cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3390/genes11030256

Differential Dorsolateral Prefrontal Cortex Proteomic Profiles of Suicide Victims with Mood Disorders
Cited by: 8
Author(s): Alejandra Cabello-Arreola, Ayy Ho, Ayşegül Özerdem, Alfredo B. Cuellar-Barboza, Mehmet Utku Küçüker, Carrie J. Heppelmann, M. Cristine Charlesworth, Deniz Ceylan, Craig A. Stockmeier, Grażyna Rajkowska, Mark A. Frye, Doo Sup Choi, Marin Veldić
Software Mentions: 1
Published: over 6 years ago

10.1186/s41021-021-00179-1

Weight of evidence approach using a TK gene mutation assay with human TK6 cells for follow-up of positive results in Ames tests: a collaborative study by MMS/JEMS
Cited by: 4
Author(s): Masayoshi Yasui, Takayuki Fukuda, Akiko Ukai, Jiro Maniwa, Tadashi Imamura, Tsuneo Hashizume, Haruna Yamamoto, Kaori Shibuya, Kazunori Narumi, Yohei Fujiishi, Emiko Okada, Saori Fujishima, Mika Yamamoto, Naoko Otani, Maki Nakamura, Ryoichi Nishimura, Maya Ueda, Masayuki Mishima, Kaori Matsuzaki, Akira Takeiri, Kenji Tanaka, Yuki Okada, Munehiro Nakagawa, Shuichi Hamada, Akihiko Kajikawa, Hiroshi Honda, Jun Adachi, Kentaro Misaki, Kumiko Ogawa, Masamitsu Honma
Software Mentions: 1
Published: over 5 years ago

10.1534/genetics.117.300527

Genes Important for Schizosaccharomyces pombe Meiosis Identified Through a Functional Genomics Screen
Cited by: 23
Author(s): Julie Blyth, Vasso Makrantoni, Rachael Barton, Christos Spanos, Juri Rappsilber, Adèle L. Marston
Software Mentions: 1
Published: over 8 years ago

10.1186/s13073-016-0293-0

Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome
Cited by: 166
Author(s): Niklas Graßl, Nils A. Kulak, Garwin Pichler, Philipp Geyer, Jette Jung, S. Schubert, Pavel Sinitcyn, Juergen Cox, Matthias Mann
Software Mentions: 1
Published: over 10 years ago

10.1016/j.gpb.2018.08.004

Integration of A Deep Learning Classifier with A Random Forest Approach for Predicting Malonylation Sites
Cited by: 61
Author(s): Zhen Chen, Ningning He, Yu Huang, Wen Qin, Xuhan Liu, Lei Li
Software Mentions: 1
Published: over 7 years ago

10.1016/j.gpb.2021.01.004

Global Profiling of the Lysine Crotonylome in Different Pluripotent States
Cited by: 8
Author(s): Yuan Lv, Chen Bu, Jin Meng, Carl Ward, Giacomo Volpe, Jieyi Hu, Mengling Jiang, Lin Guo, Jiekai Chen, Miguel A. Esteban, Xichen Bao, Zhongyi Cheng
Software Mentions: 1
Published: over 5 years ago

10.3390/ht8020009

Mass Spectrometry-Based Methodologies for Targeted and Untargeted Identification of Protein Covalent Adducts (Adductomics): Current Status and Challenges
Cited by: 13
Author(s): João Nunes, Catarina Charneira, Judit Morello, João A. Rodrigues, Sofia A. Pereira, Alexandra M. M. Antunes
Software Mentions: 1
Published: over 7 years ago

10.1038/s41438-019-0183-x

New insights into the heat responses of grape leaves via combined phosphoproteomic and acetylproteomic analyses
Cited by: 19
Author(s): Guotian Liu, Jianfu Jiang, Xinna Liu, Jinzhu Jiang, Lei Sun, Wei Duan, Ruimin Li, Yi Wang, David Lecourieux, Chonghuai Liu, Shaohua Li, Lijun Wang
Software Mentions: 1
Published: almost 7 years ago

10.1002/jbm4.10003

Identification of Chloride Intracellular Channel Protein 3 as a Novel Gene Affecting Human Bone Formation
Cited by: 14
Author(s): Andrea Brum, Cindy S. van der Leije, Marijke Schreuders‐Koedam, Jeroen Verhoeven, Mark Janssen, Dick H. W. Dekkers, Jeroen Demmers, Marco Eijken, Jeroen van de Peppel, J.P. van Leeuwen, Bram C. J. van der Eerden
Software Mentions: 1
Published: over 9 years ago

10.1172/jci.insight.129152

Mass spectrometry–driven exploration reveals nuances of neoepitope-driven tumor rejection
Cited by: 34
Author(s): Hakimeh Ebrahimi-Nik, Justine Michaux, William L. Corwin, Grant L.J. Keller, Tatiana Shcheglova, HuiSong Pak, George Coukos, Brian M. Baker, Ion Măndoiu, Michal Bassani-Sternberg, Pramod K. Srivastava
Software Mentions: 1
Published: about 7 years ago

