cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3389/fphar.2021.650216

Antimetastatic Effects of Ganoderma lucidum Polysaccharide Peptide on B16-F10-luc-G5 Melanoma Mice With Sleep Fragmentation
Cited by: 14
Author(s): Haocheng Xian, Jiayi Li, Yimeng Zhang, Ditian Li, Yinan Zhu, Siyan Li, Zhelun Tan, Zhibin Lin, Xuejun Li, Yan Pan
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2020.594087

Molecular Biomarkers of Neovascular Age-Related Macular Degeneration With Incomplete Response to Anti-Vascular Endothelial Growth Factor Treatment
Cited by: 8
Author(s): Irmela Mantel, Angelica Borgo, Jacopo Guidotti, Edwige Forestier, Olga Kirsch, Yasmine Derradji, Patrice Waridel, Frédéric Burdet, Florence Mehl, Claude Schweizer, Raphaël Roduit
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2017.00748

The Human Amnion Epithelial Cell Secretome Decreases Hepatic Fibrosis in Mice with Chronic Liver Fibrosis
Cited by: 56
Author(s): Majid Alhomrani, Jeanne Correia, Marcus James Zavou, Bryan Leaw, Nathan Kuk, Rong Xu, Mohamed I. Saad, Alexander Hodge, David W. Greening, Rebecca Lim, William Sievert
Software Mentions: 1
Published: about 7 years ago

10.3389/fphar.2020.01337

Systematic Investigation of the Efficacy of Sinitang Decoction Against Ulcerative Colitis
Cited by: 6
Author(s): Enhui Ji, Tingting Wang, Jing Xu, Jingjing Fan, Yi Zhang, Yongxia Guan, Hongjun Yang, Junying Wei, Guimin Zhang, Lu-Qi Huang
Software Mentions: 1
Published: about 4 years ago

10.3389/fphar.2020.563750

Licorice Ameliorates Cisplatin-Induced Hepatotoxicity Through Antiapoptosis, Antioxidative Stress, Anti-Inflammation, and Acceleration of Metabolism
Cited by: 22
Author(s): Qiong Man, Yi Deng, Pengjie Li, Jun Ma, Zhijun Yang, Xinggang Yang, Yan Zhou, Xiao Long Yan
Software Mentions: 1
Published: about 4 years ago

10.3389/fphys.2015.00261

Analysis of the protein related receptor GPR92 in G-cells
Cited by: 13
Author(s): Amelie Therese Rettenberger, Waltraud X. Schulze, Heinz Breer, Désirée Haid
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2019.00180

Diet Induced Obesity Alters Intestinal Cytoplasmic Lipid Droplet Morphology and Proteome in the Postprandial Response to Dietary Fat
Cited by: 30
Author(s): Theresa D’Aquila, Alyssa S. Zembroski, Kimberly K. Buhman
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2018.00748

Antennal Protein Profile in Honeybees: Caste and Task Matter More Than Age
Cited by: 16
Author(s): Immacolata Iovinella, Federico Cappa, Alessandro Cini, Iacopo Petrocelli, Rita Cervo, Stefano Turillazzi, Francesca Romana Dani
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2020.573433

Proteomic Analysis of Atrial Appendages Revealed the Pathophysiological Changes of Atrial Fibrillation
Cited by: 10
Author(s): Ban Liu, Xiang Li, Cuimei Zhao, Yuliang Wang, Mengwei Lv, Xin Shi, Chen Han, Pratik Pandey, Chunhua Qian, Changfa Guo, Yangyang Zhang
Software Mentions: 1
Published: about 4 years ago

10.3389/fphys.2018.00836

Comparative Phospho- and Acetyl Proteomics Analysis of Posttranslational Modifications Regulating Intestine Regeneration in Sea Cucumbers
Cited by: 7
Author(s): Lina Sun, Chenggang Lin, Xiaoni Li, Lili Xing, Da Huo, Jingjing Sun, Libin Zhang, Hongsheng Yang
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2018.00939

Andrographolide Sulfonate Attenuates Acute Lung Injury by Reducing Expression of Myeloperoxidase and Neutrophil-Derived Proteases in Mice
Cited by: 15
Author(s): Fei Gao, Xing Liu, Ziying Shen, Xiaohui Jia, Han He, Jing Gao, Jianhong Wu, Chunhong Jiang, Hu Zhou, Yiping Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2019.00534

