cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1186/s12865-015-0134-8

Impact of microRNA-130a on the neutrophil proteome
Cited by: 9
Author(s): Claus Pedersen, Jan C. Refsgaard, Ole Østergaard, Lars Juhl Jensen, Niels H H Heegaard, Niels Borregaard, Jack B. Cowland
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12866-021-02091-8

Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production
Cited by: 3
Author(s): Arjun Sukumaran, Samanta Pladwig, Jennifer Geddes‐McAlister
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-020-02016-x

Phenotypic and proteomic approaches of the response to iron-limited condition in Staphylococcus lugdunensis
Cited by: 6
Author(s): Marion Aubourg, Anne Dhalluin, François Gravey, Marine Pottier, Nicolas Thomy, Benoı̂t Bernay, Didier Goux, Matthieu Martineau, Jean‐Christophe Giard
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12866-017-1004-8

Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis
Cited by: 8
Author(s): Getachew Tesfaye Beyene, Shewit Kalayou, Tahira Riaz, Tone Tønjum
Software Mentions: 1
Published: over 9 years ago

10.1186/s12866-017-1034-2

Site-specific His/Asp phosphoproteomic analysis of prokaryotes reveals putative targets for drug resistance
Cited by: 18
Author(s): Shu-Jung Lai, I-Fan Tu, Wan-Chen Wu, Jhih-Tian Yang, Louis Y. P. Luk, Mei‐Chin Lai, Yu‐Hsuan Tsai, Shih‐Hsiung Wu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12866-018-1208-6

Characterisation of the cellular and proteomic response of Galleria mellonella larvae to the development of invasive aspergillosis
Cited by: 24
Author(s): Gerard Sheehan, Gráinne Clarke, Kevin Kavanagh
Software Mentions: 1
Published: over 8 years ago

10.1186/s12891-018-2380-4

In vitro chondrogenic potency of surplus chondrocytes from autologous transplantation procedures does not predict short-term clinical outcomes
Cited by: 6
Author(s): Ashraful Islam, Vegard Fossum, Ann Kristin Hansen, Ilona Urbárová, Gunnar Knutsen, Iñigo Martínez-Zubiaurre
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-019-1633-1

Soybean (Glycine max L. Merr.) seedlings response to shading: leaf structure, photosynthesis and proteomic analysis
Cited by: 49
Author(s): Yuanfang Fan, Junxu Chen, Zhong Lin Wang, Tingting Tan, Shenglan Li, Jiafeng Li, Beibei Wang, Jiawei Zhang, Yajiao Cheng, Xiaoling Wu, Wenyu Yang, Feng Yang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-020-02352-0

Low red/far-red ratio as a signal promotes carbon assimilation of soybean seedlings by increasing the photosynthetic capacity
Cited by: 34
Author(s): Feng Yang, Qinlin Liu, Yajiao Cheng, Lingyang Feng, Xiaoling Wu, Yuanfang Fan, Muhammad Ali Raza, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-018-1419-x

Comparative proteomic analysis of maize (Zea mays L.) seedlings under rice black-streaked dwarf virus infection
Cited by: 17
Author(s): Runqing Yue, Chengpeng Lu, Xiaohua Han, Songlin Guo, Shufeng Yan, Lu Liu, Fu Xiaolei, Nana Chen, Xinhai Guo, Haifeng Chi, Shuanggui Tie
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-019-2072-8

Quantitative succinyl-proteome profiling of Chinese hickory (Carya cathayensis) during the grafting process
Cited by: 10
Author(s): Huwei Yuan, Juanjuan Chen, Ying Yang, Chenjia Shen, Dongpo Xu, Junfeng Wang, Daoliang Yan, Yi He, Bingsong Zheng
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-019-1845-4

Comparative proteomic analysis provides novel insights into the regulation mechanism underlying papaya (Carica papaya L.) exocarp during fruit ripening process
Cited by: 8
Author(s): Jiang Bian, Siyan Ou, Ling Xu, Wanyi Mai, Meijun Ye, Haiping Gu, Tao Zhang, Changchun Yuan, Chenjia Shen, Jinxiang Wang, Kaidong Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-015-0668-1

Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana
Cited by: 29
Author(s): Matthias Nagler, Ella Nukarinen, Wolfram Weckwerth, Thomas Nägele
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12888-020-02540-0

Comparison of serum protein profiles between major depressive disorder and bipolar disorder
Cited by: 26
Author(s): Sang Jin Rhee, Dohyun Han, Yunna Lee, Hye Young Kim, Junhee Lee, Kangeun Lee, Hyunsuk Shin, Hyeyoon Kim, Tae Young Lee, Minah Kim, Se Hyun Kim, Yong Min Ahn, Jun Soo Kwon, Kyooseob Ha
Software Mentions: 1
Published: over 6 years ago

