Scortica, Monica Compri, Daniela Pontiggia, Giacomo Zapparoli, Nicola Vitulo, Manuel Benedetti, Benedetta Mattei
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13068-017-0949-z

Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii
Cited by: 38
Author(s): Valentin Roustan, Shiva Bakhtiari, Pierre-Jean Roustan, Wolfram Weckwerth
Software Mentions: 1
Published: over 8 years ago

10.1186/s13068-019-1522-8

Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation
Cited by: 21
Author(s): Zhenxing Ren, Wuxin You, Shenshen Wu, Ansgar Poetsch, Chenggang Xu
Software Mentions: 1
Published: about 7 years ago

10.1186/s13068-019-1416-9

Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium
Cited by: 22
Author(s): David A. Russo, Julie A Z Zedler, Daniel Wittmann, Benedikt Kb Möllers, Raushan Kumar Singh, Tanveer S. Batth, Bart van Oort, Jesper V. Olsen, Morten J. Bjerrum, Poul Erik Jensen
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-019-1447-2

Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes
Cited by: 9
Author(s): Olga Zhivin-Nissan, Bareket Dassa, Ely Morag, Meital Kupervaser, Yishai Levin, Edward A. Bayer
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.46380

Endothelial PKA activity regulates angiogenesis by limiting autophagy through phosphorylation of ATG16L1
Cited by: 26
Author(s): Xuyao Zhao, Pavel I. Nedvetsky, Fabio Stanchi, Anne-Clémence Vion, Oliver Popp, Kerstin Zühlke, Gunnar Dittmar, Enno Klussmann, Holger Gerhardt
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13068-016-0658-z

Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose
Cited by: 81
Author(s): Ning Zhu, Jinshui Yang, Lei Ji, Jiawen Liu, Yang Yi, Hongli Yuan
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13068-020-01748-2

Integration of proteome and transcriptome refines key molecular processes underlying oil production in Nannochloropsis oceanica
Cited by: 21
Author(s): Wuxin You, Li Wei, Yanhai Gong, Mohamed El Hajjami, Jian Xu, Ansgar Poetsch
Software Mentions: 1
Published: about 6 years ago

10.3390/biom10060836

Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis
Cited by: 6
Author(s): Jayaseelan Murugaiyan, Murat Eravci, Christoph Weise, Uwe Roesler, Lisa D. Sprague, Heinrich Neubauer, Gamal Wareth
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.44210

Antigen receptor control of methionine metabolism in T cells
Cited by: 123
Author(s): Linda V. Sinclair, Andrew J. M. Howden, Alejandro Brenes, Laura Spinelli, Jens Hukelmann, Andrew N. Macintyre, Xiaojing Liu, Sarah Thomson, Peter M. Taylor, Jeffrey C. Rathmell, Jason W. Locasale, Angus I. Lamond, Doreen A. Cantrell
Software Mentions: 1
Published: over 7 years ago

10.1038/s41416-019-0384-y

Tumour-reactive T cell subsets in the microenvironment of ovarian cancer
Cited by: 43
Author(s): Marie Christine Wulff Westergaard, Rikke Andersen, Chloé Chong, Julie Westerlin Kjeldsen, Magnus Pedersen, Christina Friese, Thomas Hasselager, Henrik Lajer, George Coukos, Michal Bassani-Sternberg, Marco Donia, Inge Marie Svane
Software Mentions: 1
Published: over 7 years ago

10.1186/s13058-016-0732-2

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples
Cited by: 9
Author(s): Sofia Waldemarson, Emila Kurbasic, Morten Krogh, Paolo Cifani, Tord Berggård, Åke Borg, Peter James
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.33465

Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore
Cited by: 13
Author(s): Xun X. Bao, Christos Spanos, Tomoko Kojidani, E.M. Lynch, Juri Rappsilber, Yasushi Hiraoka, Tokuko Haraguchi, Kenneth E. Sawin
Software Mentions: 1
Published: about 8 years ago

10.1186/s13058-017-0924-4

Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells
Cited by: 7
Author(s): Asfa Alli-Shaik, Sheena Wee, Lina H.K. Lim, Jayantha Gunaratne
Software Mentions: 1
Published: over 8 years ago

10.1111/cns.13570

Comparative bioinformatics analysis between proteomes of rabbit aneurysm model and human intracranial aneurysm with label‐free quantitative proteomics
Cited by: 7
Author(s): Yingjun Liu, Yaying Song, Peixi Liu, Sichen Li, Yuan Shi, Guangrong Yu, Kai Quan, Zhiyuan Fan, Peiliang Li, Qingzhu An, Wei Zhu
Software Mentions: 1
Published: over 5 years ago