10.1172/jci.insight.143003

Proteomic approach to discover human cancer viruses from formalin-fixed tissues
Cited by: 2
Author(s): Tuna Toptan, Pamela S. Cantrell, Xuemei Zeng, Yang Liu, Mai Sun, Nathan A. Yates, Yuan Chang, Patrick S. Moore
Software Mentions: 1
Published: over 5 years ago

10.1172/jci.insight.144301

Acetylation of muscle creatine kinase negatively impacts high-energy phosphotransfer in heart failure
Cited by: 12
Author(s): M. Walker, Juan D. Chavez, Outi Villet, Xiaoting Tang, Andrew Keller, James E. Bruce, Rong Tian
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.M113.513275

A Trimeric Lipoprotein Assists in Trimeric Autotransporter Biogenesis in Enterobacteria
Cited by: 25
Author(s): Iwan Grin, M.D. Hartmann, Guido Sauer, Birte Hernandez Alvarez, Monika Schütz, Samuel Wagner, Johannes Madlung, Boris Maček, Alfonso Felipe-López, Michael Hensel, Andrei N. Lupas, Dirk Linke
Software Mentions: 1
Published: over 12 years ago

10.1074/jbc.M113.529578

New Insights into the DT40 B Cell Receptor Cluster Using a Proteomic Proximity Labeling Assay
Cited by: 103
Author(s): Xuewen Li, Johanna S. Rees, Peng Xue, Hong Zhang, Samir Hamaia, Bailey Sanderson, Phillip E. Funk, Richard W. Farndale, Kathryn S. Lilley, Sarah Perrett, Antony P. Jackson
Software Mentions: 1
Published: over 12 years ago

10.1074/jbc.M114.580464

Human METTL20 Methylates Lysine Residues Adjacent to the Recognition Loop of the Electron Transfer Flavoprotein in Mitochondria
Cited by: 47
Author(s): Virginie Rhein, Joe Carroll, Jin He, Shuzhe Ding, Ian M. Fearnley, John E. Walker
Software Mentions: 1
Published: about 12 years ago

10.1074/jbc.M115.657361

Proteomic Analysis of GLUT4 Storage Vesicles Reveals Tumor Suppressor Candidate 5 (TUSC5) as a Novel Regulator of Insulin Action in Adipocytes
Cited by: 46
Author(s): Daniel J. Fazakerley, Sheyda Naghiloo, Rima Chaudhuri, Françoise Koumanov, James G. Burchfield, Kristen C. Thomas, James R. Krycer, Matthew J. Prior, Benjamin L. Parker, Beverley A. Murrow, Jacqueline Stöckli, Christopher C. Meoli, Geoffrey D. Holman, David E. James
Software Mentions: 1
Published: almost 11 years ago

10.1074/jbc.M116.734970

NDUFAF5 Hydroxylates NDUFS7 at an Early Stage in the Assembly of Human Complex I
Cited by: 39
Author(s): Virginie Rhein, Joe Carroll, Shuzhe Ding, Ian M. Fearnley, John E. Walker
Software Mentions: 1
Published: about 10 years ago

10.1074/jbc.RA118.005114

Plasma membrane profiling during enterohemorrhagic E. coli infection reveals that the metalloprotease StcE cleaves CD55 from host epithelial surfaces
Cited by: 6
Author(s): R. Christopher D. Furniss, Wen Wen Low, Despoina A. I. Mavridou, Laura F. Dagley, Andrew I. Webb, Edward W. Tate, Abigail Clements
Software Mentions: 1
Published: almost 8 years ago

10.1074/jbc.RA118.006917

Global biochemical and structural analysis of the type IV pilus from the Gram-positive bacterium Streptococcus sanguinis
Cited by: 21
Author(s): Jamie-Lee Berry, Ishwori Gurung, Jan Haug Anonsen, Ingrid Spielman, Elliot Harper, A. Hall, Vivianne J. Goosens, Claire Raynaud, Michael Koomey, Nicolas Biais, Steve Matthews, Vladimir Pelicic
Software Mentions: 1
Published: over 7 years ago

10.1074/jbc.RA119.011638

RNase L promotes the formation of unique ribonucleoprotein granules distinct from stress granules
Cited by: 45
Author(s): James Burke, Evan Lester, Devin Tauber, Roy Parker
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA120.013780

Multisite SUMOylation restrains DNA polymerase η interactions with DNA damage sites
Cited by: 14
Author(s): Claire Guérillon, Stine Smedegaard, Ivo A. Hendriks, Michael L. Nielsen, Niels Mailand
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.RA120.014761

Cholesterol sensing by CD81 is important for hepatitis C virus entry
Cited by: 14
Author(s): Machaela Palor, Lenka Stejskal, Piya Mandal, Annasara Lenman, María Pía Alberione, Jared Kirui, Rebecca Moeller, Stefan Ebner, Felix Meissner, Gisa Gerold, Adrian J. Shepherd, Joe Grove
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.013908

ATP13A3 is a major component of the enigmatic mammalian polyamine transport system
Cited by: 43
Author(s): Norin Nabil Hamouda, Chris Van den Haute, Roeland Vanhoutte, Ragna Sannerud, Mujahid Azfar, Rupert L. Mayer, Álvaro Cortés Calabuig, Johannes V. Swinnen, Patrizia Agostinis, Veerle Baekelandt, Wim Annaert, Francis Impens, Steven H. L. Verhelst, Jan Eggermont, Shaun Martin, Peter Vangheluwe
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100408

