cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1111/tpj.14450

Gene modification by fast‐track recombineering for cellular localization and isolation of components of plant protein complexes
Cited by: 4
Author(s): Zhoubo Hu, Ajit Ghosh, Sara C. Stolze, Mihály Horváth, Bing Bai, Sabine Schaefer, Simone Zündorf, Shanda Liu, Anne Harzen, Mohsen Hajheidari, Tadeusz Sarnowski, Hirofumi Nakagami, Zsuzsa Koncz, Csaba Koncz
Software Mentions: 1
Published: about 7 years ago

10.1111/tpj.13575

Protein sumoylation and phosphorylation intersect in Arabidopsis signaling
Cited by: 25
Author(s): Ella Nukarinen, Konstantin Tomanov, Ionida Ziba, Wolfram Weckwerth, Andreas Bachmair
Software Mentions: 1
Published: over 9 years ago

10.3390/plants9030290

A TMT-Based Quantitative Proteome Analysis to Elucidate the TSWV Induced Signaling Cascade in Susceptible and Resistant Cultivars of Solanum lycopersicum
Cited by: 14
Author(s): Ravi Gupta, Cheol Woo Min, So Wun Kim, Ju Soon Yoo, Ah-Ram Moon, Ah-Young Shin, Suk‐Yoon Kwon, Sun Tae Kim
Software Mentions: 1
Published: over 6 years ago

10.3390/plants10071409

Optimization of Protein Isolation and Label-Free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng
Cited by: 6
Author(s): Truong Van Nguyen, So Wun Kim, Cheol Woo Min, Ravi Gupta, Gi Hyun Lee, Jeong Woo Jang, Divya Rathi, Hye Won Shin, Ju Young Jung, Ick-Hyun Jo, Woo Jong Hong, Ki Hong Jung, Seungill Kim, Yu Jin Kim, Sun Tae Kim
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9070892

Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
Cited by: 10
Author(s): Alexandre Augusto Pereira Firmino, Michał Górka, Alexander Graf, Aleksandra Skirycz, Federico Martínez-Seidel, Kerstin Zander, Joachim Kopka, Olga Beine-Golovchuk
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2017.00748

The Human Amnion Epithelial Cell Secretome Decreases Hepatic Fibrosis in Mice with Chronic Liver Fibrosis
Cited by: 56
Author(s): Majid Alhomrani, Jeanne Correia, Marcus James Zavou, Bryan Leaw, Nathan Kuk, Rong Xu, Mohamed I. Saad, Alexander Hodge, David W. Greening, Rebecca Lim, William Sievert
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.molcel.2018.04.008

Polε Instability Drives Replication Stress, Abnormal Development, and Tumorigenesis
Cited by: 65
Author(s): Roberto Bellelli, Valérie Borel, Clare V. Logan, Jennifer M. Svendsen, Danielle E. Cox, Emma Nye, Kay Metcalfe, Susan O’Çonnell, Gordon Stamp, Helen Flynn, Ambrosius P. Snijders, François Lassailly, Andrew P. Jackson, Simon J. Boulton
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.1001628

New Insights into Unusual Genetic Disorder Pave the Way for Promising Treatments
Cited by: 0
Author(s): Janelle Weaver
Software Mentions: 1
Published: about 13 years ago

10.1186/s12943-014-0280-2

OTUB1 de-ubiquitinating enzyme promotes prostate cancer cell invasion in vitro and tumorigenesis in vivo
Cited by: 48
Author(s): Diego Iglesias-Gato, Yin-Choy Chuan, Ning Jiang, Craig K. Svensson, Jing Bao, Indranil Paul, Lars Egevad, Benedikt M. Kessler, Pernilla Wikström, Yuanjie Niu, Amílcar Flores-Morales
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pbio.3001302

Proteasome activity contributes to pro-survival response upon mild mitochondrial stress in Caenorhabditis elegans
Cited by: 12
Author(s): Maria Sladowska, Michał Turek, Min-Ji Kim, Krzysztof Drabikowski, Ben Hur Marins Mussulini, Karthik Ganesh Mohanraj, Remigiusz A. Serwa, Ulrike Topf, Agnieszka Chaciñska
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3001144

Quantitative proteome comparison of human hearts with those of model organisms
Cited by: 17
Author(s): Nora Linscheid, Alberto Santos, Peter Noe Poulsen, Robert W. Mills, Kirstine Calloe, Ulrike Leurs, Johan Ziruo Ye, Christian Stolte, Morten B. Thomsen, Bo Hjorth Bentzen, Pia R. Lundegaard, Morten S. Olesen, Lars Juhl Jensen, Jesper V. Olsen, Alicia Lundby
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.01337

