Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Andromeda

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda

Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 1 year ago
3 dependent packages
1,891 downloads last month

Papers Mentioning Andromeda 1,724

10.1371/journal.pone.0135618
The Fibrin Matrix Regulates Angiogenic Responses within the Hemostatic Microenvironment through Biochemical Control
Cited by: 42
Author(s): Ektoras Hadjipanayi, Peer‐Hendrik Kuhn, Philipp Moog, Anna-Theresa Bauer, Haydar Kuekrek, Lilit Mirzoyan, Anja Hummel, Katharina Kirchhoff, Burak Salgin, Sarah von Isenburg, Ulf Dornseifer, Milomir Ninković, Hans‐Günther Machens, Arndt F. Schilling
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0231721
Proteomic analysis of protein composition of rat hippocampus exposed to morphine for 10 days; comparison with animals after 20 days of morphine withdrawal
Cited by: 8
Author(s): Hana Ujčíková, Kristína Cechová, Michal Jágr, Lenka Roubalová, Miroslava Vošahlíková, Petr Svoboda
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0168666
Comparison of Enzymatic Traits between Native and Recombinant Glycine Sarcosine N-Methyltransferase from Methanohalophilus portucalensis FDF1T
Cited by: 0
Author(s): Shu-Jung Lai, Yuchen Deng, Mei‐Chin Lai
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0048702
Nucleolar Protein Trafficking in Response to HIV-1 Tat: Rewiring the Nucleolus
Cited by: 51
Author(s): Mohamed Ali Jarboui, Carlo Bidoia, Elena Woods, Barbara Roe, Kieran Wynne, Giuliano Elia, William W. Hall, Virginie Gautier
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0104103
Large-Scale Proteomics Differentiates Cholesteatoma from Surrounding Tissues and Identifies Novel Proteins Related to the Pathogenesis
Cited by: 12
Author(s): Anders Britze, Rune Isak Dupont Birkler, Niels Gregersen, Therese Ovesen, Johan Palmfeldt
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0134727
Quantitative Analysis of Differential Proteome Expression in Bladder Cancer vs. Normal Bladder Cells Using SILAC Method
Cited by: 17
Author(s): Ganglong Yang, Zhipeng Xu, Wei Lü, Xiang Li, Chao Sun, Jia Guo, Peng Xue, Feng Guan
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0253084
GroEL is an immunodominant surface-exposed antigen of Rickettsia typhi
Cited by: 4
Author(s): Jessica Rauch, Jessica Barton, Marcel Kwiatkowski, Malte Wunderlich, Pascal Steffen, Kristin Moderzynski, Stefanie Papp, Katharina Höhn, Hella Schwanke, Susanne Witt, Ulricke Richardt, Ute Mehlhoop, Hartmut Schlüter, Verena Pianka, Bernhard Fleischer, Dennis Tappe, Anke Osterloh
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0084430
Dynamic Changes in Mucus Thickness and Ion Secretion during Citrobacter rodentium Infection and Clearance
Cited by: 45
Author(s): Jenny Gustafsson, Nazanin Navabi, Ana M. Rodríguez-Piñeiro, Ala H. A. Alomran, Pushpa Premaratne, Harvey R. Fernandez, Debashish Banerjee, Henrik Sjövall, Gunnar C. Hansson, Sara K. Lindén
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0199349
Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells
Cited by: 7
Author(s): Barbora Šalovská, Hana Janečková, Ivo Fabrik, Radana Karlíková, Lucie Čecháková, Martin Ondrej, Marek Link, David Friedecký, Aleš Tichý
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0172481
Characterization of the human aqueous humour proteome: A comparison of the genders
Cited by: 17
Author(s): Natarajan Perumal, Caroline Manicam, Matthias Steinicke, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0155324
Optimization of Liver Decellularization Maintains Extracellular Matrix Micro-Architecture and Composition Predisposing to Effective Cell Seeding
Cited by: 68
Author(s): Panagiotis Maghsoudlou, Fanourios Georgiades, H. R. Smith, À Milan, Panicos Shangaris, Luca Urbani, Stavros Loukogeorgakis, Benedetta Lombardi, Giuseppe Mazza, Charlotte K. Hagen, Neil J. Sebire, Mark Turmaine, Simon Eaton, Alessandro Olivo, Jasminka Godovac‐Zimmermann, Massimo Pinzani, Paul Gissen, Paolo De Coppi
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0197659
Alterations in the brain interactome of the intrinsically disordered N-terminal domain of the cellular prion protein (PrPC) in Alzheimer’s disease