10.1042/BCJ20180043

Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
Cited by: 54
Author(s): Yugo Tsuchiya, Alexander Zhyvoloup, Jovana Baković, Naam Thomas, Bess Yi Kun Yu, Sayoni Das, Christine Orengo, Clare L. Newell, John M. Ward, Giorgio Saladino, Federico Comitani, Francesco Luigi Gervasio, О. М. Маланчук, А. И. Хоруженко, Valeriy Filonenko, Sew Y. Peak‐Chew, Mark Skehel, Ivan Gout
Software Mentions: 1
Published: over 8 years ago

10.1042/BCJ20160502

TLR and TNF-R1 activation of the MKK3/MKK6–p38α axis in macrophages is mediated by TPL-2 kinase
Cited by: 50
Author(s): Michael J. Pattison, Olivia Mitchell, Helen Flynn, Chao-Sheng Chen, Huei-Ting Yang, Hakem Ben-Addi, Stefan Boeing, Ambrosius P Snijders, Steve Ley
Software Mentions: 1
Published: about 10 years ago

10.1186/s12575-016-0043-0

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients
Cited by: 48
Author(s): Maria Hernandez-Valladares, Elise Aasebø, Olav Mjaavatten, Marc Vaudel, Øystein Bruserud, Frode S. Berven, Frode Selheim
Software Mentions: 1
Published: over 10 years ago

10.1186/s40659-021-00327-5

Proteome profiling of different rat brain regions reveals the modulatory effect of prolonged maternal separation on proteins involved in cell death-related processes
Cited by: 6
Author(s): Zdeňka Drastichová, Vladimı́r Rudajev, Gergely Pallag, Jiřı́ Novotný
Software Mentions: 1
Published: over 5 years ago

10.3390/biology10010058

Does KRAS Play a Role in the Regulation of Colon Cancer Cells-Derived Exosomes?
Cited by: 2
Author(s): Shu Kee Eng, Ilma Ruzni Imtiaz, Bey Hing Goh, Long Chiau Ming, Ya Chee Lim, Wai Leng Lee
Software Mentions: 1
Published: over 5 years ago

10.1016/j.biomaterials.2018.05.032

Neighboring cells override 3D hydrogel matrix cues to drive human MSC quiescence
Cited by: 33
Author(s): Sandra Reis Ferreira, Peter Faull, Alexis J. Seymour, Tracy T. L. Yu, Sandra Loaiza, Holger W. Auner, Ambrosius P. Snijders, Eileen Gentleman
Software Mentions: 1
Published: about 8 years ago

10.1155/2014/916212

Power of Proteomics in Linking Oxidative Stress and Female Infertility
Cited by: 73
Author(s): Sajal Gupta, Jana Ghulmiyyah, Rakesh K. Sharma, Jessica El Halabi, Ashok Agarwal
Software Mentions: 1
Published: almost 13 years ago

10.1155/2019/3950628

Quantitative Proteomic Analysis Reveals the Deregulation of Nicotinamide Adenine Dinucleotide Metabolism and CD38 in Inflammatory Bowel Disease
Cited by: 47
Author(s): Longgui Ning, Siyu Guo, Zeyu Sun, Fenming Zhang, Chengfu Xu, Xinhe Lou, Sha Li, Haojie Du, Hongtan Chen, Guofan Xu
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/7052456

Label-Free LC-MS/MS Proteomics Analyses Reveal Proteomic Changes AccompanyingMSTNKO in C2C12 Cells
Cited by: 6
Author(s): Lamei Wang, Yu Huang, Xiaolong Wang
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/3689091

Mass Spectrometry Amyloid Typing Is Reproducible across Multiple Organ Sites
Cited by: 15
Author(s): Dušan Holub, Pavla Flodrová, Tomáš Pika, Patrik Flodr, Marián Hajdúch, Petr Džubák
Software Mentions: 1
Published: over 7 years ago

10.3390/biomedicines9091145

Transgelin Contributes to a Poor Response of Metastatic Renal Cell Carcinoma to Sunitinib Treatment
Cited by: 3
Author(s): Pavla Bouchalová, Jindřich Beránek, Petr Lapčík, David Potěšil, Ján Podhorec, Alexandr Poprach, Pavel Bouchal
Software Mentions: 1
Published: about 5 years ago

10.3390/biomedicines8080249

Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper
Cited by: 16
Author(s): Vladislav V. Babenko, Rustam H. Ziganshin, Christoph Weise, Igor A. Dyachenko, Elvira R. Shaykhutdinova, А. Н. Мурашев, Maxim N. Zhmak, Vladislav G. Starkov, Anh Hoang, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 1
Published: about 6 years ago

