cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/life11070683

Proteomic Analysis Unveils Expressional Changes in Cytoskeleton- and Synaptic Plasticity-Associated Proteins in Rat Brain Six Months after Withdrawal from Morphine
Cited by: 12
Author(s): Zdeňka Drastichová, Lucie Hejnová, Radka Moravcová, Jiřı́ Novotný
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.201900422

Pseudomonas aeruginosalectin LecB impairs keratinocyte fitness by abrogating growth factor signalling
Cited by: 11
Author(s): Alessia Landi, Muriel Mari, Svenja Kleiser, Tobias Wolf, Christine Gretzmeier, Isabel Wilhelm, Dimitra Kiritsi, Roland Thünauer, Roger Geiger, Alexander Nyström, Fulvio Reggiori, Julie Claudinon, Winfried Römer
Software Mentions: 1
Published: about 5 years ago

10.26508/lsa.202000847

Peptide-based quorum sensing systems in Paenibacillus polymyxa
Cited by: 11
Author(s): Maya Voichek, Sandra Maaß, Tobias Kroniger, Dörte Becher, Rotem Sorek
Software Mentions: 1
Published: over 4 years ago

10.26508/lsa.201800219

Mitochondrial stress response triggered by defects in protein synthesis quality control
Cited by: 22
Author(s): Uwe Richter, Kah Ying Ng, Fumi Suomi, Paula Marttinen, Tiina Turunen, Christopher B. Jackson, Anu Suomalainen, Helena Vihinen, Eija Jokitalo, Tuula A. Nyman, Marita A. Isokallio, James B. Stewart, Cecilia Mancini, Alfredo Brusco, Sara Seneca, Anne Lombès, Robert W. Taylor, Brendan J. Battersby
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.201800070

Proteomics and C9orf72 neuropathology identify ribosomes as poly-GR/PR interactors driving toxicity
Cited by: 81
Author(s): Hannelore Hartmann, Daniel Hornburg, Mareike Czuppa, Jakob Bader, Meike Michaelsen, Daniel Farny, Thomas Arzberger, Matthias Mann, Felix Meissner, Dieter Edbauer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12944-020-01350-3

Effect of niacin monotherapy on high density lipoprotein composition and function
Cited by: 7
Author(s): Scott M. Gordon, Marcelo Amar, Kianoush Jeiran, Michael Stagliano, Emma Staller, Martin P. Playford, Nehal N. Mehta, Tomáš Vaisar, Alan T. Remaley
Software Mentions: 1
Published: over 4 years ago

10.3390/md19080420

Large-Scale Plasma Peptidomic Profiling Reveals a Novel, Nontoxic, Crassostrea hongkongensis-Derived Antimicrobial Peptide against Foodborne Pathogens
Cited by: 7
Author(s): Fan Mao, Yongbo Bao, Nai-Kei Wong, Minwei Huang, Kunna Liu, Xiangyu Zhang, Zhuo Yang, Wenjie Yi, Xiao Ou Shu, Zhiming Xiang, Yu Zhou, Yang Zhang
Software Mentions: 1
Published: over 3 years ago

10.3390/md18070362

Shotgun Proteomics of Ascidians Tunic Gives New Insights on Host–Microbe Interactions by Revealing Diverse Antimicrobial Peptides
Cited by: 8
Author(s): Ana Lemos de Matos, Dany Domínguez-Pérez, Daniela Almeida, Guillermı́n Agüero-Chapin, Alexandre Campos, Hugo Osório, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 1
Published: over 4 years ago

10.3390/membranes11030199

Trastuzumab Modulates the Protein Cargo of Extracellular Vesicles Released by ERBB2+ Breast Cancer Cells
Cited by: 5
Author(s): Silvia Marconi, Sara Santamaria, Martina Bartolucci, Sara Stigliani, Cinzia Aiello, Maria Cristina Gagliani, Grazia Bellese, Andrea Petretto, Katia Cortese, Patrizio Castagnola
Software Mentions: 1
Published: over 3 years ago

10.3390/metabo10040146

Acetylation of Phenylalanine Hydroxylase and Tryptophan 2,3-Dioxygenase Alters Hepatic Aromatic Amino Acid Metabolism in Weaned Piglets
Cited by: 0
Author(s): Lu Huang, Weilei Yao, Tongxin Wang, Juan Li, Qiongyu He, Feiruo Huang
Software Mentions: 1
Published: over 4 years ago

10.1016/j.mex.2018.05.013

Gel-free sample preparation techniques and bioinformatic enrichment analysis to in depth characterise the cell wall proteome of mycobacteria
Cited by: 3
Author(s): Clemens Hermann, Alexander D. Giddey, Andrew J. M. Nel, Nelson C. Soares, Jonathan M. Blackburn
Software Mentions: 1
Published: almost 7 years ago

