cran: Andromeda | Projects | Ecosyste.ms: Papers

10.1098/rsob.200405

A TOR (target of rapamycin) and nutritional phosphoproteome of fission yeast reveals novel targets in networks conserved in humans
Cited by: 3
Author(s): Lenka Hálová, David Cobley, Mirita Franz‐Wachtel, Tingting Wang, Kaitlin R. Morrison, Karsten Krug, Nicolas C. Nalpas, Boris Maček, Iain Hagan, Sean J. Humphrey, Janni Petersen
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.yjsbx.2018.100002

3D mapping of native extracellular matrix reveals cellular responses to the microenvironment
Cited by: 13
Author(s): Zipora Lansky, Yael Mutsafi, Lothar Houben, Tal Ilani, Gad Armony, Sharon G. Wolf, Deborah Fass
Software Mentions: 1
Published: about 6 years ago

10.1002/term.3081

Proteomic profiling of striatal tissue of a rat model of Parkinson's disease after implantation of collagen‐encapsulated human umbilical cord mesenchymal stem cells
Cited by: 2
Author(s): Anna Santaella, Hans Wessels, Purva Kulkarni, Jolein Gloerich, H. Bea Kuiperij, Bastiaan R. Bloem, Alain J. van Gool, Sílvia Cabré, Verónica Alamilla, Marcel M. Verbeek
Software Mentions: 1
Published: over 4 years ago

10.1590/1678-9199-JVATITD-2020-0053

Oxidative stress and antioxidant defense in detoxification systems of snake venom-induced toxicity
Cited by: 5
Author(s): Degang Dong, Zhongping Deng, Zhangren Yan, Wenli Mao, Jae-Seon Yi, Mei Song, Qiang Li, Jun Chen, Qi Chen, Liang Liu, Xi Wang, Xiuqin Huang, Wanchun Wang
Software Mentions: 1
Published: about 5 years ago

10.1128/JVI.01751-17

Viperin Targets Flavivirus Virulence by Inducing Assembly of Noninfectious Capsid Particles
Cited by: 39
Author(s): Kirstin Vonderstein, Emma Nilsson, Philipp Hubel, Larsard Nygard Skalman, Arunkumar S. Upadhyay, Jenny Pasto, Andreas Pichlmair, Richard Lundmark, Anna K. Överby
Software Mentions: 1
Published: about 7 years ago

10.1128/JVI.02211-17

N-Terminomics TAILS Identifies Host Cell Substrates of Poliovirus and Coxsackievirus B3 3C Proteinases That Modulate Virus Infection
Cited by: 58
Author(s): Julienne Jagdeo, Antoine Dufour, Théo Klein, Nestor Solis, Oded Kleifeld, Jayachandran N. Kizhakkedathu, Honglin Luo, Christopher M. Overall, Eric Jan
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.03262-15

ARID3B: a Novel Regulator of the Kaposi's Sarcoma-Associated Herpesvirus Lytic Cycle
Cited by: 10
Author(s): Janet Wood, James R. Boyne, Christina Paulus, Brian R. Jackson, Michael Nevels, Adrian Whitehouse, David J. Hughes
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/1659468

Oxidative Stress Induced by the Deubiquitinase Inhibitor b-AP15 Is Associated with Mitochondrial Impairment
Cited by: 8
Author(s): Xiaonan Zhang, Belén Espinosa, Amir Ata Saei, Pädraig D’Arcy, Roman A. Zubarev, Stig Linder
Software Mentions: 1
Published: over 5 years ago

10.3390/nu11102263

Comprehensive Detection of Isopeptides between Human Tissue Transglutaminase and Gluten Peptides
Cited by: 11
Author(s): Barbara Lexhaller, Christina Ludwig, Katharina Anne Scherf
Software Mentions: 1
Published: over 5 years ago

10.3390/nu9090963

Effect of Processing Intensity on Immunologically Active Bovine Milk Serum Proteins
Cited by: 53
Author(s): Tabea Brick, Markus Ege, Sjef Boeren, A. Böck, Erika von Mutius, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: over 7 years ago

10.3390/nu11030499

Variability of Serum Proteins in Chinese and Dutch Human Milk during Lactation
Cited by: 21
Author(s): M. Elwakiel, Sjef Boeren, Jos A. Hageman, Ignatius Man‐Yau Szeto, Henk A. Schols, Kasper Hettinga
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu12082483

Peptide Release after Simulated Infant In Vitro Digestion of Dry Heated Cow’s Milk Protein and Transport of Potentially Immunoreactive Peptides across the Caco-2 Cell Monolayer
Cited by: 14
Author(s): Hannah E. Zenker, Harry J. Wichers, Monic M M Tomassen, Sjef Boeren, Nicolette W. de Jong, Kasper Hettinga
Software Mentions: 1
Published: over 4 years ago