Systematic Investigation of the Efficacy of Sinitang Decoction Against Ulcerative Colitis
Cited by: 6
Author(s): Enhui Ji, Tingting Wang, Jing Xu, Jingjing Fan, Yi Zhang, Yongxia Guan, Hongjun Yang, Junying Wei, Guimin Zhang, Lu-Qi Huang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12943-018-0905-y

Structure-based assessment and network analysis of targeting 14-3-3 proteins in prostate cancer
Cited by: 5
Author(s): Alex Root, Azadeh Beizaei, H. Alexander Ebhardt
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.3000264

Cyclic AMP signalling controls key components of malaria parasite host cell invasion machinery
Cited by: 55
Author(s): Avnish Patel, Abigail J. Perrin, Helen Flynn, C. Bisson, Chrislaine Withers‐Martinez, Moritz Treeck, Christian Flueck, Giuseppe Nicastro, Stephen R. Martin, Andrés Ramos, Tim‐Wolf Gilberger, Ambrosius P. Snijders, Michael J. Blackman, David A. Baker
Software Mentions: 1
Published: over 7 years ago

10.3389/fphar.2020.563750

Licorice Ameliorates Cisplatin-Induced Hepatotoxicity Through Antiapoptosis, Antioxidative Stress, Anti-Inflammation, and Acceleration of Metabolism
Cited by: 22
Author(s): Qiong Man, Yi Deng, Pengjie Li, Jun Ma, Zhijun Yang, Xinggang Yang, Yan Zhou, Xiao Long Yan
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.2002267

A flagellum-specific chaperone facilitates assembly of the core type III export apparatus of the bacterial flagellum
Cited by: 50
Author(s): Florian Fabiani, Thibaud T. Renault, Britta Peters, Tobias Dietsche, Eric Galvez, Alina Guse, Karen Freier, Emmanuelle Charpentier, Till Strowig, Mirita Franz‐Wachtel, Boris Maček, Samuel Wagner, Michael Hensel, Marc Erhardt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.1001856

The RSF1 Histone-Remodelling Factor Facilitates DNA Double-Strand Break Repair by Recruiting Centromeric and Fanconi Anaemia Proteins
Cited by: 40
Author(s): Fabio Pessina, Noel F. Lowndes
Software Mentions: 1
Published: over 12 years ago

10.1186/s12885-019-5521-8

Endothelial cell-derived nidogen-1 inhibits migration of SK-BR-3 breast cancer cells
Cited by: 12
Author(s): Daniela A. Ferraro, Francesca Patella, Sara Zanivan, Cinzia Donato, Nicola Aceto, Monica Giannotta, Maren Diepenbruck, Gerhard Christofori, Martin Buess
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1004325

Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level
Cited by: 77
Author(s): Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas, José Manuel Rodrı́guez, Ángela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress
Software Mentions: 1
Published: over 11 years ago

10.1186/1476-4598-13-24

ADAM17 mediates OSCC development in an orthotopic murine model
Cited by: 15
Author(s): Fernando Moreira Simabuco, Rebeca Kawahara, Sami Yokoo, Daniela Campos Granato, Lucas Miguel, Michelle Agostini, Annelize Zambon Barbosa Aragão, Romênia R. Domingues, Isadora Luana Flores, Carolina Carneiro Soares Macedo, Ricardo D. Coletta, Edgard Graner, Adriana Franco Paes Leme
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1006291

Multisite Phosphorylation of NuMA-Related LIN-5 Controls Mitotic Spindle Positioning in C. elegans
Cited by: 15
Author(s): Vincent Portegijs, Lars-Eric Fielmich, Matilde Galli, Ruben Schmidt, Javier Muñoz, Tim van Mourik, Anna Akhmanova, Albert J. R. Heck, Mike Boxem, Sander van den Heuvel
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pgen.1003576

Integrative “Omics”-Approach Discovers Dynamic and Regulatory Features of Bacterial Stress Responses
Cited by: 54
Author(s): Bork A. Berghoff, Anne Konzer, Nils N. Mank, Mario Looso, Tom Rische, Konrad U. Förstner, Marcus Krüger, Gabriele Klug
Software Mentions: 1
Published: over 13 years ago