Detailed Dissection of UBE3A-Mediated DDI1 Ubiquitination
Cited by: 15
Author(s): Nagore Elu, Nerea Osinalde, Javier Beaskoetxea, Juanma Ramírez, Benoît Lectez, Kerman Aloria, José Antonio Rodriguez, Jesús M. Arizmendi, Ugo Mayor
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.01673

Highly Efficient Single-Step Enrichment of Low Abundance Phosphopeptides from Plant Membrane Preparations
Cited by: 20
Author(s): Xu Wu, Lin Xi, Heidi Pertl-Obermeyer, Zhi Li, Liang‐Cui Chu, Waltraud X. Schulze
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2018.01735

Absolute Quantification of Grapevine Red Blotch Virus in Grapevine Leaf and Petiole Tissues by Proteomics
Cited by: 10
Author(s): Natasha Buchs, Sophie Braga-Lagache, Anne Christine Uldry, Justine Brodard, Christophe Debonneville, Jean-Sébastien Reynard, Manfred Heller
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.01927

Global Lysine Acetylome Analysis of Desiccated Somatic Embryos of Picea asperata
Cited by: 15
Author(s): Yan Xia, Danlong Jing, Lisheng Kong, Jianwei Zhang, Fangqun Ouyang, Hanguo Zhang, Junhui Wang, Shougong Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1008855

SAMHD1 phosphorylation and cytoplasmic relocalization after human cytomegalovirus infection limits its antiviral activity
Cited by: 12
Author(s): Simone De Meo, Valentina Dell’Oste, Rosa Molfetta, Valentina Tassinari, Lavinia Vittoria Lotti, Simone Vespa, Benedetta Pignoloni, Daniela Angela Covino, Laura Fantuzzi, Roberta Bona, Alessandra Zingoni, Ilaria Nardone, Matteo Biolatti, Alessandra Coscia, Rossella Paolini, Monsef Benkirane, Fredrik Edfors, Tatyana Sandalova, Adnane Achour, John Hiscott, Santo Landolfo, Angela Santoni, Cristina Cerboni
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1009134

The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cells
Cited by: 4
Author(s): Samuel Stokes, Floriane Almire, Michael H. Tatham, Steven McFarlane, Peter Mertens, Emilie Pondeville, Chris Boutell
Software Mentions: 1
Published: almost 4 years ago

10.1073/pnas.1910262116

Corazonin signaling integrates energy homeostasis and lunar phase to regulate aspects of growth and sexual maturation in <i>Platynereis</i>
Cited by: 44
Author(s): Gabriele Andreatta, Caroline Broyart, Charline Borghgraef, Karim Vadiwala, V. V. Kozin, Alessandra Polo, Andrea Bileck, Isabel Beets, Liliane Schoofs, Christopher Gerner, Florian Raible
Software Mentions: 1
Published: almost 5 years ago

10.1073/pnas.1905641117

Direct visualization of degradation microcompartments at the ER membrane
Cited by: 62
Author(s): Sahradha Albert, Wojciech Wietrzyñski, Chia-Wei Lee, Miroslava Schaffer, Florian Beck, Jan M. Schuller, Patrice A. Salomé, Jürgen M. Plitzko, Wolfgang Baumeister, Benjamin D. Engel
Software Mentions: 1
Published: almost 5 years ago

10.1186/1477-5956-10-28

In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea
Cited by: 75
Author(s): Karlheinz Mann, Eric Edsinger, Matthias Mann
Software Mentions: 1
Published: almost 13 years ago

10.1186/1477-5956-11-40

The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell
Cited by: 41
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: almost 12 years ago

10.1186/1477-5956-11-43

Quantitative proteomics reveals regulatory differences in the chondrocyte secretome from human medial and lateral femoral condyles in osteoarthritic patients
Cited by: 35
Author(s): Johan Stenberg, Ulla Rüetschi, Eva Skiöldebrand, Johan Kärrholm, Anders Lindahl
Software Mentions: 1
Published: about 11 years ago

10.1186/1477-5956-12-41

Probing SH2-domains using Inhibitor Affinity Purification (IAP)
Cited by: 10
Author(s): Michael Höfener, Stephanie Heinzlmeir, Bernhard Küster, Norbert Sewald
Software Mentions: 1
Published: over 10 years ago

10.1186/s12953-015-0078-1

Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes
Cited by: 27
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: about 9 years ago

10.1186/s12953-015-0086-1

The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)
Cited by: 29
Author(s): Karlheinz Mann
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12953-016-0110-0