Cited by: 17
Author(s): Sarah Ulbrich, Petra Janning, R. Seidel, Jakob Matschke, Anika Gonsberg, Sebastian Jung, Markus Glatzel, Martin Engelhard, Konstanze F. Winklhofer, Jörg Tatzelt
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0141527
Comparison of the Cowpox Virus and Vaccinia Virus Mature Virion Proteome: Analysis of the Species- and Strain-Specific Proteome
Cited by: 25
Author(s): Joerg Doellinger, Lars Schaade, Andreas Nitsche
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0052692
Proteomic Comparison of MCF-7 Tumoursphere and Monolayer Cultures
Cited by: 20
Author(s): Brian J. Morrison, Marcus L. Hastie, Yadveer S. Grewal, Zara C. Bruce, Chris Schmidt, Brent A. Reynolds, Jeffrey J. Gorman, J. Alejandro Lopez
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0142162
A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma
Cited by: 30
Author(s): Paul A. Stewart, Katja Parapatics, Eric A. Welsh, André C. Müller, Haoyun Cao, Bin Fang, John M. Koomen, Steven Eschrich, Keiryn L. Bennett, Eric B. Haura
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0091380
Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification Method
Cited by: 20
Author(s): Przemysław Płociński, Daniel Laubitz, Dominik Cysewski, Krystian Stoduś, Katarzyna Kowalska, Andrzej Dziembowski
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0183908
Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetes
Cited by: 25
Author(s): Julius O. Nyalwidhe, Wojciech J. Grzesik, Tanya C. Burch, Michele L. Semeraro, Tayab Waseem, Ivan Gerling, Raghavendra G. Mirmira, Margaret A. Morris, Jerry L. Nadler
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0147586
Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum)
Cited by: 66
Author(s): Weibo Jin, Fuyong Wu
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0204522
Time-resolved proteomics of adenovirus infected cells
Cited by: 16
Author(s): Alberto Valdés, Hongxing Zhao, Ulf Pettersson, Sara Bergström Lind
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0177871
BIRC6 mediates imatinib resistance independently of Mcl-1
Cited by: 15
Author(s): Denis Okumu, Michael P. East, Merlin Levine, Laura E. Herring, Raymond Zhang, Samuel F. Gilbert, David W. Litchfield, Yanping Zhang, Lee M. Graves
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0116702
ABCE1 Is a Highly Conserved RNA Silencing Suppressor
Cited by: 15
Author(s): Kairi Kärblane, Jelena Gerassimenko, Lenne Nigul, Alla Piirsoo, Agata Smialowska, Kadri Vinkel, Per Kylsten, Karl Ekwall, Peter Swoboda, Erkki Truve, Cecilia Sarmiento
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0186806
Mass spectrometry-based quantification of the cellular response to ultraviolet radiation in HeLa cells
Cited by: 4
Author(s): Hong Xu, Xuanyi Chen, Nanjiao Ying, Meixia Wang, Xin Xu, Rongyi Shi, Yuejin Hua
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0232585
Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesis
Cited by: 4
Author(s): Benoît Besson, Justine Basset, Sandrine Gatellier, Hélène Chabrolles, Thibault Chaze, Véronique Hourdel, Mariette Matondo, Nathalie Pardigon, Valérie Choumet
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0094391
Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and Metabolism
Cited by: 28
Author(s): Christin Siewert, Toni Luge, Bojan Duduk, E. Seemüller, Carmen Büttner, Sascha Sauer, Michael Kube
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0206478
Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker research
Cited by: 25
Author(s): Lukas Schilde, Steffen Kösters, Simone Steinbach, Karin Schork, Martin Eisenacher, Sara Galozzi, Michael Turewicz, Katalin Barkovits, Brit Mollenhauer, Katrin Marcus, Caroline May
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0151764
Proteins in the Cocoon of Silkworm Inhibit the Growth of Beauveria bassiana
Cited by: 23
Author(s): Xiaomeng Guo, Zhaoming Dong, Yan Zhang, Youshan Li, Huawei Liu, Qingyou Xia, Ping Zhao
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0072951
Accurate LC Peak Boundary Detection for 16O/18O Labeled LC-MS Data
Cited by: 8
Author(s): Jian Cui, Konstantinos Pétritis, Tony Tegeler, Brianne Petritis, Xuepo Ma, Yufang Jin, Shou‐Jiang Gao, Jianqiu Michelle Zhang