10.3389/fphys.2015.00261

Analysis of the protein related receptor GPR92 in G-cells
Cited by: 13
Author(s): Amelie Therese Rettenberger, Waltraud X. Schulze, Heinz Breer, Désirée Haid
Software Mentions: 1
Published: about 11 years ago

10.1186/s13041-021-00783-w

FMRP attenuates activity dependent modifications in the mitochondrial proteome
Cited by: 7
Author(s): Pernille Bülow, Stephanie A. Zlatic, Peter Wenner, Gary J. Bassell, Víctor Faúndez
Software Mentions: 1
Published: over 5 years ago

10.1242/jcs.246025

The C-terminal helix of BubR1 is essential for CENP-E-dependent chromosome alignment
Cited by: 16
Author(s): Thibault Legal, Daniel Hayward, Agata Gluszek-Kustusz, Elizabeth A. Blackburn, Christos Spanos, Juri Rappsilber, Ulrike Grüneberg, Julie Welburn
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2019.00180

Diet Induced Obesity Alters Intestinal Cytoplasmic Lipid Droplet Morphology and Proteome in the Postprandial Response to Dietary Fat
Cited by: 30
Author(s): Theresa D’Aquila, Alyssa S. Zembroski, Kimberly K. Buhman
Software Mentions: 1
Published: over 7 years ago

10.1186/s13041-021-00754-1

Enhanced contextual fear memory in peroxiredoxin 6 knockout mice is associated with hyperactivation of MAPK signaling pathway
Cited by: 10
Author(s): Sarayut Phasuk, Tanita Pairojana, Pavithra Suresh, Chee-Hing Yang, Sittiruk Roytrakul, Shangyu Huang, Chien‐Chang Chen, Narawut Pakaprot, Supin Chompoopong, Sutisa Nudmamud-Thanoi, Ingrid Y. Liu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1006099

Cavin4b/Murcb Is Required for Skeletal Muscle Development and Function in Zebrafish
Cited by: 10
Author(s): Michael P. Housley, Brian Njaine, Filomena Ricciardi, Oliver A. Stone, Soraya Hölper, Marcus Krüger, Sawa Kostin, Didier Y. R. Stainier
Software Mentions: 1
Published: over 10 years ago

10.1039/c6mb00290k

Mastitomics, the integrated omics of bovine milk in an experimental model of Streptococcus uberis mastitis: 2. Label-free relative quantitative proteomics
Cited by: 42
Author(s): Manikhandan Mudaliar, Riccardo Tassi, Funmilola Clara Thomas, Tom N. McNeilly, Stefan Weidt, Marκ McLaughlin, David Gordon Wilson, Richard Burchmore, Paweł Herzyk, P.D. Eckersall, Ruth N. Zadoks
Software Mentions: 1
Published: almost 11 years ago

10.1093/molbev/msy160

Xenacoelomorph Neuropeptidomes Reveal a Major Expansion of Neuropeptide Systems during Early Bilaterian Evolution
Cited by: 27
Author(s): Daniel Thiel, Mirita Franz‐Wachtel, Felipe Aguilera, Andreas Hejnol
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1005554

Uncovering Hidden Layers of Cell Cycle Regulation through Integrative Multi-omic Analysis
Cited by: 45
Author(s): Ranen Aviner, Anjana Shenoy, Orna Elroy‐Stein, Tamar Geiger
Software Mentions: 1
Published: about 11 years ago

10.3389/fphys.2018.00748

Antennal Protein Profile in Honeybees: Caste and Task Matter More Than Age
Cited by: 16
Author(s): Immacolata Iovinella, Federico Cappa, Alessandro Cini, Iacopo Petrocelli, Rita Cervo, Stefano Turillazzi, Francesca Romana Dani
Software Mentions: 1
Published: over 8 years ago

10.1186/s13229-020-00385-8

Targeting of δ-catenin to postsynaptic sites through interaction with the Shank3 N-terminus
Cited by: 12
Author(s): Fatemeh Hassani Nia, Daniel Woike, Victoria Martens, Malte Klüssendorf, Hans-Hinrich Hönck, Sönke Harder, Hans‐Jürgen Kreienkamp
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1004695

The Proteomic Landscape of the Suprachiasmatic Nucleus Clock Reveals Large-Scale Coordination of Key Biological Processes
Cited by: 53
Author(s): Cheng‐Kang Chiang, Neel Mehta, Abhilasha Patel, Peng Zhang, Zhibin Ning, Janice Mayne, Warren Sun, Hai-Ying Mary Cheng, Daniel Figeys
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pgen.1007189

