cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/cancers11081166

Cisplatin-Resistance in Oral Squamous Cell Carcinoma: Regulation by Tumor Cell-Derived Extracellular Vesicles
Cited by: 48
Author(s): Xin Hui Khoo, Ian C. Paterson, Bey Hing Goh, Wai Leng Lee
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers11122032

Gigantol Targets Cancer Stem Cells and Destabilizes Tumors via the Suppression of the PI3K/AKT and JAK/STAT Pathways in Ectopic Lung Cancer Xenografts
Cited by: 33
Author(s): Nattanan Losuwannarak, Arnatchai Maiuthed, Nakarin Kitkumthorn, Asada Leelahavanichkul, Sittiruk Roytrakul, Pithi Chanvorachote
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12041018

Moesin (MSN) as a Novel Proteome-Based Diagnostic Marker for Early Detection of Invasive Bladder Urothelial Carcinoma in Liquid-Based Cytology
Cited by: 10
Author(s): Jeong Hwan Park, Cheol Lee, Dohyun Han, Jae Seok Lee, Kyung Min Lee, Min Song, Kwangsoo Kim, Heonyi Lee, Kyung Chul Moon, Youngsoo Kim, Min-A Jung, Jiwon Moon, Hyebin Lee, Han Suk Ryu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2016.06.015

Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development
Cited by: 92
Author(s): Bernhard Hampoelz, Marie‐Therese Mackmull, Pedro Machado, Paolo Ronchi, Khanh Huy Bui, Nicole L. Schieber, Rachel Santarella-Mellwig, Aleksandar Necakov, Amparo Andrés-Pons, Jean‐Marc Philippe, Thomas Lecuit, Yannick Schwab, Martin Beck
Software Mentions: 1
Published: about 10 years ago

10.1186/s13578-021-00588-3

Global analysis of HBV-mediated host proteome and ubiquitylome change in HepG2.2.15 human hepatoblastoma cell line
Cited by: 8
Author(s): Shuo Yuan, Tanzeel Yousaf, Xuezhang Tian, Dandan Zheng, Wajeeha Naz, Jiaqi Xu, Yujia Ke, Zuopeng Zhang, Xiaojun Peng, Long Lu, Guihong Sun, Deyin Guo, Min Wang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.chembiol.2019.03.006

Validation and Invalidation of Chemical Probes for the Human N-myristoyltransferases
Cited by: 27
Author(s): Wouter W. Kallemeijn, Gregor A. Lueg, Monica Faronato, Kate S. Hadavizadeh, Andrea Goya Grocin, Ok‐Ryul Song, Michael Howell, Dinis Pedro Calado, Edward W. Tate
Software Mentions: 1
Published: about 7 years ago

10.1016/j.chembiol.2017.07.009

Modulating Protein-Protein Interactions of the Mitotic Polo-like Kinases to Target Mutant KRAS
Cited by: 25
Author(s): A.J. Narvaez, Suzan Ber, Alex T. Crooks, A. N. Emery, B. Hardwick, E.G. Almeida, David J. Huggins, David Perera, Meredith Roberts-Thomson, Roberta Azzarelli, Fiona E. Hood, Ian A. Prior, David W. Walker, Richard J. Boyce, Robert G. Boyle, Samuel P. Barker, C Torrance, Grahame J. McKenzie, Ashok R. Venkitaraman
Software Mentions: 1
Published: about 9 years ago

10.1186/s12964-019-0381-z

Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages
Cited by: 9
Author(s): Marion Janschitz, Natalie Romanov, Gina Varnavides, David Maria Hollenstein, Gabriela Gérecová, Gustav Ammerer, Markus Hartl, Wolfgang Reiter
Software Mentions: 1
Published: about 7 years ago

10.1186/s12964-019-0402-y

Protein phosphatase 2A modulates podocyte maturation and glomerular functional integrity in mice
Cited by: 11
Author(s): Xinyuan Zhu, Yuhong Ye, Chengxian Xu, Cunji Gao, Yingying Zhang, Jing Zhou, Weiqiang Lin, Jianhua Mao
Software Mentions: 1
Published: about 7 years ago

10.1080/15384101.2019.1632126

Identification of proteins associated with splicing factors Ntr1, Ntr2, Brr2 and Gpl1 in the fission yeast Schizosaccharomyces pombe
Cited by: 5
Author(s): Ingrid Čipáková, Matus Jurcik, Veronika Rubintova, Marianna Borbova, Barbora Mikolaskova, Jan Jurcik, Jana Bellová, Péter Baráth, Juraj Gregáň, Luboš Čipák
Software Mentions: 1
Published: about 7 years ago