The ubiquitin ligase Ariadne-1 regulates neurotransmitter release via ubiquitination of NSF
Cited by: 5
Author(s): Juanma Ramírez, Miguel Morales, Nerea Osinalde, Imanol Martínez-Padrón, Ugo Mayor, Alberto Ferrús
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100673

The Escherichia coli S2P intramembrane protease RseP regulates ferric citrate uptake by cleaving the sigma factor regulator FecR
Cited by: 13
Author(s): Takako Yokoyama, Tomoya Niinae, Kazuya Tsumagari, Yasushi Ishihama, Yohei Hizukuri, Yoshinori Akiyama
Software Mentions: 1
Published: over 5 years ago

10.1186/s13036-019-0172-5

Efficient reduction of synthetic mRNA induced immune activation by simultaneous delivery of B18R encoding mRNA
Cited by: 12
Author(s): Tatjana Michel, Sonia Golombek, Heidrun Steinle, Ludmilla Hann, Ana Velić, Boris Maček, Stefanie Krajewski, Christian Schlensak, Hans Peter Wendel, Meltem Avci‐Adali
Software Mentions: 1
Published: over 7 years ago

10.1186/s12929-020-00668-5

ZNF322A-mediated protein phosphorylation induces autophagosome formation through modulation of IRS1-AKT glucose uptake and HSP-elicited UPR in lung cancer
Cited by: 7
Author(s): Chantal Hoi Yin Cheung, Chia‐Lang Hsu, Tung‐Ching Lin, Wei Ting Chen, Yi‐Ching Wang, Hsuan Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: about 6 years ago

10.1002/jcsm.12527

Comparative proteomic analyses of Duchenne muscular dystrophy and Becker muscular dystrophy muscles: changes contributing to preserve muscle function in Becker muscular dystrophy patients
Cited by: 61
Author(s): Daniele Capitanio, Manuela Moriggi, Enrica Torretta, Pietro Barbacini, Sara De Palma, Adriano Viganò, Hanns Lochmüller, Francesco Muntoni, Alessandra Ferlini, Marina Mora, Cecilia Gelfi
Software Mentions: 1
Published: over 6 years ago

10.1083/jcb.201712013

Xpo7 is a broad-spectrum exportin and a nuclear import receptor
Cited by: 34
Author(s): Metin Aksu, Tino Pleiner, Samir Karaca, Christin Kappert, Heinz-Jürgen Dehne, Katharina Seibel, Henning Urlaub, Markus T. Bohnsack, Dirk Görlich
Software Mentions: 1
Published: over 8 years ago

10.1111/jcmm.15043

Respiratory chain signalling is essential for adaptive remodelling following cardiac ischaemia
Cited by: 14
Author(s): Marten Szibor, Rolf Schreckenberg, Zemfira Gizatullina, Éric Dufour, Marion Wiesnet, Praveen K. Dhandapani, Grażyna Dębska–Vielhaber, Juliana Heidler, Ilka Wittig, Tuula A. Nyman, Ulrich Gärtner, Andrew Hall, Victoria R. Pell, Carlo Viscomi, Thomas Krieg, Michael P. Murphy, Thomas Braun, Frank N. Gellerich, Klaus‐Dieter Schlüter, Howard T. Jacobs
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.15351

Protection of melatonin against acidosis‐induced neuronal injuries
Cited by: 9
Author(s): Yan Shi, Er‐Li Cai, Chaowu Yang, Chao-Yuan Ye, Peng Zeng, Xiaoming Wang, Ying-Yan Fang, Zhi-Kang Cheng, Qun Wang, Fuliang Cao, Xin‐Wen Zhou, Qing Tian
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.168864

Cezanne regulates E2F1-dependent HIF2α expression
Cited by: 44
Author(s): Sónia Moniz, Daniel Bandarra, John Biddlestone, Kirsteen J. Campbell, David Komander, Anja Bremm, Sónia Rocha
Software Mentions: 1
Published: over 11 years ago

10.1242/jcs.190124

TOR complex 2 localises to the cytokinetic actomyosin ring and controls the fidelity of cytokinesis
Cited by: 15
Author(s): Karen Baker, Sara Kirkham, Lenka Hálová, Jane Atkin, Mirita Franz‐Wachtel, David Cobley, Karsten Krug, Boris Maček, Daniel P. Mulvihill, Janni Petersen
Software Mentions: 1
Published: over 10 years ago

10.1242/jcs.190835

A proteomic approach to identify endosomal cargoes controlling cancer invasiveness
Cited by: 13
Author(s): Jésica Díaz-Vera, Sarah Palmer, Juan R. Hernández-Fernaud, Emmanuel Dornier, Louise Mitchell, Iain Macpherson, Joanne Edwards, Sara Zanivan, Jim C. Norman
Software Mentions: 1
Published: over 9 years ago