10.3390/nu10121981

Proteomic Analysis of Zn Depletion/Repletion in the Hormone-Secreting Thyroid Follicular Cell Line FRTL-5
Cited by: 3
Author(s): Barbara Guantario, Antonio Capolupo, Maria Chiara Monti, Guido Leoni, Giulia Ranaldi, Alessandra Tosco, Liberato Marzullo, Chiara Murgia, Giuditta Perozzi
Software Mentions: 1
Published: about 6 years ago

10.3390/nu12041169

Maternal Allergy and the Presence of Nonhuman Proteinaceous Molecules in Human Milk
Cited by: 9
Author(s): Pieter Dekker, Sjef Boeren, Alet H. Wijga, Gerard H. Koppelman, Jacques Vervoort, Kasper Hettinga
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu12020425

Whey Peptides Stimulate Differentiation and Lipid Metabolism in Adipocytes and Ameliorate Lipotoxicity-Induced Insulin Resistance in Muscle Cells
Cited by: 20
Author(s): Kenneth D’Souza, Angella Mercer, Hannah Mawhinney, Thomas Pulinilkunnil, Chibuike C. Udenigwe, Petra C. Kienesberger
Software Mentions: 1
Published: about 5 years ago

10.3390/nu13082657

Anti-Salmonella Activity and Peptidomic Profiling of Peptide Fractions Produced from Sturgeon Fish Skin Collagen (Huso huso) Using Commercial Enzymes
Cited by: 8
Author(s): Maryam Atef, Yasmina Ait Chait, Seýed Mahdi Ojagh, Ali Mohammad Latifi, Mina Esmaeili, Riadh Hammami, Chibuike C. Udenigwe
Software Mentions: 1
Published: over 3 years ago

10.1021/acsomega.0c05997

Influence of Post-Translational Modifications on Protein Identification in Database Searches
Cited by: 4
Author(s): Fanni Bugyi, Dániel Szabó, Győző Szabó, Ágnes Révész, Veronika F.S. Pape, Eszter Soltész‐Katona, Eszter Tóth, Orsolya Kovács, Tamás Langó, Károly Vékey, László Drahos
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13568-017-0393-2

Systematic analysis of the lysine acetylome reveals diverse functions of lysine acetylation in the oleaginous yeast Yarrowia lipolytica
Cited by: 16
Author(s): Guangyuan Wang, Leilei Guo, Wenxing Liang, Zhen‐Ming Chi, Lin Liu
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00401-014-1329-4

C9orf72 FTLD/ALS-associated Gly-Ala dipeptide repeat proteins cause neuronal toxicity and Unc119 sequestration
Cited by: 277
Author(s): Stephanie May, Daniel Hornburg, Martin H. Schludi, Thomas Arzberger, Kristin Rentzsch, Benjamin M. Schwenk, Friedrich A. Grässer, Kohji Mori, Elisabeth Kremmer, Julia Banzhaf-Strathmann, Matthias Mann, Felix Meissner, Dieter Edbauer
Software Mentions: 1
Published: over 10 years ago

10.1186/s40478-020-00943-4

Transmission of ALS pathogenesis by the cerebrospinal fluid
Cited by: 26
Author(s): Pooja-Shree Mishra, Hejer Boutej, Geneviève Soucy, Christine Bareil, Sunil Kumar, Vincent Picher-Martel, Nicolas Dupré, Jasna Križ, Jean‐Pierre Julien
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40478-019-0806-3

Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy
Cited by: 16
Author(s): Wiebke A. Rehorst, Maximilian P. Thelen, Hendrik Nolte, Clara Türk, Sebahattin Çırak, Jonathan M. Peterson, G. William Wong, Brunhilde Wirth, Marcus Krüger, Dominic Winter, Min Jeong Kye
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-017-0466-0

Enhanced exosome secretion in Down syndrome brain - a protective mechanism to alleviate neuronal endosomal abnormalities
Cited by: 81
Author(s): Sébastien A. Gauthier, Rocío Pérez‐González, Ajay Sharma, Fang-Ke Huang, Melissa J. Alldred, Monika Pawlik, Gurjinder Kaur, Stephen D. Ginsberg, Thomas A. Neubert
Software Mentions: 1
Published: over 7 years ago

10.1002/advs.202001467

Multiresolution Imaging Using Bioluminescence Resonance Energy Transfer Identifies Distinct Biodistribution Profiles of Extracellular Vesicles and Exomeres with Redirected Tropism
Cited by: 42
Author(s): Anthony Yan Tang Wu, Yun‐Chieh Sung, Yen–Ju Chen, Steven Ting Yu Chou, Vanessa Guo, Jasper Che Yung Chien, John Jun Sheng Ko, Alan Ling Yang, Hsi Chien Huang, Ju Chen Chuang, Syuan Wu, Meng‐Ru Ho, Maria Ericsson, Wan-Wan Lin, Chantal Hoi Yin Cheung, Hsueh Fen Juan, Koji Ueda, Yunching Chen, Charles P. Lai
Software Mentions: 1
Published: over 4 years ago

