cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1242/jcs.234401

Plk1-dependent cell cycle-independent furrowing triggered by phosphomimetic mutations of the INCENP STD motif
Cited by: 3
Author(s): Diana Papini, Xavier Fant, Hiromi Ogawa, Nathalie Desban, Kumiko Samejima, Omid Feizbakhsh, Bilge Askin, Tony Ly, William C. Earnshaw, Sandrine Ruchaud
Software Mentions: 1
Published: over 7 years ago

10.1242/jcs.241976

The mammalian cytosolic thioredoxin reductase pathway acts via a membrane protein to reduce ER-localised proteins
Cited by: 14
Author(s): Xiaofei Cao, Sérgio Lilla, Zhenbo Cao, Marie Anne Pringle, Ojore Oka, Philip J. Robinson, Tomasz Szmaja, Marcel van Lith, Sara Zanivan, Neil J. Bulleid
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.242271

Control of assembly of extra-axonemal structures: the paraflagellar rod of trypanosomes
Cited by: 14
Author(s): Aline A. Alves, Heloisa B. Gabriel, Maria J. R. Bezerra, Wanderley de Souza, Sue Vaughan, Narcisa L. Cunha-e-Silva, Jack D. Sunter
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.248591

Chromokinesin KIF4A teams up with stathmin 1 to regulate abscission in a SUMO-dependent manner
Cited by: 6
Author(s): Sabine A. G. Cuijpers, Edwin Willemstein, Jan Gustav Ruppert, Daphne M. van Elsland, William C. Earnshaw, Alfred C.O. Vertegaal
Software Mentions: 1
Published: about 6 years ago

10.1242/jcs.246025

The C-terminal helix of BubR1 is essential for CENP-E-dependent chromosome alignment
Cited by: 16
Author(s): Thibault Legal, Daniel Hayward, Agata Gluszek-Kustusz, Elizabeth A. Blackburn, Christos Spanos, Juri Rappsilber, Ulrike Grüneberg, Julie Welburn
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.254300

Characterization of the novel mitochondrial genome segregation factor TAP110 in Trypanosoma brucei
Cited by: 21
Author(s): Simona Amodeo, Ana Kalichava, Albert Fradera-Sola, Eloïse Bertiaux-Lequoy, Paul Guichard, Falk Butter, Torsten Ochsenreiter
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21144998

Proteomics Reveals that Methylmalonyl-CoA Mutase Modulates Cell Architecture and Increases Susceptibility to Stress
Cited by: 35
Author(s): Michele Costanzo, Marianna Caterino, Armando Cevenini, Vincent Jung, Cérina Chhuon, Joanna Lipecka, Roberta Fedele, Ida Chiara Guerrera, Margherita Ruoppolo
Software Mentions: 1
Published: about 6 years ago

10.3390/jcm9030820

Ponatinib Induces Vascular Toxicity through the Notch-1 Signaling Pathway
Cited by: 15
Author(s): Rosalinda Madonna, Damiana Pieragostino, Maria Concetta Cufaro, Vanessa Doria, Piero Del Boccio, Martino Deidda, Sante D. Pierdomenico, Christian Cadeddu Dessalvi, Raffaele De Caterina, Giuseppe Mercuro
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm9051573

Novel Insights into the Role of UBE3A in Regulating Apoptosis and Proliferation
Cited by: 10
Author(s): Lilach Simchi, Julia Panov, Olla Morsy, Yonatan Feuermann, Hanoch Kaphzan
Software Mentions: 1
Published: about 6 years ago

10.3390/jcm9113778

AL Amyloidosis: The Effect of Maintenance Therapy on Autologous Stem Cell Transplantation Outcomes
Cited by: 6
Author(s): Michael Ozga, Qiuhong Zhao, Don M. Benson, Patrick Elder, Nita Williams, Naresh Bumma, Ashley Rosko, Maria Chaudhry, Abdullah Khan, Srinivas Devarakonda, Rami Kahwash, Ajay Vallakati, Courtney Campbell, Samir Parikh, Salem Almaani, Jason Prosek, Jordan Bittengle, Katherine Pfund, Samantha LoRusso, Miriam Freimer, Elyse Redder, Yvonne A. Efebera, Nidhi Sharma
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/erw147

Quantitative proteomics reveals the importance of nitrogen source to control glucosinolate metabolism inArabidopsis thalianaandBrassica oleracea
Cited by: 49
Author(s): Daniel Marino, Idoia Ariz, Berta Lasa, Enrique Santamaría, Joaquín Fernández‐Irigoyen, Carmen González‐Murua, Pedro María Aparicio Tejo
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erx183

Affinity purification with metabolomic and proteomic analysis unravels diverse roles of nucleoside diphosphate kinases
Cited by: 29
Author(s): Marcin Luzarowski, Monika Kosmacz, Ewelina Sokołowska, Weronika Jasińska, Lothar Willmitzer, Daniel Veyel
Software Mentions: 1
Published: about 9 years ago

