10.1128/mSphere.00327-21

Mitochondrial Contact Site and Cristae Organization System and F ₁ F _O -ATP Synthase Crosstalk Is a Fundamental Property of Mitochondrial Cristae
Cited by: 10
Author(s): Lawrence Rudy Cadena, Ondřej Gahura, Brian Panicucci, Alena Zı́ková, Hassan Hashimi
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00149-16

Global Analysis and Comparison of the Transcriptomes and Proteomes of Group A <i>Streptococcus</i> Biofilms
Cited by: 24
Author(s): Jeffrey A. Freiberg, Yoann Le Breton, Bao Tran, Alison Scott, Janette M. Harro, Robert K. Ernst, Young Ah Goo, Emmanuel F. Mongodin, David R. Goodlett, Kevin S. McIver, Mark E. Shirtliff
Software Mentions: 1
Published: almost 10 years ago

10.3389/fendo.2021.568197

Proteomic and Structural Manifestations of Cardiomyopathy in Rat Models of Obesity and Weight Loss
Cited by: 7
Author(s): Arkadiusz Liśkiewicz, Łukasz Marczak, Katarzyna Bogus, Daniela Liśkiewicz, Marta Przybyła, Joanna Lewin–Kowalik
Software Mentions: 1
Published: over 5 years ago

10.1093/molbev/msy160

Xenacoelomorph Neuropeptidomes Reveal a Major Expansion of Neuropeptide Systems during Early Bilaterian Evolution
Cited by: 27
Author(s): Daniel Thiel, Mirita Franz‐Wachtel, Felipe Aguilera, Andreas Hejnol
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00240-18

Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling<i>Bacteroidetes</i>
Cited by: 27
Author(s): Marcel Taillefer, Magnus Ø. Arntzen, Bernard Henrissat, Phillip B. Pope, Johan Larsbrink
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2012.00242

On programmed ribosomal frameshifting: the alternative proteomes
Cited by: 56
Author(s): Robin Ketteler
Software Mentions: 1
Published: almost 15 years ago

10.1186/s13229-020-00385-8

Targeting of δ-catenin to postsynaptic sites through interaction with the Shank3 N-terminus
Cited by: 12
Author(s): Fatemeh Hassani Nia, Daniel Woike, Victoria Martens, Malte Klüssendorf, Hans-Hinrich Hönck, Sönke Harder, Hans‐Jürgen Kreienkamp
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-020-00893-2

Spontaneous regression of micro-metastases following primary tumor excision: a critical role for primary tumor secretome
Cited by: 10
Author(s): Lee Shaashua, Anabel Eckerling, Boaz Israeli, Gali Yanovich, Ella Rosenne, Suzana Fichman-Horn, Ido Ben Zvi, Liat Sorski, Rita Haldar, Ronit Satchi‐Fainaro, Tamar Geiger, Erica K. Sloan, Shamgar Ben‐Eliyahu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2017.01926

Expression of Siglec-E Alters the Proteome of Lipopolysaccharide (LPS)-Activated Macrophages but Does Not Affect LPS-Driven Cytokine Production or Toll-Like Receptor 4 Endocytosis
Cited by: 21
Author(s): Manjula Nagala, Emma McKenzie, Hannah Richards, Ritu Sharma, Sarah Thomson, Pietro Mastroeni, Paul R. Crocker
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2017.01367

‘Hotspots’ of Antigen Presentation Revealed by Human Leukocyte Antigen Ligandomics for Neoantigen Prioritization
Cited by: 72
Author(s): Markus Müller, David Gfeller, George Coukos, Michal Bassani-Sternberg
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2020.00887

Airway Exosomes Released During Influenza Virus Infection Serve as a Key Component of the Antiviral Innate Immune Response
Cited by: 29
Author(s): James G. Bedford, Giuseppe Infusini, Laura F. Dagley, Fernando Villalón-Letelier, Ming Z. M. Zheng, Vicki Bennett-Wood, Patrick C. Reading, Linda M. Wakim
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.01937

IgG-Independent Co-aggregation of FcεRI and FcγRIIB Results in LYN- and SHIP1-Dependent Tyrosine Phosphorylation of FcγRIIB in Murine Bone Marrow-Derived Mast Cells
Cited by: 10
Author(s): Mathias Gast, Christian Preisinger, Falk Nimmerjahn, Michael Huber
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00314-18