The non-classical nuclear import carrier Transportin 1 modulates circadian rhythms through its effect on PER1 nuclear localization
Cited by: 20
Author(s): Sandra Korge, Bert Maier, Franziska Brüning, Lea Ehrhardt, Thomas Korte, Matthias Mann, Andreas Herrmann, María S. Robles, Achim Kramer
Software Mentions: 1
Published: over 8 years ago

10.1186/s13229-020-00366-x

Exosomes derived from mesenchymal stem cells improved core symptoms of genetically modified mouse model of autism Shank3B
Cited by: 23
Author(s): Nisim Perets, Oded Oron, Shay Herman, Evan Elliott, Daniel Offen
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms7120584

Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials
Cited by: 33
Author(s): Anna Hiltunen, Kirsi Savijoki, Tuula A. Nyman, Ilkka T. Miettinen, Petri Ihalainen, Jouko Peltonen, Adyary Fallarero
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pgen.1006629

The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system
Cited by: 54
Author(s): Tobias Sahr, Christophe Rusniok, Francis Impens, Giulia Oliva, Odile Sismeiro, Jean‐Yves Coppée, Carmen Buchrieser
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1009088

Genetic compensation prevents myopathy and heart failure in an in vivo model of Bag3 deficiency
Cited by: 11
Author(s): Federica Diofano, Karolina Weinmann, Isabelle Schneider, Kevin Thiessen, Wolfgang Rottbauer, Steffen Just
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2020.573433

Proteomic Analysis of Atrial Appendages Revealed the Pathophysiological Changes of Atrial Fibrillation
Cited by: 10
Author(s): Ban Liu, Xiang Li, Cuimei Zhao, Yuliang Wang, Mengwei Lv, Xin Shi, Chen Han, Pratik Pandey, Chunhua Qian, Changfa Guo, Yangyang Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0004837

A Proteomic Investigation of Hepatic Resistance to Ascaris in a Murine Model
Cited by: 20
Author(s): Gwendoline Deslyper, Thomas J. Colgan, Andrew J. Cooper, Celia V. Holland, James C. Carolan
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pntd.0004299

Genomic and Proteomic Studies on the Mode of Action of Oxaboroles against the African Trypanosome
Cited by: 32
Author(s): Deuan C. Jones, Bernardo J. Foth, Michael D. Urbaniak, Stephen Patterson, Han B. Ong, Matthew Berriman, Alan H. Fairlamb
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pntd.0006873

Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in DNA replication and noncoding RNA metabolism
Cited by: 25
Author(s): Adriana S. A. Pereira, Murilo Sena Amaral, Elton J. R. Vasconcelos, David S. Pires, Huma Asif, Luis DaSilva, David A. Morales-Vicente, Vitor Coutinho Carneiro, Cláudia Blanes Angeli, Giuseppe Palmisano, Marcelo Rosado Fantappíé, Raymond J. Pierce, João Carlos Setúbal, Sérgio Verjovski-Almeida
Software Mentions: 1
Published: almost 8 years ago

10.3390/microorganisms8030413

Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37
Cited by: 9
Author(s): Pierre-Alexander Mücke, Sandra Maaß, Thomas P. Kohler, Sven Hammerschmidt, Dörte Becher
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0008720

High-quality nuclear genome for Sarcoptes scabiei—A critical resource for a neglected parasite
Cited by: 20
Author(s): Pasi K. Korhonen, Robin B. Gasser, Guorong Ma, Tao Wang, Andreas J. Stroehlein, Neil D. Young, Ang C, Danny Fernando, H. Lu, Sara Taylor, Simone Reynolds, Ehtesham Mofiz, Shivashankar H. Najaraj, Harsha Gowda, Anil K. Madugundu, Santosh Renuse, Deborah C. Holt, Akhilesh Pandey, Anthony T. Papenfuss, Katja Fischer
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0008190

Proteomic analysis of the processes leading to Madurella mycetomatis grain formation in Galleria mellonella larvae
Cited by: 17
Author(s): Gerard Sheehan, Mickey Konings, Wilson Lim, Ahmed Hassan Fahal, Kevin Kavanagh, Wendy W. J. van de Sande
Software Mentions: 1
Published: over 6 years ago

10.1038/s41396-020-00769-x

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Cited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: about 6 years ago

10.1038/s41396-018-0243-5

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
Cited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: about 8 years ago

10.1186/s13046-018-0737-z

Lipid accumulation in human breast cancer cells injured by iron depletors
Cited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-021-01879-w

Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancer
Cited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-021-02095-2

circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinoma
Cited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20200206

Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Cited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: over 6 years ago

10.1080/20013078.2018.1490145

Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatography
Cited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 8 years ago

10.1080/20013078.2019.1635420

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Cited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: about 7 years ago

10.1002/jev2.12109

Apoptotic vesicles restore liver macrophage homeostasis to counteract type 2 diabetes
Cited by: 70
Author(s): Chenxi Zheng, Bing‐Dong Sui, Xiao Zhang, Jiachen Hu, Ji Chen, Liu Jin, Di Wu, Qingyuan Ye, Lei Xiang, Xinyu Qiu, Siying Liu, Zhihong Deng, Jun Zhou, Shiyu Liu, Songtao Shi, Yan Jin
Software Mentions: 1
Published: over 5 years ago

10.1002/jev2.12129

<i>Cryptococcus</i> extracellular vesicles properties and their use as vaccine platforms
Cited by: 39
Author(s): Juliana Rizzo, Sarah Sze Wah Wong, Anastasia D. Gazi, Frédérique Moyrand, Thibault Chaze, Pierre‐Henri Commère, Sophie Novault, Mariette Matondo, Gérard Péhau‐Arnaudet, Flavia C G Reis, Matthijn Vos, Lysangela Ronalte Alves, Robin C. May, Leonardo Nimrichter, Márcio L. Rodrigues, Vishukumar Aimanianda, Guilhem Janbon
Software Mentions: 1
Published: about 5 years ago

10.3390/jof5010007

Proteomic Analysis of the Responses of Candida albicans during Infection of Galleria mellonella Larvae
Cited by: 16
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 7 years ago

10.3390/jof6020042

Exposure of Aspergillus fumigatus to Atorvastatin Leads to Altered Membrane Permeability and Induction of an Oxidative Stress Response
Cited by: 6
Author(s): Ahmad Ajdidi, Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.3390/jof7090748

ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis Manifestation
Cited by: 9
Author(s): Kevin Mok, Narissara Suratanon, Sittiruk Roytrakul, Sawanya Charoenlappanit, Preecha Patumcharoenpol, Pantipa Chatchatee, Wanwipa Vongsangnak, Massalin Nakphaichit
Software Mentions: 1
Published: about 5 years ago

10.1155/2015/678527

Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells
Cited by: 22
Author(s): Paula A. Bousquet, Joe Alexander Sandvik, Magnus Ø. Arntzen, Nina Frederike Jeppesen Edin, Stine Christoffersen, Ute Krengel, Erik O. Pettersen, Bernd Thiede
Software Mentions: 1
Published: about 11 years ago

10.1155/2015/841769

SILAC-Based Quantitative Proteomic Analysis of Diffuse Large B-Cell Lymphoma Patients
Cited by: 12
Author(s): Ulla Rüetschi, Martin Stenson, Sverker Hasselblom, Herman Nilsson‐Ehle, Ulrika Hansson, Henrik Fagman, Per‐Ola Andersson
Software Mentions: 1
Published: over 11 years ago

10.1167/iovs.17-22927

Generation and Proteome Profiling of PBMC-Originated, iPSC-Derived Corneal Endothelial Cells
Cited by: 23
Author(s): Muhammad Ali, Shahid Y. Khan, Shivakumar Vasanth, Mariya R Ahmed, Ruiqiang Chen, Chan Hyun Na, Jason J. Thomson, Caihong Qiu, John D. Gottsch, Saima Riazuddin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41388-019-0971-7

Microparticles from tumors exposed to radiation promote immune evasion in part by PD-L1
Cited by: 29
Author(s): Michael Timaner, Ruslana Kotsofruk, Ziv Raviv, Ksenia Magidey, Dvir Shechter, Tal Kan, A. Nevelsky, Shahar Daniel, Elisabeth G.E. de Vries, Tongwu Zhang, Orit Kaidar–Person, Robert S. Kerbel, Yuval Shaked
Software Mentions: 1
Published: about 7 years ago

10.1093/jisesa/ieab057

Identification of N-linked Glycoproteins in Silkworm Serum Using Con A Lectin Affinity Chromatography and Mass Spectrometry
Cited by: 0
Author(s): Zhaoming Dong, Lin Ye, Yan Zhang, Zhiyong Chen, Benchi Li, Tao Zhang, Ping Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41389-021-00334-x