10.1111/1751-7915.13476

Development of omics‐based protocols for the microbiological characterization of multi‐strain formulations marketed as probiotics: the case of VSL#3
Cited by: 27
Author(s): Diego Mora, Rossella Filardi, Stefania Arioli, Sjef Boeren, Steven Aalvink, Willem M. de Vos
Software Mentions: 1
Published: over 5 years ago

10.15698/mic2017.10.593

Identification of SUMO conjugation sites in the budding yeast proteome
Cited by: 16
Author(s): Miguel Esteras, I-Chun Liu, Ambrosius P. Snijders, Adam Jarmuz, Luís Aragón
Software Mentions: 1
Published: about 7 years ago

10.1186/s12934-016-0417-7

Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain
Cited by: 66
Author(s): Quinn Dickinson, Scott Bottoms, Li Hinchman, Sean J. McIlwain, Sheena Li, Chad L. Myers, Charles Boone, Joshua J. Coon, Alexander S. Hebert, Trey K. Sato, Robert Landick, Jeff S. Piotrowski
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12934-020-01408-y

Improving the fermentable sugar yields of wheat straw by high-temperature pre-hydrolysis with thermophilic enzymes of Malbranchea cinnamomea
Cited by: 9
Author(s): Ning Zhu, Hongmei Jin, Xiangbin Kong, Yanyun Zhu, Xiaomei Ye, Xi Yao, Jing Du, Bingqing Li, Menghan Lou, Ghulam Mustafa Shah
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-017-0848-9

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast
Cited by: 13
Author(s): Scott Bottoms, Quinn Dickinson, Mick McGee, Li Hinchman, Alan Higbee, Alex S. Hebert, Jose Serate, Dan Xie, Yaoping Zhang, Joshua J. Coon, Chad L. Myers, Robert Landick, Jeff S. Piotrowski
Software Mentions: 1
Published: almost 7 years ago

10.1099/mic.0.000892

Candida albicans increases the pathogenicity of Staphylococcus aureus during polymicrobial infection of Galleria mellonella larvae
Cited by: 20
Author(s): Gerard Sheehan, Laura Tully, Kevin Kavanagh
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms9040746

Investigation of the Initial Host Response of Naïve Atlantic Salmon (Salmo salar) Inoculated with Paramoeba perurans
Cited by: 1
Author(s): Michelle McCormack, Eugene Dillon, Ian O’Connor, Eugene MacCarthy
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8020295

Proteomic and Transcriptional Profiles of Human Stem Cell-Derived β Cells Following Enteroviral Challenge
Cited by: 6
Author(s): Julius O. Nyalwidhe, Agata Jurczyk, Basanthi Satish, Sambra D. Redick, Natasha Qaisar, Melanie I. Trombly, Pranitha Vangala, Riccardo Racicot, Rita Bortell, David M. Harlan, Dale L. Greiner, Michael A. Brehm, Jerry L. Nadler, Jennifer Wang
Software Mentions: 1
Published: almost 5 years ago

10.3390/microorganisms9040804

Early Post-Prandial Regulation of Protein Expression in the Midgut of Chagas Disease Vector Rhodnius prolixus Highlights New Potential Targets for Vector Control Strategy
Cited by: 7
Author(s): Radouane Ouali, Larissa Rezende Vieira, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms9061144

Revisiting Ehrlichia ruminantium Replication Cycle Using Proteomics: The Host and the Bacterium Perspectives
Cited by: 2
Author(s): Isabel Marcelino, Philippe Holzmüller, Ana Varela Coelho, Gabriel Mazzucchelli, Bernard Fernandez, Nathalie Vachiéry
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms9061258

Differential Exoproteome and Biochemical Characterisation of Neoparamoeba perurans
Cited by: 2
Author(s): Kerrie Ní Dhufaigh, Natasha A. Botwright, Eugene Dillon, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8121958

Echovirus-30 Infection Alters Host Proteins in Lipid Rafts at the Cerebrospinal Fluid Barrier In Vitro
Cited by: 1
Author(s): Marie Wiatr, Simon Staubach, Ricardo Figueiredo, Carolin Stump-Guthier, Hiroshi Ishikawa, Christian Schwerk, Horst Schroten, Franz‐Georg Hanisch, Henriette Rudolph, Tobias Tenenbaum
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9050993

Host Response of Atlantic Salmon (Salmo salar) Re-Inoculated with Paramoeba perurans
Cited by: 1
Author(s): Michelle McCormack, Anita Talbot, Eugene Dillon, Ian O’Connor, Eugene MacCarthy
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8030413

Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37
Cited by: 9
Author(s): Pierre-Alexander Mücke, Sandra Maaß, Thomas P. Kohler, Sven Hammerschmidt, Dörte Becher
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms7120584

Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials
Cited by: 33
Author(s): Anna Hiltunen, Kirsi Savijoki, Tuula A. Nyman, Ilkka T. Miettinen, Petri Ihalainen, Jouko Peltonen, Adyary Fallarero
Software Mentions: 1
Published: about 5 years ago