<i>Salmonella</i> Proteomic Profiling during Infection Distinguishes the Intracellular Environment of Host Cells
Cited by: 20
Author(s): Zezhou Li, Yanhua Liu, Jiaqi Fu, Buyu Zhang, Sen Cheng, Mei Wu, Zhen Wang, Jiezhang Jiang, Cheng Chang, Xiaoyun Liu
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.00226

Light-Controlled Affinity Purification of Protein Complexes Exemplified by the Resting ZAP70 Interactome
Cited by: 11
Author(s): Maximilian Hörner, Julian Eble, O. Sascha Yousefi, Jennifer Schwarz, Bettina Warscheid, Wilfried Weber, Wolfgang W. A. Schamel
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.00620

Cutting an NKG2D Ligand Short: Cellular Processing of the Peculiar Human NKG2D Ligand ULBP4
Cited by: 16
Author(s): Tobias Zöller, Mareike Wittenbrink, Meike Hoffmeister, Alexander Steinle
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2019.02921

Molecular Landscape of Anti-Drug Antibodies Reveals the Mechanism of the Immune Response Following Treatment With TNFα Antagonists
Cited by: 37
Author(s): Anna Vaisman-Mentesh, Shai Rosenstein, Miri Yavzori, Yael Dror, Ella Fudim, Bella Ungar, Uri Kopylov, Orit Picard, Aya Kigel, Shomron Ben–Horin, Itai Benhar, Yariv Wine
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2020.596103

Binding of Macrophage Receptor MARCO, LDL, and LDLR to Disease-Associated Crystalline Structures
Cited by: 9
Author(s): Anika Alberts, Annika Klingberg, Leonie Hoffmeister, Anne Kathrin Wessig, Korbinian Brand, Andreas Pich, Konstantin Neumann
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13229-020-00366-x

Exosomes derived from mesenchymal stem cells improved core symptoms of genetically modified mouse model of autism Shank3B
Cited by: 23
Author(s): Nisim Perets, Oded Oron, Shay Herman, Evan Elliott, Daniel Offen
Software Mentions: 1
Published: about 6 years ago

10.1111/jpi.12713

Mass‐spectrometry analysis of the human pineal proteome during night and day and in autism
Cited by: 3
Author(s): Guillaume Dumas, Hany Goubran‐Botros, Mariette Matondo, Cécile Pagan, Cyril Boulègue, Thibault Chaze, Julia Chamot‐Rooke, Erik Maronde, Thomas Bourgeron
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.01648

Endoplasmic Reticulum Associated Aminopeptidase 2 (ERAP2) Is Released in the Secretome of Activated MDMs and Reduces in vitro HIV-1 Infection
Cited by: 21
Author(s): Irma Saulle, Salomè V. Ibba, Enrica Torretta, Cecilia Vittori, Claudio Fenizia, Federica Piancone, Davide Minisci, Elisa Lori, Daria Trabattoni, Cecilia Gelfi, Mario Clerici, Mara Biasin
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-13-S16-S12

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data
Cited by: 493
Author(s): Juergen Cox, Matthias Mann
Software Mentions: 1
Published: almost 14 years ago

10.3390/microorganisms7120584

Structural and Functional Dynamics of Staphylococcus aureus Biofilms and Biofilm Matrix Proteins on Different Clinical Materials
Cited by: 33
Author(s): Anna Hiltunen, Kirsi Savijoki, Tuula A. Nyman, Ilkka T. Miettinen, Petri Ihalainen, Jouko Peltonen, Adyary Fallarero
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2018.01142

Foot-and-Mouth Disease Virus Counteracts on Internal Ribosome Entry Site Suppression by G3BP1 and Inhibits G3BP1-Mediated Stress Granule Assembly via Post-Translational Mechanisms
Cited by: 35
Author(s): Xu Ye, Ting Pan, Dan Wang, Liurong Fang, Jun Ma, Xinyu Zhu, Yanbin Shi, Keshan Zhang, Haixue Zheng, Huanchun Chen, Kui Li, Shaobo Xiao
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2020.01686

Antimicrobial Peptide Induced-Stress Renders Staphylococcus aureus Susceptible to Toxic Nucleoside Analogs
Cited by: 6
Author(s): Alexandro Rodríguez‐Rojas, Arpita Nath, Baydaa El Shazely, Greta Santi, Joshua Jay Kim, Christoph Weise, Benno Kuropka, Jens Rolff
Software Mentions: 1
Published: about 6 years ago