An interactomics overview of the human and bovine milk proteome over lactation
Cited by: 33
Author(s): Lina Zhang, Aalt D. J. van Dijk, Kasper Hettinga
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12953-020-00165-5

Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation
Cited by: 5
Author(s): Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa HaileMariam, Shiferaw Bekele, Mesfin Tamirat, Aboma Zewude, Temesgen Mohamed, Girmay Medhin, Mengistu Legesse, Yu Yoshida, Gobena Ameni, Rembert Pieper
Software Mentions: 1
Published: about 4 years ago

10.3390/proteomes4020016

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer
Cited by: 5
Author(s): Jae-Young Kim, Paul A. Stewart, Adam L. Borne, Bin Fang, Eric A. Welsh, Yian Ann Chen, Steven Eschrich, John M. Koomen, Eric B. Haura
Software Mentions: 1
Published: over 8 years ago

10.3390/proteomes4010010

Comparing Simplification Strategies for the Skeletal Muscle Proteome
Cited by: 2
Author(s): Bethany Geary, Iain S. Young, Phillip Cash, Phillip D. Whitfield, Mary K. Doherty
Software Mentions: 1
Published: over 8 years ago

10.3390/proteomes6020019

A Proteomic View of Salmonella Typhimurium in Response to Phosphate Limitation
Cited by: 8
Author(s): Jiezhang Jiang, Kaiwen Yu, Linlu Qi, Yanhua Liu, Sen Cheng, Mei Wu, Zhen Wang, Jiaqi Fu, Xiaoyun Liu
Software Mentions: 1
Published: over 6 years ago

10.3390/proteomes8020006

Vesiculation of Red Blood Cells in the Blood Bank: A Multi-Omics Approach towards Identification of Causes and Consequences
Cited by: 11
Author(s): Joames Kauffimann Freitas Leal, Edwin Lasonder, Vikram Sharma, Jürgen Schiller, Guido Fanelli, Sara Rinalducci, Roland Brock, G.J.C.G.M. Bosman
Software Mentions: 1
Published: over 4 years ago

10.3390/proteomes8030016

High-Throughput Identification of the Rhodnius prolixus Midgut Proteome Unravels a Sophisticated Hematophagic Machinery
Cited by: 10
Author(s): Radouane Ouali, Karen Caroline Valentim de Brito, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: over 4 years ago

10.3390/proteomes9020019

Combining Mass Spectrometry-Based Phosphoproteomics with a Network-Based Approach to Reveal FLT3-Dependent Mechanisms of Chemoresistance
Cited by: 4
Author(s): Giusj Monia Pugliese, Sara Latini, Giorgia Massacci, Livia Perfetto, Francesca Sacco
Software Mentions: 1
Published: over 3 years ago

10.3390/proteomes9030037

Insulin and 5-Aminoimidazole-4-Carboxamide Ribonucleotide (AICAR) Differentially Regulate the Skeletal Muscle Cell Secretome
Cited by: 4
Author(s): Alba González-Franquesa, Lone Peijs, Daniel T. Cervone, Ceren Koçana, Juleen R. Zierath, Atul S. Deshmukh
Software Mentions: 1
Published: over 3 years ago

10.1002/pmic.201500400

Group 1 metabotropic glutamate receptors 1 and 5 form a protein complex in mouse hippocampus and cortex
Cited by: 50
Author(s): Nikhil J. Pandya, Remco V. Klaassen, Roel C. van der Schors, Johan A. Slotman, Adriaan B. Houtsmuller, August B. Smit, Ka Wan Li
Software Mentions: 1
Published: about 8 years ago

10.1002/pmic.201600213

Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation
Cited by: 4
Author(s): René B. H. Braakman, Christoph Stingl, Madeleine M.A. Tilanus-Linthorst, Carolien H.M. van Deurzen, Mieke Timmermans, Marcel Smid, John A. Foekens, Theo M. Luider, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 7 years ago

10.1002/pmic.201400527

Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network in<i>Saccharomyces cerevisiae</i>
Cited by: 13
Author(s): Andrew F. Jarnuczak, Patrick A. Eyers, Jean-Marc Schwartz, Chris M. Grant, Simon J. Hubbard
Software Mentions: 1
Published: over 9 years ago

10.1002/pmic.201500503

Absolute protein quantification of the yeast chaperome under conditions of heat shock
Cited by: 17
Author(s): R. Mackenzie, Craig Lawless, Stephen W. Holman, Karin Lanthaler, Robert J. Beynon, Chris M. Grant, Simon J. Hubbard, Patrick A. Eyers
Software Mentions: 1
Published: over 8 years ago