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0198985
Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks
Cited by: 14
Author(s): Yuqin Wu, Jianhui Li, Xuze Qin, Shiqiang Sun, Zhibin Xiao, Xiaoyu Dong, Muhammad Shahid, Dafei Yin, Jianmin Yuan
Software Mentions: 1
Published: about 6 years ago
10.3390/cancers12030685
Vitamin C Restricts the Emergence of Acquired Resistance to EGFR-Targeted Therapies in Colorectal Cancer
Cited by: 39
Author(s): Annalisa Lorenzato, Alessandro Magrì, Vittoria Matafora, Valentina Audrito, Pamela Arcella, Luca Lazzari, Monica Montone, Simona Lamba, Silvia Deaglio, Salvatore Siena, Andrea Bertotti, Livio Trusolino, Ángela Bachi, Federica Di Nicolantonio, Alberto Bardelli, Sabrina Arena
Software Mentions: 1
Published: over 4 years ago
10.3390/cancers12113443
Metabolic Plasticity Is an Essential Requirement of Acquired Tyrosine Kinase Inhibitor Resistance in Chronic Myeloid Leukemia
Cited by: 4
Author(s): Miriam G. Contreras Mostazo, Nina Kurrle, Marta Casado, Dominik C. Fuhrmann, Islam Alshamleh, Björn Häupl, Paloma Martı́n-Sanz, Bernhard Brüne, Hubert Serve, Harald Schwalbe, Frank Schnütgen, Silvia Marín, Marta Cascante
Software Mentions: 1
Published: about 4 years ago
10.3390/cancers12092383
Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic Profiling
Cited by: 9
Author(s): Misol Do, Hongbeom Kim, Dongyoon Shin, Joonho Park, Haeryoung Kim, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: about 4 years ago
10.3390/cancers12061371
Progression-Dependent Altered Metabolism in Osteosarcoma Resulting in Different Nutrient Source Dependencies
Cited by: 9
Author(s): Raphaela Fritsche‐Guenther, Yoann Gloaguen, Marieluise Kirchner, Philipp Mertins, Per‐Ulf Tunn, Jennifer Kirwan
Software Mentions: 1
Published: over 4 years ago
10.3390/cancers13143404
Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic Cancer
Cited by: 2
Author(s): Santosh Renuse, Vijay Sagar Madamsetty, Dong-Gi Mun, Anil K. Madugundu, Smrita Singh, Savita Udainiya, Kiran K. Mangalaparthi, Min‐Sik Kim, Ren Liu, Sunil Kumar, Valery Krasnoperov, Mark J. Truty, Rondell P. Graham, Parkash S. Gill, Debabrata Mukhopadhyay, Akhilesh Pandey
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers13010062
The Extracellular Bone Marrow Microenvironment—A Proteomic Comparison of Constitutive Protein Release by In Vitro Cultured Osteoblasts and Mesenchymal Stem Cells
Cited by: 14
Author(s): Elise Aasebø, Even Birkeland, Frode Selheim, Frode S. Berven, Annette K. Brenner, Øystein Bruserud
Software Mentions: 1
Published: almost 4 years ago
10.3390/cancers11050723
Profiling of Epigenetic Features in Clinical Samples Reveals Novel Widespread Changes in Cancer
Cited by: 19
Author(s): Roberta Noberini, Camilla Restellini, Evelyn Oliva Savoia, Francesco Raimondi, Lavinia Ghiani, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Fausto Maffini, Marta Tagliabue, Mohssen Ansarin, Michela Lupia, Marco Giordano, Daniela Osti, Giuliana Pelicci, Susanna Chiocca, Tiziana Bonaldi
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers13071646
Death Receptor 5 (TNFRSF10B) Is Upregulated and TRAIL Resistance Is Reversed in Hypoxia and Normoxia in Colorectal Cancer Cell Lines after Treatment with Skyrin, the Active Metabolite of Hypericum spp.
Cited by: 7
Author(s): Marián Babinčák, Rastislav Jendželovský, Ján Košuth, Martin Majerník, Jana Vargová, Kamil Mikulášek, Zbyněk Zdráhal, Peter Fedoročko
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers13112727
Modulation of Early Neutrophil Granulation: The Circulating Tumor Cell-Extravesicular Connection in Pancreatic Ductal Adenocarcinoma
Cited by: 9
Author(s): Harrys K.C. Jacob, John Lalith Charles Richard, Rossana Signorelli, Tyler Kashuv, Shweta Lavania, Utpreksha Vaish, Ranjitha Boopathy, Ashley Middleton, Melinda Minucci Boone, Sundaram Ramakrishnan, Vikas Dudeja, Ashok K. Saluja
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers13112840
A Novel Benzopyrane Derivative Targeting Cancer Cell Metabolic and Survival Pathways
Cited by: 3