10.1093/jxb/erz021

Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis
Cited by: 10
Author(s): Sacha Escamez, Simon Stael, Julia P. Vainonen, Patrick J. Willems, Huiting Jin, Shigenobu Kimura, Frank Van Breusegem, Kris Gevaert, Michael Wrzaczek, Hannele Tuominen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1003663

Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA
Cited by: 171
Author(s): Matthias Habjan, Philipp Hubel, Lívia C. T. Lacerda, Christian Benda, Cathleen Holze, H. Christian Eberl, Angelika Mann, Eveline Kindler, Cristina Gil‐Cruz, John Ziebuhr, Volker Thiel, Andreas Pichlmair
Software Mentions: 1
Published: almost 13 years ago

10.15698/mic2017.10.593

Identification of SUMO conjugation sites in the budding yeast proteome
Cited by: 16
Author(s): Miguel Esteras, I-Chun Liu, Ambrosius P. Snijders, Adam Jarmuz, Luís Aragón
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms21155234

(Phospho)proteomic Profiling of Microsatellite Unstable CRC Cells Reveals Alterations in Nuclear Signaling and Cholesterol Metabolism Caused by Frameshift Mutation of NMD Regulator UPF3A
Cited by: 4
Author(s): Malwina Michalak, Eva-Maria Katzenmaier, Nina Roeckel, Stefan M. Woerner, Vera Fuchs, Uwe Warnken, Yan P. Yuan, Peer Bork, Gabriele Neu‐Yilik, Andreas E. Kulozik, Magnus von Knebel Doeberitz, Matthias Kloor, Jürgen Kopitz, Johannes Gebert
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21165841

Evidence for Enhanced Exosome Production in Aromatase Inhibitor-Resistant Breast Cancer Cells
Cited by: 21
Author(s): Giuseppina Augimeri, Giusi La Camera, Luca Gelsomino, Cinzia Giordano, Salvatore Panza, Diego Sisci, Catia Morelli, Balázs Győrffy, Daniela Bonofiglio, Sebastiano Andò, Ines Barone, Stefania Catalano
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1004924

Evidence for a Novel Mechanism of Influenza Virus-Induced Type I Interferon Expression by a Defective RNA-Encoded Protein
Cited by: 25
Author(s): Yvonne Boergeling, Timofey S. Rozhdestvensky, Mirco Schmolke, Patricia Resa-Infante, Thomas Robeck, Gerrit Randau, Thorsten Wolff, Gülşah Gabriel, Jürgen Brosius, Stephan Ludwig
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005439

Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei
Cited by: 82
Author(s): Mario Dejung, Ines Subota, Ferdinand Bucerius, G. Dindar, Anja Freiwald, Markus Engstler, Michael Boshart, Falk Butter, Christian J. Janzen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005971

Activation of Bicyclic Nitro-drugs by a Novel Nitroreductase (NTR2) in Leishmania
Cited by: 64
Author(s): Susan Wyllie, Adam J. Roberts, Suzanne Norval, Stephen Patterson, Bernardo J. Foth, Matthew Berriman, Kevin D. Read, Alan H. Fairlamb
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1006071

Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus
Cited by: 64
Author(s): Tobias Dietsche, Mehari Tesfazgi Mebrhatu, Matthias Brünner, Patrizia Abrusci, Jun Yan, Mirita Franz‐Wachtel, Charlotta Schärfe, Susann Zilkenat, Iwan Grin, Jorge E. Galán, Oliver Kohlbacher, Susan M. Lea, Boris Maček, Thomas C. Marlovits, Carol V. Robinson, Samuel Wagner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006550

A trypanosomal orthologue of an intermembrane space chaperone has a non-canonical function in biogenesis of the single mitochondrial inner membrane protein translocase
Cited by: 21
Author(s): Christoph Wenger, Silke Oeljeklaus, Bettina Warscheid, André Schneider, Anke Harsman
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006635

Influenza virus differentially activates mTORC1 and mTORC2 signaling to maximize late stage replication
Cited by: 72
Author(s): Sharon K. Kuss-Duerkop, Juan Wang, Ignacio Mena, Kris M. White, Giorgi Metreveli, Ramanavelan Sakthivel, Miguel A. Mata, Raquel Muñoz-Moreno, Xiang Chen, Florian Krammer, Michael S. Diamond, Zhijian J. Chen, Adolfo Garcı́a-Sastre, Beatriz M. A. Fontoura
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006697

Regulation of NF-κB by the p105-ABIN2-TPL2 complex and RelAp43 during rabies virus infection
Cited by: 27
Author(s): Benoît Besson, Florian Sonthonnax, Magalie Duchateau, Youcef Ben Khalifa, Florence Larrous, Hyeju Eun, Véronique Hourdel, Mariette Matondo, Julia Chamot‐Rooke, Régis Grailhe, Hervé Bourhy
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.yjsbx.2018.100002