10.1002/advs.202002596

Exosomes for Wound Healing: Purification Optimization and Identification of Bioactive Components
Cited by: 46
Author(s): Britta Hettich, Maya Ben‐Yehuda Greenwald, Sabine Werner, Jean‐Christophe Leroux
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.202361

Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation
Cited by: 10
Author(s): Maria Hernandez-Valladares, Elise Aasebø, Frode S. Berven, Frode Selheim, Øystein Bruserud
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.101404

Induction, regulation and roles of neural adhesion molecule L1CAM in cellular senescence
Cited by: 12
Author(s): Blanka Mrázková, Rastislav Dzijak, Terezie Imrichová, Lenka Kyjacová, Péter Baráth, Petr Džubák, Dušan Holub, Marián Hajdúch, Zuzana Nahácka, Ladislav Anděra, Petr Holicek, Pavla Vašicová, Olena Sapega, Jiří Bártek, Zdeněk Hodný
Software Mentions: 1
Published: almost 7 years ago

10.1111/acel.13192

The aged hematopoietic system promotes hippocampal‐dependent cognitive decline
Cited by: 15
Author(s): Lucas K. Smith, Evgenia Verovskaya, Gregor Bieri, Alana Horowitz, Saskia N. I. von Ungern‐Sternberg, Karin Lin, Peter Seizer, Emmanuelle Passegué, Saul Villeda
Software Mentions: 1
Published: over 4 years ago

10.1007/s10456-019-09688-8

Cancer-associated fibroblast-derived WNT2 increases tumor angiogenesis in colon cancer
Cited by: 141
Author(s): Daniela Unterleuthner, Patrick Neuhold, Katharina Schwarz, Lukas Janker, Benjamin Neuditschko, Harini Nivarthi, Ilija Crnčec, Nina Kramer, Christine Unger, Markus Hengstschläger, Robert Eferl, Richard Moriggl, Wolfgang Sommergruber, Christopher Gerner, Helmut Dolznig
Software Mentions: 1
Published: over 5 years ago

10.3390/antibiotics10020116

Staphylococcus aureus Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral Biofilm
Cited by: 7
Author(s): Etyene Schnurr, Pune Nina Paqué, Thomas Attin, Paolo Nanni, Jonas Grossmann, Silva Holtfreter, Barbara M. Bröker, Christian Köhler, Binh An Diep, Apoena de Aguiar Ribeiro, Thomas Thurnheer
Software Mentions: 1
Published: about 4 years ago

10.3390/antibiotics8040248

Proteomic and Metabolomic Analyses of a Tea-Tree Oil-Selected Staphylococcus aureus Small Colony Variant
Cited by: 4
Author(s): Nathanial Torres, Steven D. Hartson, Janet Rogers, John E. Gustafson
Software Mentions: 1
Published: about 5 years ago

10.3390/antibiotics9110757

Putative Antimicrobial Peptides of the Posterior Salivary Glands from the Cephalopod Octopus vulgaris Revealed by Exploring a Composite Protein Database
Cited by: 6
Author(s): Daniela Almeida, Dany Domínguez-Pérez, Ana Lemos de Matos, Guillermı́n Agüero-Chapin, Hugo Osório, Vı́tor Vasconcelos, Alexandre Campos, Agostinho Antunes
Software Mentions: 1
Published: over 4 years ago

10.3390/antibiotics10050501

Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii Isolate
Cited by: 1
Author(s): Suruchi Nepal, Sandra Maaß, Stefano Grasso, Francis M. Cavallo, Jürgen Bartel, Dörte Becher, Erik Bathoorn, Jan Maarten van Dijl
Software Mentions: 1
Published: almost 4 years ago

10.3390/antiox10071134

The Interplay between S-Glutathionylation and Phosphorylation of Cardiac Troponin I and Myosin Binding Protein C in End-Stage Human Failing Hearts
Cited by: 12
Author(s): Heidi Budde, Roua Hassoun, Melina Tangos, Saltanat Zhazykbayeva, Melissa Herwig, Marharyta Varatnitskaya, Marcel Sieme, Simin Delalat, Innas Sultana, Detmar Kolijn, Kamilla Gömöri, Muhammad Jarkas, Mária Lódi, Kornélia Jaquet, Árṕad Kov́acs, Hans Georg Mannherz, Vasco Sequeira, Andreas Mügge, Lars I. Leichert, Samuel Sossalla, Nazha Hamdani
Software Mentions: 1
Published: over 3 years ago

10.3390/antiox10071055

Novel Extract from Beetle Ulomoides dermestoides: A Study of Composition and Antioxidant Activity
Cited by: 10
Author(s): Н. А. Ушакова, E. S. Brodsky, Olga V. Tikhonova, А. Е. Донцов, М. В. Марсова, A. A. Shelepchikov, А. И. Бастраков
Software Mentions: 1
Published: over 3 years ago