10.1128/mSystems.01129-20

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Candida albicans
Cited by: 8
Author(s): Hailin Zheng, Nana Song, Xiaowei Zhou, Huan Mei, Dongmei Li, Xiaofang Li, Weida Liu
Software Mentions: 1
Published: over 5 years ago

10.1080/15548627.2020.1820778

Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90.1 and ROF1
Cited by: 55
Author(s): Venkatesh P. Thirumalaikumar, Michał Górka, Karina Schulz, Céline Masclaux-Daubresse, Arun Sampathkumar, Aleksandra Skirycz, R.D. Vierstra, Salma Balazadeh
Software Mentions: 1
Published: about 6 years ago

10.1186/s40478-019-0806-3

Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy
Cited by: 16
Author(s): Wiebke A. Rehorst, Maximilian P. Thelen, Hendrik Nolte, Clara Türk, Sebahattin Çırak, Jonathan M. Peterson, G. William Wong, Brunhilde Wirth, Marcus Krüger, Dominic Winter, Min Jeong Kye
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.01832

A Phase Ib Study of the Combination of Personalized Autologous Dendritic Cell Vaccine, Aspirin, and Standard of Care Adjuvant Chemotherapy Followed by Nivolumab for Resected Pancreatic Adenocarcinoma—A Proof of Antigen Discovery Feasibility in Three Patients
Cited by: 51
Author(s): Michal Bassani-Sternberg, Antonia Digklia, Florian Huber, Dorothea Wagner, Christine Sempoux, Brian J. Stevenson, Anne‐Christine Thierry, Justine Michaux, HuiSong Pak, Julien Racle, Caroline Boudousquié, Klara Balint, George Coukos, David Gfeller, Silvia Martin Lluesma, Alexandre Harari, Nicolas Demartines, Lana E. Kandalaft
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2020.604075

Tolerogenic Effect Elicited by Protein Fraction Derived From Different Formulas for Dietary Treatment of Cow’s Milk Allergy in Human Cells
Cited by: 18
Author(s): Lorella Paparo, Gianluca Picariello, Cristina Bruno, Laura Pisapia, Valentina Canale, Antonietta Sarracino, Rita Nocerino, Laura R. Carucci, Linda Cosenza, Tommaso Cozzolino, Roberto Berni Canani
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-020-00943-4

Transmission of ALS pathogenesis by the cerebrospinal fluid
Cited by: 26
Author(s): Pooja-Shree Mishra, Hejer Boutej, Geneviève Soucy, Christine Bareil, Sunil Kumar, Vincent Picher-Martel, Nicolas Dupré, Jasna Križ, Jean‐Pierre Julien
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.711517

Duck Tembusu Virus Infection Promotes the Expression of Duck Interferon-Induced Protein 35 to Counteract RIG-I Antiviral Signaling in Duck Embryo Fibroblasts
Cited by: 7
Author(s): Peng Zhou, Lei Ma, Zaixiao Rao, Yaqian Li, Huijun Zheng, Qigai He, Rui Luo
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.00694

Sex as a Determinant of Responses to a Coronary Artery Disease Self-Antigen Identified by Immune-Peptidomics
Cited by: 3
Author(s): Wai Man Lio, Bojan Cercek, Juliana Yano, Wei Yang, Jonathan Ghermezi, Xiaoning Zhao, Jianchang Zhou, Bo Zhou, Michael R. Freeman, Kuang‐Yuh Chyu, Prediman K. Shah, Paul C. Dimayuga
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.00405

Differential Phagocytic Properties of CD45low Microglia and CD45high Brain Mononuclear Phagocytes—Activation and Age-Related Effects
Cited by: 80
Author(s): Srikant Rangaraju, Syed Ali Raza, Noel Xiang'An Li, Ranjita Betarbet, Eric B. Dammer, Duc M. Duong, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms8030413

Proteomic Adaptation of Streptococcus pneumoniae to the Human Antimicrobial Peptide LL-37
Cited by: 9
Author(s): Pierre-Alexander Mücke, Sandra Maaß, Thomas P. Kohler, Sven Hammerschmidt, Dörte Becher
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.00097