10.1242/jcs.223925

Import of extracellular ATP in yeast and man modulates AMPK and TORC1 signalling
Cited by: 16
Author(s): Gabriella Forte, Elizabeth A. Colby Davie, Shervi Lie, Mirita Franz‐Wachtel, Ashley J. Ovens, Tingting Wang, Jonathan S. Oakhill, Boris Maček, Iain Hagan, Janni Petersen
Software Mentions: 1
Published: over 7 years ago

10.1242/jcs.234401

Plk1-dependent cell cycle-independent furrowing triggered by phosphomimetic mutations of the INCENP STD motif
Cited by: 3
Author(s): Diana Papini, Xavier Fant, Hiromi Ogawa, Nathalie Desban, Kumiko Samejima, Omid Feizbakhsh, Bilge Askin, Tony Ly, William C. Earnshaw, Sandrine Ruchaud
Software Mentions: 1
Published: over 7 years ago

10.1242/jcs.241976

The mammalian cytosolic thioredoxin reductase pathway acts via a membrane protein to reduce ER-localised proteins
Cited by: 14
Author(s): Xiaofei Cao, Sérgio Lilla, Zhenbo Cao, Marie Anne Pringle, Ojore Oka, Philip J. Robinson, Tomasz Szmaja, Marcel van Lith, Sara Zanivan, Neil J. Bulleid
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.242271

Control of assembly of extra-axonemal structures: the paraflagellar rod of trypanosomes
Cited by: 14
Author(s): Aline A. Alves, Heloisa B. Gabriel, Maria J. R. Bezerra, Wanderley de Souza, Sue Vaughan, Narcisa L. Cunha-e-Silva, Jack D. Sunter
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.248591

Chromokinesin KIF4A teams up with stathmin 1 to regulate abscission in a SUMO-dependent manner
Cited by: 6
Author(s): Sabine A. G. Cuijpers, Edwin Willemstein, Jan Gustav Ruppert, Daphne M. van Elsland, William C. Earnshaw, Alfred C.O. Vertegaal
Software Mentions: 1
Published: about 6 years ago

10.1242/jcs.246025

The C-terminal helix of BubR1 is essential for CENP-E-dependent chromosome alignment
Cited by: 16
Author(s): Thibault Legal, Daniel Hayward, Agata Gluszek-Kustusz, Elizabeth A. Blackburn, Christos Spanos, Juri Rappsilber, Ulrike Grüneberg, Julie Welburn
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.254300

Characterization of the novel mitochondrial genome segregation factor TAP110 in Trypanosoma brucei
Cited by: 21
Author(s): Simona Amodeo, Ana Kalichava, Albert Fradera-Sola, Eloïse Bertiaux-Lequoy, Paul Guichard, Falk Butter, Torsten Ochsenreiter
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm9030820

Ponatinib Induces Vascular Toxicity through the Notch-1 Signaling Pathway
Cited by: 15
Author(s): Rosalinda Madonna, Damiana Pieragostino, Maria Concetta Cufaro, Vanessa Doria, Piero Del Boccio, Martino Deidda, Sante D. Pierdomenico, Christian Cadeddu Dessalvi, Raffaele De Caterina, Giuseppe Mercuro
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm9051573

Novel Insights into the Role of UBE3A in Regulating Apoptosis and Proliferation
Cited by: 10
Author(s): Lilach Simchi, Julia Panov, Olla Morsy, Yonatan Feuermann, Hanoch Kaphzan
Software Mentions: 1
Published: about 6 years ago

10.3390/jcm9113778

AL Amyloidosis: The Effect of Maintenance Therapy on Autologous Stem Cell Transplantation Outcomes
Cited by: 6
Author(s): Michael Ozga, Qiuhong Zhao, Don M. Benson, Patrick Elder, Nita Williams, Naresh Bumma, Ashley Rosko, Maria Chaudhry, Abdullah Khan, Srinivas Devarakonda, Rami Kahwash, Ajay Vallakati, Courtney Campbell, Samir Parikh, Salem Almaani, Jason Prosek, Jordan Bittengle, Katherine Pfund, Samantha LoRusso, Miriam Freimer, Elyse Redder, Yvonne A. Efebera, Nidhi Sharma
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/erw147

Quantitative proteomics reveals the importance of nitrogen source to control glucosinolate metabolism inArabidopsis thalianaandBrassica oleracea
Cited by: 49
Author(s): Daniel Marino, Idoia Ariz, Berta Lasa, Enrique Santamaría, Joaquín Fernández‐Irigoyen, Carmen González‐Murua, Pedro María Aparicio Tejo
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erx183

Affinity purification with metabolomic and proteomic analysis unravels diverse roles of nucleoside diphosphate kinases
Cited by: 29
Author(s): Marcin Luzarowski, Monika Kosmacz, Ewelina Sokołowska, Weronika Jasińska, Lothar Willmitzer, Daniel Veyel
Software Mentions: 1
Published: about 9 years ago

10.1093/jxb/erz021

Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis
Cited by: 10
Author(s): Sacha Escamez, Simon Stael, Julia P. Vainonen, Patrick J. Willems, Huiting Jin, Shigenobu Kimura, Frank Van Breusegem, Kris Gevaert, Michael Wrzaczek, Hannele Tuominen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1003663