10.1093/aobpla/plaa042

A proteomic analysis of grain yield-related traits in wheat
Cited by: 11
Author(s): Sintayehu Daba, Xiaoqin Liu, Uma K. Aryal, Mohsen Mohammadi
Software Mentions: 1
Published: over 4 years ago

10.1128/AEM.02808-19

Identification of Genes Required for Glucan Exopolysaccharide Production in Lactobacillus johnsonii Suggests a Novel Biosynthesis Mechanism
Cited by: 12
Author(s): Melinda J. Mayer, Alfonsina D’Amato, Ian J. Colquhoun, Gwénaëlle Le Gall, Arjan Narbad
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00253-020-10654-4

Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria
Cited by: 4
Author(s): Lasse van Geelen, Farnusch Kaschani, Shabnam Shaneh Sazzadeh, Emmanuel T Adeniyi, Dieter Meier, Peter Proksch, Klaus Pfeffer, Markus Kaiser, Thomas R. Ioerger, Rainer Kalscheuer
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00203-017-1381-2

Identification of proteins differentially expressed by Chlamydia trachomatis treated with chlamydiaphage capsid protein VP1 during intracellular growth
Cited by: 7
Author(s): Jingyue Ma, Yuan Sun, Changgui Sun, Quan Zhou, Mei Qi, Jie Kong, Jing Wang, Yuanjun Liu, Quanzhong Liu
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00204-021-03042-y

Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier function
Cited by: 7
Author(s): Giorgia Del Favero, Lukas Janker, Benjamin Neuditschko, Julia Hohenbichler, Еndre Kiss, Lydia Woelflingseder, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00204-020-02712-7

Quantitative phosphoproteomics to unravel the cellular response to chemical stressors with different modes of action
Cited by: 13
Author(s): Bharath Sampadi, Alex Pines, Stephanie Munk, Branislav Mišovic, Anton J. de Groot, Bob van de Water, Jesper V. Olsen, Leon H.F. Mullenders, Harry Vrieling
Software Mentions: 1
Published: almost 5 years ago

10.1007/s12520-020-01199-8

Child murder in the Early Bronze Age: proteomic sex identification of a cold case from Schleinbach, Austria
Cited by: 15
Author(s): Katharina Rebay‐Salisbury, Lukas Janker, Doris Pany‐Kucera, Dina Schuster, Michaela Spannagl‐Steiner, Lukas Waltenberger, Roderick B. Salisbury, Fabian Kanz
Software Mentions: 1
Published: over 4 years ago

10.1080/15548627.2020.1820778

Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90.1 and ROF1
Cited by: 55
Author(s): Venkatesh P. Thirumalaikumar, Michał Górka, Karina Schulz, Céline Masclaux-Daubresse, Arun Sampathkumar, Aleksandra Skirycz, R.D. Vierstra, Salma Balazadeh
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-13-S16-S12

1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data
Cited by: 493
Author(s): Juergen Cox, Matthias Mann
Software Mentions: 1
Published: over 12 years ago

10.1186/s12915-020-00893-2

Spontaneous regression of micro-metastases following primary tumor excision: a critical role for primary tumor secretome
Cited by: 10
Author(s): Lee Shaashua, Anabel Eckerling, Boaz Israeli, Gali Yanovich, Ella Rosenne, Suzana Fichman-Horn, Ido Ben Zvi, Liat Sorski, Rita Haldar, Ronit Satchi‐Fainaro, Tamar Geiger, Erica K. Sloan, Shamgar Ben‐Eliyahu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12915-015-0184-7

Phosphoproteome dynamics mediate revival of bacterial spores
Cited by: 24
Author(s): Alex Rosenberg, Boumediene Soufi, Vaishnavi Ravikumar, Nelson C. Soares, Karsten Krug, Yoav Smith, Boris Maček, Sigal Ben-Yehuda
Software Mentions: 1
Published: over 9 years ago

10.1186/s12915-020-00814-3

The evolution of the Puf superfamily of proteins across the tree of eukaryotes
Cited by: 9
Author(s): Vladimíra Najdrová, Courtney W. Stairs, Martina Vinopalová, Luboš Voleman, Pavel Doležal
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-017-3784-5

The ANDROMEDA prospective cohort study: predictive value of combined criteria to tailor breast cancer screening and new opportunities from circulating markers: study protocol
Cited by: 13
Author(s): Livia Giordano, Federica Gallo, Elisabetta Petracci, Giovanna Chiorino, Nereo Segnan
Software Mentions: 1
Published: about 7 years ago

10.1186/s12885-019-5521-8

Endothelial cell-derived nidogen-1 inhibits migration of SK-BR-3 breast cancer cells
Cited by: 12
Author(s): Daniela A. Ferraro, Francesca Patella, Sara Zanivan, Cinzia Donato, Nicola Aceto, Monica Giannotta, Maren Diepenbruck, Gerhard Christofori, Martin Buess
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-07365-5