10.3390/biomedicines9081013

Regulation of the HTRA2 Protease Activity by an Inhibitory Antibody-Derived Peptide Ligand and the Influence on HTRA2-Specific Protein Interaction Networks in Retinal Tissues
Cited by: 7
Author(s): Carsten Schmelter, Kristian Nzogang Fomo, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: about 5 years ago

10.3390/biomedicines8080246

Mass-Spectrometry Based Proteome Comparison of Extracellular Vesicle Isolation Methods: Comparison of ME-kit, Size-Exclusion Chromatography, and High-Speed Centrifugation
Cited by: 30
Author(s): Anders Askeland, Anne Borup, Ole Østergaard, Jesper V. Olsen, Sigrid Marie Lund, Gunna Christiansen, Søren Risom Kristensen, Niels H. H. Heegaard, Shona Pedersen
Software Mentions: 1
Published: about 6 years ago

10.3390/biom11010113

Eicosanoid Content in Fetal Calf Serum Accounts for Reproducibility Challenges in Cell Culture
Cited by: 11
Author(s): Laura Niederstaetter, Benjamin Neuditschko, Julia Brunmair, Lukas Janker, Andrea Bileck, Giorgia Del Favero, Christopher Gerner
Software Mentions: 1
Published: over 5 years ago

10.3390/biom11081230

Epithelial Cell Line Derived from Endometriotic Lesion Mimics Macrophage Nervous Mechanism of Pain Generation on Proteome and Metabolome Levels
Cited by: 4
Author(s): Benjamin Neuditschko, Marlene Leibetseder, Julia Brunmair, Gerhard Hagn, Lukas Skos, Marlene C. Gerner, Samuel M. Meier‐Menches, Iveta Yotova, Christopher Gerner
Software Mentions: 1
Published: about 5 years ago

10.3390/biom11081094

What Antarctic Plants Can Tell Us about Climate Changes: Temperature as a Driver for Metabolic Reprogramming
Cited by: 14
Author(s): Laura Bertini, Flora Cozzolino, Sara Proietti, Gaia Salvatore Falconieri, Ilaria Iacobucci, Rosanna Salvia, Patrizia Falabella, Maria Monti, Carla Caruso
Software Mentions: 1
Published: about 5 years ago

10.3390/biom11020164

LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome
Cited by: 23
Author(s): Joseph Gillen, Thunnicha Ondee, Devikala Gurusamy, Jiraphorn Issara-Amphorn, Nathan P. Manes, Sung Hwan Yoon, Asada Leelahavanichkul, Aleksandra Nita‐Lazar
Software Mentions: 1
Published: over 5 years ago

10.3390/biom10091282

Different Research Approaches in Unraveling the Venom Proteome of Naja ashei
Cited by: 7
Author(s): Konrad K. Hus, Łukasz Marczak, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Aleksandra Bocian
Software Mentions: 1
Published: about 6 years ago

10.3390/biom10111473

New Antibacterial Peptides from the Freshwater Mollusk Pomacea poeyana (Pilsbry, 1927)
Cited by: 13
Author(s): Melaine González García, Armando A. Rodríguez, Annia Alba, Antonio A. Vázquez, Fidel Ernesto Morales Vicente, Julio A. Perez-Erviti, Barbara Spellerberg, Steffen Stenger, Mark Grieshober, Carina Conzelmann, Jan Münch, Heinz Fabian Raber, Dennis Kubiczek, Frank Rosenau, Sebastian Wiese, Ludger Ständker, Anselmo J. Otero‐González
Software Mentions: 1
Published: almost 6 years ago

10.3390/biom10060836

Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis
Cited by: 6
Author(s): Jayaseelan Murugaiyan, Murat Eravci, Christoph Weise, Uwe Roesler, Lisa D. Sprague, Heinrich Neubauer, Gamal Wareth
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-020-01748-2

Integration of proteome and transcriptome refines key molecular processes underlying oil production in Nannochloropsis oceanica
Cited by: 21
Author(s): Wuxin You, Li Wei, Yanhai Gong, Mohamed El Hajjami, Jian Xu, Ansgar Poetsch
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-021-02030-9

A novel Penicillium sumatraense isolate reveals an arsenal of degrading enzymes exploitable in algal bio-refinery processes
Cited by: 8
Author(s): Moira Giovannoni, Ilaria Larini, Valentina Scafati, Anna Scortica, Monica Compri, Daniela Pontiggia, Giacomo Zapparoli, Nicola Vitulo, Manuel Benedetti, Benedetta Mattei
Software Mentions: 1
Published: about 5 years ago

10.1186/s13068-017-0949-z

Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii
Cited by: 38
Author(s): Valentin Roustan, Shiva Bakhtiari, Pierre-Jean Roustan, Wolfram Weckwerth
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13068-019-1522-8

Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation
Cited by: 21
Author(s): Zhenxing Ren, Wuxin You, Shenshen Wu, Ansgar Poetsch, Chenggang Xu
Software Mentions: 1
Published: about 7 years ago

10.1186/s13068-019-1416-9

Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium
Cited by: 22
Author(s): David A. Russo, Julie A Z Zedler, Daniel Wittmann, Benedikt Kb Möllers, Raushan Kumar Singh, Tanveer S. Batth, Bart van Oort, Jesper V. Olsen, Morten J. Bjerrum, Poul Erik Jensen
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-019-1447-2

Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes
Cited by: 9
Author(s): Olga Zhivin-Nissan, Bareket Dassa, Ely Morag, Meital Kupervaser, Yishai Levin, Edward A. Bayer
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-016-0658-z

Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose
Cited by: 81
Author(s): Ning Zhu, Jinshui Yang, Lei Ji, Jiawen Liu, Yang Yi, Hongli Yuan
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41416-019-0384-y

Tumour-reactive T cell subsets in the microenvironment of ovarian cancer
Cited by: 43
Author(s): Marie Christine Wulff Westergaard, Rikke Andersen, Chloé Chong, Julie Westerlin Kjeldsen, Magnus Pedersen, Christina Friese, Thomas Hasselager, Henrik Lajer, George Coukos, Michal Bassani-Sternberg, Marco Donia, Inge Marie Svane
Software Mentions: 1
Published: over 7 years ago

10.1186/s13058-016-0732-2

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples
Cited by: 9
Author(s): Sofia Waldemarson, Emila Kurbasic, Morten Krogh, Paolo Cifani, Tord Berggård, Åke Borg, Peter James
Software Mentions: 1
Published: over 10 years ago

10.1186/s13058-017-0924-4

Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells
Cited by: 7
Author(s): Asfa Alli-Shaik, Sheena Wee, Lina H.K. Lim, Jayantha Gunaratne
Software Mentions: 1
Published: almost 9 years ago

10.1111/cns.13570

Comparative bioinformatics analysis between proteomes of rabbit aneurysm model and human intracranial aneurysm with label‐free quantitative proteomics
Cited by: 7
Author(s): Yingjun Liu, Yaying Song, Peixi Liu, Sichen Li, Yuan Shi, Guangrong Yu, Kai Quan, Zhiyuan Fan, Peiliang Li, Qingzhu An, Wei Zhu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40170-015-0135-3

The rate of glycolysis quantitatively mediates specific histone acetylation sites
Cited by: 116
Author(s): Ahmad A. Cluntun, He Huang, Lunzhi Dai, Xiaojing Liu, Yingming Zhao, Jason W. Locasale
Software Mentions: 1
Published: about 11 years ago

10.1186/s40170-020-00228-3

The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis
Cited by: 5
Author(s): Jacqueline Tait-Mulder, Kelly Hodge, David Sumpton, Sara Zanivan, Alexei Vazquez
Software Mentions: 1
Published: about 6 years ago

10.1038/leu.2013.361

Differential expression of miR-17∼92 identifies BCL2 as a therapeutic target in BCR-ABL-positive B-lineage acute lymphoblastic leukemia
Cited by: 51
Author(s): Michaela Scherr, Alex Elder, Karin Battmer, David Barzan, Simon Bomken, Melanie Ricke‐Hoch, Arne Schröder, Letizia Venturini, Helen J. Blair, Josef Vormoor, Oliver G. Ottmann, Arnold Ganser, Andreas Pich, Denise Hilfiker‐Kleiner, Olaf Heidenreich, Matthias Eder
Software Mentions: 1
Published: almost 13 years ago

10.3390/life4010035

Setting the Stage for Habitable Planets
Cited by: 3
Author(s): Guillermo González
Software Mentions: 1
Published: over 12 years ago

10.3390/life11070683

Proteomic Analysis Unveils Expressional Changes in Cytoskeleton- and Synaptic Plasticity-Associated Proteins in Rat Brain Six Months after Withdrawal from Morphine
Cited by: 12
Author(s): Zdeňka Drastichová, Lucie Hejnová, Radka Moravcová, Jiřı́ Novotný
Software Mentions: 1
Published: about 5 years ago

10.26508/lsa.201900422

Pseudomonas aeruginosalectin LecB impairs keratinocyte fitness by abrogating growth factor signalling
Cited by: 11
Author(s): Alessia Landi, Muriel Mari, Svenja Kleiser, Tobias Wolf, Christine Gretzmeier, Isabel Wilhelm, Dimitra Kiritsi, Roland Thünauer, Roger Geiger, Alexander Nyström, Fulvio Reggiori, Julie Claudinon, Winfried Römer
Software Mentions: 1
Published: almost 7 years ago