3D mapping of native extracellular matrix reveals cellular responses to the microenvironment
Cited by: 13
Author(s): Zipora Lansky, Yael Mutsafi, Lothar Houben, Tal Ilani, Gad Armony, Sharon G. Wolf, Deborah Fass
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1007111

Hepatitis C virus enters liver cells using the CD81 receptor complex proteins calpain-5 and CBLB
Cited by: 41
Author(s): Janina Bruening, Lisa Laßwitz, Pia Banse, Sina Kahl, Carine Marinach, Florian W. R. Vondran, Lars Kaderali, Olivier Silvie, Thomas Pietschmann, Felix Meissner, Gisa Gerold
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007736

A novel interaction between dengue virus nonstructural protein 1 and the NS4A-2K-4B precursor is required for viral RNA replication but not for formation of the membranous replication organelle
Cited by: 61
Author(s): Anna Płaszczyca, Pietro Scaturro, Christopher J. Neufeldt, Mirko Cortese, Berati Cerikan, Salvatore Ferla, Andrea Brancale, Andreas Pichlmair, Ralf Bartenschlager
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1007809

Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites
Cited by: 26
Author(s): Ellen Knuepfer, Katherine E. Wright, Surendra Kumar Prajapati, Thomas A. Rawlinson, Franziska Mohring, Marion Koch, Oliver Lyth, Steven Howell, Elizabeth Villasis, Ambrosius P. Snijders, Robert W. Moon, Simon J. Draper, Anna Rosanas-Urgell, Matthew K. Higgins, Jake Baum, Anthony A. Holder
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.ppat.1007973

Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission
Cited by: 17
Author(s): Thomas Hollin, Caroline De Witte, Aline Fréville, Ida Chiara Guerrera, Cérina Chhuon, Jean‐Michel Saliou, Fabien Herbert, Christine Pierrot, Jamal Khalife
Software Mentions: 1
Published: about 7 years ago

10.1111/1751-7915.13476

Development of omics‐based protocols for the microbiological characterization of multi‐strain formulations marketed as probiotics: the case of VSL#3
Cited by: 27
Author(s): Diego Mora, Rossella Filardi, Stefania Arioli, Sjef Boeren, Steven Aalvink, Willem M. de Vos
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21186625

Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease
Cited by: 5
Author(s): Sébastien A. Gauthier, Iwona Pranke, Vincent Jung, Loredana Martignetti, Véronique Stoven, Thao Nguyen‐Khoa, Michaela Semeraro, Alexandre Hinzpeter, Aleksander Edelman, Chiara Guerrera, Isabelle Sermet‐Gaudelus
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.mex.2018.05.013

Gel-free sample preparation techniques and bioinformatic enrichment analysis to in depth characterise the cell wall proteome of mycobacteria
Cited by: 3
Author(s): Clemens Hermann, Alexander D. Giddey, Andrew J. M. Nel, Nelson C. Soares, Jonathan M. Blackburn
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1008640

Ubiquitin activation is essential for schizont maturation in Plasmodium falciparum blood-stage development
Cited by: 19
Author(s): Judith L. Green, Yang Wu, Vesela Encheva, Edwin Lasonder, Adchara Prommaban, Simone Kunzelmann, Evangelos Christodoulou, Munira Grainger, Ngoc Truongvan, Sebastian Bothe, Vikram Sharma, Wei Song, Irene Pinzuti, Chairat Uthaipibull, Somdet Srichairatanakool, Véronique Birault, Gordon Langsley, Hermann Schindelin, Benjamin Stieglitz, Ambrosius P. Snijders, Anthony A. Holder
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008775

Discrete spatio-temporal regulation of tyrosine phosphorylation directs influenza A virus M1 protein towards its function in virion assembly
Cited by: 4
Author(s): Angeles Mecate-Zambrano, Swathi Sukumar, Guiscard Seebohm, Kevin Ciminski, André Schreiber, Darisuren Anhlan, Lilo Greune, Ludmilla Wixler, S. Grothe, Nora C. Stein, M. Alexander Schmidt, Klaus Langer, Martin Schwemmle, Ting Shi, Stephan Ludwig, Yvonne Boergeling
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21186601

Proteomic Approach for Searching for Universal, Tissue-Specific, and Line-Specific Markers of Extracellular Vesicles in Lung and Colorectal Adenocarcinoma Cell Lines
Cited by: 8
Author(s): Svetlana E. Novikova, N. A. Shushkova, T. E. Farafonova, Olga V. Tikhonova, Roman Kamyshinsky, Victor G. Zgoda
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21197330

Label-Free Mass Spectrometry-Based Quantification of Linker Histone H1 Variants in Clinical Samples
Cited by: 7
Author(s): Roberta Noberini, Cristina Morales Torres, Evelyn Oliva Savoia, Stefania Brandini, Maria Giovanna Jodice, Giovanni Bertalot, Giuseppina Bonizzi, Maria Capra, Giuseppe R. Diaferia, Paola Scaffidi, Tiziana Bonaldi
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008855