Author(s): Dana M. Zaher, Wafaa Ramadan, Raafat El‐Awady, Hany A. Omar, Fatema Hersi, Vunnam Srinivasulu, Ibrahim Y. Hachim, Farah Al-Marzooq, Cijo George Vazhappilly, Salim Merali, Carmen Merali, Nelson C. Soares, Paul Schilf, Saleh M. Ibrahim, Taleb H. Al‐Tel
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers13030563
Cysteine-Rich Angiogenic Inducer 61: Pro-Survival Function and Role as a Biomarker for Disseminating Breast Cancer Cells
Cited by: 5
Author(s): Kai Bartkowiak, Isabel Heidrich, Marcel Kwiatkowski, Tobias M. Gorges, Antje Andreas, Maria Geffken, Karl Verpoort, Volkmar Müller, Hartmut Schlüter, Klaus Pantel
Software Mentions: 1
Published: almost 4 years ago
10.3390/cancers12040790
Proteomic Discovery of Biomarkers to Predict Prognosis of High-Grade Serous Ovarian Carcinoma
Cited by: 15
Author(s): Se Ik Kim, Min-A Jung, Kisoon Dan, Sungyoung Lee, Cheol Lee, Hee Seung Kim, Hyun Hoon Chung, Jae Weon Kim, Noh Hyun Park, Yong Sang Song, Dohyun Han, Maria Lee
Software Mentions: 1
Published: over 4 years ago
10.3390/cancers13153890
Mass Spectrometry-Based Proteomic Discovery of Prognostic Biomarkers in Adrenal Cortical Carcinoma
Cited by: 10
Author(s): Han Na Jang, Seong-Yong Moon, Kyeong Cheon Jung, Sang Wan Kim, Hyeyoon Kim, Dohyun Han, Jung Hee Kim
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers13040585
Phenotypic and Proteomic Analysis Identifies Hallmarks of Blood Circulating Extracellular Vesicles in NSCLC Responders to Immune Checkpoint Inhibitors
Cited by: 24
Author(s): Davide Brocco, Paola Lanuti, Damiana Pieragostino, Maria Concetta Cufaro, Pasquale Simeone, Giuseppina Bologna, Pietro Di Marino, Michele De Tursi, Antonino Grassadonia, Luciana Irtelli, Laura De Lellis, Serena Veschi, Rosalba Florio, L. Federici, Marco Marchisio, Sebastianó Miscia, Alessandro Cama, Nicola Tinari, Piero Del Boccio
Software Mentions: 1
Published: almost 4 years ago
10.3390/cancers11081166
Cisplatin-Resistance in Oral Squamous Cell Carcinoma: Regulation by Tumor Cell-Derived Extracellular Vesicles
Cited by: 48
Author(s): Xin Hui Khoo, Ian C. Paterson, Bey Hing Goh, Wai Leng Lee
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers11122032
Gigantol Targets Cancer Stem Cells and Destabilizes Tumors via the Suppression of the PI3K/AKT and JAK/STAT Pathways in Ectopic Lung Cancer Xenografts
Cited by: 33
Author(s): Nattanan Losuwannarak, Arnatchai Maiuthed, Nakarin Kitkumthorn, Asada Leelahavanichkul, Sittiruk Roytrakul, Pithi Chanvorachote
Software Mentions: 1
Published: almost 5 years ago
10.3390/cancers12041018
Moesin (MSN) as a Novel Proteome-Based Diagnostic Marker for Early Detection of Invasive Bladder Urothelial Carcinoma in Liquid-Based Cytology
Cited by: 10
Author(s): Jeong Hwan Park, Cheol Lee, Dohyun Han, Jae Seok Lee, Kyung Min Lee, Min Song, Kwangsoo Kim, Heonyi Lee, Kyung Chul Moon, Youngsoo Kim, Min-A Jung, Jiwon Moon, Hyebin Lee, Han Suk Ryu
Software Mentions: 1
Published: over 4 years ago
10.1016/j.cell.2016.06.015
Pre-assembled Nuclear Pores Insert into the Nuclear Envelope during Early Development
Cited by: 92
Author(s): Bernhard Hampoelz, Marie‐Therese Mackmull, Pedro Machado, Paolo Ronchi, Khanh Huy Bui, Nicole L. Schieber, Rachel Santarella-Mellwig, Aleksandar Necakov, Amparo Andrés-Pons, Jean‐Marc Philippe, Thomas Lecuit, Yannick Schwab, Martin Beck
Software Mentions: 1
Published: over 8 years ago
10.1186/s13578-021-00588-3
Global analysis of HBV-mediated host proteome and ubiquitylome change in HepG2.2.15 human hepatoblastoma cell line
Cited by: 8
Author(s): Shuo Yuan, Tanzeel Yousaf, Xuezhang Tian, Dandan Zheng, Wajeeha Naz, Jiaqi Xu, Yujia Ke, Zuopeng Zhang, Xiaojun Peng, Long Lu, Guihong Sun, Deyin Guo, Min Wang
Software Mentions: 1
Published: over 3 years ago
10.1016/j.chembiol.2019.03.006
Validation and Invalidation of Chemical Probes for the Human N-myristoyltransferases
Cited by: 27
Author(s): Wouter W. Kallemeijn, Gregor A. Lueg, Monica Faronato, Kate S. Hadavizadeh, Andrea Goya Grocin, Ok‐Ryul Song, Michael Howell, Dinis Pedro Calado, Edward W. Tate
Software Mentions: 1
Published: over 5 years ago
10.1016/j.chembiol.2017.07.009
Modulating Protein-Protein Interactions of the Mitotic Polo-like Kinases to Target Mutant KRAS
Cited by: 25