Sequestration by IFIT1 Impairs Translation of 2′O-unmethylated Capped RNA
Cited by: 171
Author(s): Matthias Habjan, Philipp Hubel, Lívia C. T. Lacerda, Christian Benda, Cathleen Holze, H. Christian Eberl, Angelika Mann, Eveline Kindler, Cristina Gil‐Cruz, John Ziebuhr, Volker Thiel, Andreas Pichlmair
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1004924

Evidence for a Novel Mechanism of Influenza Virus-Induced Type I Interferon Expression by a Defective RNA-Encoded Protein
Cited by: 25
Author(s): Yvonne Boergeling, Timofey S. Rozhdestvensky, Mirco Schmolke, Patricia Resa-Infante, Thomas Robeck, Gerrit Randau, Thorsten Wolff, Gülşah Gabriel, Jürgen Brosius, Stephan Ludwig
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005439

Quantitative Proteomics Uncovers Novel Factors Involved in Developmental Differentiation of Trypanosoma brucei
Cited by: 82
Author(s): Mario Dejung, Ines Subota, Ferdinand Bucerius, G. Dindar, Anja Freiwald, Markus Engstler, Michael Boshart, Falk Butter, Christian J. Janzen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005971

Activation of Bicyclic Nitro-drugs by a Novel Nitroreductase (NTR2) in Leishmania
Cited by: 64
Author(s): Susan Wyllie, Adam J. Roberts, Suzanne Norval, Stephen Patterson, Bernardo J. Foth, Matthew Berriman, Kevin D. Read, Alan H. Fairlamb
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1006071

Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus
Cited by: 64
Author(s): Tobias Dietsche, Mehari Tesfazgi Mebrhatu, Matthias Brünner, Patrizia Abrusci, Jun Yan, Mirita Franz‐Wachtel, Charlotta Schärfe, Susann Zilkenat, Iwan Grin, Jorge E. Galán, Oliver Kohlbacher, Susan M. Lea, Boris Maček, Thomas C. Marlovits, Carol V. Robinson, Samuel Wagner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006550

A trypanosomal orthologue of an intermembrane space chaperone has a non-canonical function in biogenesis of the single mitochondrial inner membrane protein translocase
Cited by: 21
Author(s): Christoph Wenger, Silke Oeljeklaus, Bettina Warscheid, André Schneider, Anke Harsman
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006635

Influenza virus differentially activates mTORC1 and mTORC2 signaling to maximize late stage replication
Cited by: 72
Author(s): Sharon K. Kuss-Duerkop, Juan Wang, Ignacio Mena, Kris M. White, Giorgi Metreveli, Ramanavelan Sakthivel, Miguel A. Mata, Raquel Muñoz-Moreno, Xiang Chen, Florian Krammer, Michael S. Diamond, Zhijian J. Chen, Adolfo Garcı́a-Sastre, Beatriz M. A. Fontoura
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006697

Regulation of NF-κB by the p105-ABIN2-TPL2 complex and RelAp43 during rabies virus infection
Cited by: 27
Author(s): Benoît Besson, Florian Sonthonnax, Magalie Duchateau, Youcef Ben Khalifa, Florence Larrous, Hyeju Eun, Véronique Hourdel, Mariette Matondo, Julia Chamot‐Rooke, Régis Grailhe, Hervé Bourhy
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1007111

Hepatitis C virus enters liver cells using the CD81 receptor complex proteins calpain-5 and CBLB
Cited by: 41
Author(s): Janina Bruening, Lisa Laßwitz, Pia Banse, Sina Kahl, Carine Marinach, Florian W. R. Vondran, Lars Kaderali, Olivier Silvie, Thomas Pietschmann, Felix Meissner, Gisa Gerold
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007736

A novel interaction between dengue virus nonstructural protein 1 and the NS4A-2K-4B precursor is required for viral RNA replication but not for formation of the membranous replication organelle
Cited by: 61
Author(s): Anna Płaszczyca, Pietro Scaturro, Christopher J. Neufeldt, Mirko Cortese, Berati Cerikan, Salvatore Ferla, Andrea Brancale, Andreas Pichlmair, Ralf Bartenschlager
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1007809

Divergent roles for the RH5 complex components, CyRPA and RIPR in human-infective malaria parasites
Cited by: 26
Author(s): Ellen Knuepfer, Katherine E. Wright, Surendra Kumar Prajapati, Thomas A. Rawlinson, Franziska Mohring, Marion Koch, Oliver Lyth, Steven Howell, Elizabeth Villasis, Ambrosius P. Snijders, Robert W. Moon, Simon J. Draper, Anna Rosanas-Urgell, Matthew K. Higgins, Jake Baum, Anthony A. Holder
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.ppat.1007973

Essential role of GEXP15, a specific Protein Phosphatase type 1 partner, in Plasmodium berghei in asexual erythrocytic proliferation and transmission
Cited by: 17
Author(s): Thomas Hollin, Caroline De Witte, Aline Fréville, Ida Chiara Guerrera, Cérina Chhuon, Jean‐Michel Saliou, Fabien Herbert, Christine Pierrot, Jamal Khalife
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.ppat.1008640