10.26508/lsa.202000847

Peptide-based quorum sensing systems in Paenibacillus polymyxa
Cited by: 11
Author(s): Maya Voichek, Sandra Maaß, Tobias Kroniger, Dörte Becher, Rotem Sorek
Software Mentions: 1
Published: about 6 years ago

10.26508/lsa.201800219

Mitochondrial stress response triggered by defects in protein synthesis quality control
Cited by: 22
Author(s): Uwe Richter, Kah Ying Ng, Fumi Suomi, Paula Marttinen, Tiina Turunen, Christopher B. Jackson, Anu Suomalainen, Helena Vihinen, Eija Jokitalo, Tuula A. Nyman, Marita A. Isokallio, James B. Stewart, Cecilia Mancini, Alfredo Brusco, Sara Seneca, Anne Lombès, Robert W. Taylor, Brendan J. Battersby
Software Mentions: 1
Published: over 7 years ago

10.26508/lsa.201800070

Proteomics and C9orf72 neuropathology identify ribosomes as poly-GR/PR interactors driving toxicity
Cited by: 81
Author(s): Hannelore Hartmann, Daniel Hornburg, Mareike Czuppa, Jakob Bader, Meike Michaelsen, Daniel Farny, Thomas Arzberger, Matthias Mann, Felix Meissner, Dieter Edbauer
Software Mentions: 1
Published: over 8 years ago

10.1186/s12944-020-01350-3

Effect of niacin monotherapy on high density lipoprotein composition and function
Cited by: 7
Author(s): Scott M. Gordon, Marcelo Amar, Kianoush Jeiran, Michael Stagliano, Emma Staller, Martin P. Playford, Nehal N. Mehta, Tomáš Vaisar, Alan T. Remaley
Software Mentions: 1
Published: about 6 years ago

10.3390/md19080420

Large-Scale Plasma Peptidomic Profiling Reveals a Novel, Nontoxic, Crassostrea hongkongensis-Derived Antimicrobial Peptide against Foodborne Pathogens
Cited by: 7
Author(s): Fan Mao, Yongbo Bao, Nai-Kei Wong, Minwei Huang, Kunna Liu, Xiangyu Zhang, Zhuo Yang, Wenjie Yi, Xiao Ou Shu, Zhiming Xiang, Yu Zhou, Yang Zhang
Software Mentions: 1
Published: about 5 years ago

10.3390/md18070362

Shotgun Proteomics of Ascidians Tunic Gives New Insights on Host–Microbe Interactions by Revealing Diverse Antimicrobial Peptides
Cited by: 8
Author(s): Ana Lemos de Matos, Dany Domínguez-Pérez, Daniela Almeida, Guillermı́n Agüero-Chapin, Alexandre Campos, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 1
Published: about 6 years ago

10.3390/membranes11030199

Trastuzumab Modulates the Protein Cargo of Extracellular Vesicles Released by ERBB2+ Breast Cancer Cells
Cited by: 5
Author(s): Silvia Marconi, Sara Santamaria, Martina Bartolucci, Sara Stigliani, Cinzia Aiello, Maria Cristina Gagliani, Grazia Bellese, Andrea Petretto, Katia Cortese, Patrizio Castagnola
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo10040146

Acetylation of Phenylalanine Hydroxylase and Tryptophan 2,3-Dioxygenase Alters Hepatic Aromatic Amino Acid Metabolism in Weaned Piglets
Cited by: 0
Author(s): Lu Huang, Weilei Yao, Tongxin Wang, Juan Li, Qiongyu He, Feiruo Huang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.mex.2018.05.013

Gel-free sample preparation techniques and bioinformatic enrichment analysis to in depth characterise the cell wall proteome of mycobacteria
Cited by: 3
Author(s): Clemens Hermann, Alexander D. Giddey, Andrew J. M. Nel, Nelson C. Soares, Jonathan M. Blackburn
Software Mentions: 1
Published: almost 9 years ago

10.1111/1751-7915.13476

Development of omics‐based protocols for the microbiological characterization of multi‐strain formulations marketed as probiotics: the case of VSL#3
Cited by: 27
Author(s): Diego Mora, Rossella Filardi, Stefania Arioli, Sjef Boeren, Steven Aalvink, Willem M. de Vos
Software Mentions: 1
Published: about 7 years ago

10.15698/mic2017.10.593

Identification of SUMO conjugation sites in the budding yeast proteome
Cited by: 16
Author(s): Miguel Esteras, I-Chun Liu, Ambrosius P. Snijders, Adam Jarmuz, Luís Aragón
Software Mentions: 1
Published: about 9 years ago

10.1186/s12934-016-0417-7

Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain
Cited by: 66
Author(s): Quinn Dickinson, Scott Bottoms, Li Hinchman, Sean J. McIlwain, Sheena Li, Chad L. Myers, Charles Boone, Joshua J. Coon, Alexander S. Hebert, Trey K. Sato, Robert Landick, Jeff S. Piotrowski
Software Mentions: 1
Published: over 10 years ago