Proteome-wide and lysine crotonylation profiling reveals the importance of crotonylation in chrysanthemum (Dendranthema grandiforum) under low-temperature
Cited by: 11
Author(s): Ping Lin, Huiru Bai, Ling He, Qiuxiang Huang, Qin-han Zeng, Yuanzhi Pan, Beibei Jiang, Fan Zhang, Lei Zhang, Qinglin Liu
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2164-12-358

Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms
Cited by: 12
Author(s): Kung-Yen Chang, David C. Muddiman
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-15-894

RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus
Cited by: 44
Author(s): Grainne O’Keeffe, Stephen Hammel, Rebecca A. Owens, Thomas M. Keane, David A. Fitzpatrick, Gary W. Jones, Seán Doyle
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-018-4535-y

Systematic analysis of the lysine malonylome in common wheat
Cited by: 22
Author(s): Jiabin Liu, Guangyuan Wang, Qingsong Lin, Wenxing Liang, Zhiqiang Gao, Mu Peng, Guiquan Li, Limin Song
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-15-160

Functional genomics reveals that Clostridium difficileSpo0A coordinates sporulation, virulence and metabolism
Cited by: 108
Author(s): Laura J. Pettit, Hilary P. Browne, Lu Yu, Wiep Klaas Smits, Robert P. Fagan, Lars Barquist, Melissa J. Martin, David Goulding, Sylvia H. Duncan, Harry J. Flint, Gordon Dougan, Jyoti S. Choudhary, Trevor D. Lawley
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-019-6227-7

Comparative acetylome analysis reveals the potential roles of lysine acetylation for DON biosynthesis in Fusarium graminearum
Cited by: 13
Author(s): Shanyue Zhou, Chunlan Wu
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-777

Urinary proteomic and non-prefractionation quantitative phosphoproteomic analysis during pregnancy and non-pregnancy
Cited by: 35
Author(s): Jianhua Zheng, Liguo Liu, Jin Wang, Qi Jin
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-5848-1

The difference in serum proteomes in schizophrenia and bipolar disorder
Cited by: 25
Author(s): L. Smirnova, A. Seregin, Irina S. Boksha, E. Yu. Dmitrieva, German G. Simutkin, E. Kornetova, Olga K. Savushkina, Anastasia Letova, Н. А. Бохан, Svetlana A. Ivanova, Victor G. Zgoda
Software Mentions: 1
Published: over 5 years ago

10.1186/s12865-015-0134-8

Impact of microRNA-130a on the neutrophil proteome
Cited by: 9
Author(s): Claus Pedersen, Jan C. Refsgaard, Ole Østergaard, Lars Juhl Jensen, Niels H H Heegaard, Niels Borregaard, Jack B. Cowland
Software Mentions: 1
Published: about 9 years ago

10.1186/s12866-021-02091-8

Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production
Cited by: 3
Author(s): Arjun Sukumaran, Samanta Pladwig, Jennifer Geddes‐McAlister
Software Mentions: 1
Published: about 4 years ago

10.1186/s12866-020-02016-x

Phenotypic and proteomic approaches of the response to iron-limited condition in Staphylococcus lugdunensis
Cited by: 6
Author(s): Marion Aubourg, Anne Dhalluin, François Gravey, Marine Pottier, Nicolas Thomy, Benoı̂t Bernay, Didier Goux, Matthieu Martineau, Jean‐Christophe Giard
Software Mentions: 1
Published: over 4 years ago

10.1186/s12866-017-1004-8

Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis
Cited by: 8
Author(s): Getachew Tesfaye Beyene, Shewit Kalayou, Tahira Riaz, Tone Tønjum
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-017-1034-2

Site-specific His/Asp phosphoproteomic analysis of prokaryotes reveals putative targets for drug resistance
Cited by: 18
Author(s): Shu-Jung Lai, I-Fan Tu, Wan-Chen Wu, Jhih-Tian Yang, Louis Y. P. Luk, Mei‐Chin Lai, Yu‐Hsuan Tsai, Shih‐Hsiung Wu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-018-1208-6

Characterisation of the cellular and proteomic response of Galleria mellonella larvae to the development of invasive aspergillosis
Cited by: 24
Author(s): Gerard Sheehan, Gráinne Clarke, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.1186/s12891-018-2380-4

In vitro chondrogenic potency of surplus chondrocytes from autologous transplantation procedures does not predict short-term clinical outcomes
Cited by: 6
Author(s): Ashraful Islam, Vegard Fossum, Ann Kristin Hansen, Ilona Urbárová, Gunnar Knutsen, Iñigo Martínez-Zubiaurre
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-019-1633-1

Soybean (Glycine max L. Merr.) seedlings response to shading: leaf structure, photosynthesis and proteomic analysis
Cited by: 49
Author(s): Yuanfang Fan, Junxu Chen, Zhong Lin Wang, Tingting Tan, Shenglan Li, Jiafeng Li, Beibei Wang, Jiawei Zhang, Yajiao Cheng, Xiaoling Wu, Wenyu Yang, Feng Yang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-020-02352-0