New Insights for RANKL as a Proinflammatory Modulator in Modeled Inflammatory Arthritis
Cited by: 30
Author(s): Maria Papadaki, Vagelis Rinotas, Foteini Violitzi, Trias Thireou, George Panayotou, Martina Samiotaki, Eleni Douni
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00549-21

Proteome Dynamics during Antibiotic Persistence and Resuscitation
Cited by: 4
Author(s): Maja Šemanjski, Fabio Lino Gratani, Till Englert, Payal Nashier, Viktor Beke, Nicolas C. Nalpas, Elsa Germain, Shilpa Elizabeth George, Christiane Wolz, Kenn Gerdes, Boris Maček
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.597818

Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium
Cited by: 14
Author(s): С. Н. Гаврилов, Д. Г. Заварзина, Ivan M. Elizarov, Т. V. Tikhonova, Н. И. Дергоусова, Vladimir O. Popov, Jonathan R. Lloyd, David Knight, Mohamed Y. El‐Naggar, Sahand Pirbadian, Kar Man Leung, Frank T. Robb, Maksim Zakhartsev, Orianna Bretschger, E. A. Bonch-Osmolovskaya
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01215

Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome
Cited by: 48
Author(s): Daniel Poppleton, Magalie Duchateau, Véronique Hourdel, Mariette Matondo, Jennifer Flechsler, Andreas Klingl, Christophe Beloin, Simonetta Gribaldo
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02304

Francisella tularensis subsp. holarctica Releases Differentially Loaded Outer Membrane Vesicles Under Various Stress Conditions
Cited by: 27
Author(s): Jana Klimentová, Ivona Pávková, Lenka Horcickova, Jan Bavlovič, Olga Kofroňová, Oldřich Benada, Jiřı́ Stulı́k
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.01174

Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion
Cited by: 20
Author(s): Tobias Busche, Konstantinos C. Tsolis, Joachim Koepff, Yuriy Rebets, Christian Rückert, Mohamed Belal Hamed, Arne Bleidt, Wolfgang Wiechert, Maria Lopatniuk, Yousra Ahmed, Jozef Anné, Spyridoula Karamanou, Marco Oldiges, Jörn Kalinowski, Andriy Luzhetskyy, Anastassios Economou
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.02674

Comprehensive Proteomic Analysis of Lysine Acetylation in the Foodborne Pathogen Trichinella spiralis
Cited by: 14
Author(s): Yong Yang, Mingwei Tong, Xue Bai, Xiaolei Liu, Xuepeng Cai, Xuenong Luo, Peihao Zhang, Wei Cai, Isabelle Vallée, Yonghua Zhou, Mingyuan Liu
Software Mentions: 1
Published: over 8 years ago

10.1007/s00439-021-02345-5

ASL expression in ALDH1A1+ neurons in the substantia nigra metabolically contributes to neurodegenerative phenotype
Cited by: 6
Author(s): Shaul Lerner, Raya Eilam, Lital N. Adler, Julien Baruteau, Topaz Kreiser, Michael Tsoory, Alexander Brandis, Tevie Mehlman, Mina Ryten, Juan A. Botía, Sonia García-Ruiz, Alejandro Cisterna Garcia, Carlo Dionisi‐Vici, Giusy Ranucci, Marco Spada, Ram Mazkereth, Robert McCarter, Rima Izem, Thomas J Balmat, Rachel L. Richesson, Ehud Gazit, Sandesh C.S. Nagamani, Ayelet Erez
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2015.00103

Characterization of the E. coli proteome and its modifications during growth and ethanol stress
Cited by: 107
Author(s): Boumediene Soufi, Karsten Krug, Andreas Harst, Boris Maček
Software Mentions: 1
Published: over 11 years ago

10.1186/s40246-014-0022-y

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis
Cited by: 16
Author(s): Konstantinos Sousounis, Rital B. Bhavsar, Mario Looso, Marcus Krüger, Jessica L. Beebe, Thomas Braun, Panagiotis A. Tsonis
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2021.664061

Comparative Proteomics Reveals the Anaerobic Lifestyle of Meat-Spoiling Pseudomonas Species
Cited by: 19
Author(s): Sandra Kolbeck, Miriam Abele, Maik Hilgarth, Rudi F. Vogel
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-020-00769-x

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
Cited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2016.01049