10.1002/prca.201900029

Moonlighting Proteins and Cardiopathy in the Spatial Response of MCF‐7 Breast Cancer Cells to Tamoxifen
Cited by: 2
Author(s): Abdulrab Ahmed M. Alkhanjaf, Roberto Raggiaschi, Mark Crawford, Gabriella Pinto, Jasminka Godovac‐Zimmermann
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.161004

Proteomic profiling of archaeological human bone
Cited by: 70
Author(s): Rikai Sawafuji, Enrico Cappellini, Tomohito Nagaoka, Anna K. Fotakis, Rosa Rakownikow Jersie-Christensen, Jesper V. Olsen, Kazuaki Hirata, Shintaroh Ueda
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2018.11.015

Citrate reduced oxidative damage in stem cells by regulating cellular redox signaling pathways and represent a potential treatment for oxidative stress-induced diseases
Cited by: 22
Author(s): Xiaopei Wu, Hanren Dai, Langlang Liu, Chao Xu, Yi Yin, Jing Yi, Monika Bielec, Yingchao Han, Shipu Li
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.redox.2018.101087

Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction
Cited by: 26
Author(s): Kaibo Xie, Christina Bunse, Katrin Marcus, Lars I. Leichert
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.redox.2019.101318

Covalent Aurora A regulation by the metabolic integrator coenzyme A
Cited by: 39
Author(s): Yugo Tsuchiya, Dominic P. Byrne, Selena G. Burgess, Jens Bormann, Jovana Baković, Yueyang Huang, Alexander Zhyvoloup, Bess Yi Kun Yu, Sew Y. Peak‐Chew, Trang Tran, Fiona Bellany, Alethea B. Tabor, Aw Edith Chan, Lalitha Guruprasad, O. M. Garifulin, Valeriy Filonenko, Matthias Vonderach, Samantha Ferries, Patrick A. Eyers, John Carroll, Mark Skehel, Richard Bayliss, Patrick A. Eyers, Ivan Gout
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.redox.2020.101597

Bioenergetic shift and actin cytoskeleton remodelling as acute vascular adaptive mechanisms to angiotensin II in murine retina and ophthalmic artery
Cited by: 15
Author(s): Natarajan Perumal, Lars Straßburger, David P. Herzog, Marianne B. Müller, Norbert Pfeiffer, Franz H. Grus, Caroline Manicam
Software Mentions: 1
Published: over 4 years ago

10.1186/s12931-016-0362-3

Identification of vitamin D sensitive pathways during lung development
Cited by: 36
Author(s): Ling Chen, Richard Wilson, Ellen Bennett, Graeme R. Zosky
Software Mentions: 1
Published: over 8 years ago

10.1016/j.xpro.2020.100022

Assessing Budding Yeast Phosphoproteome Dynamics in a Time-Resolved Manner using TMT10plex Mass Tag Labeling
Cited by: 6
Author(s): Andrew W. Jones, Helen Flynn, Frank Uhlmann, Ambrosius P. Snijders, Sandra A. Touati
Software Mentions: 1
Published: over 4 years ago

10.1016/j.xpro.2021.100462

Purification and quantitative proteomic analysis of cell bodies and protrusions
Cited by: 0
Author(s): Maria Dermit, Faraz K. Mardakheh
Software Mentions: 1
Published: over 3 years ago

10.1016/j.xpro.2021.100682

A protocol for analyzing the protein terminome of human cancer cell line culture supernatants
Cited by: 2
Author(s): Kazuya Tsumagari, Chih‐Hsiang Chang, Yasushi Ishihama
Software Mentions: 1
Published: about 3 years ago

10.1126/sciadv.1701016

Ligand binding to a G protein–coupled receptor captured in a mass spectrometer
Cited by: 47
Author(s): Hsin‐Yung Yen, Jonathan T. S. Hopper, Idlir Liko, Timothy M. Allison, Yun Zhu, Dejian Wang, Monika Stegmann, Shabaz Mohammed, Beili Wu, Carol V. Robinson
Software Mentions: 1
Published: over 7 years ago

10.1126/sciadv.aay6804

A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules
Cited by: 35
Author(s): Pilar Gutiérrez-Escribano, Matthew D. Newton, Aida Llauró, Jonas Huber, Loredana Tanasie, Joseph Davy, Isabel Aly, Ricardo Aramayo, Alex Montoya, Holger Kramer, Johannes Stigler, David Rueda, Luís Aragón
Software Mentions: 1
Published: about 5 years ago