SAMHD1 phosphorylation and cytoplasmic relocalization after human cytomegalovirus infection limits its antiviral activity
Cited by: 12
Author(s): Simone De Meo, Valentina Dell’Oste, Rosa Molfetta, Valentina Tassinari, Lavinia Vittoria Lotti, Simone Vespa, Benedetta Pignoloni, Daniela Angela Covino, Laura Fantuzzi, Roberta Bona, Alessandra Zingoni, Ilaria Nardone, Matteo Biolatti, Alessandra Coscia, Rossella Paolini, Monsef Benkirane, Fredrik Edfors, Tatyana Sandalova, Adnane Achour, John Hiscott, Santo Landolfo, Angela Santoni, Cristina Cerboni
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1009134

The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cells
Cited by: 4
Author(s): Samuel Stokes, Floriane Almire, Michael H. Tatham, Steven McFarlane, Peter Mertens, Emilie Pondeville, Chris Boutell
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo10040146

Acetylation of Phenylalanine Hydroxylase and Tryptophan 2,3-Dioxygenase Alters Hepatic Aromatic Amino Acid Metabolism in Weaned Piglets
Cited by: 0
Author(s): Lu Huang, Weilei Yao, Tongxin Wang, Juan Li, Qiongyu He, Feiruo Huang
Software Mentions: 1
Published: over 6 years ago

10.1007/s00253-020-10654-4

Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria
Cited by: 4
Author(s): Lasse van Geelen, Farnusch Kaschani, Shabnam Shaneh Sazzadeh, Emmanuel T Adeniyi, Dieter Meier, Peter Proksch, Klaus Pfeffer, Markus Kaiser, Thomas R. Ioerger, Rainer Kalscheuer
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21207769

A Screen for PKN3 Substrates Reveals an Activating Phosphorylation of ARHGAP18
Cited by: 2
Author(s): Michal Dibus, Jan Brábek, Daniel Rösel
Software Mentions: 1
Published: almost 6 years ago

10.3390/membranes11030199

Trastuzumab Modulates the Protein Cargo of Extracellular Vesicles Released by ERBB2+ Breast Cancer Cells
Cited by: 5
Author(s): Silvia Marconi, Sara Santamaria, Martina Bartolucci, Sara Stigliani, Cinzia Aiello, Maria Cristina Gagliani, Grazia Bellese, Andrea Petretto, Katia Cortese, Patrizio Castagnola
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.1910262116

Corazonin signaling integrates energy homeostasis and lunar phase to regulate aspects of growth and sexual maturation in Platynereis
Cited by: 44
Author(s): Gabriele Andreatta, Caroline Broyart, Charline Borghgraef, Karim Vadiwala, V. V. Kozin, Alessandra Polo, Andrea Bileck, Isabel Beets, Liliane Schoofs, Christopher Gerner, Florian Raible
Software Mentions: 1
Published: over 6 years ago

10.1073/pnas.1905641117

Direct visualization of degradation microcompartments at the ER membrane
Cited by: 62
Author(s): Sahradha Albert, Wojciech Wietrzyñski, Chia-Wei Lee, Miroslava Schaffer, Florian Beck, Jan M. Schuller, Patrice A. Salomé, Jürgen M. Plitzko, Wolfgang Baumeister, Benjamin D. Engel
Software Mentions: 1
Published: over 6 years ago

10.1002/term.3081

Proteomic profiling of striatal tissue of a rat model of Parkinson's disease after implantation of collagen‐encapsulated human umbilical cord mesenchymal stem cells
Cited by: 2
Author(s): Anna Santaella, Hans Wessels, Purva Kulkarni, Jolein Gloerich, H. Bea Kuiperij, Bastiaan R. Bloem, Alain J. van Gool, Sílvia Cabré, Verónica Alamilla, Marcel M. Verbeek
Software Mentions: 1
Published: about 6 years ago

10.1186/1477-5956-10-28

In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea
Cited by: 75
Author(s): Karlheinz Mann, Eric Edsinger, Matthias Mann
Software Mentions: 1
Published: over 14 years ago

10.1186/1477-5956-11-40

The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell
Cited by: 41
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: over 13 years ago

10.1186/1477-5956-11-43

Quantitative proteomics reveals regulatory differences in the chondrocyte secretome from human medial and lateral femoral condyles in osteoarthritic patients
Cited by: 35
Author(s): Johan Stenberg, Ulla Rüetschi, Eva Skiöldebrand, Johan Kärrholm, Anders Lindahl
Software Mentions: 1
Published: almost 13 years ago

10.1186/1477-5956-12-41

Probing SH2-domains using Inhibitor Affinity Purification (IAP)
Cited by: 10
Author(s): Michael Höfener, Stephanie Heinzlmeir, Bernhard Küster, Norbert Sewald
Software Mentions: 1
Published: about 12 years ago