10.1186/s13229-020-00366-x

Exosomes derived from mesenchymal stem cells improved core symptoms of genetically modified mouse model of autism Shank3B
Cited by: 23
Author(s): Nisim Perets, Oded Oron, Shay Herman, Evan Elliott, Daniel Offen
Software Mentions: 1
Published: over 4 years ago

10.1186/s13229-020-00385-8

Targeting of δ-catenin to postsynaptic sites through interaction with the Shank3 N-terminus
Cited by: 12
Author(s): Fatemeh Hassani Nia, Daniel Woike, Victoria Martens, Malte Klüssendorf, Hans-Hinrich Hönck, Sönke Harder, Hans‐Jürgen Kreienkamp
Software Mentions: 1
Published: about 4 years ago

10.1093/molbev/msy160

Xenacoelomorph Neuropeptidomes Reveal a Major Expansion of Neuropeptide Systems during Early Bilaterian Evolution
Cited by: 27
Author(s): Daniel Thiel, Mirita Franz‐Wachtel, Felipe Aguilera, Andreas Hejnol
Software Mentions: 1
Published: over 6 years ago

10.1039/c6mb00290k

Mastitomics, the integrated omics of bovine milk in an experimental model of Streptococcus uberis mastitis: 2. Label-free relative quantitative proteomics
Cited by: 42
Author(s): Manikhandan Mudaliar, Riccardo Tassi, Funmilola Clara Thomas, Tom N. McNeilly, Stefan Weidt, Marκ McLaughlin, David Gordon Wilson, Richard Burchmore, Paweł Herzyk, P.D. Eckersall, Ruth N. Zadoks
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13041-021-00754-1

Enhanced contextual fear memory in peroxiredoxin 6 knockout mice is associated with hyperactivation of MAPK signaling pathway
Cited by: 10
Author(s): Sarayut Phasuk, Tanita Pairojana, Pavithra Suresh, Chee-Hing Yang, Sittiruk Roytrakul, Shangyu Huang, Chien‐Chang Chen, Narawut Pakaprot, Supin Chompoopong, Sutisa Nudmamud-Thanoi, Ingrid Y. Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/s13041-021-00783-w

FMRP attenuates activity dependent modifications in the mitochondrial proteome
Cited by: 7
Author(s): Pernille Bülow, Stephanie A. Zlatic, Peter Wenner, Gary J. Bassell, Víctor Faúndez
Software Mentions: 1
Published: over 3 years ago

10.1186/1476-4598-13-24

ADAM17 mediates OSCC development in an orthotopic murine model
Cited by: 15
Author(s): Fernando Moreira Simabuco, Rebeca Kawahara, Sami Yokoo, Daniela Campos Granato, Lucas Miguel, Michelle Agostini, Annelize Zambon Barbosa Aragão, Romênia R. Domingues, Isadora Luana Flores, Carolina Carneiro Soares Macedo, Ricardo D. Coletta, Edgard Graner, Adriana Franco Paes Leme
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12943-018-0905-y

Structure-based assessment and network analysis of targeting 14-3-3 proteins in prostate cancer
Cited by: 5
Author(s): Alex Root, Azadeh Beizaei, H. Alexander Ebhardt
Software Mentions: 1
Published: about 6 years ago

10.1186/s12943-014-0280-2

OTUB1 de-ubiquitinating enzyme promotes prostate cancer cell invasion in vitro and tumorigenesis in vivo
Cited by: 48
Author(s): Diego Iglesias-Gato, Yin-Choy Chuan, Ning Jiang, Craig K. Svensson, Jing Bao, Indranil Paul, Lars Egevad, Benedikt M. Kessler, Pernilla Wikström, Yuanjie Niu, Amílcar Flores-Morales
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.molcel.2018.04.008

Polε Instability Drives Replication Stress, Abnormal Development, and Tumorigenesis
Cited by: 65
Author(s): Roberto Bellelli, Valérie Borel, Clare V. Logan, Jennifer M. Svendsen, Danielle E. Cox, Emma Nye, Kay Metcalfe, Susan O’Çonnell, Gordon Stamp, Helen Flynn, Ambrosius P. Snijders, François Lassailly, Andrew P. Jackson, Simon J. Boulton
Software Mentions: 1
Published: over 6 years ago

10.1016/j.molcel.2017.01.003

Serine ADP-Ribosylation Depends on HPF1
Cited by: 235
Author(s): Juán José Bonfiglio, Pietro Fontana, Qi Zhang, Thomas Colby, Ian Gibbs-Seymour, Ilian Atanassov, Edward Bartlett, Roko Žaja, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: over 7 years ago