Low red/far-red ratio as a signal promotes carbon assimilation of soybean seedlings by increasing the photosynthetic capacity
Cited by: 34
Author(s): Feng Yang, Qinlin Liu, Yajiao Cheng, Lingyang Feng, Xiaoling Wu, Yuanfang Fan, Muhammad Ali Raza, Xiaochun Wang, Taiwen Yong, Weiguo Liu, Jiang Liu, Junbo Du, Kai Shu, Wenyu Yang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12870-018-1419-x

Comparative proteomic analysis of maize (Zea mays L.) seedlings under rice black-streaked dwarf virus infection
Cited by: 17
Author(s): Runqing Yue, Chengpeng Lu, Xiaohua Han, Songlin Guo, Shufeng Yan, Lu Liu, Fu Xiaolei, Nana Chen, Xinhai Guo, Haifeng Chi, Shuanggui Tie
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-019-2072-8

Quantitative succinyl-proteome profiling of Chinese hickory (Carya cathayensis) during the grafting process
Cited by: 10
Author(s): Huwei Yuan, Juanjuan Chen, Ying Yang, Chenjia Shen, Dongpo Xu, Junfeng Wang, Daoliang Yan, Yi He, Bingsong Zheng
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-1845-4

Comparative proteomic analysis provides novel insights into the regulation mechanism underlying papaya (Carica papaya L.) exocarp during fruit ripening process
Cited by: 8
Author(s): Jiang Bian, Siyan Ou, Ling Xu, Wanyi Mai, Meijun Ye, Haiping Gu, Tao Zhang, Changchun Yuan, Chenjia Shen, Jinxiang Wang, Kaidong Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-015-0668-1

Integrative molecular profiling indicates a central role of transitory starch breakdown in establishing a stable C/N homeostasis during cold acclimation in two natural accessions of Arabidopsis thaliana
Cited by: 29
Author(s): Matthias Nagler, Ella Nukarinen, Wolfram Weckwerth, Thomas Nägele
Software Mentions: 1
Published: about 9 years ago

10.1186/s12888-020-02540-0

Comparison of serum protein profiles between major depressive disorder and bipolar disorder
Cited by: 26
Author(s): Sang Jin Rhee, Dohyun Han, Yunna Lee, Hye Young Kim, Junhee Lee, Kangeun Lee, Hyunsuk Shin, Hyeyoon Kim, Tae Young Lee, Minah Kim, Se Hyun Kim, Yong Min Ahn, Jun Soo Kwon, Kyooseob Ha
Software Mentions: 1
Published: almost 5 years ago

10.1042/BCJ20180043

Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells
Cited by: 54
Author(s): Yugo Tsuchiya, Alexander Zhyvoloup, Jovana Baković, Naam Thomas, Bess Yi Kun Yu, Sayoni Das, Christine Orengo, Clare L. Newell, John M. Ward, Giorgio Saladino, Federico Comitani, Francesco Luigi Gervasio, О. М. Маланчук, А. И. Хоруженко, Valeriy Filonenko, Sew Y. Peak‐Chew, Mark Skehel, Ivan Gout
Software Mentions: 1
Published: over 6 years ago

10.1042/BCJ20160502

TLR and TNF-R1 activation of the MKK3/MKK6–p38α axis in macrophages is mediated by TPL-2 kinase
Cited by: 50
Author(s): Michael J. Pattison, Olivia Mitchell, Helen Flynn, Chao-Sheng Chen, Huei-Ting Yang, Hakem Ben-Addi, Stefan Boeing, Ambrosius P Snijders, Steve Ley
Software Mentions: 1
Published: over 8 years ago

10.1186/s12575-016-0043-0

Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients
Cited by: 48
Author(s): Maria Hernandez-Valladares, Elise Aasebø, Olav Mjaavatten, Marc Vaudel, Øystein Bruserud, Frode S. Berven, Frode Selheim
Software Mentions: 1
Published: over 8 years ago

10.1186/s40659-021-00327-5

Proteome profiling of different rat brain regions reveals the modulatory effect of prolonged maternal separation on proteins involved in cell death-related processes
Cited by: 6
Author(s): Zdeňka Drastichová, Vladimı́r Rudajev, Gergely Pallag, Jiřı́ Novotný
Software Mentions: 1
Published: about 4 years ago

10.3390/biology10010058

Does KRAS Play a Role in the Regulation of Colon Cancer Cells-Derived Exosomes?
Cited by: 2
Author(s): Shu Kee Eng, Ilma Ruzni Imtiaz, Bey Hing Goh, Long Chiau Ming, Ya Chee Lim, Wai Leng Lee
Software Mentions: 1
Published: about 4 years ago