10.1186/s12934-020-01408-y

Improving the fermentable sugar yields of wheat straw by high-temperature pre-hydrolysis with thermophilic enzymes of Malbranchea cinnamomea
Cited by: 9
Author(s): Ning Zhu, Hongmei Jin, Xiangbin Kong, Yanyun Zhu, Xiaomei Ye, Xi Yao, Jing Du, Bingqing Li, Menghan Lou, Ghulam Mustafa Shah
Software Mentions: 1
Published: about 6 years ago

10.1186/s12934-017-0848-9

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast
Cited by: 13
Author(s): Scott Bottoms, Quinn Dickinson, Mick McGee, Li Hinchman, Alan Higbee, Alex S. Hebert, Jose Serate, Dan Xie, Yaoping Zhang, Joshua J. Coon, Chad L. Myers, Robert Landick, Jeff S. Piotrowski
Software Mentions: 1
Published: over 8 years ago

10.1099/mic.0.000892

Candida albicans increases the pathogenicity of Staphylococcus aureus during polymicrobial infection of Galleria mellonella larvae
Cited by: 20
Author(s): Gerard Sheehan, Laura Tully, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9040746

Investigation of the Initial Host Response of Naïve Atlantic Salmon (Salmo salar) Inoculated with Paramoeba perurans
Cited by: 1
Author(s): Michelle McCormack, Eugene Dillon, Ian O’Connor, Eugene MacCarthy
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8020295

Proteomic and Transcriptional Profiles of Human Stem Cell-Derived β Cells Following Enteroviral Challenge
Cited by: 6
Author(s): Julius O. Nyalwidhe, Agata Jurczyk, Basanthi Satish, Sambra D. Redick, Natasha Qaisar, Melanie I. Trombly, Pranitha Vangala, Riccardo Racicot, Rita Bortell, David M. Harlan, Dale L. Greiner, Michael A. Brehm, Jerry L. Nadler, Jennifer Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9040804

Early Post-Prandial Regulation of Protein Expression in the Midgut of Chagas Disease Vector Rhodnius prolixus Highlights New Potential Targets for Vector Control Strategy
Cited by: 7
Author(s): Radouane Ouali, Larissa Rezende Vieira, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9061144

Revisiting Ehrlichia ruminantium Replication Cycle Using Proteomics: The Host and the Bacterium Perspectives
Cited by: 2
Author(s): Isabel Marcelino, Philippe Holzmüller, Ana Varela Coelho, Gabriel Mazzucchelli, Bernard Fernandez, Nathalie Vachiéry
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9061258

Differential Exoproteome and Biochemical Characterisation of Neoparamoeba perurans
Cited by: 2
Author(s): Kerrie Ní Dhufaigh, Natasha A. Botwright, Eugene Dillon, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8121958

Echovirus-30 Infection Alters Host Proteins in Lipid Rafts at the Cerebrospinal Fluid Barrier In Vitro
Cited by: 1
Author(s): Marie Wiatr, Simon Staubach, Ricardo Figueiredo, Carolin Stump-Guthier, Hiroshi Ishikawa, Christian Schwerk, Horst Schroten, Franz‐Georg Hanisch, Henriette Rudolph, Tobias Tenenbaum
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms9050993

Host Response of Atlantic Salmon (Salmo salar) Re-Inoculated with Paramoeba perurans
Cited by: 1
Author(s): Michelle McCormack, Anita Talbot, Eugene Dillon, Ian O’Connor, Eugene MacCarthy
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8030413

Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37
Cited by: 9
Author(s): Pierre-Alexander Mücke, Sandra Maaß, Thomas P. Kohler, Sven Hammerschmidt, Dörte Becher
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms7120584

Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials
Cited by: 33
Author(s): Anna Hiltunen, Kirsi Savijoki, Tuula A. Nyman, Ilkka T. Miettinen, Petri Ihalainen, Jouko Peltonen, Adyary Fallarero
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13229-020-00366-x

Exosomes derived from mesenchymal stem cells improved core symptoms of genetically modified mouse model of autism Shank3B
Cited by: 23
Author(s): Nisim Perets, Oded Oron, Shay Herman, Evan Elliott, Daniel Offen
Software Mentions: 1
Published: about 6 years ago

10.1186/s13229-020-00385-8

Targeting of δ-catenin to postsynaptic sites through interaction with the Shank3 N-terminus
Cited by: 12
Author(s): Fatemeh Hassani Nia, Daniel Woike, Victoria Martens, Malte Klüssendorf, Hans-Hinrich Hönck, Sönke Harder, Hans‐Jürgen Kreienkamp
Software Mentions: 1
Published: almost 6 years ago