10.1016/j.molcel.2020.05.035

DDI2 Is a Ubiquitin-Directed Endoprotease Responsible for Cleavage of Transcription Factor NRF1
Cited by: 37
Author(s): A. Barbara Dirac-Svejstrup, Jane Walker, Peter Faull, Vesela Encheva, Vyacheslav Akimov, Michele Puglia, David N. Perkins, Sandra Kümper, Suchete S. Hunjan, Blagoy Blagoev, Ambrosius P. Snijders, David J. Powell, Jesper Q. Svejstrup
Software Mentions: 1
Published: over 4 years ago

10.1007/s11010-019-03593-w

A key metabolic integrator, coenzyme A, modulates the activity of peroxiredoxin 5 via covalent modification
Cited by: 20
Author(s): Jovana Baković, Bess Yi Kun Yu, Daniel Silva, Sew Peak Chew, Sang Eun Kim, Seungjoon Ahn, Laura Palmer, Lujain Aloum, Giacomo Stanzani, О. М. Маланчук, Michael R. Duchen, Mervyn Singer, Valeriy Filonenko, Tae‐Hoon Lee, Mark Skehel, Ivan Gout
Software Mentions: 1
Published: over 5 years ago

10.1007/s11010-019-03559-y

Cytoplasmic SIRT1 inhibits cell migration and invasion by impeding epithelial–mesenchymal transition in ovarian carcinoma
Cited by: 16
Author(s): Tong Yang, Ru Zhou, Shentong Yu, Shu‐Hong Yu, Zhuqing Cui, Peizhen Hu, Jinsong Liu, Qing Qiao, Jing Zhang
Software Mentions: 1
Published: over 5 years ago

10.1128/MCB.00248-19

Omomyc Reveals New Mechanisms To Inhibit the MYC Oncogene
Cited by: 40
Author(s): Mark Demma, Claudio Mapelli, Angie Sun, Smaranda Bodea, Benjamin Ruprecht, Sarah Javaid, Derek Wiswell, Eric S. Muise, Shiying Chen, John Zelina, Federica Orvieto, Alessia Santoprete, Simona Altezza, Federica Tucci, Enrique Escandón, Brian E. Hall, Kallol Ray, Abbas M. Walji, Jennifer O’Neil
Software Mentions: 1
Published: about 5 years ago

10.1128/MCB.00775-15

Sorbs1 and -2 Interact with CrkL and Are Required for Acetylcholine Receptor Cluster Formation
Cited by: 28
Author(s): Peter T. Hallock, Sherry Chin, Steven P. Blais, Thomas A. Neubert, David J. Glass
Software Mentions: 1
Published: almost 9 years ago

10.1074/mcp.RA120.002301

Interspecies Differences in Proteome Turnover Kinetics Are Correlated With Life Spans and Energetic Demands
Cited by: 33
Author(s): Kyle Swovick, Denis Firsanov, Kevin Welle, Jennifer R. Hryhorenko, John Pierce Wise, Craig George, Todd Sformo, Andrei Seluanov, Vera Gorbunova, Sina Ghaemmaghami
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.O116.065136

Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics
Cited by: 157
Author(s): Nils A. Kulak, Philipp Geyer, Matthias Mann
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.TIR118.000900

Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer
Cited by: 524
Author(s): Florian Meier, Andreas David Brunner, Scarlet Koch, Heiner Koch, Markus Lubeck, Michael Krause, Niels Goedecke, Jens Decker, Thomas Kosinski, Melvin A. Park, Nicolai Bache, Ole Hoerning, Jürgen Cox, Oliver Räther, Matthias Mann
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA120.002152

Novel Proteome Extraction Method Illustrates a Conserved Immunological Signature of MSI-H Colorectal Tumors
Cited by: 0
Author(s): E Vainer, Juliane Kania-Almog, Ghadeer Zatara, Yishai Levin, Gilad W. Vainer
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.M116.064261

Proteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses
Cited by: 25
Author(s): Marijke Koppenol-Raab, Virginie Sjoelund, Nathan P. Manes, Rachel A. Gottschalk, Bhaskar Dutta, Zachary Benet, Iain D. C. Fraser, Aleksandra Nita‐Lazar
Software Mentions: 1
Published: over 7 years ago

10.1016/j.mcpro.2021.100082

A New Parallel High-Pressure Packing System Enables Rapid Multiplexed Production of Capillary Columns
Cited by: 11
Author(s): Johannes B. Müller-Reif, Fynn M. Hansen, Lisa Schweizer, Peter V. Treit, Philipp Geyer, Matthias Mann
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA119.001546

The Secretome Profiling of a Pediatric Airway Epithelium Infected with hRSV Identified Aberrant Apical/Basolateral Trafficking and Novel Immune Modulating (CXCL6, CXCL16, CSF3) and Antiviral (CEACAM1) Proteins
Cited by: 15
Author(s): Olivier Touzelet, Lindsay Broadbent, Stuart D. Armstrong, Waleed Aljabr, Elaine Cloutman-Green, Ultan F. Power, Julian A. Hiscox
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.TIR119.001560

Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples
Cited by: 66
Author(s): Samuel Weng, Fatih Demir, Enes K. Ergin, Sabrina Dirnberger, Anuli Uzozie, Domenic Tuscher, Lorenz Nierves, Janice Tsui, Pitter F. Huesgen, Philipp F. Lange
Software Mentions: 1
Published: about 5 years ago

10.1074/mcp.TIR117.000383

High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome
Cited by: 146
Author(s): Chloé Chong, Fabio Marino, HuiSong Pak, Julien Racle, Roy Thomas Daniel, Markus Müller, David Gfeller, George Coukos, Michal Bassani-Sternberg
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.M114.047407

The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics *
Cited by: 142
Author(s): Scarlet Beck, Annette Michalski, Oliver Raether, Markus Lubeck, Stephanie Kaspar, Niels Goedecke, Carsten Baessmann, Daniel Hornburg, Florian Meier, Igor Paron, Nils A. Kulak, Juergen Cox, Matthias Mann
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.RA118.000652

Doxorubicin-induced DNA Damage Causes Extensive Ubiquitination of Ribosomal Proteins Associated with a Decrease in Protein Translation*
Cited by: 25
Author(s): Vincentius A. Halim, Iraia García-Santisteban, Daniël O. Warmerdam, Bram van den Broek, Albert J. R. Heck, Shabaz Mohammed, René H. Medema
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA120.002123

The Neuroproteomic Basis of Enhanced Perception and Processing of Brood Signals That Trigger Increased Reproductive Investment in Honeybee (Apis mellifera) Workers
Cited by: 9
Author(s): Xufeng Zhang, Han Hu, Bin Han, Qiaohong Wei, Lifeng Meng, Fan Wu, Fang Yu, Feng Mao, Chuan Ma, Olav Rueppell, Jianke Li
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.RA120.002231

Slight Deuterium Enrichment in Water Acts as an Antioxidant: Is Deuterium a Cell Growth Regulator?
Cited by: 9
Author(s): Xuepei Zhang, Jin Wang, Roman A. Zubarev
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.RA120.002370

Proteomic Identification of Coxiella burnetii Effector Proteins Targeted to the Host Cell Mitochondria During Infection
Cited by: 9
Author(s): Laura F. Fielden, Nichollas E. Scott, Catherine S Palmer, Chen Ai Khoo, Hayley J Newton, Diana Stojanovski
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA118.001043

Whole Proteome Profiling of N-Myristoyltransferase Activity and Inhibition Using Sortase A
Cited by: 19
Author(s): Andrea Goya Grocin, Remigiusz A. Serwa, Julia Morales-Sanfrutos, Markus Ritzefeld, Edward W. Tate
Software Mentions: 1
Published: almost 6 years ago

10.1074/mcp.RA119.001777

PolySTest: Robust Statistical Testing of Proteomics Data with Missing Values Improves Detection of Biologically Relevant Features
Cited by: 18
Author(s): Veit Schwämmle, Christina E Hagensen, Adelina Rogowska-Wrzesińska, Ole N. Jensen
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA118.000767

Rapid Remodeling of the Host Epithelial Cell Proteome by the Listeriolysin O (LLO) Pore-forming Toxin
Cited by: 24
Author(s): Julien Karim Malet, Francis Impens, Frédéric A. Carvalho, Mélanie Hamon, Pascale Cossart, David Ribet
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.M116.062539

The Primary Effect on the Proteome of ARID1A-mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post-transcriptional Level
Cited by: 21
Author(s): Aaron R. Goldman, Benjamin G. Bitler, Zachary T. Schug, José R. Conejo-Garcia, Rugang Zhang, David W. Speicher
Software Mentions: 1
Published: about 8 years ago

10.1074/mcp.M116.061986

Quantitative Protein Profiling of Chlamydia trachomatis Growth Forms Reveals Defense Strategies Against Tryptophan Starvation
Cited by: 25
Author(s): Ole Østergaard, Frank Follmann, Anja Olsen, Niels H. H. Heegaard, Peter Andersen, Ida Rosenkrands
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.M116.062448

Norovirus-Mediated Modification of the Translational Landscape via Virus and Host-Induced Cleavage of Translation Initiation Factors
Cited by: 40
Author(s): Edward Emmott, Frédéric Sorgeloos, Sarah Caddy, Surender Vashist, Stanislav V. Sosnovtsev, Richard E. Lloyd, Kate J Heesom, Nicolas Locker, Ian Goodfellow
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.RA119.001878

Quantitative Proteomics of Human Heart Samples Collected In Vivo Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation
Cited by: 20
Author(s): Nora Linscheid, Peter Noe Poulsen, Ida Dalgaard Pedersen, Emilie Gregers, Jesper Hastrup Svendsen, Morten S. Olesen, Jesper V. Olsen, Mario Delmar, Alicia Lundby
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA119.001876