10.1016/j.biomaterials.2018.05.032

Neighboring cells override 3D hydrogel matrix cues to drive human MSC quiescence
Cited by: 33
Author(s): Sandra Reis Ferreira, Peter Faull, Alexis J. Seymour, Tracy T. L. Yu, Sandra Loaiza, Holger W. Auner, Ambrosius P. Snijders, Eileen Gentleman
Software Mentions: 1
Published: over 6 years ago

10.1155/2014/916212

Power of Proteomics in Linking Oxidative Stress and Female Infertility
Cited by: 73
Author(s): Sajal Gupta, Jana Ghulmiyyah, Rakesh K. Sharma, Jessica El Halabi, Ashok Agarwal
Software Mentions: 1
Published: about 11 years ago

10.1155/2019/3950628

Quantitative Proteomic Analysis Reveals the Deregulation of Nicotinamide Adenine Dinucleotide Metabolism and CD38 in Inflammatory Bowel Disease
Cited by: 47
Author(s): Longgui Ning, Siyu Guo, Zeyu Sun, Fenming Zhang, Chengfu Xu, Xinhe Lou, Sha Li, Haojie Du, Hongtan Chen, Guofan Xu
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/7052456

Label-Free LC-MS/MS Proteomics Analyses Reveal Proteomic Changes Accompanying<i>MSTN</i>KO in C2C12 Cells
Cited by: 6
Author(s): Lamei Wang, Yu Huang, Xiaolong Wang
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/3689091

Mass Spectrometry Amyloid Typing Is Reproducible across Multiple Organ Sites
Cited by: 15
Author(s): Dušan Holub, Pavla Flodrová, Tomáš Pika, Patrik Flodr, Marián Hajdúch, Petr Džubák
Software Mentions: 1
Published: about 6 years ago

10.3390/biomedicines9091145

Transgelin Contributes to a Poor Response of Metastatic Renal Cell Carcinoma to Sunitinib Treatment
Cited by: 3
Author(s): Pavla Bouchalová, Jindřich Beránek, Petr Lapčík, David Potěšil, Ján Podhorec, Alexandr Poprach, Pavel Bouchal
Software Mentions: 1
Published: over 3 years ago

10.3390/biomedicines8080249

Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper
Cited by: 16
Author(s): Vladislav V. Babenko, Rustam H. Ziganshin, Christoph Weise, Igor A. Dyachenko, Elvira R. Shaykhutdinova, А. Н. Мурашев, Maxim N. Zhmak, Vladislav G. Starkov, Anh Hoang, Victor I. Tsetlin, Yuri N. Utkin
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines9081013

Regulation of the HTRA2 Protease Activity by an Inhibitory Antibody-Derived Peptide Ligand and the Influence on HTRA2-Specific Protein Interaction Networks in Retinal Tissues
Cited by: 7
Author(s): Carsten Schmelter, Kristian Nzogang Fomo, Natarajan Perumal, Norbert Pfeiffer, Franz H. Grus
Software Mentions: 1
Published: over 3 years ago

10.3390/biomedicines8080246

Mass-Spectrometry Based Proteome Comparison of Extracellular Vesicle Isolation Methods: Comparison of ME-kit, Size-Exclusion Chromatography, and High-Speed Centrifugation
Cited by: 30
Author(s): Anders Askeland, Anne Borup, Ole Østergaard, Jesper V. Olsen, Sigrid Marie Lund, Gunna Christiansen, Søren Risom Kristensen, Niels H. H. Heegaard, Shona Pedersen
Software Mentions: 1
Published: over 4 years ago

10.3390/biom11010113

Eicosanoid Content in Fetal Calf Serum Accounts for Reproducibility Challenges in Cell Culture
Cited by: 11
Author(s): Laura Niederstaetter, Benjamin Neuditschko, Julia Brunmair, Lukas Janker, Andrea Bileck, Giorgia Del Favero, Christopher Gerner
Software Mentions: 1
Published: about 4 years ago

10.3390/biom11081230

Epithelial Cell Line Derived from Endometriotic Lesion Mimics Macrophage Nervous Mechanism of Pain Generation on Proteome and Metabolome Levels
Cited by: 4
Author(s): Benjamin Neuditschko, Marlene Leibetseder, Julia Brunmair, Gerhard Hagn, Lukas Skos, Marlene C. Gerner, Samuel M. Meier‐Menches, Iveta Yotova, Christopher Gerner
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11081094

What Antarctic Plants Can Tell Us about Climate Changes: Temperature as a Driver for Metabolic Reprogramming
Cited by: 14
Author(s): Laura Bertini, Flora Cozzolino, Sara Proietti, Gaia Salvatore Falconieri, Ilaria Iacobucci, Rosanna Salvia, Patrizia Falabella, Maria Monti, Carla Caruso
Software Mentions: 1
Published: over 3 years ago

10.3390/biom11020164

LPS Tolerance Inhibits Cellular Respiration and Induces Global Changes in the Macrophage Secretome
Cited by: 23
Author(s): Joseph Gillen, Thunnicha Ondee, Devikala Gurusamy, Jiraphorn Issara-Amphorn, Nathan P. Manes, Sung Hwan Yoon, Asada Leelahavanichkul, Aleksandra Nita‐Lazar
Software Mentions: 1
Published: about 4 years ago