10.1093/molbev/msy160

Xenacoelomorph Neuropeptidomes Reveal a Major Expansion of Neuropeptide Systems during Early Bilaterian Evolution
Cited by: 27
Author(s): Daniel Thiel, Mirita Franz‐Wachtel, Felipe Aguilera, Andreas Hejnol
Software Mentions: 1
Published: about 8 years ago

10.1039/c6mb00290k

Mastitomics, the integrated omics of bovine milk in an experimental model of Streptococcus uberis mastitis: 2. Label-free relative quantitative proteomics
Cited by: 42
Author(s): Manikhandan Mudaliar, Riccardo Tassi, Funmilola Clara Thomas, Tom N. McNeilly, Stefan Weidt, Marκ McLaughlin, David Gordon Wilson, Richard Burchmore, Paweł Herzyk, P.D. Eckersall, Ruth N. Zadoks
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13041-021-00754-1

Enhanced contextual fear memory in peroxiredoxin 6 knockout mice is associated with hyperactivation of MAPK signaling pathway
Cited by: 10
Author(s): Sarayut Phasuk, Tanita Pairojana, Pavithra Suresh, Chee-Hing Yang, Sittiruk Roytrakul, Shangyu Huang, Chien‐Chang Chen, Narawut Pakaprot, Supin Chompoopong, Sutisa Nudmamud-Thanoi, Ingrid Y. Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13041-021-00783-w

FMRP attenuates activity dependent modifications in the mitochondrial proteome
Cited by: 7
Author(s): Pernille Bülow, Stephanie A. Zlatic, Peter Wenner, Gary J. Bassell, Víctor Faúndez
Software Mentions: 1
Published: over 5 years ago

10.1186/1476-4598-13-24

ADAM17 mediates OSCC development in an orthotopic murine model
Cited by: 15
Author(s): Fernando Moreira Simabuco, Rebeca Kawahara, Sami Yokoo, Daniela Campos Granato, Lucas Miguel, Michelle Agostini, Annelize Zambon Barbosa Aragão, Romênia R. Domingues, Isadora Luana Flores, Carolina Carneiro Soares Macedo, Ricardo D. Coletta, Edgard Graner, Adriana Franco Paes Leme
Software Mentions: 1
Published: over 12 years ago

10.1186/s12943-018-0905-y

Structure-based assessment and network analysis of targeting 14-3-3 proteins in prostate cancer
Cited by: 5
Author(s): Alex Root, Azadeh Beizaei, H. Alexander Ebhardt
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12943-014-0280-2

OTUB1 de-ubiquitinating enzyme promotes prostate cancer cell invasion in vitro and tumorigenesis in vivo
Cited by: 48
Author(s): Diego Iglesias-Gato, Yin-Choy Chuan, Ning Jiang, Craig K. Svensson, Jing Bao, Indranil Paul, Lars Egevad, Benedikt M. Kessler, Pernilla Wikström, Yuanjie Niu, Amílcar Flores-Morales
Software Mentions: 1
Published: almost 12 years ago

10.1016/j.molcel.2018.04.008

Polε Instability Drives Replication Stress, Abnormal Development, and Tumorigenesis
Cited by: 65
Author(s): Roberto Bellelli, Valérie Borel, Clare V. Logan, Jennifer M. Svendsen, Danielle E. Cox, Emma Nye, Kay Metcalfe, Susan O’Çonnell, Gordon Stamp, Helen Flynn, Ambrosius P. Snijders, François Lassailly, Andrew P. Jackson, Simon J. Boulton
Software Mentions: 1
Published: over 8 years ago

10.1016/j.molcel.2017.01.003

Serine ADP-Ribosylation Depends on HPF1
Cited by: 235
Author(s): Juán José Bonfiglio, Pietro Fontana, Qi Zhang, Thomas Colby, Ian Gibbs-Seymour, Ilian Atanassov, Edward Bartlett, Roko Žaja, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: over 9 years ago

10.1016/j.molcel.2020.05.035

DDI2 Is a Ubiquitin-Directed Endoprotease Responsible for Cleavage of Transcription Factor NRF1
Cited by: 37
Author(s): A. Barbara Dirac-Svejstrup, Jane Walker, Peter Faull, Vesela Encheva, Vyacheslav Akimov, Michele Puglia, David N. Perkins, Sandra Kümper, Suchete S. Hunjan, Blagoy Blagoev, Ambrosius P. Snijders, David J. Powell, Jesper Q. Svejstrup
Software Mentions: 1
Published: over 6 years ago