Proteomic Analysis of the Hydrogen and Carbon Monoxide Metabolism of Methanothermobacter marburgensis
Cited by: 25
Author(s): Martijn Diender, Ricardo Aparecido Pereira, Hans Wessels, Alfons Johannes Maria Stams, Diana Z. Sousa
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.604034

Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome Information
Cited by: 4
Author(s): Julian Droste, Christian Rückert, Jörn Kalinowski, Mohamed Belal Hamed, Jozef Anné, Kenneth Simoens, Kristel Bernaerts, Anastassios Economou, Tobias Busche
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.00418

Functional Investigation of Iron-Responsive Microsomal Proteins, including MirC, in Aspergillus fumigatus
Cited by: 15
Author(s): Eoin Mulvihill, Nicola M. Moloney, Rebecca A. Owens, Stephen K. Dolan, Lauren Russell, Seán Doyle
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.03081

Proteomic Profiling Reveals the Architecture of Granulomatous Lesions Caused by Tuberculosis and Mycobacterium avium Complex Lung Disease
Cited by: 12
Author(s): Shintaro Seto, Kozo Morimoto, Tsutomu Yoshida, Masayuki Hiramatsu, Makoto Hijikata, Toshi Nagata, Fumihito Kikuchi, Yuji Shiraishi, Atsuyuki Kurashima, Naoto Keicho
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9050993

Host Response of Atlantic Salmon (Salmo salar) Re-Inoculated with Paramoeba perurans
Cited by: 1
Author(s): Michelle McCormack, Anita Talbot, Eugene Dillon, Ian O’Connor, Eugene MacCarthy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-018-0243-5

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms
Cited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: about 8 years ago

10.1007/s12520-020-01199-8

Child murder in the Early Bronze Age: proteomic sex identification of a cold case from Schleinbach, Austria
Cited by: 15
Author(s): Katharina Rebay‐Salisbury, Lukas Janker, Doris Pany‐Kucera, Dina Schuster, Michaela Spannagl‐Steiner, Lukas Waltenberger, Roderick B. Salisbury, Fabian Kanz
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.03033

Characterization of Sigma Factor Genes in Streptomyces lividans TK24 Using a Genomic Library-Based Approach for Multiple Gene Deletions
Cited by: 14
Author(s): Yuriy Rebets, Konstantinos C. Tsolis, Elísabet Eik Guðmundsdóttir, Joachim Koepff, Beata Wawiernia, Tobias Busche, Arne Bleidt, Liliya Horbal, Maksym Myronovskyi, Yousra Ahmed, Wolfgang Wiechert, Christian Rückert, Mohamed Belal Hamed, Bohdan Bilyk, Jozef Anné, Ólafur H. Friðjónsson, Jörn Kalinowski, Marco Oldiges, Anastassios Economou, Andriy Luzhetskyy
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2018.03285

Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Escherichia coli Modulates Proteolysis of LpxC
Cited by: 31
Author(s): Nikolas Thomanek, Jan Arends, Claudia Lindemann, Katalin Barkovits, Helmut E. Meyer, Katrin Marcus, Franz Narberhaus
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2016.00533

Tyrosine 601 of Bacillus subtilis DnaK Undergoes Phosphorylation and Is Crucial for Chaperone Activity and Heat Shock Survival‡
Cited by: 12
Author(s): Lei Shi, Vaishnavi Ravikumar, Abderahmane Derouiche, Boris Maček, Ivan Mijaković
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.00100

Deprivation of the Periplasmic Chaperone SurA Reduces Virulence and Restores Antibiotic Susceptibility of Multidrug-Resistant Pseudomonas aeruginosa
Cited by: 28
Author(s): Kristina Klein, Michael Sonnabend, Lisa Lucie Frank, Karolin Leibiger, Mirita Franz‐Wachtel, Boris Maček, Thomas Trunk, Jack C. Leo, Ingo B. Autenrieth, Monika Schütz, Erwin Bohn
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms8121958

Echovirus-30 Infection Alters Host Proteins in Lipid Rafts at the Cerebrospinal Fluid Barrier In Vitro
Cited by: 1
Author(s): Marie Wiatr, Simon Staubach, Ricardo Figueiredo, Carolin Stump-Guthier, Hiroshi Ishikawa, Christian Schwerk, Horst Schroten, Franz‐Georg Hanisch, Henriette Rudolph, Tobias Tenenbaum
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.623735