Author(s): A.J. Narvaez, Suzan Ber, Alex T. Crooks, A. N. Emery, B. Hardwick, E.G. Almeida, David J. Huggins, David Perera, Meredith Roberts-Thomson, Roberta Azzarelli, Fiona E. Hood, Ian A. Prior, David W. Walker, Richard J. Boyce, Robert G. Boyle, Samuel P. Barker, C Torrance, Grahame J. McKenzie, Ashok R. Venkitaraman
Software Mentions: 1
Published: over 7 years ago
10.1186/s12964-019-0381-z
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages
Cited by: 9
Author(s): Marion Janschitz, Natalie Romanov, Gina Varnavides, David Maria Hollenstein, Gabriela Gérecová, Gustav Ammerer, Markus Hartl, Wolfgang Reiter
Software Mentions: 1
Published: over 5 years ago
10.1186/s12964-019-0402-y
Protein phosphatase 2A modulates podocyte maturation and glomerular functional integrity in mice
Cited by: 11
Author(s): Xinyuan Zhu, Yuhong Ye, Chengxian Xu, Cunji Gao, Yingying Zhang, Jing Zhou, Weiqiang Lin, Jianhua Mao
Software Mentions: 1
Published: over 5 years ago
10.1080/15384101.2019.1632126
Identification of proteins associated with splicing factors Ntr1, Ntr2, Brr2 and Gpl1 in the fission yeast <i>Schizosaccharomyces pombe</i>
Cited by: 5
Author(s): Ingrid Čipáková, Matus Jurcik, Veronika Rubintova, Marianna Borbova, Barbora Mikolaskova, Jan Jurcik, Jana Bellová, Péter Baráth, Juraj Gregáň, Luboš Čipák
Software Mentions: 1
Published: over 5 years ago
10.1038/s41418-019-0383-9
Loss of Bcl-G, a Bcl-2 family member, augments the development of inflammation-associated colorectal cancer
Cited by: 7
Author(s): Paul M. Nguyen, Laura F. Dagley, Adele Preaudet, Nga Lam, Maybelline Giam, Ka Yee Fung, Kaheina Aizel, Gemma van Duijneveldt, Chin Wee Tan, Yumiko Hirokawa, Hon Yan Kelvin Yip, Christopher G. Love, Ashleigh R. Poh, Akshay A. D’Cruz, Charlotte Burstroem, Rebecca Feltham, Suad M Abdirahman, Kristy Meiselbach, Ronnie Ren Jie Low, Michelle Palmieri, Matthias Ernst, Andrew I. Webb, Tony Burgess, Oliver M. Sieber, Philippe Bouillet, Tracy L. Putoczki
Software Mentions: 1
Published: over 5 years ago
10.1038/s41418-020-0527-y
Drp1 modulates mitochondrial stress responses to mitotic arrest
Cited by: 17
Author(s): Aida Peña‐Blanco, Manuel D. Haschka, Andreas Jenner, Theresia Zuleger, Tassula Proikas‐Cezanne, Andreas Villunger, Ana J. García‐Sáez
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-019-1936-z
TA*p63 and GTAp63 achieve tighter transcriptional regulation in quality control by converting an inhibitory element into an additional transactivation domain
Cited by: 10
Author(s): Susanne Pitzius, Christian Osterburg, Jakob Gebel, Georg Tascher, Björn Malte Schäfer, Huiqing Zhou, Christian Münch, Volker Dötsch
Software Mentions: 1
Published: about 5 years ago
10.1038/s41419-020-03177-3
EMC6 regulates acinar apoptosis via APAF1 in acute and chronic pancreatitis
Cited by: 18
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Zhao-chang Qi, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: about 4 years ago
10.1038/s41419-018-0349-8
DZNep inhibits H3K27me3 deposition and delays retinal degeneration in the rd1 mice
Cited by: 30
Author(s): Shoujun Zheng, Lirong Xiao, Yu Liu, Yujiao Wang, Lin Cheng, Junjun Zhang, Naihong Yan, Danian Chen
Software Mentions: 1
Published: over 6 years ago
10.1038/s41419-020-2645-3
LncRNA ANRIL acts as a modular scaffold of WDR5 and HDAC3 complexes and promotes alteration of the vascular smooth muscle cell phenotype
Cited by: 53
Author(s): Chengxin Zhang, Shangqing Ge, Wei Gong, Jinguo Xu, Zhixin Guo, Zhuang Liu, Xiaotian Gao, Xiaoyong Wei, Shuping Ge
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-2285-7
Alpha-synuclein fragments trigger distinct aggregation pathways
Cited by: 18
Author(s): Tasnim Chakroun, Valentin Evsyukov, Niko-Petteri Nykänen, Matthias Höllerhage, Andreas Schmidt, Frits Kamp, Viktoria Ruf, Wolfgang Wurst, Thomas W. Rösler, Günter U. Höglinger
Software Mentions: 1
Published: almost 5 years ago
10.1038/cddis.2017.265
Isodeoxyelephantopin induces protective autophagy in lung cancer cells via Nrf2-p62-keap1 feedback loop
Cited by: 59
Author(s): Yang Wang, Jing Zhang, Zhi‐Hao Huang, Xiaohui Huang, Wei-Bin Zheng, Xinhua Yin, Yao-Lan Li, Bin Li, Qing‐Yu He
Software Mentions: 1
Published: over 7 years ago
10.1038/s41419-020-2523-z
Formate induces a metabolic switch in nucleotide and energy metabolism