10.1038/sdata.2015.47

The proteome of mouse vestibular hair bundles over development
Cited by: 34
Author(s): Jocelyn F. Krey, Nicholas E. Sherman, Erin Jeffery, Dongseok Choi, Peter G. Barr-Gillespie
Software Mentions: 1
Published: about 9 years ago

10.1038/sdata.2018.31

Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells
Cited by: 22
Author(s): Giorgio Giurato, Giovanni Nassa, Annamaria Salvati, Elena Alexandrova, Francesca Rizzo, Tuula A. Nyman, Alessandro Weisz, Roberta Tarallo
Software Mentions: 1
Published: over 6 years ago

10.1038/sdata.2018.128

Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells
Cited by: 16
Author(s): Jocelyn F. Krey, Déborah I. Scheffer, Dongseok Choi, Ashok P. Reddy, Larry L. David, David P. Corey, Peter G. Barr-Gillespie
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-019-0166-7

A dataset describing a suite of novel antibody reagents for the RAS signaling network
Cited by: 4
Author(s): Regine M. Schoenherr, Dongqing Huang, Uliana J. Voytovich, Richard G. Ivey, Jacob J. Kennedy, Richard G. Saul, Simona Colantonio, Rhonda R. Roberts, Joseph G. Knotts, Jan Kaczmarczyk, Candice Perry, Stephen M. Hewitt, William Bocik, Gordon Whiteley, Tara Hiltke, Emily S. Boja, Henry Rodriguez, Jeffrey R. Whiteaker, Amanda G. Paulovich
Software Mentions: 1
Published: about 5 years ago

10.1038/s41597-019-0179-2

The RNA-mediated estrogen receptor α interactome of hormone-dependent human breast cancer cell nuclei
Cited by: 13
Author(s): Giovanni Nassa, Giorgio Giurato, Annamaria Salvati, Valerio Gigantino, Giovanni Pecoraro, Jessica Lamberti, Francesca Rizzo, Tuula A. Nyman, Roberta Tarallo, Alessandro Weisz
Software Mentions: 1
Published: about 5 years ago

10.1038/s41597-020-00678-w

Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis
Cited by: 18
Author(s): Julia Mergner, Martin Frejno, Maxim Messerer, Daniel Lang, Patroklos Samaras, Mathias Wilhelm, Klaus Mayer, Claus Schwechheimer, Bernhard Küster
Software Mentions: 1
Published: about 4 years ago

10.1038/s41597-021-00884-0

Triple SILAC identified progestin-independent and dependent PRA and PRB interacting partners in breast cancer
Cited by: 3
Author(s): Prangwan Pateetin, György Hutvágner, Sarah Bajan, Matthew P. Padula, Eileen McGowan, Viroj Boonyaratanakornkit
Software Mentions: 1
Published: over 3 years ago

10.1038/srep09520

Suberoylanilide Hydroxamic Acid Treatment Reveals Crosstalks among Proteome, Ubiquitylome and Acetylome in Non-Small Cell Lung Cancer A549 Cell Line
Cited by: 68
Author(s): Qiulian Wu, Zhongyi Cheng, Jun Zhu, Xu Wang, Xiaojun Peng, Chuangbin Chen, Wenting Li, Fengsong Wang, Lejie Cao, Xingling Yi, Zhiwei Wu, Jing Li, Pingsheng Fan
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12668

Establishment of a new OSCC cell line derived from OLK and identification of malignant transformation-related proteins by differential proteomics approach
Cited by: 17
Author(s): Dong Yan, Qun Zhao, Xiaoyan Ma, Guowu Ma, Caiyun Liu, Zhuwen Chen, Liyuan Yu, Xuefeng Li, Yanguang Zhang, Shujuan Shao, Jing Xiao, Jia Li, Weimin Zhang, Ming Fu, Lei Dong, X Yang, Xu Guo, Liyan Xue, Fei Fang, Qimin Zhan, Lihua Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep16269

Substrates of the ASB2α E3 ubiquitin ligase in dendritic cells
Cited by: 10
Author(s): Camille A. Spinner, Sandrine Uttenweiler-Joseph, Arnaud Métais, Alexandre Stella, Odile Burlet‐Schiltz, Christel Moog-Lutz, Isabelle Lamsoul, Pierre G. Lutz
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16305