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylated Proteins in Fusarium oxysporum
Cited by: 5
Author(s): Hengwei Qian, Lulu Wang, Xian-Liang Ma, Xingling Yi, Baoshan Wang, Wenxing Liang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.719337

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Aspergillus niger in Peanuts
Cited by: 6
Author(s): Manlin Xu, Xia Zhang, Jing Yu, Zhiqing Guo, Ying Liu, Xinying Song, Kang He, Guowei Li, Yucheng Chi
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2014.00751

Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23
Cited by: 23
Author(s): Aamani Rupakula, Yue Lu, Thomas Kruse, Sjef Boeren, Christof Holliger, Hauke Smidt, Julien Maillard
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2014.00356

Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomics
Cited by: 17
Author(s): Frithjof Glowinski, Carsten Holland, Bernd Thiede, Peter R. Jungblut, Thomas Meyer
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2019.02613

Proteome-Wide Identification of Lysine Propionylation in the Conidial and Mycelial Stages of Trichophyton rubrum
Cited by: 9
Author(s): Xingye Xu, Xingwei Cao, Jian Yang, Lihong Chen, Bo Liu, Tao Liu, Qi Jin
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.632367

Comprehensive Succinylome Profiling Reveals the Pivotal Role of Lysine Succinylation in Energy Metabolism and Quorum Sensing of Staphylococcus epidermidis
Cited by: 9
Author(s): Yiping Zhao, Yang Han, Yuzhe Sun, Zhen-Dong Wei, Jialong Chen, Xueli Niu, Qian An, Li Zhang, Ruiqun Qi, Xinghua Gao
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jprot.2017.08.015

Quantitative phosphoproteomic analysis of acquired cancer drug resistance to pazopanib and dasatinib
Cited by: 27
Author(s): Simon Vyse, Frank McCarthy, Malgorzata Broncel, Angela Paul, Jocelyn P. Wong, Amandeep Bhamra, Paul H. Huang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2021.639123

Proteomic Analysis of Caspofungin-Induced Responses in Planktonic Cells and Biofilms of Candida albicans
Cited by: 3
Author(s): Peng Li, Chaminda Jayampath Seneviratne, Qingxian Luan, Lijian Jin
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2015.00237

Comparative Ser/Thr/Tyr phosphoproteomics between two mycobacterial species: the fast growing Mycobacterium smegmatis and the slow growing Mycobacterium bovis BCG
Cited by: 30
Author(s): Kehilwe C. Nakedi, Andrew J. M. Nel, Shaun Garnett, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 1
Published: over 11 years ago

10.1186/s13046-018-0737-z

Lipid accumulation in human breast cancer cells injured by iron depletors
Cited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-021-01879-w

Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancer
Cited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.00406

The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur Species
Cited by: 4
Author(s): Simona Riedel, Beata Siemiątkowska, Mutsumi Watanabe, Christina S. Müller, Volker Schünemann, Rainer Hoefgen, Silke Leimkühler
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-021-02095-2

circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinoma
Cited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.00382

Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440
Cited by: 36
Author(s): Wing‐Jin Li, Tanja Narancic, Shane T. Kenny, Paul-Joachim Niehoff, Kevin E. O’Connor, Lars M. Blank, Nick Wierckx
Software Mentions: 1
Published: over 6 years ago

10.1007/s00204-020-02712-7

Quantitative phosphoproteomics to unravel the cellular response to chemical stressors with different modes of action
Cited by: 13
Author(s): Bharath Sampadi, Alex Pines, Stephanie Munk, Branislav Mišovic, Anton J. de Groot, Bob van de Water, Jesper V. Olsen, Leon H.F. Mullenders, Harry Vrieling
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.00111

Heat and Pressure Resistance in Escherichia coli Relates to Protein Folding and Aggregation
Cited by: 15
Author(s): Hui Li, Ryan G. Mercer, Jürgen Behr, S. Heinzlmeir, Lynn M. McMullen, Rudi F. Vogel, Michael G. Gänzle
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01942

The Tyrosine-Autokinase UbK Is Required for Proper Cell Growth and Cell Morphology of Streptococcus pneumoniae
Cited by: 12
Author(s): Anaïs Pelletier, Céline Freton, Clément Gallay, Jennyfer Trouve, Caroline Cluzel, Mirita Franz‐Wachtel, Boris Maček, Jean‐Michel Jault, Christophe Grangeasse, Sébastien Guiral
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.559440