Cited by: 28
Author(s): Kristell Oizel, Jacqueline Tait-Mulder, Jorge Fernández-de-Cossio-Díaz, Matthias Pietzke, Holly Brunton, Sérgio Lilla, Sandeep Dhayade, Dimitris Athineos, Giovanny Rodriguez Blanco, David Sumpton, Gillian Mackay, Karen Blyth, Sara Zanivan, Johannes Meiser, Alexei Vazquez
Software Mentions: 1
Published: over 4 years ago
10.1038/s41420-021-00539-4
The proteolytic landscape of cells exposed to non-lethal stresses is shaped by executioner caspases
Cited by: 4
Author(s): Maria del Carmen Conde Rubio, Roman Mylonas, Christian Widmann
Software Mentions: 1
Published: over 3 years ago
10.1038/celldisc.2016.1
Deubiquitylating enzyme USP9x regulates hippo pathway activity by controlling angiomotin protein turnover
Cited by: 33
Author(s): Hung Thanh Nguyen, Diāna Andrējeva, Rajat Gupta, Chunaram Choudhary, Xin Hong, Pieter J.A. Eichhorn, Anand C Loya, Stephen M. Cohen
Software Mentions: 1
Published: over 8 years ago
10.1038/s41421-018-0041-2
RPS3A positively regulates the mitochondrial function of human periaortic adipose tissue and is associated with coronary artery diseases
Cited by: 18
Author(s): Yan Tang, Yi He, Chen Li, Wenjuan Mu, Ying Zou, Conghui Liu, Shuwen Qian, Fuchuang Zhang, Jiabao Pan, Yina Wang, Haiyan Huang, Dongning Pan, Pengyuan Yang, Ju Mei, Rong Zeng, Qi‐Qun Tang
Software Mentions: 1
Published: over 6 years ago
10.1016/j.chom.2012.06.005
Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis
Cited by: 163
Author(s): Matthew L. Jones, Mark O. Collins, David Goulding, Jyoti S. Choudhary, Julian C. Rayner
Software Mentions: 1
Published: over 12 years ago
10.1016/j.cmet.2013.04.010
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2
Cited by: 328
Author(s): Sean J. Humphrey, Guang Yang, Pengyi Yang, Daniel J. Fazakerley, Jacqueline Stöckli, Pengyi Yang, David E. James
Software Mentions: 1
Published: over 11 years ago
10.1007/s00018-021-03845-3
The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand release
Cited by: 8
Author(s): Stefan Düsterhöft, Selcan Kahveci-Türköz, Justyna Wozniak, Anke Seifert, Petr Kašpárek, Henrike Ohm, Shixin Liu, Jana Kopkanova, Juliane Lokau, Christoph Garbers, Christian Preisinger, Radislav Sedláček, Matthew Freeman, Andreas Ludwig
Software Mentions: 1
Published: over 3 years ago
10.1016/j.celrep.2020.108235
Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC Degradation
Cited by: 27
Author(s): Timothy K. Soh, Colin Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, C. L. Smith, Edward Emmott, Robin Antrobus, Stephen C. Graham, Michael P. Weekes, Colin M. Crump
Software Mentions: 1
Published: about 4 years ago
10.1016/j.celrep.2016.02.040
Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal Autophagy
Cited by: 56
Author(s): Tian Zhang, Shichen Shen, Jun Qu, Sina Ghaemmaghami
Software Mentions: 1
Published: over 8 years ago
10.1016/j.celrep.2017.03.020
Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome Replication
Cited by: 37
Author(s): Marija Marić, Progya P. Mukherjee, Michael H. Tatham, Ronald T. Hay, Karim Labib
Software Mentions: 1
Published: over 7 years ago
10.1016/j.celrep.2018.09.007
Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination
Cited by: 53
Author(s): Tea Kecman, Krzysztof Kuś, Dong-Hyuk Heo, K Duckett, Adrien Birot, Sabrina Liberatori, Shabaz Mohammed, Lucía Geis-Asteggiante, Carol V. Robinson, Lidia Vasiljeva
Software Mentions: 1
Published: about 6 years ago
10.1016/j.celrep.2019.01.027
Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex
Cited by: 27
Author(s): Ye Dee Tay, Marcin Leda, Christos Spanos, Juri Rappsilber, Andrew B. Goryachev, Kenneth E. Sawin
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.celrep.2018.10.104
Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly Checkpoint
Cited by: 11
Author(s): Thomas Wild, Magda Budzowska, Susanne Hellmuth, Susana Eibes, Gopal Karemore, Marin Barišić, Olaf Stemmann, Chunaram Choudhary
Software Mentions: 1
Published: about 6 years ago
10.1016/j.celrep.2018.08.092
Interplay of Histone Marks with Serine ADP-Ribosylation
Cited by: 72
Author(s): Edward Bartlett, Juán José Bonfiglio, Evgeniia Prokhorova, Thomas Colby, Florian Zobel, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: about 6 years ago