10.1038/s41418-019-0383-9

Loss of Bcl-G, a Bcl-2 family member, augments the development of inflammation-associated colorectal cancer
Cited by: 7
Author(s): Paul M. Nguyen, Laura F. Dagley, Adele Preaudet, Nga Lam, Maybelline Giam, Ka Yee Fung, Kaheina Aizel, Gemma van Duijneveldt, Chin Wee Tan, Yumiko Hirokawa, Hon Yan Kelvin Yip, Christopher G. Love, Ashleigh R. Poh, Akshay A. D’Cruz, Charlotte Burstroem, Rebecca Feltham, Suad M Abdirahman, Kristy Meiselbach, Ronnie Ren Jie Low, Michelle Palmieri, Matthias Ernst, Andrew I. Webb, Tony Burgess, Oliver M. Sieber, Philippe Bouillet, Tracy L. Putoczki
Software Mentions: 1
Published: about 7 years ago

10.1038/s41418-020-0527-y

Drp1 modulates mitochondrial stress responses to mitotic arrest
Cited by: 17
Author(s): Aida Peña‐Blanco, Manuel D. Haschka, Andreas Jenner, Theresia Zuleger, Tassula Proikas‐Cezanne, Andreas Villunger, Ana J. García‐Sáez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1936-z

TA*p63 and GTAp63 achieve tighter transcriptional regulation in quality control by converting an inhibitory element into an additional transactivation domain
Cited by: 10
Author(s): Susanne Pitzius, Christian Osterburg, Jakob Gebel, Georg Tascher, Björn Malte Schäfer, Huiqing Zhou, Christian Münch, Volker Dötsch
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-020-03177-3

EMC6 regulates acinar apoptosis via APAF1 in acute and chronic pancreatitis
Cited by: 18
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Zhao-chang Qi, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41419-018-0349-8

DZNep inhibits H3K27me3 deposition and delays retinal degeneration in the rd1 mice
Cited by: 30
Author(s): Shoujun Zheng, Lirong Xiao, Yu Liu, Yujiao Wang, Lin Cheng, Junjun Zhang, Naihong Yan, Danian Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-020-2645-3

LncRNA ANRIL acts as a modular scaffold of WDR5 and HDAC3 complexes and promotes alteration of the vascular smooth muscle cell phenotype
Cited by: 53
Author(s): Chengxin Zhang, Shangqing Ge, Wei Gong, Jinguo Xu, Zhixin Guo, Zhuang Liu, Xiaotian Gao, Xiaoyong Wei, Shuping Ge
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-020-2285-7

Alpha-synuclein fragments trigger distinct aggregation pathways
Cited by: 18
Author(s): Tasnim Chakroun, Valentin Evsyukov, Niko-Petteri Nykänen, Matthias Höllerhage, Andreas Schmidt, Frits Kamp, Viktoria Ruf, Wolfgang Wurst, Thomas W. Rösler, Günter U. Höglinger
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2017.265

Isodeoxyelephantopin induces protective autophagy in lung cancer cells via Nrf2-p62-keap1 feedback loop
Cited by: 59
Author(s): Yang Wang, Jing Zhang, Zhi‐Hao Huang, Xiaohui Huang, Wei-Bin Zheng, Xinhua Yin, Yao-Lan Li, Bin Li, Qing‐Yu He
Software Mentions: 1
Published: about 9 years ago

10.1038/s41419-020-2523-z

Formate induces a metabolic switch in nucleotide and energy metabolism
Cited by: 28
Author(s): Kristell Oizel, Jacqueline Tait-Mulder, Jorge Fernández-de-Cossio-Díaz, Matthias Pietzke, Holly Brunton, Sérgio Lilla, Sandeep Dhayade, Dimitris Athineos, Giovanny Rodriguez Blanco, David Sumpton, Gillian Mackay, Karen Blyth, Sara Zanivan, Johannes Meiser, Alexei Vazquez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41420-021-00539-4

The proteolytic landscape of cells exposed to non-lethal stresses is shaped by executioner caspases
Cited by: 4
Author(s): Maria del Carmen Conde Rubio, Roman Mylonas, Christian Widmann
Software Mentions: 1
Published: about 5 years ago

10.1038/celldisc.2016.1

Deubiquitylating enzyme USP9x regulates hippo pathway activity by controlling angiomotin protein turnover
Cited by: 33
Author(s): Hung Thanh Nguyen, Diāna Andrējeva, Rajat Gupta, Chunaram Choudhary, Xin Hong, Pieter J.A. Eichhorn, Anand C Loya, Stephen M. Cohen
Software Mentions: 1
Published: over 10 years ago

10.1038/s41421-018-0041-2

RPS3A positively regulates the mitochondrial function of human periaortic adipose tissue and is associated with coronary artery diseases
Cited by: 18
Author(s): Yan Tang, Yi He, Chen Li, Wenjuan Mu, Ying Zou, Conghui Liu, Shuwen Qian, Fuchuang Zhang, Jiabao Pan, Yina Wang, Haiyan Huang, Dongning Pan, Pengyuan Yang, Ju Mei, Rong Zeng, Qi‐Qun Tang
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.chom.2012.06.005

Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis
Cited by: 163
Author(s): Matthew L. Jones, Mark O. Collins, David Goulding, Jyoti S. Choudhary, Julian C. Rayner
Software Mentions: 1
Published: about 14 years ago

10.1016/j.cmet.2013.04.010

Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
Cited by: 328
Author(s): Sean J. Humphrey, Guang Yang, Pengyi Yang, Daniel J. Fazakerley, Jacqueline Stöckli, Pengyi Yang, David E. James
Software Mentions: 1
Published: about 13 years ago

10.1007/s00018-021-03845-3

The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand release
Cited by: 8
Author(s): Stefan Düsterhöft, Selcan Kahveci-Türköz, Justyna Wozniak, Anke Seifert, Petr Kašpárek, Henrike Ohm, Shixin Liu, Jana Kopkanova, Juliane Lokau, Christoph Garbers, Christian Preisinger, Radislav Sedláček, Matthew Freeman, Andreas Ludwig
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2020.108235

Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC Degradation
Cited by: 27
Author(s): Timothy K. Soh, Colin Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, C. L. Smith, Edward Emmott, Robin Antrobus, Stephen C. Graham, Michael P. Weekes, Colin M. Crump
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2016.02.040

Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal Autophagy
Cited by: 56
Author(s): Tian Zhang, Shichen Shen, Jun Qu, Sina Ghaemmaghami
Software Mentions: 1
Published: over 10 years ago

10.1016/j.celrep.2017.03.020

Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome Replication
Cited by: 37
Author(s): Marija Marić, Progya P. Mukherjee, Michael H. Tatham, Ronald T. Hay, Karim Labib
Software Mentions: 1
Published: over 9 years ago

10.1016/j.celrep.2018.09.007

Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
Cited by: 53
Author(s): Tea Kecman, Krzysztof Kuś, Dong-Hyuk Heo, K Duckett, Adrien Birot, Sabrina Liberatori, Shabaz Mohammed, Lucía Geis-Asteggiante, Carol V. Robinson, Lidia Vasiljeva
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2019.01.027

Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex
Cited by: 27
Author(s): Ye Dee Tay, Marcin Leda, Christos Spanos, Juri Rappsilber, Andrew B. Goryachev, Kenneth E. Sawin
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2018.10.104

Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint
Cited by: 11
Author(s): Thomas Wild, Magda Budzowska, Susanne Hellmuth, Susana Eibes, Gopal Karemore, Marin Barišić, Olaf Stemmann, Chunaram Choudhary
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2018.08.092

Interplay of Histone Marks with Serine ADP-Ribosylation
Cited by: 72
Author(s): Edward Bartlett, Juán José Bonfiglio, Evgeniia Prokhorova, Thomas Colby, Florian Zobel, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41422-020-0294-9

The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm
Cited by: 21
Author(s): Anne Ramat, Maria-Rosa Garcia-Silva, Camille Jahan, Rima Naït-Saïdi, Jérémy Dufourt, Céline Garret, Aymeric Chartier, Julie Cremaschi, Vipul Patel, Mathilde Decourcelle, Amandine Bastide, François Juge, Martine Simonelig
Software Mentions: 1
Published: over 6 years ago

10.1007/s12192-015-0583-2

Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs
Cited by: 67
Author(s): Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, Pierre Goloubinoff
Software Mentions: 1
Published: over 11 years ago

10.1016/j.tcsw.2019.100023

Assembly and disassembly of Aspergillus fumigatus conidial rodlets
Cited by: 25
Author(s): Isabel Valsecchi, Joey Lai, Emmanuel Stephen-Victor, Ariane Pillé, Audrey Beaussart, Victor Lo, Chi L.L. Pham, Vishukumar Aimanianda, Ann H. Kwan, Magalie Duchateau, Quentin Giai Gianetto, Mariette Matondo, Mélanie Lehoux, Donald C. Sheppard, Yves F. Dufrêne, Jagadeesh Bayry, J. Iñaki Guijarro, Margaret Sunde, Jean‐Paul Latgé
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cels.2017.09.011

A Compendium of Co-regulated Protein Complexes in Breast Cancer Reveals Collateral Loss Events
Cited by: 44
Author(s): Colm J. Ryan, Susan Kennedy, Ilirjana Bajrami, David Matallanas, Christopher J. Lord
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells8050512

Characterization of Lipid and Lipid Droplet Metabolism in Human HCC
Cited by: 53
Author(s): Nikolaus Berndt, Johannes Eckstein, Niklas Heucke, Robert Gajowski, Martin Stockmann, David Meierhofer, Hermann‐Georg Holzhütter
Software Mentions: 1
Published: about 7 years ago