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles
Cited by: 102
Author(s): Flávia Vischi Winck, Ana Carolina Prado Ribeiro, Romênia R. Domingues, Ling Liu, Diego Mauricio Riaño-Pachón, César Rivera, Thaís Bianca Brandão, Adriele Ferreira Gouvêa, Alan Roger Santos‐Silva, Ricardo D. Coletta, Adriana Franco Paes Leme
Software Mentions: 1
Published: about 9 years ago

10.1038/srep20043

Alterations of the cytoskeleton in human cells in space proved by life-cell imaging
Cited by: 88
Author(s): Thomas J. Corydon, Sascha Kopp, Markus Wehland, Markus Braun, Andreas Schütte, T. Mayer, Thomas Hülsing, Hergen Oltmann, Burkhard Schmitz, Ruth Hemmersbach, Daniela Grimm
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20108

Acetylome analysis reveals the involvement of lysine acetylation in biosynthesis of antibiotics in Bacillus amyloliquefaciens
Cited by: 44
Author(s): Lin Liu, Guangyuan Wang, Limin Song, Binna Lv, Wenxing Liang
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep22675

A covalent and cleavable antibody-DNA conjugation strategy for sensitive protein detection via immuno-PCR
Cited by: 65
Author(s): Jessie A.G.L. van Buggenum, Jan P. Gerlach, Selma Eising, Lise Schoonen, Roderick A. P. M. van Eijl, Sabine E.J. Tanis, Mark Hogeweg, Nina C. Hubner, Jan C. M. van Hest, Kimberly M. Bonger, Klaas W. Mulder
Software Mentions: 1
Published: over 8 years ago

10.1038/srep22635

Quantitative proteomics study of the neuroprotective effects of B12 on hydrogen peroxide-induced apoptosis in SH-SY5Y cells
Cited by: 26
Author(s): Liang Zhong, Juntuo Zhou, Xi Chen, Yonggen Lou, Dan Liú, Xiajuan Zou, Bin Yang, Yuxin Yin, Yan Pan
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23530

Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes
Cited by: 8
Author(s): Nerea Osinalde, Virginia Sánchez-Quiles, Blagoy Blagoev, Irina Kratchmarova
Software Mentions: 1
Published: over 8 years ago

10.1038/srep21158

Analysis of proteome dynamics inside the silk gland lumen of Bombyx mori
Cited by: 36
Author(s): Zhaoming Dong, Yan Zhang, Qianru Song, Xiaolu Zhang, Pengchao Guo, Dandan Wang, Qingyou Xia
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25518

An Evaluation of Blood Compatibility of Silver Nanoparticles
Cited by: 146
Author(s): He Huang, Wenjia Lai, Menghua Cui, Ling Liang, Yuchen Lin, Qiaojun Fang, Ying Liu, Liming Xie
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26557

FAM83H and casein kinase I regulate the organization of the keratin cytoskeleton and formation of desmosomes
Cited by: 40
Author(s): Tetsurō Kuga, Mitsuho Sasaki, Taisei Mikami, Y. Miake, Jun Adachi, Shimizu Maiko, Youhei Saito, Minako Koura, Yasunori Takeda, Junichiro Matsuda, Takeshi Tomonaga, Yuji Nakayama
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28321

Transformed MDCK cells secrete elevated MMP1 that generates LAMA5 fragments promoting endothelial cell angiogenesis
Cited by: 26
Author(s): Shashi K. Gopal, David W. Greening, Hong Zhu, Richard J. Simpson, Rommel A. Mathias
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28631

Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications
Cited by: 32
Author(s): Nevena Cvetešić, Maja Šemanjski, Boumediene Soufi, Karsten Krug, Ita Gruić-Sovulj, Boris Maček
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29660

Annexin A1 contributes to pancreatic cancer cell phenotype, behaviour and metastatic potential independently of Formyl Peptide Receptor pathway
Cited by: 57
Author(s): Raffaella Belvedere, Valentina Bizzarro, Giovanni Forte, Fabrizio Dal Piaz, Luca Parente, Antonello Petrella
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29897

Acetylome analysis reveals the involvement of lysine acetylation in diverse biological processes in Phytophthora sojae
Cited by: 32
Author(s): Delong Li, Binna Lv, Lei Tan, Qiwen Yang, Wenxing Liang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29759

Glaucoma related Proteomic Alterations in Human Retina Samples
Cited by: 44
Author(s): Sebastian Funke, Natarajan Perumal, Stefanie Beck, Silke Gabel-Scheurich, Carsten Schmelter, Julia Teister, Claudia Gerbig, Oliver W. Gramlich, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29629