Identification of Tumor Antigens in the HLA Peptidome of Patient-derived Xenograft Tumors in Mouse
Cited by: 12
Author(s): Nataly Mancette Rijensky, Netta R. Shraga, Eilon Barnea, Nir Peled, Eli Rosenbaum, Aron Popovtzer, Solomon M. Stemmer, Alejandro Livoff, Mark Shlapobersky, Neta Moskovits, Dafna Perry, Eitan Rubin, Itzhak Haviv, Arie Admon
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA120.002164

Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing
Cited by: 74
Author(s): Jana Zecha, Chien-Yun Lee, Florian Bayer, Chen Meng, Vincent Grass, Johannes Zerweck, Karsten Schnatbaum, Thomas Michler, Andreas Pichlmair, Christina Ludwig, Bernhard Küster
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.M116.061267

Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells
Cited by: 5
Author(s): Jenny Worthington, Georgia Spain, John F. Timms
Software Mentions: 1
Published: over 7 years ago

10.1074/mcp.M112.024679

A SILAC-based Approach Identifies Substrates of Caspase-dependent Cleavage upon TRAIL-induced Apoptosis
Cited by: 26
Author(s): Gabriele Stoehr, Christoph Schaab, Johannes Graumann, Matthias Mann
Software Mentions: 1
Published: over 11 years ago

10.1016/j.mcpro.2021.100101

Normothermic Ex-vivo Kidney Perfusion in a Porcine Auto-Transplantation Model Preserves the Expression of Key Mitochondrial Proteins: An Unbiased Proteomics Analysis
Cited by: 6
Author(s): Caitríona M. McEvoy, Sergi Clotet-Freixas, Tomáš Tokár, Chiara Pastrello, Shelby Reid, Ihor Batruch, Adrien A. E. RaoPeters, J. Moritz Kaths, Peter Urbanellis, Sofia Farkona, Julie A.D. Van, Bradley L. Urquhart, Rohan John, Igor Jurišica, Lisa A. Robinson, Markus Selzner, Ana Konvalinka
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.TIR119.001720

MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics
Cited by: 106
Author(s): Nikita Prianichnikov, Heiner Koch, Scarlet Koch, Markus Lubeck, Raphael Heilig, Sven Brehmer, Román Fischer, Jürgen Cox
Software Mentions: 1
Published: over 4 years ago

10.1016/j.mcpro.2021.100134

Proteomic Signature of Host Response to SARS-CoV-2 Infection in the Nasopharynx
Cited by: 18
Author(s): Patrick M. Vanderboom, Dong-Gi Mun, Anil K. Madugundu, Kiran K. Mangalaparthi, Mayank Saraswat, Kishore Garapati, Rana Chakraborty, Hideki Ebihara, Jie Sun, Akhilesh Pandey
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA119.001455

Anticancer Effect of Deuterium Depleted Water - Redox Disbalance Leads to Oxidative Stress
Cited by: 29
Author(s): Xuepei Zhang, Massimiliano Gaetani, Alexey Chernobrovkin, Roman A. Zubarev
Software Mentions: 1
Published: almost 5 years ago

10.1074/mcp.RA120.002320

The Complexity and Dynamics of the Tissue Glycoproteome Associated With Prostate Cancer Progression
Cited by: 35
Author(s): Rebeca Kawahara, Saulo Recuero, Miguel Srougi, Kátia R. M. Leite, Morten Thaysen‐Andersen, Giuseppe Palmisano
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.O116.065219

A Proteomic Approach to Analyze the Aspirin-mediated Lysine Acetylome
Cited by: 44
Author(s): Michael H. Tatham, Christian Callebaut, Paul Scullion, Ross Wilkie, Nicholas J. Westwood, Lesley A. Stark, Ronald T. Hay
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.TIR117.000152

Converging Small Ubiquitin-like Modifier (SUMO) and Ubiquitin Signaling: Improved Methodology Identifies Co-modified Target Proteins
Cited by: 21
Author(s): Sabine A. G. Cuijpers, Edwin Willemstein, Alfred C.O. Vertegaal
Software Mentions: 1
Published: almost 7 years ago

10.1074/mcp.M115.054510

Pathology Tissue-quantitative Mass Spectrometry Analysis to Profile Histone Post-translational Modification Patterns in Patient Samples
Cited by: 39
Author(s): Roberta Noberini, Andrea Uggetti, Giancarlo Pruneri, Saverio Minucci, Tiziana Bonaldi
Software Mentions: 1
Published: over 8 years ago