10.3390/cells9020267

Q-Cell Glioblastoma Resource: Proteomics Analysis Reveals Unique Cell-States Are Maintained in 3D Culture
Cited by: 11
Author(s): Rochelle C.J. D’Souza, Carolin Offenhäuser, Jasmin Straube, Ulrich Baumgartner, Anja Kordowski, Yuchen Li, Brett W. Stringer, Hamish Alexander, Zarnie Lwin, Po-Ling Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd, Bryan W. Day
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9112416

BAG3 Proteomic Signature under Proteostasis Stress
Cited by: 14
Author(s): Christof Hiebel, Elisabeth Stürner, Meike Hoffmeister, Georg Tascher, Mario Schwarz, Heike Nagel, Christian Behrends, Christian Münch, Christian Behl
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9112506

Amyloid-β Precursor Protein APP Down-Regulation Alters Actin Cytoskeleton-Interacting Proteins in Endothelial Cells
Cited by: 6
Author(s): Emma Ristori, Vittoria Cicaloni, Laura Salvini, Laura Tinti, Cristina Tinti, Michael Simons, Federico Corti, Sandra Donnini, Marina Ziche
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9091927

FGF2 Inhibits Early Pancreatic Lineage Specification during Differentiation of Human Embryonic Stem Cells
Cited by: 7
Author(s): Rabea Dettmer, Karsten Cirksena, Julia Münchhoff, Jasmin Kresse, Ulf Diekmann, Isabell Niwolik, Falk F. R. Buettner, Ortwin Naujok
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9040847

Structural Similarity with Cholesterol Reveals Crucial Insights into Mechanisms Sustaining the Immunomodulatory Activity of the Mycotoxin Alternariol
Cited by: 19
Author(s): Giorgia Del Favero, Raphaela Maria Mayer, Luca Dellafiora, Lukas Janker, Laura Niederstaetter, Chiara Dall’Asta, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9061517

In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis
Cited by: 17
Author(s): Cheol Woo Min, Joonho Park, Jin‐Woo Bae, Ganesh Kumar Agrawal, Randeep Rakwal, Youngsoo Kim, Pingfang Yang, Sun Tae Kim, Ravi Gupta
Software Mentions: 1
Published: about 6 years ago

10.3390/cells9010227

Establishment and Characterization of Paired Primary Cultures of Human Pancreatic Cancer Cells and Stellate Cells Derived from the Same Tumor
Cited by: 4
Author(s): Manoj Amrutkar, Emma Kristine Larsen, Monica Aasrum, Anette Vefferstad Finstadsveen, Per Arne Andresen, Caroline Verbeke
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8010023

Commonly Used Pancreatic Stellate Cell Cultures Differ Phenotypically and in Their Interactions with Pancreatic Cancer Cells
Cited by: 24
Author(s): Daniela Lenggenhager, Manoj Amrutkar, Petra Sántha, Monica Aasrum, Matthias Löhr, Ivar P. Gladhaug, Caroline Verbeke
Software Mentions: 1
Published: over 7 years ago

10.3390/cells10071616

Cockayne Syndrome-Associated CSA and CSB Mutations Impair Ribosome Biogenesis, Ribosomal Protein Stability, and Global Protein Folding
Cited by: 11
Author(s): Mingyue Qiang, Fatima Khalid, Tamara Phan, Christina Ludwig, Karin Scharffetter‐Kochanek, Sebastian Iben
Software Mentions: 1
Published: about 5 years ago

10.3390/cells8020191

The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells
Cited by: 5
Author(s): J. Nováková, Pavel Talacko, Petr Novák, Karel Vališ
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9122580

Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson’s Disease
Cited by: 13
Author(s): Sarah Plum, Britta Eggers, Stefan Helling, Markus Stepath, Carsten Theiß, Renata Leite, Mariana Molina, Lea T. Grinberg, Peter Riederer, Manfred Gerlach, Caroline May, Katrin Marcus
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8070765

Comparison of the RNA Content of Extracellular Vesicles Derived from Paracoccidioides brasiliensis and Paracoccidioides lutzii
Cited by: 41
Author(s): Roberta Peres da Silva, Larissa G. V. Longo, Júlia Pinheiro Chagas da Cunha, Tiago J. P. Sobreira, Márcio L. Rodrigues, Helisson Faoro, Samuel Goldenberg, Lysangela Ronalte Alves, Rosana Puccia
Software Mentions: 1
Published: about 7 years ago

10.3390/cells9102269

Breast Cancer-Derived Microparticles Reduce Cancer Cell Adhesion, an Effect Augmented by Chemotherapy
Cited by: 4
Author(s): Dvir Shechter, Michal Harel, Angshuman Mukherjee, Leonel Munoz Sagredo, David Loven, Elad Prinz, Shimrit Avraham, Véronique Orian−Rousseau, Tamar Geiger, Yuval Shaked, Haguy Wolfenson
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells10020372