Secretome-Wide Analysis of Lysine Acetylation in Fusarium oxysporum f. sp. lycopersici Provides Novel Insights Into Infection-Related Proteins
Cited by: 9
Author(s): Jingtao Li, Mingming Gao, Dean W. Gabriel, Wenxing Liang, Limin Song
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.00546

Iron Limitation in Klebsiella pneumoniae Defines New Roles for Lon Protease in Homeostasis and Degradation by Quantitative Proteomics
Cited by: 17
Author(s): Benjamin Muselius, Arjun Sukumaran, Jason Yeung, Jennifer Geddes‐McAlister
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9061258

Differential Exoproteome and Biochemical Characterisation of Neoparamoeba perurans
Cited by: 2
Author(s): Kerrie Ní Dhufaigh, Natasha A. Botwright, Eugene Dillon, Ian O’Connor, Eugene MacCarthy, Orla Slattery
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.00795

Comparative Proteomic Analysis of Mycobacterium tuberculosis Lineage 7 and Lineage 4 Strains Reveals Differentially Abundant Proteins Linked to Slow Growth and Virulence
Cited by: 19
Author(s): Solomon Abebe Yimer, Alemayehu Godana Birhanu, Shewit Kalayou, Tahira Riaz, Ephrem Debebe Zegeye, Getachew Tesfaye Beyene, Carol Holm‐Hansen, Gunnstein Norheim, Markose Abebe, Abraham Aseffa, Tone Tønjum
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.565914

Phenotypic Modulation of Biofilm Formation in a Staphylococcus epidermidis Orthopedic Clinical Isolate Grown Under Different Mechanical Stimuli: Contribution From a Combined Proteomic Study
Cited by: 2
Author(s): Marta Bottagisio, Pietro Barbacini, Alessandro Bidossi, Enrica Torretta, Elinor deLancey-Pulcini, Cecilia Gelfi, Garth A. James, Arianna B. Lovati, Daniele Capitanio
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms9061144

Revisiting Ehrlichia ruminantium Replication Cycle Using Proteomics: The Host and the Bacterium Perspectives
Cited by: 2
Author(s): Isabel Marcelino, Philippe Holzmüller, Ana Varela Coelho, Gabriel Mazzucchelli, Bernard Fernandez, Nathalie Vachiéry
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9040804

Early Post-Prandial Regulation of Protein Expression in the Midgut of Chagas Disease Vector Rhodnius prolixus Highlights New Potential Targets for Vector Control Strategy
Cited by: 7
Author(s): Radouane Ouali, Larissa Rezende Vieira, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01401

The ER Lumenal Hsp70 Protein FpLhs1 Is Important for Conidiation and Plant Infection in Fusarium pseudograminearum
Cited by: 19
Author(s): Linlin Chen, Xuejing Geng, Yuming Ma, Jingya Zhao, Wenbo Chen, Xiaoping Xing, Yan Shi, Bing‐Jian Sun, Honglian Li
Software Mentions: 1
Published: over 7 years ago

10.1084/jem.20200206

Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutinin
Cited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: over 6 years ago

10.1007/s00204-021-03042-y

Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier function
Cited by: 7
Author(s): Giorgia Del Favero, Lukas Janker, Benjamin Neuditschko, Julia Hohenbichler, Еndre Kiss, Lydia Woelflingseder, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01844

TrypOx, a Novel Eukaryotic Homolog of the Redox-Regulated Chaperone Hsp33 in Trypanosoma brucei
Cited by: 4
Author(s): Samar Aramin, Rosi Fassler, Vaibhav Chikne, Mor Goldenberg, Tal Arian, Liat Kolet Eliaz, Oded Rimon, Oren Ram, Shulamit Michaeli, Dana Reichmann
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.03083

Quantitative Phosphoproteome Analysis of Clostridioides difficile Toxin B Treated Human Epithelial Cells
Cited by: 5
Author(s): Johannes Junemann, Ingo Just, Ralf Gerhard, Andreas Pich
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.01497