Ubiquitin activation is essential for schizont maturation in Plasmodium falciparum blood-stage development
Cited by: 19
Author(s): Judith L. Green, Yang Wu, Vesela Encheva, Edwin Lasonder, Adchara Prommaban, Simone Kunzelmann, Evangelos Christodoulou, Munira Grainger, Ngoc Truongvan, Sebastian Bothe, Vikram Sharma, Wei Song, Irene Pinzuti, Chairat Uthaipibull, Somdet Srichairatanakool, Véronique Birault, Gordon Langsley, Hermann Schindelin, Benjamin Stieglitz, Ambrosius P. Snijders, Anthony A. Holder
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008775

Discrete spatio-temporal regulation of tyrosine phosphorylation directs influenza A virus M1 protein towards its function in virion assembly
Cited by: 4
Author(s): Angeles Mecate-Zambrano, Swathi Sukumar, Guiscard Seebohm, Kevin Ciminski, André Schreiber, Darisuren Anhlan, Lilo Greune, Ludmilla Wixler, S. Grothe, Nora C. Stein, M. Alexander Schmidt, Klaus Langer, Martin Schwemmle, Ting Shi, Stephan Ludwig, Yvonne Boergeling
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008855

SAMHD1 phosphorylation and cytoplasmic relocalization after human cytomegalovirus infection limits its antiviral activity
Cited by: 12
Author(s): Simone De Meo, Valentina Dell’Oste, Rosa Molfetta, Valentina Tassinari, Lavinia Vittoria Lotti, Simone Vespa, Benedetta Pignoloni, Daniela Angela Covino, Laura Fantuzzi, Roberta Bona, Alessandra Zingoni, Ilaria Nardone, Matteo Biolatti, Alessandra Coscia, Rossella Paolini, Monsef Benkirane, Fredrik Edfors, Tatyana Sandalova, Adnane Achour, John Hiscott, Santo Landolfo, Angela Santoni, Cristina Cerboni
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1009134

The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cells
Cited by: 4
Author(s): Samuel Stokes, Floriane Almire, Michael H. Tatham, Steven McFarlane, Peter Mertens, Emilie Pondeville, Chris Boutell
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.1910262116

Corazonin signaling integrates energy homeostasis and lunar phase to regulate aspects of growth and sexual maturation in Platynereis
Cited by: 44
Author(s): Gabriele Andreatta, Caroline Broyart, Charline Borghgraef, Karim Vadiwala, V. V. Kozin, Alessandra Polo, Andrea Bileck, Isabel Beets, Liliane Schoofs, Christopher Gerner, Florian Raible
Software Mentions: 1
Published: over 6 years ago

10.1073/pnas.1905641117

Direct visualization of degradation microcompartments at the ER membrane
Cited by: 62
Author(s): Sahradha Albert, Wojciech Wietrzyñski, Chia-Wei Lee, Miroslava Schaffer, Florian Beck, Jan M. Schuller, Patrice A. Salomé, Jürgen M. Plitzko, Wolfgang Baumeister, Benjamin D. Engel
Software Mentions: 1
Published: over 6 years ago

10.1186/1477-5956-10-28

In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea
Cited by: 75
Author(s): Karlheinz Mann, Eric Edsinger, Matthias Mann
Software Mentions: 1
Published: over 14 years ago

10.1186/1477-5956-11-40

The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell
Cited by: 41
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: over 13 years ago

10.1186/1477-5956-11-43

Quantitative proteomics reveals regulatory differences in the chondrocyte secretome from human medial and lateral femoral condyles in osteoarthritic patients
Cited by: 35
Author(s): Johan Stenberg, Ulla Rüetschi, Eva Skiöldebrand, Johan Kärrholm, Anders Lindahl
Software Mentions: 1
Published: almost 13 years ago

10.1186/1477-5956-12-41

Probing SH2-domains using Inhibitor Affinity Purification (IAP)
Cited by: 10
Author(s): Michael Höfener, Stephanie Heinzlmeir, Bernhard Küster, Norbert Sewald
Software Mentions: 1
Published: about 12 years ago

10.1186/s12953-015-0078-1

Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes
Cited by: 27
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12953-015-0086-1

The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)
Cited by: 29
Author(s): Karlheinz Mann
Software Mentions: 1
Published: over 10 years ago

10.1186/s12953-016-0110-0

An interactomics overview of the human and bovine milk proteome over lactation
Cited by: 33
Author(s): Lina Zhang, Aalt D. J. van Dijk, Kasper Hettinga
Software Mentions: 1
Published: over 9 years ago

10.1186/s12953-020-00165-5

Differences in plasma proteomes for active tuberculosis, latent tuberculosis and non-tuberculosis mycobacterial lung disease patients with and without ESAT-6/CFP10 stimulation
Cited by: 5
Author(s): Takele Teklu, Biniam Wondale, Biruhalem Taye, Milkessa HaileMariam, Shiferaw Bekele, Mesfin Tamirat, Aboma Zewude, Temesgen Mohamed, Girmay Medhin, Mengistu Legesse, Yu Yoshida, Gobena Ameni, Rembert Pieper
Software Mentions: 1
Published: almost 6 years ago

10.3390/proteomes4020016

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer
Cited by: 5
Author(s): Jae-Young Kim, Paul A. Stewart, Adam L. Borne, Bin Fang, Eric A. Welsh, Yian Ann Chen, Steven Eschrich, John M. Koomen, Eric B. Haura
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes4010010

