Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: signeR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/signeR
Empirical Bayesian approach to mutational signature discovery
1 version
Latest release: about 1 year ago
12,776 downloads total
Papers Mentioning signeR 9
10.1371/journal.pone.0221235
Computational tools to detect signatures of mutational processes in DNA from tumours: A review and empirical comparison of performanceCited by: 42
Author(s): Hanane Omichessan, Gianluca Severi, Vittorio Perduca
Software Mentions: 9
Published: over 5 years ago
10.1371/journal.pcbi.1009119
De novo mutational signature discovery in tumor genomes using SparseSignaturesCited by: 21
Author(s): Avantika Lal, Keli Liu, Robert Tibshirani, Arend Sidow, Daniele Ramazzotti
Software Mentions: 6
Published: over 3 years ago
10.1186/s12864-018-5264-y
Helmsman: fast and efficient mutation signature analysis for massive sequencing datasetsCited by: 18
Author(s): Jedidiah Carlson, Jun Z. Li, Sebastian Zöllner
Software Mentions: 6
Published: about 6 years ago
10.1038/s41398-018-0342-0
Assessment of somatic single-nucleotide variation in brain tissue of cases with schizophreniaCited by: 15
Author(s): John F. Fullard, Alexander Charney, Georgios Voloudakis, Andrew Uzilov, Vahram Haroutunian, Panos Roussos
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12864-019-6041-2
SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational eventsCited by: 142
Author(s): Erik N. Bergstrom, Huang Mi, Uma Mahto, Mark Barnes, Michael R. Stratton, Steven G. Rozen, Ludmil B. Alexandrov
Software Mentions: 4
Published: over 5 years ago
10.3390/cancers13030490
Mutational Signatures Driven by Epigenetic Determinants Enable the Stratification of Patients with Gastric Cancer for Therapeutic InterventionCited by: 4
Author(s): Jaqueline Ramalho Buttura, Monize Nakamoto Provisor Santos, Renan Valieris, Rodrigo Duarte Drummond, Alexandre Defelicibus, João Paulo da Silveira Nogueira Lima, Vinícius Fernando Calsavara, Helano C. Freitas, Vladmir Cláudio Cordeiro de Lima, Thais Fernanda Bartelli, Marc Wiedner, Rafael Rosales, Kenneth J. Gollob, Joanna I. Loizou, Emmanuel Dias-Neto, Diana Noronha Nunes, Israel Tojal da Silva
Software Mentions: 2
Published: almost 4 years ago
10.7717/peerj.7557
HiLDA: a statistical approach to investigate differences in mutational signaturesCited by: 5
Author(s): Zhi Yang, Priyatama Pandey, Darryl Shibata, David V. Conti, Paul Marjoram, Kimberly D. Siegmund
Software Mentions: 2
Published: over 5 years ago
10.3390/cancers12123687
Deep Learning Predicts Underlying Features on Pathology Images with Therapeutic Relevance for Breast and Gastric CancerCited by: 27
Author(s): Renan Valieris, Lucas Amaro, C Osorio, Adriana Passos Bueno, Rafael Andres Rosales Mitrowsky, Dirce Maria Carraro, Diana Noronha Nunes, Emmanuel Dias-Neto, Israel Tojal da Silva
Software Mentions: 1
Published: about 4 years ago
10.3390/genes11101127
Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer GenomesCited by: 4
Author(s): Taro Matsutani, Michiaki Hamada
Software Mentions: 1
Published: over 4 years ago