MMP8 increases tongue carcinoma cell–cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5
Cited by: 9
Author(s): Krista Juurikka, Antoine Dufour, Kari P. Pehkonen, Barbara Mainoli, Priscila Campioni Rodrigues, Nestor Solis, Théo Klein, Pia Nyberg, Christopher M. Overall, Tuula Salo, Pirjo Åström
Software Mentions: 1
Published: over 5 years ago

10.1194/jlr.RA120001126

Perilipin 5 S155 phosphorylation by PKA is required for the control of hepatic lipid metabolism and glycemic control
Cited by: 18
Author(s): Stacey N Keenan, William De Nardo, Jieqiong Lou, Ralf B. Schittenhelm, Magdalene K Montgomery, James G. Granneman, Elizabeth Hinde, Matthew J. Watt
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10856-012-4760-x

Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
Cited by: 13
Author(s): Stephan Müller, Anja van der Smissen, Margarete von Feilitzsch, Ulf Anderegg, Stefan Kalkhof, Martin von Bergen
Software Mentions: 1
Published: about 14 years ago

10.7554/eLife.61509

Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme
Cited by: 17
Author(s): Roman O Fedoryshchak, Magdalena Přechová, Abbey M Butler, Rebecca Lee, Nicola O’Reilly, Helen Flynn, Ambrosius P Snijders, Noreen Eder, Sila K Ultanir, S. Mouilleron, Richard Treisman
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.65712

Sushi domain-containing protein 4 controls synaptic plasticity and motor learning
Cited by: 10
Author(s): Inés González-Calvo, Keerthana Iyer, Mélanie Carquin, Anouar Khayachi, Fernando Giuliani, Séverine M. Sigoillot, J.D. Vincent, Martial Séveno, Maxime Veleanu, Sylvana Tahraoui, Mélanie Albert, Oana Vigy, Célia Bosso-Lefèvre, Yann Nadjar, Andréa Dumoulin, Antoine Triller, Jean-Louis Bessereau, Laure Rondi-Reig, Philippe Isope, Fekrije Selimi
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.01990

Host-induced bacterial cell wall decomposition mediates pattern-triggered immunity in Arabidopsis
Cited by: 57
Author(s): Xiaokun Liu, Heini M Grabherr, Roland Willmann, Dagmar Kolb, Frédéric Brunner, Ute Bertsche, Daniel Kühner, Mirita Franz‐Wachtel, Bushra Amin, Georg Felix, Marc Ongena, Thorsten Nürnberger, Andrea A. Gust
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.46380

Endothelial PKA activity regulates angiogenesis by limiting autophagy through phosphorylation of ATG16L1
Cited by: 26
Author(s): Xuyao Zhao, Pavel I. Nedvetsky, Fabio Stanchi, Anne-Clémence Vion, Oliver Popp, Kerstin Zühlke, Gunnar Dittmar, Enno Klussmann, Holger Gerhardt
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.44210

Antigen receptor control of methionine metabolism in T cells
Cited by: 123
Author(s): Linda V. Sinclair, Andrew J. M. Howden, Alejandro Brenes, Laura Spinelli, Jens Hukelmann, Andrew N. Macintyre, Xiaojing Liu, Sarah Thomson, Peter M. Taylor, Jeffrey C. Rathmell, Jason W. Locasale, Angus I. Lamond, Doreen A. Cantrell
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.33465

Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore
Cited by: 13
Author(s): Xun X. Bao, Christos Spanos, Tomoko Kojidani, E.M. Lynch, Juri Rappsilber, Yasushi Hiraoka, Tokuko Haraguchi, Kenneth E. Sawin
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.35012

FRMD8 promotes inflammatory and growth factor signalling by stabilising the iRhom/ADAM17 sheddase complex
Cited by: 47
Author(s): Ulrike Künzel, Adam G. Grieve, Yao Meng, Boris Sieber, Sally A. Cowley, Matthew Freeman
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.21007

Molecular basis of outer kinetochore assembly on CENP-T
Cited by: 104
Author(s): Pim J Huis in 't Veld, Sadasivam Jeganathan, Arsen Petrovic, Priyanka Singh, Juliane John, Veronica Krenn, Florian Weissmann, Tanja Bange, Andrea Musacchio
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.12748

Systematic substrate identification indicates a central role for the metalloprotease ADAM10 in axon targeting and synapse function
Cited by: 125
Author(s): Peer‐Hendrik Kuhn, Alessio Colombo, Benjamin Schusser, Daniela Dreymueller, Sebastian Wetzel, Ute Schepers, Julia Herber, Andreas Ludwig, Elisabeth Kremmer, Dirk Montag, Ulrike Müller, Michaela Schweizer, Paul Säftig, Stefan Bräse, Stefan F. Lichtenthaler
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.57495