Comparing Simplification Strategies for the Skeletal Muscle Proteome
Cited by: 2
Author(s): Bethany Geary, Iain S. Young, Phillip Cash, Phillip D. Whitfield, Mary K. Doherty
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes6020019

A Proteomic View of Salmonella Typhimurium in Response to Phosphate Limitation
Cited by: 8
Author(s): Jiezhang Jiang, Kaiwen Yu, Linlu Qi, Yanhua Liu, Sen Cheng, Mei Wu, Zhen Wang, Jiaqi Fu, Xiaoyun Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/proteomes8020006

Vesiculation of Red Blood Cells in the Blood Bank: A Multi-Omics Approach towards Identification of Causes and Consequences
Cited by: 11
Author(s): Joames Kauffimann Freitas Leal, Edwin Lasonder, Vikram Sharma, Jürgen Schiller, Guido Fanelli, Sara Rinalducci, Roland Brock, G.J.C.G.M. Bosman
Software Mentions: 1
Published: over 6 years ago

10.3390/proteomes8030016

High-Throughput Identification of the Rhodnius prolixus Midgut Proteome Unravels a Sophisticated Hematophagic Machinery
Cited by: 10
Author(s): Radouane Ouali, Karen Caroline Valentim de Brito, Didier Salmon, Sabrina Bousbata
Software Mentions: 1
Published: about 6 years ago

10.3390/proteomes9020019

Combining Mass Spectrometry-Based Phosphoproteomics with a Network-Based Approach to Reveal FLT3-Dependent Mechanisms of Chemoresistance
Cited by: 4
Author(s): Giusj Monia Pugliese, Sara Latini, Giorgia Massacci, Livia Perfetto, Francesca Sacco
Software Mentions: 1
Published: over 5 years ago

10.3390/proteomes9030037

Insulin and 5-Aminoimidazole-4-Carboxamide Ribonucleotide (AICAR) Differentially Regulate the Skeletal Muscle Cell Secretome
Cited by: 4
Author(s): Alba González-Franquesa, Lone Peijs, Daniel T. Cervone, Ceren Koçana, Juleen R. Zierath, Atul S. Deshmukh
Software Mentions: 1
Published: about 5 years ago

10.1002/pmic.201500400

Group 1 metabotropic glutamate receptors 1 and 5 form a protein complex in mouse hippocampus and cortex
Cited by: 50
Author(s): Nikhil J. Pandya, Remco V. Klaassen, Roel C. van der Schors, Johan A. Slotman, Adriaan B. Houtsmuller, August B. Smit, Ka Wan Li
Software Mentions: 1
Published: almost 10 years ago

10.1002/pmic.201600213

Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation
Cited by: 4
Author(s): René B. H. Braakman, Christoph Stingl, Madeleine M.A. Tilanus-Linthorst, Carolien H.M. van Deurzen, Mieke Timmermans, Marcel Smid, John A. Foekens, Theo M. Luider, John W.M. Martens, Arzu Umar
Software Mentions: 1
Published: over 9 years ago

10.1002/pmic.201400527

Quantitative proteomics and network analysis of SSA1 and SSB1 deletion mutants reveals robustness of chaperone HSP70 network inSaccharomyces cerevisiae
Cited by: 13
Author(s): Andrew F. Jarnuczak, Patrick A. Eyers, Jean-Marc Schwartz, Chris M. Grant, Simon J. Hubbard
Software Mentions: 1
Published: over 11 years ago

10.1002/pmic.201500503

Absolute protein quantification of the yeast chaperome under conditions of heat shock
Cited by: 17
Author(s): R. Mackenzie, Craig Lawless, Stephen W. Holman, Karin Lanthaler, Robert J. Beynon, Chris M. Grant, Simon J. Hubbard, Patrick A. Eyers
Software Mentions: 1
Published: about 10 years ago

10.1002/prca.201900029

Moonlighting Proteins and Cardiopathy in the Spatial Response of MCF‐7 Breast Cancer Cells to Tamoxifen
Cited by: 2
Author(s): Abdulrab Ahmed M. Alkhanjaf, Roberto Raggiaschi, Mark Crawford, Gabriella Pinto, Jasminka Godovac‐Zimmermann
Software Mentions: 1
Published: about 7 years ago

10.1098/rsos.161004

Proteomic profiling of archaeological human bone
Cited by: 70
Author(s): Rikai Sawafuji, Enrico Cappellini, Tomohito Nagaoka, Anna K. Fotakis, Rosa Rakownikow Jersie-Christensen, Jesper V. Olsen, Kazuaki Hirata, Shintaroh Ueda
Software Mentions: 1
Published: about 9 years ago

10.1016/j.redox.2018.11.015

Citrate reduced oxidative damage in stem cells by regulating cellular redox signaling pathways and represent a potential treatment for oxidative stress-induced diseases
Cited by: 22
Author(s): Xiaopei Wu, Hanren Dai, Langlang Liu, Chao Xu, Yi Yin, Jing Yi, Monika Bielec, Yingchao Han, Shipu Li
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2018.101087