10.1186/s12953-015-0078-1

Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes
Cited by: 27
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12953-015-0086-1

The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)
Cited by: 29
Author(s): Karlheinz Mann
Software Mentions: 1
Published: over 10 years ago

10.3390/md18070362

Shotgun Proteomics of Ascidians Tunic Gives New Insights on Host–Microbe Interactions by Revealing Diverse Antimicrobial Peptides
Cited by: 8
Author(s): Ana Lemos de Matos, Dany Domínguez-Pérez, Daniela Almeida, Guillermı́n Agüero-Chapin, Alexandre Campos, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 1
Published: about 6 years ago

10.1186/s12953-016-0110-0

An interactomics overview of the human and bovine milk proteome over lactation
Cited by: 33
Author(s): Lina Zhang, Aalt D. J. van Dijk, Kasper Hettinga
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms21218121

A Global Proteomic Approach Sheds New Light on Potential Iron-Sulfur Client Proteins of the Chloroplastic Maturation Factor NFU3
Cited by: 4
Author(s): Nathalie Berger, Florence Vignols, Brigitte Touraine, Maël Taupin-Broggini, Valérie Rofidal, Vincent Demolombe, Véronique Santoni, Nicolas Rouhier, Frédéric Gaymard, Christian Dubos
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12953-020-00165-5

Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation
Cited by: 5
Author(s): Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa HaileMariam, Shiferaw Bekele, Mesfin Tamirat, Aboma Zewude, Temesgen Mohamed, Girmay Medhin, Mengistu Legesse, Yu Yoshida, Gobena Ameni, Rembert Pieper
Software Mentions: 1
Published: almost 6 years ago

10.3390/proteomes4020016

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer
Cited by: 5
Author(s): Jae-Young Kim, Paul A. Stewart, Adam L. Borne, Bin Fang, Eric A. Welsh, Yian Ann Chen, Steven Eschrich, John M. Koomen, Eric B. Haura
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes4010010

Comparing Simplification Strategies for the Skeletal Muscle Proteome
Cited by: 2
Author(s): Bethany Geary, Iain S. Young, Phillip Cash, Phillip D. Whitfield, Mary K. Doherty
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes6020019

A Proteomic View of Salmonella Typhimurium in Response to Phosphate Limitation
Cited by: 8
Author(s): Jiezhang Jiang, Kaiwen Yu, Linlu Qi, Yanhua Liu, Sen Cheng, Mei Wu, Zhen Wang, Jiaqi Fu, Xiaoyun Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/proteomes8020006

Vesiculation of Red Blood Cells in the Blood Bank: A Multi-Omics Approach towards Identification of Causes and Consequences
Cited by: 11
Author(s): Joames Kauffimann Freitas Leal, Edwin Lasonder, Vikram Sharma, Jürgen Schiller, Guido Fanelli, Sara Rinalducci, Roland Brock, G.J.C.G.M. Bosman
Software Mentions: 1
Published: over 6 years ago

10.1128/AEM.02808-19

Identification of Genes Required for Glucan Exopolysaccharide Production in Lactobacillus johnsonii Suggests a Novel Biosynthesis Mechanism
Cited by: 12
Author(s): Melinda J. Mayer, Alfonsina D’Amato, Ian J. Colquhoun, Gwénaëlle Le Gall, Arjan Narbad
Software Mentions: 1
Published: over 6 years ago

10.3390/md19080420

Large-Scale Plasma Peptidomic Profiling Reveals a Novel, Nontoxic, Crassostrea hongkongensis-Derived Antimicrobial Peptide against Foodborne Pathogens
Cited by: 7
Author(s): Fan Mao, Yongbo Bao, Nai-Kei Wong, Minwei Huang, Kunna Liu, Xiangyu Zhang, Zhuo Yang, Wenjie Yi, Xiao Ou Shu, Zhiming Xiang, Yu Zhou, Yang Zhang
Software Mentions: 1
Published: about 5 years ago

10.3390/proteomes8030016

High-Throughput Identification of the Rhodnius prolixus Midgut Proteome Unravels a Sophisticated Hematophagic Machinery
Cited by: 10
Author(s): Radouane Ouali, Karen Caroline Valentim de Brito, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: about 6 years ago

10.3390/proteomes9020019

Combining Mass Spectrometry-Based Phosphoproteomics with a Network-Based Approach to Reveal FLT3-Dependent Mechanisms of Chemoresistance
Cited by: 4
Author(s): Giusj Monia Pugliese, Sara Latini, Giorgia Massacci, Livia Perfetto, Francesca Sacco
Software Mentions: 1
Published: over 5 years ago

10.1186/s12944-020-01350-3

Effect of niacin monotherapy on high density lipoprotein composition and function
Cited by: 7
Author(s): Scott M. Gordon, Marcelo Amar, Kianoush Jeiran, Michael Stagliano, Emma Staller, Martin P. Playford, Nehal N. Mehta, Tomáš Vaisar, Alan T. Remaley
Software Mentions: 1
Published: almost 6 years ago