10.1016/j.mcpro.2021.100131

Proteome Landscape of Epithelial-to-Mesenchymal Transition (EMT) of Retinal Pigment Epithelium Shares Commonalities With Malignancy-Associated EMT
Cited by: 12
Author(s): Srinivasa R. Sripathi, Ming Hu, Ravi Chakra Turaga, Joseph L. Mertz, Melissa M. Liu, Jun Wan, Julien Maruotti, Karl Wahlin, Cynthia Berlinicke, Jiang Qian, Donald J. Zack
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA120.002059

The Aspergillus fumigatus Secretome Alters the Proteome of Pseudomonas aeruginosa to Stimulate Bacterial Growth: Implications for Co-infection
Cited by: 20
Author(s): Anatte Margalit, James C. Carolan, David Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA118.000739

Decreased Antibiotic Susceptibility Driven by Global Remodeling of the Klebsiella pneumoniae Proteome
Cited by: 11
Author(s): Sarah L. Keasey, Moo-Jin Suh, Sudipto Das, Candace D. Blancett, Xiankun Zeng, Þorkell Andrésson, Miao Sun, Robert G. Ulrich
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.RA120.002046

Radiosensitization by Kinase Inhibition Revealed by Phosphoproteomic Analysis of Pancreatic Cancer Cells
Cited by: 5
Author(s): Svenja Wiechmann, Elena Saupp, Daniela Schilling, Stephanie Heinzlmeir, Günter Schneider, Roland M. Schmid, Stephanie E. Combs, Bernhard Küster, Sophie Dobiasch
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.RA117.000574

Cross-species Comparison of Proteome Turnover Kinetics
Cited by: 40
Author(s): Kyle Swovick, Kevin Welle, Jennifer R. Hryhorenko, Andrei Seluanov, Vera Gorbunova, Sina Ghaemmaghami
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA120.002159

Multisample Mass Spectrometry-Based Approach for Discovering Injury Markers in Chronic Kidney Disease
Cited by: 12
Author(s): Ji Eun Kim, Dohyun Han, Jin-Yeon Jeong, Jiwon Moon, Hyun Kyung Moon, Sunhwa Lee, Yong Chul Kim, Kyung Don Yoo, Jae Woo Lee, Yon Su Kim, Young Joo Kwon, Yon Su Kim, Seung Hee Yang
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA119.001336

Sucrose-induced Receptor Kinase 1 is Modulated by an Interacting Kinase with Short Extracellular Domain*
Cited by: 19
Author(s): Xu Wu, Liang‐Cui Chu, Lin Xi, Heidi Pertl-Obermeyer, Zhi Li, Kamil Sklodowski, Clara Sánchez-Rodríguez, Gerhard Obermeyer, Waltraud X. Schulze
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.TIR118.000853

A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics
Cited by: 243
Author(s): Nicolai Bache, Philipp E. Geyer, Dorte B. Bekker-Jensen, Ole Hoerning, Lasse Gaarde Falkenby, Peter V. Treit, Sophia Doll, Igor Paron, Johannes B. Müller-Reif, Florian Meier, Jesper V. Olsen, Ole Vorm, Matthias Mann
Software Mentions: 1
Published: about 6 years ago

10.1074/mcp.RA118.000705

Identification of Novel Physiological Substrates of Mycobacterium bovis BCG Protein Kinase G (PknG) by Label-free Quantitative Phosphoproteomics
Cited by: 20
Author(s): Kehilwe C. Nakedi, Bridget Calder, Mousumi Banerjee, Alexander D. Giddey, Andrew J. M. Nel, Shaun Garnett, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 1
Published: over 6 years ago

10.1074/mcp.RA120.002232

In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1
Cited by: 18
Author(s): Nadine Prust, Saar van der Laarse, Henk W. P. van den Toorn, Nina M. van Sorge, Simone Lemeer
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA119.001886

The Challenge of Classifying Metastatic Cell Properties by Molecular Profiling Exemplified with Cutaneous Melanoma Cells and Their Cerebral Metastasis from Patient Derived Mouse Xenografts
Cited by: 12
Author(s): Benjamin Neuditschko, Lukas Janker, Laura Niederstaetter, Julia Brunmair, Katharina Krivanek, Sivan Izraely, Orit Sagi‐Assif, Tsipi Meshel, Bernhard K. Keppler, Giorgia Del Favero, Christopher Gerner
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA119.001912

An Interaction Network of RNA-Binding Proteins Involved in Drosophila Oogenesis
Cited by: 12
Author(s): Prashali Bansal, Johannes Madlung, Kristina Schaaf, Boris Maček, Fulvia Bono
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.RA120.002384

Proteomic Analyses Identify Differentially Expressed Proteins and Pathways Between Low-Risk and High-Risk Subtypes of Early-Stage Lung Adenocarcinoma and Their Prognostic Impacts
Cited by: 8
Author(s): Juntuo Zhou, Bing Liu, Zhongwu Li, Yang Li, Xi Chen, Yuanyuan Ma, Yan Shi, Xin Yang, Liang Zhong, Nan Wu
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.M116.060582