10.3390/biom10111473

New Antibacterial Peptides from the Freshwater Mollusk Pomacea poeyana (Pilsbry, 1927)
Cited by: 13
Author(s): Melaine González García, Armando A. Rodríguez, Annia Alba, Antonio A. Vázquez, Fidel Ernesto Morales Vicente, Julio A. Perez-Erviti, Barbara Spellerberg, Steffen Stenger, Mark Grieshober, Carina Conzelmann, Jan Münch, Heinz Fabian Raber, Dennis Kubiczek, Frank Rosenau, Sebastian Wiese, Ludger Ständker, Anselmo J. Otero‐González
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40170-015-0135-3

The rate of glycolysis quantitatively mediates specific histone acetylation sites
Cited by: 116
Author(s): Ahmad A. Cluntun, He Huang, Lunzhi Dai, Xiaojing Liu, Yingming Zhao, Jason W. Locasale
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40170-020-00228-3

The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis
Cited by: 5
Author(s): Jacqueline Tait-Mulder, Kelly Hodge, David Sumpton, Sara Zanivan, Alexei Vazquez
Software Mentions: 1
Published: almost 6 years ago

10.1038/leu.2013.361

Differential expression of miR-17∼92 identifies BCL2 as a therapeutic target in BCR-ABL-positive B-lineage acute lymphoblastic leukemia
Cited by: 51
Author(s): Michaela Scherr, Alex Elder, Karin Battmer, David Barzan, Simon Bomken, Melanie Ricke‐Hoch, Arne Schröder, Letizia Venturini, Helen J. Blair, Josef Vormoor, Oliver G. Ottmann, Arnold Ganser, Andreas Pich, Denise Hilfiker‐Kleiner, Olaf Heidenreich, Matthias Eder
Software Mentions: 1
Published: over 12 years ago

10.3390/life4010035

Setting the Stage for Habitable Planets
Cited by: 3
Author(s): Guillermo González
Software Mentions: 1
Published: over 12 years ago

10.3390/life11070683

Proteomic Analysis Unveils Expressional Changes in Cytoskeleton- and Synaptic Plasticity-Associated Proteins in Rat Brain Six Months after Withdrawal from Morphine
Cited by: 12
Author(s): Zdeňka Drastichová, Lucie Hejnová, Radka Moravcová, Jiřı́ Novotný
Software Mentions: 1
Published: about 5 years ago

10.26508/lsa.201900422

Pseudomonas aeruginosalectin LecB impairs keratinocyte fitness by abrogating growth factor signalling
Cited by: 11
Author(s): Alessia Landi, Muriel Mari, Svenja Kleiser, Tobias Wolf, Christine Gretzmeier, Isabel Wilhelm, Dimitra Kiritsi, Roland Thünauer, Roger Geiger, Alexander Nyström, Fulvio Reggiori, Julie Claudinon, Winfried Römer
Software Mentions: 1
Published: almost 7 years ago

10.26508/lsa.202000847

Peptide-based quorum sensing systems in Paenibacillus polymyxa
Cited by: 11
Author(s): Maya Voichek, Sandra Maaß, Tobias Kroniger, Dörte Becher, Rotem Sorek
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.35012

FRMD8 promotes inflammatory and growth factor signalling by stabilising the iRhom/ADAM17 sheddase complex
Cited by: 47
Author(s): Ulrike Künzel, Adam G. Grieve, Yao Meng, Boris Sieber, Sally A. Cowley, Matthew Freeman
Software Mentions: 1
Published: about 8 years ago

10.3390/biom10091282

Different Research Approaches in Unraveling the Venom Proteome of Naja ashei
Cited by: 7
Author(s): Konrad K. Hus, Łukasz Marczak, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Aleksandra Bocian
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.201800219

Mitochondrial stress response triggered by defects in protein synthesis quality control
Cited by: 22
Author(s): Uwe Richter, Kah Ying Ng, Fumi Suomi, Paula Marttinen, Tiina Turunen, Christopher B. Jackson, Anu Suomalainen, Helena Vihinen, Eija Jokitalo, Tuula A. Nyman, Marita A. Isokallio, James B. Stewart, Cecilia Mancini, Alfredo Brusco, Sara Seneca, Anne Lombès, Robert W. Taylor, Brendan J. Battersby
Software Mentions: 1
Published: over 7 years ago

Projects: cran: Andromeda

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Science Score: 85/100

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Papers Mentioning Andromeda 1,724