10.3390/proteomes9030037

Insulin and 5-Aminoimidazole-4-Carboxamide Ribonucleotide (AICAR) Differentially Regulate the Skeletal Muscle Cell Secretome
Cited by: 4
Author(s): Alba González-Franquesa, Lone Peijs, Daniel T. Cervone, Ceren Koçana, Juleen R. Zierath, Atul S. Deshmukh
Software Mentions: 1
Published: about 5 years ago

10.1002/pmic.201500400

Group 1 metabotropic glutamate receptors 1 and 5 form a protein complex in mouse hippocampus and cortex
Cited by: 50
Author(s): Nikhil J. Pandya, Remco V. Klaassen, Roel C. van der Schors, Johan A. Slotman, Adriaan B. Houtsmuller, August B. Smit, Ka Wan Li
Software Mentions: 1
Published: almost 10 years ago

10.1002/pmic.201600213

Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation
Cited by: 4
Author(s): René B. H. Braakman, Christoph Stingl, Madeleine M.A. Tilanus-Linthorst, Carolien H.M. van Deurzen, Mieke Timmermans, Marcel Smid, John A. Foekens, Theo M. Luider, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 9 years ago

10.26508/lsa.201800070

Proteomics and C9orf72 neuropathology identify ribosomes as poly-GR/PR interactors driving toxicity
Cited by: 81
Author(s): Hannelore Hartmann, Daniel Hornburg, Mareike Czuppa, Jakob Bader, Meike Michaelsen, Daniel Farny, Thomas Arzberger, Matthias Mann, Felix Meissner, Dieter Edbauer
Software Mentions: 1
Published: over 8 years ago

10.3390/nu12020425

Whey Peptides Stimulate Differentiation and Lipid Metabolism in Adipocytes and Ameliorate Lipotoxicity-Induced Insulin Resistance in Muscle Cells
Cited by: 20
Author(s): Kenneth D’Souza, Angella Mercer, Hannah Mawhinney, Thomas Pulinilkunnil, Chibuike C. Udenigwe, Petra C. Kienesberger
Software Mentions: 1
Published: over 6 years ago

10.26508/lsa.201800219

Mitochondrial stress response triggered by defects in protein synthesis quality control
Cited by: 22
Author(s): Uwe Richter, Kah Ying Ng, Fumi Suomi, Paula Marttinen, Tiina Turunen, Christopher B. Jackson, Anu Suomalainen, Helena Vihinen, Eija Jokitalo, Tuula A. Nyman, Marita A. Isokallio, James B. Stewart, Cecilia Mancini, Alfredo Brusco, Sara Seneca, Anne Lombès, Robert W. Taylor, Brendan J. Battersby
Software Mentions: 1
Published: over 7 years ago

10.26508/lsa.202000847

Peptide-based quorum sensing systems in Paenibacillus polymyxa
Cited by: 11
Author(s): Maya Voichek, Sandra Maaß, Tobias Kroniger, Dörte Becher, Rotem Sorek
Software Mentions: 1
Published: about 6 years ago

10.1002/pmic.201400527

Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network inSaccharomyces cerevisiae
Cited by: 13
Author(s): Andrew F. Jarnuczak, Patrick A. Eyers, Jean-Marc Schwartz, Chris M. Grant, Simon J. Hubbard
Software Mentions: 1
Published: over 11 years ago

10.1002/pmic.201500503

Absolute protein quantification of the yeast chaperome under conditions of heat shock
Cited by: 17
Author(s): R. Mackenzie, Craig Lawless, Stephen W. Holman, Karin Lanthaler, Robert J. Beynon, Chris M. Grant, Simon J. Hubbard, Patrick A. Eyers
Software Mentions: 1
Published: about 10 years ago

10.1002/prca.201900029

Moonlighting Proteins and Cardiopathy in the Spatial Response of MCF‐7 Breast Cancer Cells to Tamoxifen
Cited by: 2
Author(s): Abdulrab Ahmed M. Alkhanjaf, Roberto Raggiaschi, Mark Crawford, Gabriella Pinto, Jasminka Godovac‐Zimmermann
Software Mentions: 1
Published: about 7 years ago

10.26508/lsa.201900422

Pseudomonas aeruginosalectin LecB impairs keratinocyte fitness by abrogating growth factor signalling
Cited by: 11
Author(s): Alessia Landi, Muriel Mari, Svenja Kleiser, Tobias Wolf, Christine Gretzmeier, Isabel Wilhelm, Dimitra Kiritsi, Roland Thünauer, Roger Geiger, Alexander Nyström, Fulvio Reggiori, Julie Claudinon, Winfried Römer
Software Mentions: 1
Published: almost 7 years ago