Proteomic Adaptation of Clostridioides difficile to Treatment with the Antimicrobial Peptide Nisin
Cited by: 6
Author(s): Sandra Maaß, Jürgen Bartel, Pierre-Alexander Mücke, Rabea Schlüter, Thomas Sura, Julia Zaschke-Kriesche, Sander H. J. Smits, Dörte Becher
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9071709

Revealing the Proteome of Motor Cortex Derived Extracellular Vesicles Isolated from Amyotrophic Lateral Sclerosis Human Postmortem Tissues
Cited by: 21
Author(s): Natasha Vassileff, Laura J. Vella, Harinda Rajapaksha, Mitch Shambrook, Amirmohammad Nasiri Kenari, Catriona McLean, Andrew F. Hill, Lesley Cheng
Software Mentions: 1
Published: about 6 years ago

10.1016/j.chembiol.2015.01.003

Global Analysis of Protein N-Myristoylation and Exploration of N-Myristoyltransferase as a Drug Target in the Neglected Human Pathogen Leishmania donovani
Cited by: 71
Author(s): Megan H. Wright, Daniel Paape, Elisabeth M. Storck, Remigiusz A. Serwa, Deborah F. Smith, Edward W. Tate
Software Mentions: 1
Published: over 11 years ago

10.1016/j.chembiol.2015.06.024

Systems Analysis of Protein Fatty Acylation in Herpes Simplex Virus-Infected Cells Using Chemical Proteomics
Cited by: 48
Author(s): Remigiusz A. Serwa, Fernando Abaitua, Eberhard Krause, Edward W. Tate, Peter O’Hare
Software Mentions: 1
Published: about 11 years ago

10.1039/c5sc03207e

A novel quenched fluorescent activity-based probe reveals caspase-3 activity in the endoplasmic reticulum during apoptosis
Cited by: 39
Author(s): Yulia Shaulov-Rotem, Emmanuelle Merquiol, Tommy Weiss-Sadan, Ofra Moshel, Seth J. Salpeter, Doron Shabat, Farnusch Kaschani, Markus Kaiser, Galia Blum
Software Mentions: 1
Published: over 10 years ago

10.1039/c5sc01699a

Bridged bicyclic peptides as potential drug scaffolds: synthesis, structure, protein binding and stability
Cited by: 31
Author(s): Marco Bartoloni, Xian Jin, M.J. Marcaida, João Banha, Ivan Dibonaventura, Swathi Bongoni, Kathrin Bartho, Olivia Gräbner, Michael Sefkow, Tamis Darbre, Jean‐Louis Reymond
Software Mentions: 1
Published: over 11 years ago

10.1186/s13148-017-0369-8

PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples
Cited by: 17
Author(s): Roberta Noberini, Rémi Longuespée, Cristina Richichi, Giancarlo Pruneri, Mark Kriegsmann, Giuliana Pelicci, Tiziana Bonaldi
Software Mentions: 1
Published: about 9 years ago

10.1007/s10585-020-10058-8

Differential regulation of extracellular matrix proteins in three recurrent liver metastases of a single patient with colorectal cancer
Cited by: 4
Author(s): Hannah Voß, M. Wurlitzer, Daniel J Smit, Florian Ewald, Malik Alawi, Michael Spohn, Daniela Indenbirken, Maryam Omidi, Kerstin A. David, Hartmut Juhl, Ronald Simon, Guido Sauter, Lutz Fischer, Jakob R. Izbicki, Mark P. Molloy, Björn Nashan, Hartmut Schlüter, Manfred Jücker
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12014-021-09322-0

Quantitative proteomic analysis of aberrant expressed lysine acetylation in gastrointestinal stromal tumors
Cited by: 1
Author(s): Bo Wang, Long Zhao, Zhidong Gao, Jianyuan Luo, Haoran Zhang, Lin Gan, Kewei Jiang, Shan Wang, Yingjiang Ye, Zhanlong Shen
Software Mentions: 1
Published: about 5 years ago

10.1186/s12014-018-9219-8

Proteomic analysis of serum proteins from HIV/AIDS patients with Talaromyces marneffei infection by TMT labeling-based quantitative proteomics
Cited by: 16
Author(s): Yahong Chen, Aiwen Huang, Wen Ao, Zhengwu Wang, Jinjin Yuan, Qing Song, Dali Wei, Hanhui Ye
Software Mentions: 1
Published: over 7 years ago

10.1186/s12014-019-9241-5

Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls
Cited by: 24
Author(s): Tone Berge, Anna Eriksson, Ina Skaara Brorson, Einar August Høgestøl, Pål Berg‐Hansen, Anne P. Døskeland, Olav Mjaavatten, Steffan Daniël Bos, Hanne F. Harbo, Frode S. Berven
Software Mentions: 1
Published: over 7 years ago