Quantifying changes in the bacterial thiol redox proteome during host-pathogen interaction
Cited by: 26
Author(s): Kaibo Xie, Christina Bunse, Katrin Marcus, Lars I. Leichert
Software Mentions: 1
Published: over 7 years ago

10.1016/j.redox.2019.101318

Covalent Aurora A regulation by the metabolic integrator coenzyme A
Cited by: 39
Author(s): Yugo Tsuchiya, Dominic P. Byrne, Selena G. Burgess, Jens Bormann, Jovana Baković, Yueyang Huang, Alexander Zhyvoloup, Bess Yi Kun Yu, Sew Y. Peak‐Chew, Trang Tran, Fiona Bellany, Alethea B. Tabor, Aw Edith Chan, Lalitha Guruprasad, O. M. Garifulin, Valeriy Filonenko, Matthias Vonderach, Samantha Ferries, Patrick A. Eyers, John Carroll, Mark Skehel, Richard Bayliss, Patrick A. Eyers, Ivan Gout
Software Mentions: 1
Published: over 6 years ago

10.1016/j.redox.2020.101597

Bioenergetic shift and actin cytoskeleton remodelling as acute vascular adaptive mechanisms to angiotensin II in murine retina and ophthalmic artery
Cited by: 15
Author(s): Natarajan Perumal, Lars Straßburger, David P. Herzog, Marianne B. Müller, Norbert Pfeiffer, Franz H. Grus, Caroline Manicam
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-016-0362-3

Identification of vitamin D sensitive pathways during lung development
Cited by: 36
Author(s): Ling Chen, Richard Wilson, Ellen Bennett, Graeme R. Zosky
Software Mentions: 1
Published: over 10 years ago

10.1016/j.xpro.2020.100022

Assessing Budding Yeast Phosphoproteome Dynamics in a Time-Resolved Manner using TMT10plex Mass Tag Labeling
Cited by: 6
Author(s): Andrew W. Jones, Helen Flynn, Frank Uhlmann, Ambrosius P. Snijders, Sandra A. Touati
Software Mentions: 1
Published: about 6 years ago

10.1016/j.xpro.2021.100462

Purification and quantitative proteomic analysis of cell bodies and protrusions
Cited by: 0
Author(s): Maria Dermit, Faraz K. Mardakheh
Software Mentions: 1
Published: about 5 years ago

10.1016/j.xpro.2021.100682

A protocol for analyzing the protein terminome of human cancer cell line culture supernatants
Cited by: 2
Author(s): Kazuya Tsumagari, Chih‐Hsiang Chang, Yasushi Ishihama
Software Mentions: 1
Published: almost 5 years ago

10.1126/sciadv.1701016

Ligand binding to a G protein–coupled receptor captured in a mass spectrometer
Cited by: 47
Author(s): Hsin‐Yung Yen, Jonathan T. S. Hopper, Idlir Liko, Timothy M. Allison, Yun Zhu, Dejian Wang, Monika Stegmann, Shabaz Mohammed, Beili Wu, Carol V. Robinson
Software Mentions: 1
Published: about 9 years ago

10.1126/sciadv.aay6804

A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules
Cited by: 35
Author(s): Pilar Gutiérrez-Escribano, Matthew D. Newton, Aida Llauró, Jonas Huber, Loredana Tanasie, Joseph Davy, Isabel Aly, Ricardo Aramayo, Alex Montoya, Holger Kramer, Johannes Stigler, David Rueda, Luís Aragón
Software Mentions: 1
Published: almost 7 years ago

10.1038/sdata.2015.47

The proteome of mouse vestibular hair bundles over development
Cited by: 34
Author(s): Jocelyn F. Krey, Nicholas E. Sherman, Erin Jeffery, Dongseok Choi, Peter G. Barr-Gillespie
Software Mentions: 1
Published: almost 11 years ago

10.1038/sdata.2018.31

Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells
Cited by: 22
Author(s): Giorgio Giurato, Giovanni Nassa, Annamaria Salvati, Elena Alexandrova, Francesca Rizzo, Tuula A. Nyman, Alessandro Weisz, Roberta Tarallo
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2018.128

Mass spectrometry quantitation of proteins from small pools of developing auditory and vestibular cells
Cited by: 16
Author(s): Jocelyn F. Krey, Déborah I. Scheffer, Dongseok Choi, Ashok P. Reddy, Larry L. David, David P. Corey, Peter G. Barr-Gillespie
Software Mentions: 1
Published: about 8 years ago

10.1038/s41597-019-0166-7

A dataset describing a suite of novel antibody reagents for the RAS signaling network
Cited by: 4
Author(s): Regine M. Schoenherr, Dongqing Huang, Uliana J. Voytovich, Richard G. Ivey, Jacob J. Kennedy, Richard G. Saul, Simona Colantonio, Rhonda R. Roberts, Joseph G. Knotts, Jan Kaczmarczyk, Candice Perry, Stephen M. Hewitt, William Bocik, Gordon Whiteley, Tara Hiltke, Emily S. Boja, Henry Rodriguez, Jeffrey R. Whiteaker, Amanda G. Paulovich
Software Mentions: 1
Published: almost 7 years ago

Projects: cran: Andromeda

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