10.1038/s41422-020-0294-9
The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasm
Cited by: 21
Author(s): Anne Ramat, Maria-Rosa Garcia-Silva, Camille Jahan, Rima Naït-Saïdi, Jérémy Dufourt, Céline Garret, Aymeric Chartier, Julie Cremaschi, Vipul Patel, Mathilde Decourcelle, Amandine Bastide, François Juge, Martine Simonelig
Software Mentions: 1
Published: over 4 years ago
10.1007/s12192-015-0583-2
Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs
Cited by: 67
Author(s): Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, Pierre Goloubinoff
Software Mentions: 1
Published: over 9 years ago
10.1016/j.tcsw.2019.100023
Assembly and disassembly of Aspergillus fumigatus conidial rodlets
Cited by: 25
Author(s): Isabel Valsecchi, Joey Lai, Emmanuel Stephen-Victor, Ariane Pillé, Audrey Beaussart, Victor Lo, Chi L.L. Pham, Vishukumar Aimanianda, Ann H. Kwan, Magalie Duchateau, Quentin Giai Gianetto, Mariette Matondo, Mélanie Lehoux, Donald C. Sheppard, Yves F. Dufrêne, Jagadeesh Bayry, J. Iñaki Guijarro, Margaret Sunde, Jean‐Paul Latgé
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.cels.2017.09.011
A Compendium of Co-regulated Protein Complexes in Breast Cancer Reveals Collateral Loss Events
Cited by: 44
Author(s): Colm J. Ryan, Susan Kennedy, Ilirjana Bajrami, David Matallanas, Christopher J. Lord
Software Mentions: 1
Published: about 7 years ago
10.3390/cells8050512
Characterization of Lipid and Lipid Droplet Metabolism in Human HCC
Cited by: 53
Author(s): Nikolaus Berndt, Johannes Eckstein, Niklas Heucke, Robert Gajowski, Martin Stockmann, David Meierhofer, Hermann‐Georg Holzhütter
Software Mentions: 1
Published: over 5 years ago
10.3390/cells9020267
Q-Cell Glioblastoma Resource: Proteomics Analysis Reveals Unique Cell-States Are Maintained in 3D Culture
Cited by: 11
Author(s): Rochelle C.J. D’Souza, Carolin Offenhäuser, Jasmin Straube, Ulrich Baumgartner, Anja Kordowski, Yuchen Li, Brett W. Stringer, Hamish Alexander, Zarnie Lwin, Po-Ling Inglis, Rosalind L. Jeffree, Terrance G. Johns, Andrew W. Boyd, Bryan W. Day
Software Mentions: 1
Published: almost 5 years ago
10.3390/cells9112416
BAG3 Proteomic Signature under Proteostasis Stress
Cited by: 14
Author(s): Christof Hiebel, Elisabeth Stürner, Meike Hoffmeister, Georg Tascher, Mario Schwarz, Heike Nagel, Christian Behrends, Christian Münch, Christian Behl
Software Mentions: 1
Published: about 4 years ago
10.3390/cells9112506
Amyloid-β Precursor Protein APP Down-Regulation Alters Actin Cytoskeleton-Interacting Proteins in Endothelial Cells
Cited by: 6
Author(s): Emma Ristori, Vittoria Cicaloni, Laura Salvini, Laura Tinti, Cristina Tinti, Michael Simons, Federico Corti, Sandra Donnini, Marina Ziche
Software Mentions: 1
Published: about 4 years ago
10.3390/cells9091927
FGF2 Inhibits Early Pancreatic Lineage Specification during Differentiation of Human Embryonic Stem Cells
Cited by: 7
Author(s): Rabea Dettmer, Karsten Cirksena, Julia Münchhoff, Jasmin Kresse, Ulf Diekmann, Isabell Niwolik, Falk F. R. Buettner, Ortwin Naujok
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9040847
Structural Similarity with Cholesterol Reveals Crucial Insights into Mechanisms Sustaining the Immunomodulatory Activity of the Mycotoxin Alternariol
Cited by: 19
Author(s): Giorgia Del Favero, Raphaela Maria Mayer, Luca Dellafiora, Lukas Janker, Laura Niederstaetter, Chiara Dall’Asta, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9061517
In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis
Cited by: 17
Author(s): Cheol Woo Min, Joonho Park, Jin‐Woo Bae, Ganesh Kumar Agrawal, Randeep Rakwal, Youngsoo Kim, Pingfang Yang, Sun Tae Kim, Ravi Gupta
Software Mentions: 1
Published: over 4 years ago
10.3390/cells9010227
Establishment and Characterization of Paired Primary Cultures of Human Pancreatic Cancer Cells and Stellate Cells Derived from the Same Tumor
Cited by: 4
Author(s): Manoj Amrutkar, Emma Kristine Larsen, Monica Aasrum, Anette Vefferstad Finstadsveen, Per Arne Andresen, Caroline Verbeke
Software Mentions: 1
Published: almost 5 years ago
10.3390/cells8010023
Commonly Used Pancreatic Stellate Cell Cultures Differ Phenotypically and in Their Interactions with Pancreatic Cancer Cells