10.1186/s12014-016-9116-y

Identification of potential protein biomarkers for early detection of pregnancy in cow urine using 2D DIGE and label free quantitation
Cited by: 30
Author(s): Preeti Rawat, Shveta Bathla, Rubina Kumari Baithalu, Munna Lal Yadav, Sudarshan Kumar, Syed Azmal Ali, Anurag Tiwari, Masoud Lotfan, Jasmine Naru, Manoj Kumar Jena, Pradip Behere, Ashok Kumar Balhara, Rajesh Vashisth, Inderjeet Singh, Ajay Kumar Dang, Jai K. Kaushik, Tushar Kumar Mohanty, Ashok Kumar Mohanty
Software Mentions: 1
Published: about 10 years ago

10.1186/s12014-019-9249-x

Screening differentially expressed proteins from co-cultured hematopoietic cells and bone marrow-derived stromal cells by quantitative proteomics (SILAC) method
Cited by: 7
Author(s): Rui Li, Yi Wang, Bingxin Li, Hui Wang, Feng Guan, Zengqi Tan, Xiang Li
Software Mentions: 1
Published: about 7 years ago

10.1186/1559-0275-11-27

Identification of psoriatic arthritis mediators in synovial fluid by quantitative mass spectrometry
Cited by: 52
Author(s): Daniela Creţu, Ioannis Prassas, Punit Saraon, Ihor Batruch, Rajiv Gandhi, Eleftherios P. Diamandis, Vinod Chandran
Software Mentions: 1
Published: about 12 years ago

10.1186/s12014-018-9193-1

Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms
Cited by: 13
Author(s): Misol Do, Dohyun Han, Joseph Injae Wang, Hyunsoo Kim, Wooil Kwon, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: over 8 years ago

10.1186/s12014-019-9242-4

Plasma proteomic and autoantibody profiles reveal the proteomic characteristics involved in longevity families in Bama, China
Cited by: 8
Author(s): Shengliang Ye, Li Ma, Rong Zhang, Fengjuan Liu, Peng Jiang, Jun Xu, Haijun Cao, Xi Du, Fen Lin, Lu Cheng, Xuefeng Zhou, Zhihui Shi, Yeheng Liu, Yaojin Huang, Zongkui Wang, Changqing Li
Software Mentions: 1
Published: about 7 years ago

10.1002/cti2.1185

Proteomic analysis of extracellular vesicles reveals an immunogenic cargo in rheumatoid arthritis synovial fluid
Cited by: 16
Author(s): Andrew D Foers, Laura F. Dagley, Simon Chatfield, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 6 years ago

10.1002/ctm2.313

Quantitative acetylome analysis reveals histone modifications that may predict prognosis in hepatitis B‐related hepatocellular carcinoma
Cited by: 18
Author(s): Xiaoqiang Chai, Junkang Guo, Rui‐Zhao Dong, Xuan Yang, Chao Deng, Chuan‐Yuan Wei, Jiajie Xu, Weiyu Han, Jia‐Cheng Lu, Chao Gao, Dongmei Gao, Cheng Huang, Aiwu Ke, Shuangqi Li, Huanping Li, Yingming Tian, Zhongkai Gu, Shuxian Liu, Hang Liu, Qilong Chen, Feng Liu, Jian Zhou, Jia Fan, Guo‐Ming Shi, Feizhen Wu, Jia‐Bin Cai
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-018-0268-3

Representing dynamic biological networks with multi-scale probabilistic models
Cited by: 20
Author(s): Alexander Groß, Barbara Kracher, Johann M. Kraus, Silke D. Kühlwein, Astrid S. Pfister, Sebastian Wiese, Katrin Luckert, Oliver Pötz, Thomas Joos, Dries Van Daele, Luc De Raedt, Michael Kühl, Hans A. Kestler
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-019-0570-8

Proteomic profiling of extracellular vesicles allows for human breast cancer subtyping
Cited by: 117
Author(s): Stamatia Rontogianni, Eleni Synadaki, Bohui Li, Marte C. Liefaard, Esther H. Lips, Jelle Wesseling, Wei Wu, Maarten Altelaar
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-020-0982-5

Phosphoproteomics identifies dual-site phosphorylation in an extended basophilic motif regulating FILIP1-mediated degradation of filamin-C
Cited by: 19
Author(s): Lena Reimann, Anja N. Schwäble, Anna L. Fricke, Wignand W. D. Mühlhäuser, Yvonne Leber, Keerthika Lohanadan, Martin Puchinger, Sascha Schäuble, Erik Faessler, Heike Wiese, Christa Reichenbach, Bettina L. Knapp, Christian D. Peikert, Friedel Drepper, Udo Hahn, Clemens Kreutz, Peter F.M. van der Ven, Gerald Radziwill, Kristina Djinović-Carugo, Dieter O. Fürst, Bettina Warscheid
Software Mentions: 1
Published: about 6 years ago