Proteomics analysis of human tears from aqueous-deficient and evaporative dry eye patients
Cited by: 88
Author(s): Natarajan Perumal, Sebastian Funke, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31078

The N-myristoylome of Trypanosoma cruzi
Cited by: 20
Author(s): Adam J. Roberts, Alan H. Fairlamb
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31697

Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation
Cited by: 231
Author(s): Ella Nukarinen, Thomas Nägele, Lorenzo Pedrotti, Bernhard Wurzinger, Andrea Mair, Ramona Landgraf, Frederik Börnke, Johannes Hanson, Markus Teige, Elena Baena-González, Wolfgang Dröge‐Laser, Wolfram Weckwerth
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31811

Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells
Cited by: 6
Author(s): Yajun Xie, Jinlong Wang, Yuanya Zhang, Xiaofei Liu, Xiaorong Wang, Kehui Liu, Xiahe Huang, Yingchun Wang
Software Mentions: 1
Published: about 8 years ago

10.1038/srep32518

Integrated proteomics and metabolomics analysis of rat testis: Mechanism of arsenic-induced male reproductive toxicity
Cited by: 62
Author(s): Qingyu Huang, Liang Luo, Ambreen Alamdar, Jie Zhang, Liangpo Liu, Meiping Tian, Syed Ali Musstjab Akber Shah Eqani, Heqing Shen
Software Mentions: 1
Published: about 8 years ago

10.1038/srep32511

iTRAQ-based proteomic analysis of plasma reveals abnormalities in lipid metabolism proteins in chronic kidney disease-related atherosclerosis
Cited by: 20
Author(s): Magdalena Łuczak, Dorota Formanowicz, Łukasz Marczak, Joanna Suszyńska-Zajczyk, Elżbieta Pawliczak, Maria Wanic-Kossowska, Maciej Stobiecki
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34255

Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells
Cited by: 71
Author(s): Violette Gautier, Corinne Cayrol, Dorian Farache, Stéphane Roga, Bernard Monsarrat, Odile Burlet‐Schiltz, Anne Gonzalez de Peredo, Jean-Philippe Girard
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35306

Ergothioneine Biosynthesis and Functionality in the Opportunistic Fungal Pathogen, Aspergillus fumigatus
Cited by: 52
Author(s): Kevin J. Sheridan, Beatrix E. Lechner, Grainne O’ Keeffe, Markus A. Keller, Ernst R. Werner, Herbert Lindner, Gary W. Jones, Hubertus Haas, Seán Doyle
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36109

Integrative omics connects N-glycoproteome-wide alterations with pathways and regulatory events in induced pluripotent stem cells
Cited by: 2
Author(s): Putty‐Reddy Sudhir, Madireddy Pavana Kumari, Wei-Ting Hsu, Chein‐Hung Chen, Hung‐Chih Kuo, Chung-Hsuan Chen
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36338

Detailed Analysis of Protein Topology of Extracellular Vesicles–Evidence of Unconventional Membrane Protein Orientation
Cited by: 106
Author(s): Aleksander Cvjetkovic, Su Chul Jang, Barbora Konečná, Johanna L. Höög, Carina Sihlbom, Cecilia Lässer, Jan Lötvall
Software Mentions: 1
Published: about 8 years ago

10.1038/srep37478

Crosstalk among proteome, acetylome and succinylome in colon cancer HCT116 cell treated with sodium dichloroacetate
Cited by: 21
Author(s): Da‐Yuan Zhu, Lidan Hou, Bin Hu, Hang Zhao, Jie Sun, Jianhua Wang, Xiangjun Meng
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep38298

First insight into the proteome landscape of the porcine short posterior ciliary arteries: Key signalling pathways maintaining physiologic functions
Cited by: 9
Author(s): Caroline Manicam, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus, Adrian Gericke
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep40756

A comprehensive platform for the analysis of ubiquitin-like protein modifications using in vivo biotinylation
Cited by: 50
Author(s): Lucía Pirone, Wendy Xolalpa, Jón Otti Sigurðsson, Juanma Ramírez, Coralia Pérez, Monika González, Ainara Ruiz de Sabando, Félix Elortza, Manuel Sánchez Rodríguez, Ugo Mayor, Jesper V. Olsen, Rosa Barrio, James D. Sutherland
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep40852

Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network
Cited by: 28
Author(s): Jie Gao, Sheng Zhang, Wei He, Xiuhong Shao, Chunyu Li, Wei YueRong, Guiming Deng, Ruibin Kuang, Chunhua Hu, Ganjun Yi, Qiaosong Yang
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep41408

A novel approach to analyze lysosomal dysfunctions through subcellular proteomics and lipidomics: the case of NPC1 deficiency
Cited by: 89
Author(s): Arun Kumar Tharkeshwar, Jesse Trekker, Wendy Vermeire, Jarne Pauwels, Ragna Sannerud, David A. Priestman, Daniëlle te Vruchte, Katlijn Vints, Pieter Baatsen, Jean-Paul Decuypere, Huiqi Lu, Shaun Martin, Peter Vangheluwe, Johannes V. Swinnen, Liesbet Lagae, Francis Impens, Frances M. Platt, Kris Gevaert, Wim Annaert
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep43858

A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations
Cited by: 19
Author(s): Alexander D. Giddey, Elise de Kock, Kehilwe C. Nakedi, Shaun Garnett, Andrew J. M. Nel, Nelson C. Soares, Jonathan M. Blackburn
Software Mentions: 1
Published: over 7 years ago

10.1038/srep44611

The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2
Cited by: 24
Author(s): Kamil Sklodowski, Janin Riedelsberger, Natalia Raddatz, Gonzalo Riadi, Julio Caballero, Isabelle Chérel, Waltraud X. Schulze, Alexander Graf, Ingo Drèyer
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46455

Quantitative analyses of the global proteome and phosphoproteome reveal the different impacts of propofol and dexmedetomidine on HT22 cells
Cited by: 5
Author(s): Honggang Zhang, Juan Ye, Zhaomei Shi, Chen Bu, Feichao Bao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00841-1

Systematic Synergy of Glucose and GLP-1 to Stimulate Insulin Secretion Revealed by Quantitative Phosphoproteomics
Cited by: 5
Author(s): Jia-shu Tang, Qing-run Li, Jiaming Li, Jiarui Wu, Rong Zeng
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02362-3

Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
Cited by: 35
Author(s): Magali Lago, Véronique Monteil, Thibaut Douché, Julien Guglielmini, Alexis Criscuolo, Corinne Maufrais, Mariette Matondo, Françoise Norel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03369-6

First comprehensive proteome analysis of lysine crotonylation in seedling leaves of Nicotiana tabacum
Cited by: 49
Author(s): Hangjun Sun, Xiaowei Liu, Fangfang Li, Wei Li, Jing Zhang, Zhixin Xiao, Lili Song, Ying Liu, Fenglong Wang, Jinguang Yang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-05736-9

TKI-addicted ROS1-rearranged cells are destined to survival or death by the intensity of ROS1 kinase activity
Cited by: 9
Author(s): Hideki Ogura, Yuka Nagatake-Kobayashi, Jun Adachi, Takeshi Tomonaga, Naoya Fujita, Ryohei Katayama
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07999-8

The [PSI +] yeast prion does not wildly affect proteome composition whereas selective pressure exerted on [PSI +] cells can promote aneuploidy
Cited by: 12
Author(s): Patrick H. W. Chan, Lisa Lee, Erin Kim, Tony Hui, Nikolay Stoynov, Roy Nassar, Michelle Moksa, Dale M. Cameron, Martin Hirst, Joerg Gsponer, Thibault Mayor
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07109-8

Differential oxidation of protein-tyrosine phosphatases during zebrafish caudal fin regeneration
Cited by: 10
Author(s): Wei Wu, Alexander James Hale, Simone Lemeer, Jeroen den Hertog
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-08975-y

Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression
Cited by: 13
Author(s): Gyrid Nygaard, Lars Herfindal, Kathrine Sivertsen Åsrud, Ronja Bjørnstad, Reidun Kristin Kopperud, Eystein Oveland, Frode S. Berven, Lene Elisabeth Myhren, Erling A. Høivik, Turid Helen Felli Lunde, Marit Bakke, Stein Ove Døskeland, Frode Selheim
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-11643-w

Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry
Cited by: 23
Author(s): Maaike Rijkers, Bart L. van den Eshof, Pieter F. van der Meer, Floris P.J. van Alphen, Dirk de Korte, Frank W.G. Leebeek, Alexander B. Meijer, Jan Voorberg, A.J. Gerard Jansen
Software Mentions: 1
Published: about 7 years ago

Projects: cran: Andromeda

Papers Mentioning Andromeda 1,724