Comprehensive Transcriptome and Proteome Analyses Reveal the Modulation of Aflatoxin Production by Aspergillus flavus on Different Crop Substrates
Cited by: 6
Author(s): Li Xu, Yiran Jiang, Longxue Ma, Xiaoyun Ma, Yang Liu, Jianguo Shan, Ke Ma, Fuguo Xing
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.03130

Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1
Cited by: 29
Author(s): Benjamin H. Gregson, Gergana Metodieva, Metodi V. Metodiev, Peter N. Golyshin, Boyd A. McKew
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.00592

Proteomics Reveal Enhanced Oxidative Stress Responses and Metabolic Adaptation in Acidithiobacillus ferrooxidans Biofilm Cells on Pyrite
Cited by: 42
Author(s): Sören Bellenberg, Dieu Huynh, Ansgar Poetsch, Wolfgang Sand, Mario Vera
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.657562

Phosphoproteome Study of Escherichia coli Devoid of Ser/Thr Kinase YeaG During the Metabolic Shift From Glucose to Malate
Cited by: 9
Author(s): Abida Sultan, Carsten Jers, Tariq Ganief, Lei Shi, Mériem Senissar, Julie Bonne Køhler, Boris Maček, Ivan Mijaković
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.550760

Lineage-Specific Proteomic Signatures in the Mycobacterium tuberculosis Complex Reveal Differential Abundance of Proteins Involved in Virulence, DNA Repair, CRISPR-Cas, Bioenergetics and Lipid Metabolism
Cited by: 15
Author(s): Solomon Abebe Yimer, Shewit Kalayou, Håvard Homberset, Alemayehu Godana Birhanu, Tahira Riaz, Ephrem Debebe Zegeye, Timo Lutter, Markos Abebe, Carol Holm‐Hansen, Abraham Aseffa, Tone Tønjum
Software Mentions: 1
Published: about 6 years ago

10.1080/20013078.2018.1490145

Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatography
Cited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms8020295

Proteomic and Transcriptional Profiles of Human Stem Cell-Derived β Cells Following Enteroviral Challenge
Cited by: 6
Author(s): Julius O. Nyalwidhe, Agata Jurczyk, Basanthi Satish, Sambra D. Redick, Natasha Qaisar, Melanie I. Trombly, Pranitha Vangala, Riccardo Racicot, Rita Bortell, David M. Harlan, Dale L. Greiner, Michael A. Brehm, Jerry L. Nadler, Jennifer Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.00089

Comparative Analysis of Salivary Gland Proteomes of Two Glossina Species that Exhibit Differential Hytrosavirus Pathologies
Cited by: 9
Author(s): Henry M. Kariithi, İkbal Agah İnce, Sjef Boeren, Edwin Murungi, Irene K. Meki, Everlyne A. Otieno, Steven Ger Nyanjom, Monique M. van Oers, Just M. Vlak, Adly M. M. Abd-Alla
Software Mentions: 1
Published: over 10 years ago

10.1007/s00203-017-1381-2

Identification of proteins differentially expressed by Chlamydia trachomatis treated with chlamydiaphage capsid protein VP1 during intracellular growth
Cited by: 7
Author(s): Jingyue Ma, Yuan Sun, Changgui Sun, Quan Zhou, Mei Qi, Jie Kong, Jing Wang, Yuanjun Liu, Quanzhong Liu
Software Mentions: 1
Published: over 9 years ago

10.1080/20013078.2019.1635420

Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasma
Cited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2021.628801

Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
Cited by: 30
Author(s): Shelby L Reimer, Daniel R. Beniac, Shannon L Hiebert, Timothy F. Booth, Patrick Chong, Garrett Westmacott, George G. Zhanel, Denice C. Bay
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02025

The Response of Rhodotorula mucilaginosa to Patulin Based on Lysine Crotonylation
Cited by: 21
Author(s): Qiya Yang, Yulin Li, Maurice Tibiru Apaliya, Xizhong Zheng, Boateng Nana Adwoa Serwah, Xiaoyun Zhang, Hongyin Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2021.741875

Quantitative Proteomic Analysis for High- and Low-Aflatoxin-Yield Aspergillus flavus Strains Isolated From Natural Environments
Cited by: 3
Author(s): Tao Li, Zhaowei Zhang, Yu Wang, Ying Liu, Jiang Zhu, Rui Hu, Yunhuang Yang, Maili Liu
Software Mentions: 1
Published: about 5 years ago