10.1080/19420889.2019.1643665

CYRI/ Fam49 Proteins Represent a New Class of Rac1 Interactors
Cited by: 6
Author(s): Jamie Whitelaw, Sérgio Lilla, Nikki R. Paul, Loïc Fort, Sara Zanivan, Laura M. Machesky
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2016.03.024

Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer
Cited by: 3
Author(s): Nicos Angelopoulos, Justin Stebbing, Yang Xu, Georgios Giamas, Hua Zhang
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.02.028

Mass-spectrometry analysis of histone post-translational modifications in pathology tissue using the PAT-H-MS approach
Cited by: 6
Author(s): Roberta Noberini, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.05.023

AHR-dependent changes in the mitochondrial proteome in response to 2,3,7,8-tetrachlorodibenzo-p-dioxin
Cited by: 3
Author(s): Hye Jin Hwang, Peter Dornbos, John J. LaPres
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2018.08.037

Phosphoproteome data from abscisic acid and ethylene treated Glycine max leaves
Cited by: 4
Author(s): Ravi Gupta, Cheol Woo Min, Qiong Meng, Tae Hwan Jun, Ganesh Kumar Agrawal, Randeep Rakwal, Sun Tae Kim
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2017.07.012

Quality control and biophysical characterisation data of VanS A
Cited by: 4
Author(s): Charlotte Hughes, Edoardo Longo, Mary K. Phillips‐Jones, Rohanah Hussain
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.dib.2016.07.038

Time-course proteomics dataset monitoring HeLa cells subjected to DTT induced endoplasmic reticulum stress
Cited by: 3
Author(s): Zhe Cheng, Justin Rendleman, Christine Vogel
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2019.104125

High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data
Cited by: 5
Author(s): Talita Helen Bombardelli Gomig, Iglenir João Cavalli, Ricardo Lehtonen Rodrigues de Souza, Aline Castro Rodrigues Lucena, Michel Batista, Kelly Cavalcanti Machado, Fabrício Klerynton Marchini, Fábio Albuquerque Marchi, Rubens Silveira de Lima, Cı́cero de Andrade Urban, Luciane R. Cavalli, Enilze Maria de Souza Fonseca Ribeiro
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2015.06.015

Proteome-wide dataset generated by iTRAQ-3DLCMS/MS technique for studying the role of FerB protein in oxidative stress in Paracoccus denitrificans
Cited by: 0
Author(s): Vendula Pernikářová, Vojtěch Sedláček, David Potěšil, Iva Procházková, Zbyněk Zdráhal, Pavel Bouchal, Igor Kučera
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.dib.2015.10.018

Data for proteomic analysis of ATP-binding proteins and kinase inhibitor target proteins using an ATP probe
Cited by: 1
Author(s): Jun Adachi, Marina Kishida, Shio Watanabe, Yuki Hashimoto, Kazuna Fukamizu, Takeshi Tomonaga
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2014.08.004

Quantitative analysis of the Escherichia coli proteome
Cited by: 29
Author(s): Jacek R. Wiśniewski, Dariusz Rakus
Software Mentions: 1
Published: over 11 years ago

10.1016/j.dib.2016.05.013

Proteomics data in support of the quantification of the changes of bovine milk proteins during mammary gland involution
Cited by: 10
Author(s): Irina Boggs, Brad C. Hine, Grant Smolenksi, Kasper Hettinga, Lina Zhang, Thomas T. Wheeler
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2015.09.034

Global proteomic characterization of microdissected estrogen receptor positive breast tumors
Cited by: 1
Author(s): Tommaso De Marchi, Ning Qing Liu, Christoph Sting, Marcel Smid, Mila Tjoa, René B. H. Braakman, Theo M. Luider, John A. Foekens, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2018.10.082

Dataset on the comparative proteomic profiling of mouse saliva and serum from wild type versus the dystrophic mdx-4cv mouse model of dystrophinopathy
Cited by: 5
Author(s): Sandra Murphy, Margit Zweyer, Rustam R. Mundegar, Dieter Swandulla, Kay Ohlendieck
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2016.02.046

Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant
Cited by: 20
Author(s): Lina Zhang, Marita de Waard, Hester Verheijen, Sjef Boeren, Jos A. Hageman, Toon van Hooijdonk, Jacques Vervoort, Johannes B. van Goudoever, Kasper Hettinga
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2018.04.086

Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity
Cited by: 4
Author(s): Shivangi Awasthi, Tapan K. Maity, Benjamin L. Oyler, Xu Zhang, David R. Goodlett, Udayan Guha
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2016.05.073

Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis)
Cited by: 6
Author(s): Katarina Hörnaeus, Julie Guillemant, Jia Mi, Bodil Hernroth, Jonas Bergquist, Sara Bergström Lind
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2016.05.057

Data on the kinetics of in vitro assembled chromatin
Cited by: 2
Author(s): Moritz Völker-Albert, Miriam Caroline Pusch, Andreas Schmidt, Axel Imhof
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2015.06.010