10.1098/rsos.161004

Proteomic profiling of archaeological human bone
Cited by: 70
Author(s): Rikai Sawafuji, Enrico Cappellini, Tomohito Nagaoka, Anna K. Fotakis, Rosa Rakownikow Jersie-Christensen, Jesper V. Olsen, Kazuaki Hirata, Shintaroh Ueda
Software Mentions: 1
Published: about 9 years ago

10.1016/j.redox.2018.11.015

Citrate reduced oxidative damage in stem cells by regulating cellular redox signaling pathways and represent a potential treatment for oxidative stress-induced diseases
Cited by: 22
Author(s): Xiaopei Wu, Hanren Dai, Langlang Liu, Chao Xu, Yi Yin, Jing Yi, Monika Bielec, Yingchao Han, Shipu Li
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2018.101087

Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction
Cited by: 26
Author(s): Kaibo Xie, Christina Bunse, Katrin Marcus, Lars I. Leichert
Software Mentions: 1
Published: over 7 years ago

10.1021/acsomega.0c05997

Influence of Post-Translational Modifications on Protein Identification in Database Searches
Cited by: 4
Author(s): Fanni Bugyi, Dániel Szabó, Győző Szabó, Ágnes Révész, Veronika F.S. Pape, Eszter Soltész‐Katona, Eszter Tóth, Orsolya Kovács, Tamás Langó, Károly Vékey, László Drahos
Software Mentions: 1
Published: over 5 years ago

10.1016/j.redox.2019.101318

Covalent Aurora A regulation by the metabolic integrator coenzyme A
Cited by: 39
Author(s): Yugo Tsuchiya, Dominic P. Byrne, Selena G. Burgess, Jens Bormann, Jovana Baković, Yueyang Huang, Alexander Zhyvoloup, Bess Yi Kun Yu, Sew Y. Peak‐Chew, Trang Tran, Fiona Bellany, Alethea B. Tabor, Aw Edith Chan, Lalitha Guruprasad, O. M. Garifulin, Valeriy Filonenko, Matthias Vonderach, Samantha Ferries, Patrick A. Eyers, John Carroll, Mark Skehel, Richard Bayliss, Patrick A. Eyers, Ivan Gout
Software Mentions: 1
Published: over 6 years ago

10.3390/life11070683

Proteomic Analysis Unveils Expressional Changes in Cytoskeleton- and Synaptic Plasticity-Associated Proteins in Rat Brain Six Months after Withdrawal from Morphine
Cited by: 12
Author(s): Zdeňka Drastichová, Lucie Hejnová, Radka Moravcová, Jiřı́ Novotný
Software Mentions: 1
Published: about 5 years ago

10.1016/j.redox.2020.101597

Bioenergetic shift and actin cytoskeleton remodelling as acute vascular adaptive mechanisms to angiotensin II in murine retina and ophthalmic artery
Cited by: 15
Author(s): Natarajan Perumal, Lars Straßburger, David P. Herzog, Marianne B. Müller, Norbert Pfeiffer, Franz H. Grus, Caroline Manicam
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-016-0362-3

Identification of vitamin D sensitive pathways during lung development
Cited by: 36
Author(s): Ling Chen, Richard Wilson, Ellen Bennett, Graeme R. Zosky
Software Mentions: 1
Published: over 10 years ago

10.1016/j.xpro.2020.100022

Assessing Budding Yeast Phosphoproteome Dynamics in a Time-Resolved Manner using TMT10plex Mass Tag Labeling
Cited by: 6
Author(s): Andrew W. Jones, Helen Flynn, Frank Uhlmann, Ambrosius P. Snijders, Sandra A. Touati
Software Mentions: 1
Published: about 6 years ago

10.1590/1678-9199-JVATITD-2020-0053

Oxidative stress and antioxidant defense in detoxification systems of snake venom-induced toxicity
Cited by: 5
Author(s): Degang Dong, Zhongping Deng, Zhangren Yan, Wenli Mao, Jae-Seon Yi, Mei Song, Qiang Li, Jun Chen, Qi Chen, Liang Liu, Xi Wang, Xiuqin Huang, Wanchun Wang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.xpro.2021.100462

Purification and quantitative proteomic analysis of cell bodies and protrusions
Cited by: 0
Author(s): Maria Dermit, Faraz K. Mardakheh
Software Mentions: 1
Published: about 5 years ago

10.1016/j.xpro.2021.100682

A protocol for analyzing the protein terminome of human cancer cell line culture supernatants
Cited by: 2
Author(s): Kazuya Tsumagari, Chih‐Hsiang Chang, Yasushi Ishihama
Software Mentions: 1
Published: almost 5 years ago

10.1126/sciadv.1701016

Ligand binding to a G protein–coupled receptor captured in a mass spectrometer
Cited by: 47
Author(s): Hsin‐Yung Yen, Jonathan T. S. Hopper, Idlir Liko, Timothy M. Allison, Yun Zhu, Dejian Wang, Monika Stegmann, Shabaz Mohammed, Beili Wu, Carol V. Robinson
Software Mentions: 1
Published: about 9 years ago