10.3390/biom10091282

Different Research Approaches in Unraveling the Venom Proteome of Naja ashei
Cited by: 7
Author(s): Konrad K. Hus, Łukasz Marczak, Vladimir Petrílla, Monika Petrillová, Jaroslav Legáth, Aleksandra Bocian
Software Mentions: 1
Published: over 4 years ago

10.3390/biom10111473

New Antibacterial Peptides from the Freshwater Mollusk Pomacea poeyana (Pilsbry, 1927)
Cited by: 13
Author(s): Melaine González García, Armando A. Rodríguez, Annia Alba, Antonio A. Vázquez, Fidel Ernesto Morales Vicente, Julio A. Perez-Erviti, Barbara Spellerberg, Steffen Stenger, Mark Grieshober, Carina Conzelmann, Jan Münch, Heinz Fabian Raber, Dennis Kubiczek, Frank Rosenau, Sebastian Wiese, Ludger Ständker, Anselmo J. Otero‐González
Software Mentions: 1
Published: over 4 years ago

10.3390/biom10060836

Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis
Cited by: 6
Author(s): Jayaseelan Murugaiyan, Murat Eravci, Christoph Weise, Uwe Roesler, Lisa D. Sprague, Heinrich Neubauer, Gamal Wareth
Software Mentions: 1
Published: over 4 years ago

10.1186/s13068-020-01748-2

Integration of proteome and transcriptome refines key molecular processes underlying oil production in Nannochloropsis oceanica
Cited by: 21
Author(s): Wuxin You, Li Wei, Yanhai Gong, Mohamed El Hajjami, Jian Xu, Ansgar Poetsch
Software Mentions: 1
Published: over 4 years ago

10.1186/s13068-021-02030-9

A novel Penicillium sumatraense isolate reveals an arsenal of degrading enzymes exploitable in algal bio-refinery processes
Cited by: 8
Author(s): Moira Giovannoni, Ilaria Larini, Valentina Scafati, Anna Scortica, Monica Compri, Daniela Pontiggia, Giacomo Zapparoli, Nicola Vitulo, Manuel Benedetti, Benedetta Mattei
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-017-0949-z

Quantitative in vivo phosphoproteomics reveals reversible signaling processes during nitrogen starvation and recovery in the biofuel model organism Chlamydomonas reinhardtii
Cited by: 38
Author(s): Valentin Roustan, Shiva Bakhtiari, Pierre-Jean Roustan, Wolfram Weckwerth
Software Mentions: 1
Published: about 7 years ago

10.1186/s13068-019-1522-8

Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation
Cited by: 21
Author(s): Zhenxing Ren, Wuxin You, Shenshen Wu, Ansgar Poetsch, Chenggang Xu
Software Mentions: 1
Published: over 5 years ago

10.1186/s13068-019-1416-9

Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium
Cited by: 22
Author(s): David A. Russo, Julie A Z Zedler, Daniel Wittmann, Benedikt Kb Möllers, Raushan Kumar Singh, Tanveer S. Batth, Bart van Oort, Jesper V. Olsen, Morten J. Bjerrum, Poul Erik Jensen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13068-019-1447-2

Unraveling essential cellulosomal components of the (Pseudo)Bacteroides cellulosolvens reveals an extensive reservoir of novel catalytic enzymes
Cited by: 9
Author(s): Olga Zhivin-Nissan, Bareket Dassa, Ely Morag, Meital Kupervaser, Yishai Levin, Edward A. Bayer
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13068-016-0658-z

Metagenomic and metaproteomic analyses of a corn stover-adapted microbial consortium EMSD5 reveal its taxonomic and enzymatic basis for degrading lignocellulose
Cited by: 81
Author(s): Ning Zhu, Jinshui Yang, Lei Ji, Jiawen Liu, Yang Yi, Hongli Yuan
Software Mentions: 1
Published: over 8 years ago

10.1038/s41416-019-0384-y

Tumour-reactive T cell subsets in the microenvironment of ovarian cancer
Cited by: 43
Author(s): Marie Christine Wulff Westergaard, Rikke Andersen, Chloé Chong, Julie Westerlin Kjeldsen, Magnus Pedersen, Christina Friese, Thomas Hasselager, Henrik Lajer, George Coukos, Michal Bassani-Sternberg, Marco Donia, Inge Marie Svane
Software Mentions: 1
Published: about 6 years ago

10.1186/s13058-016-0732-2

Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples
Cited by: 9
Author(s): Sofia Waldemarson, Emila Kurbasic, Morten Krogh, Paolo Cifani, Tord Berggård, Åke Borg, Peter James
Software Mentions: 1
Published: over 8 years ago

Projects: cran: Andromeda

Papers Mentioning Andromeda 1,724