Coordination of Metabolism and Virulence Factors Expression of Extraintestinal Pathogenic Escherichia coli Purified from Blood Cultures of Patients with Sepsis
Cited by: 18
Author(s): Veronika Kuchařová Pettersen, Knut Anders Mosevoll, Paul Christoffer Lindemann, Harald G. Wiker
Software Mentions: 1
Published: about 8 years ago

10.1074/mcp.M115.050245

Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles
Cited by: 71
Author(s): Sally J. Deeb, Stefka Tyanova, Michael Hummel, Marc Schmidt-Supprian, Juergen Cox, Matthias Mann
Software Mentions: 1
Published: about 9 years ago

10.1074/mcp.RA118.000958

Mass Spectrometry-based Absolute Quantification of 20S Proteasome Status for Controlled Ex-vivo Expansion of Human Adipose-derived Mesenchymal Stromal/Stem Cells
Cited by: 17
Author(s): Thomas Menneteau, Bertrand Fabre, Luc Garrigues, Alexandre Stella, Dušan Živković, Florence Roux‐Dalvai, Emmanuelle Mouton-Barbosa, Mathilde Beau, Marie-Laure Renoud, François Amalríc, Luc Sensebé, Anne Gonzalez de Peredo, Isabelle Ader, Odile Burlet‐Schiltz, Marie‐Pierre Bousquet
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.TIR120.002129

ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping
Cited by: 21
Author(s): Diana Samodova, Christopher M. Hosfield, Christian N. Cramer, Maria Valeria Giuli, Enrico Cappellini, Giulia Franciosa, Michael Rosenblatt, Christian D. Kelstrup, Jesper V. Olsen
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.RA120.002049

High-dimensional Cytometry (ExCYT) and Mass Spectrometry of Myeloid Infiltrate in Clinically Localized Clear Cell Renal Cell Carcinoma Identifies Novel Potential Myeloid Targets for Immunotherapy
Cited by: 1
Author(s): Debebe Theodros, Benjamin Murter, John-William Sidhom, Thomas R. Nirschl, David Clark, Li Jun Chen, Ada Tam, Richard L. Blosser, Zeyad Schwen, Michael H. Johnson, Phillip M. Pierorazio, Hui Zhang, Sudipto Ganguly, Drew M. Pardoll, Jelani C. Zarif
Software Mentions: 1
Published: about 4 years ago

10.1074/mcp.RA119.001367

The Systemin Signaling Cascade As Derived from Time Course Analyses of the Systemin-responsive Phosphoproteome*
Cited by: 22
Author(s): F. Haj Ahmad, Xu Wu, Annick Stintzi, Andreas Schaller, Waltraud X. Schulze
Software Mentions: 1
Published: over 5 years ago

10.1074/mcp.M116.064428

Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis
Cited by: 24
Author(s): Ivor H. Evans, Susan Kennedy, Ketevan Paliashvili, Tapesh Santra, Maiko Yamaji, Ruth C. Lovering, Gary Britton, Paul Frankel, Walter Kölch, Ian Zachary
Software Mentions: 1
Published: almost 8 years ago

10.1111/mec.15298

Evidence for a role of protein phosphorylation in the maintenance of the cnidarian–algal symbiosis
Cited by: 5
Author(s): Fabia Simona, Huoming Zhang, Christian R. Voolstra
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules26082397

Proteomic and Bioinformatic Investigation of Altered Pathways in Neuroglobin-Deficient Breast Cancer Cells
Cited by: 16
Author(s): Michele Costanzo, Marco Fiocchetti, Paolo Ascenzi, Maria Marino, Marianna Caterino, Margherita Ruoppolo
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules25184071

High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma
Cited by: 10
Author(s): Elisa Maffioli, Zhenze Jiang, Simona Nonnis, Armando Negri, Valentina Romeo, Christopher B. Lietz, Vivian Hook, Giuseppe Ristagno, Giuseppe Baselli, Erik B. Kistler, Federico Aletti, Anthony J. O’Donoghue, Gioacchino Tedeschi
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules26020287

The UFM1 Pathway Impacts HCMV US2-Mediated Degradation of HLA Class I
Cited by: 7
Author(s): A.B.C. Schuren, Ingrid G. J. Boer, Ellen M Bouma, Michael L. van de Weijer, Ana I. Costa, Philipp Hubel, Andreas Pichlmair, Robert Jan Lebbink, Emmanuel J. H. J. Wiertz
Software Mentions: 1
Published: almost 4 years ago

10.3390/molecules26113345

A Multi-Omics Study of Human Testis and Epididymis
Cited by: 4
Author(s): Weimin Zheng, Yang Zhang, Chuanyu Sun, Shengyang Ge, Yimei Tan, Huali Shen, Pengyuan Yang
Software Mentions: 1
Published: over 3 years ago

Projects: cran: Andromeda

Papers Mentioning Andromeda 1,724