Myristoylation profiling in human cells and zebrafish
Cited by: 9
Author(s): Malgorzata Broncel, Remigiusz A. Serwa, Paulina Ciepla, Eberhard Krause, Margaret J. Dallman, Anthony I. Magee, Edward W. Tate
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.dib.2016.08.017

Hepatic SILAC proteomic data from PANDER transgenic model
Cited by: 3
Author(s): Mark G. Athanason, Stanley M. Stevens, Brant R. Burkhardt
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2016.02.032

Data for global lysine-acetylation analysis in rice (Oryza sativa)
Cited by: 5
Author(s): Ye Xiong, Kai Zhang, Zhongyi Cheng, Guo‐Liang Wang, Wende Liu
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.05.060

Proteomic dataset for altered glycoprotein expression upon GALNT3 knockdown in ovarian cancer cells
Cited by: 7
Author(s): Razan Sheta, Florence Roux‐Dalvai, Christina M. Woo, Frédéric Fournier, Sylvie Bourassa, Carolyn R. Bertozzi, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.devcel.2018.03.018

Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase
Cited by: 37
Author(s): Jana Link, Dimitra Paouneskou, Maria Velkova, Anahita Daryabeigi, Triin Laos, Sara Labella, Consuelo Barroso, Sarai Pacheco, Alex Montoya, Holger Kramer, Alexander Woglar, Antoine Baudrimont, Sebastian Mathias Markert, Christian Stigloher, Enrique Martínez-Pérez, Alexander Dammermann, Manfred Alsheimer, Monique Zetka, Verena Jantsch
Software Mentions: 1
Published: over 8 years ago

10.1242/dev.199385

A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation
Cited by: 2
Author(s): Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedgen, Christian Thiel, Erdmann Rapp, Thomas Ruppert, Thomas Thumberger, Joachim Wittbrodt
Software Mentions: 1
Published: about 5 years ago

10.3390/diagnostics11060917

Proteomic Exploration of Plasma Exosomes and Other Small Extracellular Vesicles in Pediatric Hodgkin Lymphoma: A Potential Source of Biomarkers for Relapse Occurrence
Cited by: 11
Author(s): Ombretta Repetto, Federica Lovisa, Caterina Elia, Daniel Enderle, Filippo Romanato, Salvatore Buffardi, Alessandra Sala, Marta Pillon, Agostino Steffan, Roberta Burnelli, Lara Mussolin, Maurizio Mascarin, Vallì De Re
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.040741

SILAC-based quantitative mass spectrometry-based proteomics quantifies endoplasmic reticulum stress in whole HeLa cells
Cited by: 10
Author(s): Daniel N. Itzhak, Francesca Sacco, Nagarjuna Nagaraj, Stefka Tyanova, Matthias Mann, Marta Murgia
Software Mentions: 1
Published: over 7 years ago

10.1242/dmm.028910

Dynamic changes in the skeletal muscle proteome during denervation-induced atrophy
Cited by: 53
Author(s): Franziska Lang, Sriram Aravamudhan, Hendrik Nolte, Clara Türk, Soraya Hölper, Stefan Müller, Stefan Günther, Bert Blaauw, Thomas Braun, Marcus Krüger
Software Mentions: 1
Published: over 9 years ago

10.1016/j.ebiom.2014.10.011

Inhibition of Cyclooxygenase-2 Prevents Chronic and Recurrent Cystitis
Cited by: 83
Author(s): Thomas J. Hannan, Pacita L. Roberts, Terrence E. Riehl, Sjoerd van der Post, Jana Binkley, Drew J. Schwartz, Hiroyuki Miyoshi, Matthias Mack, Reto A. Schwendener, Thomas M. Hooton, Thaddeus S. Stappenbeck, Gunnar C. Hansson, William F. Stenson, Marco Colonna, Ann E. Stapleton, Scott J. Hultgren
Software Mentions: 1
Published: almost 12 years ago

10.15252/embj.201694912

Tumor matrix stiffness promotes metastatic cancer cell interaction with the endothelium
Cited by: 133
Author(s): Steven Reid, Emily Kay, Lisa J. Neilson, Anne Theres Henze, Jens Serneels, Ewan J. McGhee, Sandeep Dhayade, Colin Nixon, John B. G. Mackey, Alice Santi, Karthic Swaminathan, Dimitris Athineos, Vasileios Papalazarou, Francesca Patella, Álvaro Román-Fernández, Yasmin ElMaghloob, Juan R. Hernández-Fernaud, Ralf H. Adams, Shehab Ismail, David M. Bryant, Manuel Salmerón-Sánchez, Laura M. Machesky, Leo M. Carlin, Karen Blyth, Massimiliano Mazzone, Sara Zanivan
Software Mentions: 1
Published: about 9 years ago

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