Differential accumulation of storage bodies with aging defines discrete subsets of microglia in the healthy brain
Cited by: 39
Author(s): Jeremy C. Burns, Bunny Cotleur, Dirk Walther, Bekim Bajrami, Stephen Rubino, Ru Wei, Nathalie Franchimont, Susan L. Cotman, Richard M. Ransohoff, Michaël Mingueneau
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.32111

Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance
Cited by: 84
Author(s): Daniel J. Fazakerley, Rima Chaudhuri, Pengyi Yang, Ghassan J. Maghzal, Kristen C. Thomas, James R. Krycer, Sean J. Humphrey, Benjamin L. Parker, Kelsey H. Fisher‐Wellman, Christopher C. Meoli, Nolan J. Hoffman, Ciana Diskin, James G. Burchfield, Mark J. Cowley, Warren Kaplan, Zora Modrušan, Ganesh Kolumam, Pengyi Yang, Daniel L. Chen, Dorit Samocha-Bonet, Jerry R. Greenfield, Kyle L. Hoehn, Roland Stocker, David E. James
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.00785

MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascades
Cited by: 270
Author(s): Siqi Liu, Jueqi Chen, Xin Cai, Jiaxi Wu, Xiang Chen, You Wu, Lijun Sun, Zhijian J. Chen
Software Mentions: 1
Published: about 13 years ago

10.7554/eLife.35330

Normal mitochondrial function in Saccharomyces cerevisiae has become dependent on inefficient splicing
Cited by: 18
Author(s): Marina Rudan, Peter Bou Dib, Marina Musa, Matea Kanunnikau, Sandra Sobočanec, David Rueda, Tobias Warnecke, Anita Kriško
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.27402

Characterisation of the biflavonoid hinokiflavone as a pre-mRNA splicing modulator that inhibits SENP
Cited by: 27
Author(s): Andrea Pawellek, Ursula Ryder, Triin Tammsalu, Lewis J King, Helmi Kreinin, Tony Ly, Ronald T. Hay, Richard C. Hartley, Angus I. Lamond
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.69310

Aorta smooth muscle-on-a-chip reveals impaired mitochondrial dynamics as a therapeutic target for aortic aneurysm in bicuspid aortic valve disease
Cited by: 20
Author(s): Mieradilijiang Abudupataer, Shichao Zhu, Shiqiang Yan, Kehua Xu, Jingjing Zhang, Sushan Luo, Wenrui Ma, Md. Fazle Alam, Yuyi Tang, Hui Huang, Nan Chen, Li Wang, Guoquan Yan, Jun Li, Hao Lai, Chunsheng Wang, Kai Zhu, Weijia Zhang
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.46740

Misfolded GPI-anchored proteins are escorted through the secretory pathway by ER-derived factors
Cited by: 49
Author(s): Eszter Zavodszky, Ramanujan S. Hegde
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.11466

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Cited by: 161
Author(s): Koray Kırlı, Samir Karaca, Heinz-Jürgen Dehne, Matthias Samwer, Kuan‐Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.63868

Exocyst-mediated membrane trafficking of the lissencephaly-associated ECM receptor dystroglycan is required for proper brain compartmentalization
Cited by: 6
Author(s): Andriy S. Yatsenko, Mariya M. Kucherenko, Yuanbin Xie, Henning Urlaub, Halyna R. Shcherbata
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.36530

Efficient analysis of mammalian polysomes in cells and tissues using Ribo Mega-SEC
Cited by: 37
Author(s): Harunori Yoshikawa, Mark Larance, Dylan Harney, Ramasubramanian Sundaramoorthy, Tony Ly, Tom Owen-Hughes, Angus I. Lamond
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.24994

The genomic landscape of human cellular circadian variation points to a novel role for the signalosome
Cited by: 9
Author(s): Ludmila Gaspar, Cédric Howald, Konstantin Popadin, Bert Maier, Daniel Mauvoisin, Ermanno Moriggi, María Gutiérrez‐Arcelus, Emilie Falconnet, Christelle Borel, Dieter Kunz, Achim Kramer, Frédéric Gachon, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis, Steven A. Brown
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.37798

Comment on ‘YcgC represents a new protein deacetylase family in prokaryotes’
Cited by: 8
Author(s): Magdalena Kremer, Nora Kuhlmann, Marius Lechner, Linda Baldus, Michael Lammers
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.37623