10.1126/sciadv.aay6804

A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules
Cited by: 35
Author(s): Pilar Gutiérrez-Escribano, Matthew D. Newton, Aida Llauró, Jonas Huber, Loredana Tanasie, Joseph Davy, Isabel Aly, Ricardo Aramayo, Alex Montoya, Holger Kramer, Johannes Stigler, David Rueda, Luís Aragón
Software Mentions: 1
Published: almost 7 years ago

10.3390/life4010035

Setting the Stage for Habitable Planets
Cited by: 3
Author(s): Guillermo González
Software Mentions: 1
Published: over 12 years ago

10.1038/sdata.2015.47

The proteome of mouse vestibular hair bundles over development
Cited by: 34
Author(s): Jocelyn F. Krey, Nicholas E. Sherman, Erin Jeffery, Dongseok Choi, Peter G. Barr-Gillespie
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms22010462

The Thyroid Hormone Transporter Mct8 Restricts Cathepsin-Mediated Thyroglobulin Processing in Male Mice through Thyroid Auto-Regulatory Mechanisms That Encompass Autophagy
Cited by: 5
Author(s): Vaishnavi Venugopalan, Alaa Al-Hashimi, Maren Rehders, Janine Golchert, Vivien Reinecke, Georg Homuth, Uwe Völker, Mythili Manirajah, Alae Touzani, Jonas Weber, Matthew Bogyo, François Verrey, Eva K. Wirth, Ulrich Schweizer, Heike Heuer, Janine Kirstein, Klaudia Brix
Software Mentions: 1
Published: over 5 years ago

10.1038/sdata.2018.31

Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells
Cited by: 22
Author(s): Giorgio Giurato, Giovanni Nassa, Annamaria Salvati, Elena Alexandrova, Francesca Rizzo, Tuula A. Nyman, Alessandro Weisz, Roberta Tarallo
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2018.128

Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells
Cited by: 16
Author(s): Jocelyn F. Krey, Déborah I. Scheffer, Dongseok Choi, Ashok P. Reddy, Larry L. David, David P. Corey, Peter G. Barr-Gillespie
Software Mentions: 1
Published: about 8 years ago

10.1038/leu.2013.361

Differential expression of miR-17∼92 identifies BCL2 as a therapeutic target in BCR-ABL-positive B-lineage acute lymphoblastic leukemia
Cited by: 51
Author(s): Michaela Scherr, Alex Elder, Karin Battmer, David Barzan, Simon Bomken, Melanie Ricke‐Hoch, Arne Schröder, Letizia Venturini, Helen J. Blair, Josef Vormoor, Oliver G. Ottmann, Arnold Ganser, Andreas Pich, Denise Hilfiker‐Kleiner, Olaf Heidenreich, Matthias Eder
Software Mentions: 1
Published: over 12 years ago

10.1038/s41597-019-0166-7

A dataset describing a suite of novel antibody reagents for the RAS signaling network
Cited by: 4
Author(s): Regine M. Schoenherr, Dongqing Huang, Uliana J. Voytovich, Richard G. Ivey, Jacob J. Kennedy, Richard G. Saul, Simona Colantonio, Rhonda R. Roberts, Joseph G. Knotts, Jan Kaczmarczyk, Candice Perry, Stephen M. Hewitt, William Bocik, Gordon Whiteley, Tara Hiltke, Emily S. Boja, Henry Rodriguez, Jeffrey R. Whiteaker, Amanda G. Paulovich
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41597-019-0179-2

The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei
Cited by: 13
Author(s): Giovanni Nassa, Giorgio Giurato, Annamaria Salvati, Valerio Gigantino, Giovanni Pecoraro, Jessica Lamberti, Francesca Rizzo, Tuula A. Nyman, Roberta Tarallo, Alessandro Weisz
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40170-020-00228-3

The conversion of formate into purines stimulates mTORC1 leading to CAD-dependent activation of pyrimidine synthesis
Cited by: 5
Author(s): Jacqueline Tait-Mulder, Kelly Hodge, David Sumpton, Sara Zanivan, Alexei Vazquez
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41597-020-00678-w

Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis
Cited by: 18
Author(s): Julia Mergner, Martin Frejno, Maxim Messerer, Daniel Lang, Patroklos Samaras, Mathias Wilhelm, Klaus Mayer, Claus Schwechheimer, Bernhard Küster
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41597-021-00884-0

Triple SILAC identified progestin-independent and dependent PRA and PRB interacting partners in breast cancer
Cited by: 3
Author(s): Prangwan Pateetin, György Hutvágner, Sarah Bajan, Matthew P. Padula, Eileen McGowan, Viroj Boonyaratanakornkit
Software Mentions: 1
Published: over 5 years ago

Projects: cran: Andromeda

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