Cited by: 24
Author(s): Daniela Lenggenhager, Manoj Amrutkar, Petra Sántha, Monica Aasrum, Matthias Löhr, Ivar P. Gladhaug, Caroline Verbeke
Software Mentions: 1
Published: almost 6 years ago
10.3390/cells10071616
Cockayne Syndrome-Associated CSA and CSB Mutations Impair Ribosome Biogenesis, Ribosomal Protein Stability, and Global Protein Folding
Cited by: 11
Author(s): Mingyue Qiang, Fatima Khalid, Tamara Phan, Christina Ludwig, Karin Scharffetter‐­Kochanek, Sebastian Iben
Software Mentions: 1
Published: over 3 years ago
10.3390/cells8020191
The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells
Cited by: 5
Author(s): J. Nováková, Pavel Talacko, Petr Novák, Karel Vališ
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-83666-3
Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells
Cited by: 8
Author(s): Kiall F. Suazo, Angela Jeong, Mina Ahmadi, Caroline Brown, Wenhui Qu, Ling Li, Mark D. Distefano
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-84385-5
An integrated transcriptomic and proteomic approach to identify the main Torymus sinensis venom components
Cited by: 15
Author(s): Carmen Scieuzo, Rosanna Salvia, Antonio Franco, Marco Pezzi, Flora Cozzolino, Milvia Chicca, Chiara Scapoli, Heiko Vogel, Maria Monti, Chiara Ferracini, Pietro Pucci, Alberto Alma, Patrizia Falabella
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85004-z
Protein network analyses of pulmonary endothelial cells in chronic thromboembolic pulmonary hypertension
Cited by: 8
Author(s): Sarath Babu Nukala, Olga Tura-Ceide, Giancarlo Aldini, Valérie F. E. D. Smolders, Isabel Blanco, Víctor I. Peinado, Manuel Castellà, Joan Albert Barberà, Alessandra Altomare, Giovanna Baron, Marina Carini, Marta Cascante, Alfonsina D’Amato
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85879-y
Global analysis of lysine 2-hydroxyisobutyrylation in wheat root
Cited by: 5
Author(s): Feng Bo, Shengdong Li, Zongshuai Wang, Fengming Cao, Wenhua Zheng, Chunhua Gao, Li Geng, Kong Ling'an
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85988-8
Comparative proteomic profiling of newly acquired, virulent and attenuated Neoparamoeba perurans proteins associated with amoebic gill disease
Cited by: 3
Author(s): Kerrie Ní Dhufaigh, Eugene Dillon, Natasha A. Botwright, Anita Talbot, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-87003-6
Proteomic comparison between different tissue preservation methods for identification of promising biomarkers of urothelial bladder cancer
Cited by: 5
Author(s): Alberto Valdés, Athanasios Bitzios, Eszter Kassa, Ganna Shevchenko, Alexander Falk, Per‐Uno Malmström, Anca Dragomir, Ulrika Segersten, Sara Bergström Lind
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-89597-3
The proteome of the human endolymphatic sac endolymph
Cited by: 4
Author(s): Christine Ölander, Jesper Edvardsson Rasmussen, Per Eriksson, Göran Laurell, Helge Rask‐Andersen, Jonas Bergquist
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-91664-8
Characterization of hyperglycemia due to sub-chronic administration of red ginseng extract via comparative global proteomic analysis
Cited by: 2
Author(s): Ann-Yae Na, Jung Jae Jo, Oh Kwang Kwon, Piljoung Cho, Yan Gao, Ju-Hyun Kim, Kyu Min Kim, Sung Hwan Ki, Sangkyu Lee
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-90149-y
Next generation proteomics with drug sensitivity screening identifies sub-clones informing therapeutic and drug development strategies for multiple myeloma patients
Cited by: 6
Author(s): Ciara Tierney, Despina Bazou, Muntasir Mamun Majumder, Pekka Anttila, Raija Silvennoinen, Caroline A. Heckman, Paul Dowling, Peter O’Gorman
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-92433-3
Identification of cis-acting determinants mediating the unconventional secretion of tau
Cited by: 11
Author(s): Taxiarchis Katsinelos, William A. McEwan, Thomas R. Jahn, Walter Nickel
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-95354-3
A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing
Cited by: 5
Author(s): Xin Liu, Ye Zhang, Lucas D. Ward, Qinghong Yan, Tanggis Bohnuud, Roberto Hernández, Socheata Lao, Jing Yuan, Fan Fan
Software Mentions: 1
Published: over 3 years ago