10.1007/s11010-019-03593-w

A key metabolic integrator, coenzyme A, modulates the activity of peroxiredoxin 5 via covalent modification
Cited by: 20
Author(s): Jovana Baković, Bess Yi Kun Yu, Daniel Silva, Sew Peak Chew, Sang Eun Kim, Seungjoon Ahn, Laura Palmer, Lujain Aloum, Giacomo Stanzani, О. М. Маланчук, Michael R. Duchen, Mervyn Singer, Valeriy Filonenko, Tae‐Hoon Lee, Mark Skehel, Ivan Gout
Software Mentions: 1
Published: about 7 years ago

10.1007/s11010-019-03559-y

Cytoplasmic SIRT1 inhibits cell migration and invasion by impeding epithelial–mesenchymal transition in ovarian carcinoma
Cited by: 16
Author(s): Tong Yang, Ru Zhou, Shentong Yu, Shu‐Hong Yu, Zhuqing Cui, Peizhen Hu, Jinsong Liu, Qing Qiao, Jing Zhang
Software Mentions: 1
Published: about 7 years ago

10.1128/MCB.00248-19

Omomyc Reveals New Mechanisms To Inhibit the MYC Oncogene
Cited by: 40
Author(s): Mark Demma, Claudio Mapelli, Angie Sun, Smaranda Bodea, Benjamin Ruprecht, Sarah Javaid, Derek Wiswell, Eric S. Muise, Shiying Chen, John Zelina, Federica Orvieto, Alessia Santoprete, Simona Altezza, Federica Tucci, Enrique Escandón, Brian E. Hall, Kallol Ray, Abbas M. Walji, Jennifer O’Neil
Software Mentions: 1
Published: almost 7 years ago

10.1128/MCB.00775-15

Sorbs1 and -2 Interact with CrkL and Are Required for Acetylcholine Receptor Cluster Formation
Cited by: 28
Author(s): Peter T. Hallock, Sherry Chin, Steven P. Blais, Thomas A. Neubert, David J. Glass
Software Mentions: 1
Published: almost 11 years ago

10.1074/mcp.RA120.002301

Interspecies Differences in Proteome Turnover Kinetics Are Correlated With Life Spans and Energetic Demands
Cited by: 33
Author(s): Kyle Swovick, Denis Firsanov, Kevin Welle, Jennifer R. Hryhorenko, John Pierce Wise, Craig George, Todd Sformo, Andrei Seluanov, Vera Gorbunova, Sina Ghaemmaghami
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.O116.065136

Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics
Cited by: 157
Author(s): Nils A. Kulak, Philipp Geyer, Matthias Mann
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.TIR118.000900

Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer
Cited by: 524
Author(s): Florian Meier, Andreas David Brunner, Scarlet Koch, Heiner Koch, Markus Lubeck, Michael Krause, Niels Goedecke, Jens Decker, Thomas Kosinski, Melvin A. Park, Nicolai Bache, Ole Hoerning, Jürgen Cox, Oliver Räther, Matthias Mann
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.RA120.002152

Novel Proteome Extraction Method Illustrates a Conserved Immunological Signature of MSI-H Colorectal Tumors
Cited by: 0
Author(s): E Vainer, Juliane Kania-Almog, Ghadeer Zatara, Yishai Levin, Gilad W. Vainer
Software Mentions: 1
Published: about 6 years ago

10.1074/mcp.M116.064261

Proteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses
Cited by: 25
Author(s): Marijke Koppenol-Raab, Virginie Sjoelund, Nathan P. Manes, Rachel A. Gottschalk, Bhaskar Dutta, Zachary Benet, Iain D. C. Fraser, Aleksandra Nita‐Lazar
Software Mentions: 1
Published: over 9 years ago

10.1016/j.mcpro.2021.100082

A New Parallel High-Pressure Packing System Enables Rapid Multiplexed Production of Capillary Columns
Cited by: 11
Author(s): Johannes B. Müller-Reif, Fynn M. Hansen, Lisa Schweizer, Peter V. Treit, Philipp Geyer, Matthias Mann
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA119.001546

The Secretome Profiling of a Pediatric Airway Epithelium Infected with hRSV Identified Aberrant Apical/Basolateral Trafficking and Novel Immune Modulating (CXCL6, CXCL16, CSF3) and Antiviral (CEACAM1) Proteins
Cited by: 15
Author(s): Olivier Touzelet, Lindsay Broadbent, Stuart D. Armstrong, Waleed Aljabr, Elaine Cloutman-Green, Ultan F. Power, Julian A. Hiscox
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.TIR119.001560

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples
Cited by: 66
Author(s): Samuel Weng, Fatih Demir, Enes K. Ergin, Sabrina Dirnberger, Anuli Uzozie, Domenic Tuscher, Lorenz Nierves, Janice Tsui, Pitter F. Huesgen, Philipp F. Lange
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: Andromeda

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Papers Mentioning Andromeda 1,724