Temporal profiling of redox-dependent heterogeneity in single cells
Cited by: 23
Author(s): Meytal Radzinski, Rosi Fassler, Ohad Yogev, William Breuer, Nadav Shai, Jenia Gutin, Sidra Ilyas, Yifat Geffen, Sabina Tsytkin-Kirschenzweig, Yaakov Nahmias, Tommer Ravid, Nir Friedman, Maya Schuldiner, Dana Reichmann
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.06848

ISG15 counteracts Listeria monocytogenes infection
Cited by: 82
Author(s): Lilliana Radoshevich, Francis Impens, David Ribet, J.J. Quereda, To Nam Tham, Marie‐Anne Nahori, Hélène Bierne, Olivier Dussurget, Javier Pizarro‐Cerdá, Klaus–Peter Knobeloch, Pascale Cossart
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.15460

Phosphorylation acts positively and negatively to regulate MRTF-A subcellular localisation and activity
Cited by: 66
Author(s): Richard Panayiotou, Francesc Miralles, Rafał Pawłowski, Jessica Diring, Helen Flynn, Mark Skehel, Richard Treisman
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.08153

Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunits
Cited by: 80
Author(s): Diego Acosta‐Alvear, Min Y. Cho, Thomas Wild, Tonia J. Buchholz, Andrew D. Lerner, Olga Šimáková, Jamie Hahn, Neha Korde, Ola Landgren, Irina Marić, Chunaram Choudhary, Peter Walter, Jonathan S. Weissman, Martin Kampmann
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.25555

Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy
Cited by: 280
Author(s): Paolo Grumati, Giulio Morozzi, Soraya Hölper, Muriel Mari, Marie Lena I.E. Harwardt, Riqiang Yan, Stefan Müller, Fulvio Reggiori, Mike Heilemann, Ivan Đikić
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.62470

Identification of host proteins differentially associated with HIV-1 RNA splice variants
Cited by: 14
Author(s): Rachel A. Knoener, Edward L. Evans, Jordan T. Becker, Mark Scalf, Bayleigh E. Benner, Nathan M. Sherer, Lloyd M. Smith
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.56590

Parkin contributes to synaptic vesicle autophagy in Bassoon-deficient mice
Cited by: 39
Author(s): Sheila Hoffmann-Conaway, Marisa M Brockmann, Katharina Schneider, Anil Annamneedi, Kazi Atikur Rahman, Christine Bruns, Kathrin Textoris-Taube, Thorsten Trimbuch, Karl‐Heinz Smalla, Christian Rosenmund, Eckart D. Gundelfinger, Craig C. Garner, Carolina Montenegro-Venegas
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.36826

BHLHE40, a third transcription factor required for insulin induction of SREBP-1c mRNA in rodent liver
Cited by: 17
Author(s): Jing Tian, Jiaxi Wu, Xiang Chen, Tong Guo, Zhijian J. Chen, Joseph L. Goldstein, Michael S. Brown
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.47498

Increased expression of heme-binding protein 1 early in Alzheimer's disease is linked to neurotoxicity
Cited by: 21
Author(s): Oleksandr Yagensky, Mahdokht Kohansal-Nodehi, Saravanan Gunaseelan, Tamara Rabe, Saima Zafar, Inga Zerr, Wolfgang Härtig, Henning Urlaub, John Jia En Chua
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.27574

Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS
Cited by: 50
Author(s): Tony Ly, Arlene Whigham, Rosemary G. Clarke, Alejandro J Brenes-Murillo, Brett Estes, Diana Madhessian, Emma Lundberg, Patricia Wadsworth, Angus I. Lamond
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.38131

Elucidating the mitochondrial proteome of Toxoplasma gondii reveals the presence of a divergent cytochrome c oxidase
Cited by: 78
Author(s): Azadeh Seidi, Linden Muellner-Wong, Esther Rajendran, Edwin T Tjhin, Laura F. Dagley, Yi Tong Vincent Aw, Pierre Faou, Andrew I. Webb, Christopher J. Tonkin, Giel G. van Dooren
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.04534

Proteomic analysis of the response to cell cycle arrests in human myeloid leukemia cells
Cited by: 44
Author(s): Tony Ly, Akira Endo, Angus I. Lamond
Software Mentions: 1
Published: almost 12 years ago

Projects: cran: Andromeda

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Science Score: 85/100

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Papers Mentioning Andromeda 1,724